FFCP PHASE1:Hg19::chr19:35739578..35739589,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:35739578..35739589,+ to FFCP PHASE1:Hg19::chr19:35739578..35739589,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51599 | |EntrezGene=51599 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29572 | |HGNC=29572 | ||
|TSSclassifier=strong | |||
|UniProt=E9PHD4,A6NDW3,Q86X29,Q9BT33,Q9BWS2 | |UniProt=E9PHD4,A6NDW3,Q86X29,Q9BT33,Q9BWS2 | ||
|association_with_transcript=19bp_to_ENST00000354900,ENST00000360798,ENST00000361790,NM_015925,NM_205834,NM_205835,uc002nyl.2,uc002nym.2,uc002nyn.2,uc002nyo.2,uc010xsr.1_5end | |||
|cluster_id=chr19:35739578..35739589,+ | |||
|description=CAGE_peak_7_at_LSR_5end | |||
|id=chr19:35739578..35739589,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.54e-30!254;CL:0000223!9.01e-09!59;CL:0002076!1.40e-08!43 | |||
|ontology_enrichment_celltype_v019=CL:1000507;7.84e-12;10!CL:1000494;7.84e-12;10!CL:1000497;6.18e-09;17!CL:0002518;6.18e-09;17!CL:1000449;1.17e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,3.90e-12,10;CL:1000494,3.90e-12,10;CL:0000066,3.87e-10,253;CL:1000497,4.85e-09,17;CL:0002518,4.85e-09,17;CL:1000449,7.49e-08,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!5.49e-24!106;DOID:0050687!1.18e-19!143;DOID:162!1.42e-10!235;DOID:14566!9.59e-10!239;DOID:299!8.31e-07!25 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.30e-12!169;UBERON:0000925!1.30e-12!169;UBERON:0006595!1.30e-12!169;UBERON:0005177!2.24e-11!107;UBERON:0006554!2.89e-11!44;UBERON:0001008!9.18e-11!45;UBERON:0005157!8.11e-10!51;UBERON:0005172!1.44e-09!55;UBERON:0005173!1.44e-09!55;UBERON:0002113!4.05e-09!27;UBERON:0003918!4.05e-09!27;UBERON:0005095!4.05e-09!27;UBERON:0007687!4.05e-09!27;UBERON:0000466!7.46e-09!126;UBERON:0009569!7.85e-09!113;UBERON:0001007!1.34e-08!155;UBERON:0001555!1.34e-08!155;UBERON:0007026!1.34e-08!155;UBERON:0000077!1.56e-08!130;UBERON:0000464!2.16e-08!104;UBERON:0005631!2.94e-08!14;UBERON:0000158!2.94e-08!14;UBERON:0005911!3.16e-08!82;UBERON:0000489!4.39e-08!32;UBERON:0000064!1.03e-07!219;UBERON:0002417!1.62e-07!61;UBERON:0000916!1.62e-07!61;UBERON:0004921!1.92e-07!129;UBERON:0004185!1.92e-07!129;UBERON:0000058!2.14e-07!26;UBERON:0003064!4.81e-07!37;UBERON:0005153!7.97e-07!37;UBERON:0000062!8.54e-07!511;UBERON:0001041!9.07e-07!98;UBERON:0003887!9.90e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;7.84e-12;10!UBERON:0009773;7.84e-12;10!UBERON:0001231;7.84e-12;10!UBERON:0004810;7.84e-12;10!UBERON:0006554;1.68e-09;30!UBERON:0001008;1.68e-09;30!UBERON:0001987;1.78e-08;4!UBERON:0000478;2.30e-08;24!UBERON:0002394;3.75e-08;4!UBERON:0003928;3.75e-08;4!UBERON:0002113;8.13e-08;24!UBERON:0011143;8.13e-08;24!UBERON:0006555;1.17e-07;15!UBERON:0004819;1.17e-07;15!UBERON:0001285;1.17e-07;15!UBERON:0007684;1.17e-07;15!UBERON:0002104;6.50e-07;21!UBERON:0001456;6.50e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003124,4.29e-13,7;UBERON:0004810,3.90e-12,10;UBERON:0005631,4.75e-12,14;UBERON:0000158,4.75e-12,14;UBERON:0006554,3.28e-11,47;UBERON:0001008,6.54e-11,48;UBERON:0001987,8.78e-09,4;UBERON:0004340,8.78e-09,4;UBERON:0000478,1.46e-08,24;UBERON:0001781,1.63e-08,4;UBERON:0001456,1.65e-08,22;UBERON:0004211,7.49e-08,15;UBERON:0009773,7.49e-08,15;UBERON:0001231,7.49e-08,15;UBERON:0001285,7.49e-08,15;UBERON:0007684,7.49e-08,15;UBERON:0004208,7.49e-08,15;UBERON:0000019,2.23e-07,20;UBERON:0000047,2.23e-07,20;UBERON:0010312,2.23e-07,20;UBERON:0004088,2.23e-07,20;UBERON:0010230,2.23e-07,20;UBERON:0003072,2.23e-07,20;UBERON:0004128,2.23e-07,20;UBERON:0003071,2.23e-07,20;UBERON:0006555,2.57e-07,16;UBERON:0004819,2.57e-07,16;UBERON:0002113,4.16e-07,26;UBERON:0003918,4.16e-07,26;UBERON:0011143,4.16e-07,26;UBERON:0005095,4.16e-07,26;UBERON:0007687,4.16e-07,26;UBERON:0000970,5.58e-07,21;UBERON:0002104,5.58e-07,21 