FFCP PHASE1:Hg19::chr12:15374283..15374294,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:15374283..15374294,-
|short_description=p4@RERG
|description=CAGE_peak_4_at_RERG_5end
|association_with_transcript=9bp_to_uc001rct.2,uc010shu.1_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=85004 | |EntrezGene=85004 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15980 | |HGNC=15980 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=9bp_to_uc001rct.2,uc010shu.1_5end | |||
|cluster_id=chr12:15374283..15374294,- | |||
|coexpression_cluster_id=C1664 | |||
|description=CAGE_peak_4_at_RERG_5end | |||
|id=chr12:15374283..15374294,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002615;8.71e-10;3!CL:0000136;8.92e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002615,9.33e-10,3 | |||
|ontology_enrichment_development_v019=UBERON:0005062;1.18e-07;4!UBERON:0007284;1.18e-07;4!UBERON:0006965;2.92e-07;2!UBERON:0004872;3.13e-07;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.09e-54!115;UBERON:0001049!2.00e-23!57;UBERON:0005068!2.00e-23!57;UBERON:0006241!2.00e-23!57;UBERON:0007135!2.00e-23!57;UBERON:0003075!4.83e-21!86;UBERON:0007284!4.83e-21!86;UBERON:0005743!2.13e-20!86;UBERON:0001017!6.28e-20!82;UBERON:0002616!1.93e-19!59;UBERON:0002346!2.11e-19!90;UBERON:0000073!6.21e-19!94;UBERON:0001016!6.21e-19!94;UBERON:0000955!4.07e-18!69;UBERON:0006238!4.07e-18!69;UBERON:0003080!7.40e-18!42;UBERON:0002780!6.19e-17!41;UBERON:0001890!6.19e-17!41;UBERON:0006240!6.19e-17!41;UBERON:0001950!9.50e-15!20;UBERON:0001869!1.63e-14!32;UBERON:0001893!2.12e-14!34;UBERON:0002020!2.26e-14!34;UBERON:0003528!2.26e-14!34;UBERON:0002619!2.27e-14!22;UBERON:0003056!5.80e-14!61;UBERON:0002791!1.59e-13!33;UBERON:0000481!4.62e-12!347;UBERON:0000956!5.01e-12!25;UBERON:0000203!5.01e-12!25;UBERON:0004121!1.58e-11!169;UBERON:0000153!3.19e-11!129;UBERON:0007811!3.19e-11!129;UBERON:0000924!7.23e-11!173;UBERON:0006601!7.23e-11!173;UBERON:0000475!4.10e-10!365;UBERON:0000064!5.46e-10!219;UBERON:0000033!6.88e-10!123;UBERON:0000062!8.19e-10!511;UBERON:0000468!1.33e-08!659;UBERON:0000477!3.14e-08!286;UBERON:0001443!4.93e-08!11;UBERON:0000922!1.37e-07!612;UBERON:0000310!6.23e-07!10;UBERON:0002050!6.91e-07!605;UBERON:0005423!6.91e-07!605;UBERON:0003076!8.68e-07!15;UBERON:0003057!8.68e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000200;7.65e-12;6