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,0.697801167972428,0.873765488520689,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.328402357799783,0.236132343941038,0,0,0,0,0.30120591877825,0.369754010166788,0,0.142169232487422,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0.946895611469467,0,0.222820913770347,0,0.221533894583621,0,0.640456598628376,0.130059347559878,0,0,0,0.14828656316206,0.267540828089713,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0.486634870302636,0.378139268656271,0.443458794925128,0.087834785693126,0.261958150995425,1.45718115317017,0.741568885568859,0,0.348259474598534,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.545492241181669,0.573609190778008,0.365921118388786,1.45782745153634,1.2781333715647,0.621966330092223,1.00928340350251,0.72995471815166,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0.614942192715568,0,1.31700342490351,0,0.502644862058154,0.462942225792648,0,1.03993478527958,0,1.39116485970092,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0.148631162288728,0,1.17587489739202,0.141775097242386,1.07470227243418,0.581267877027924,0.383382679165211,0,0.088048434013226,0.414656231081544,0.864719720501769,0.50496973370552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,1.66435439510497,1.5119514666484,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0.40101294060657,0.920809889358963,0,0,0,0.902399225814824,0.770153371044148,2.35304930753057,1.46139224653261,1.37217117560738,0,0,0.215915916102139,0,1.35473218771926,0.501689773854853,1.78413391131527,0,1.34324852833307,0,0,0.256450125116389,1.64007322849853,1.62689197332152,1.33953315142039,0,0,0,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0.768760269460425,0.382838137483752,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,1.22386941009813,2.58303223602738,1.68471475667626,0.886860307073351,0.689170200620878,0,0.764637207142375,0,0,0,0,0,0,0.320472213382419,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333698283423817,0,0,0,0,0,0,0,0,2.54857095673978,0,0,2.14870036263921,0.890894042497916,1.84296421259539,0,0,0,0,0.422250816255987,0.398495976502139,0,0.755798243562828,0.818149460017238,0.615424027305347,0,0.629078458031288,1.79021174675609,0,0.0986434056369336,0,0,0,0,0,0.520855522170466,0.0874599999961957,0,0.341380344856499,1.5255219017566,0.236387681767936,0,0,0.173624994933292,0,0.120596438625408,0,0.110579259931225,0.295547618953547,0,0,0,0.230850775511391,1.70913083770502,0.922255617552241,0.987334088507493,0.434589487688032,3.82801391678303,0.183195186803725,2.13213910407454,0,0,0,0.902382642468723,0,0.167821586975843,0,0,0.210998064528027,0.163232808159148,0.565412285735763,0,0.995261931078505,0.353830258013357,0,0,0,0,0.134802265961354,0,0,0.182454789215666,0.19566461893209,0,0,0,0,0.63186579628488,0.901940516486955,1.03688191397247,0,0,0,0,0.853828638089378,1.10939738410511,0.694238953340524,0.391969589657511,0.261177619741208,0.52418000472609,2.40780445460263,0.870806981601766,0.511625219603299,0.821154570532092,0,0.441280633457501,0.225980740780532,0,0.19871461170299,0,0.195551382734803,0.561111741760736,0.213452994739353,1.19885765749278,0.576361668616424,1.14536596165916,0,0.720273989940749,0.49701014226173,1.64985824231757,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0.717873024576814,0.399358000997982,0,0.446342914883745,0.604651252380536,0,0,0.630265458457789,0.906574442192831,0.606631894687664,0.78741985211799,0.254019996197353,0,0,1.60753148465019,1.10031549277787,1.66176135211674,0.899895566206002,1.5476039091159,0.0607495566580247,0.670869375198532,0.630445658393585,0.83927341015997,0.950403028674658,0,0.383830394638891,0,0,0.25426853765475,0,0,0,1.19730191562487,0.082092520749339,0,0.113312091520126,0.732761168390412,0,0,0,1.71086837884329,0.704815022316672,0.533937062838473,0.314408610199332,0,0,0.395223263795889,0.243585196761792,0,0,0,0,0,0.314108192500469,0,0,0,0,0.110929051536852,0,0,0,0,0,0.470531639396343,0.468334905806882,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0.107410557042488,0,0,0,0,0,0,1.34833881285112,0.643324774124777,1.30497145982606,0,0.463044948647668,0.244736704506468,0,0.308801447160972,0.438568099157414,0.176689145945881,0.192914038270915,0.168942440653073,1.79369063011563,0,0,0,0,0.797189041880179,0.327130788511688,0,0,0,0,0,0.344429959321631,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.0642292250964595,0,0,0,0,0,0,1.42769420259154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| 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| ||
|short_description=p7@LSR | |||
}} | }} |
Latest revision as of 10:54, 17 September 2015
Short description: | p7@LSR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LSR_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_ENST00000354900, ENST00000360798, ENST00000361790, NM_015925, NM_205834, NM_205835, uc002nyl.2, uc002nym.2, uc002nyn.2, uc002nyo.2, uc010xsr.1_5end |
EntrezGene: | LSR |
HGNC: | 29572 |
UniProt: | E9PHD4A6NDW3Q86X29Q9BT33Q9BWS2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 3.90e-12 | 10 |
nephron tubule epithelial cell | 3.90e-12 | 10 |
epithelial cell | 3.87e-10 | 253 |
kidney cell | 4.85e-09 | 17 |
kidney epithelial cell | 4.85e-09 | 17 |
epithelial cell of nephron | 7.49e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
chorion | 4.29e-13 | 7 |
nephron tubule epithelium | 3.90e-12 | 10 |
extraembryonic membrane | 4.75e-12 | 14 |
membranous layer | 4.75e-12 | 14 |
urinary system structure | 3.28e-11 | 47 |
renal system | 6.54e-11 | 48 |
placenta | 8.78e-09 | 4 |
allantois | 8.78e-09 | 4 |
extraembryonic structure | 1.46e-08 | 24 |
layer of retina | 1.63e-08 | 4 |
face | 1.65e-08 | 22 |
nephron epithelium | 7.49e-08 | 15 |
renal tubule | 7.49e-08 | 15 |
nephron tubule | 7.49e-08 | 15 |
nephron | 7.49e-08 | 15 |
uriniferous tubule | 7.49e-08 | 15 |
nephrogenic mesenchyme | 7.49e-08 | 15 |
camera-type eye | 2.23e-07 | 20 |
simple eye | 2.23e-07 | 20 |
immature eye | 2.23e-07 | 20 |
ocular region | 2.23e-07 | 20 |
eyeball of camera-type eye | 2.23e-07 | 20 |
optic cup | 2.23e-07 | 20 |
optic vesicle | 2.23e-07 | 20 |
eye primordium | 2.23e-07 | 20 |
excretory tube | 2.57e-07 | 16 |
kidney epithelium | 2.57e-07 | 16 |
kidney | 4.16e-07 | 26 |
kidney mesenchyme | 4.16e-07 | 26 |
upper urinary tract | 4.16e-07 | 26 |
kidney rudiment | 4.16e-07 | 26 |
kidney field | 4.16e-07 | 26 |
eye | 5.58e-07 | 21 |
visual system | 5.58e-07 | 21 |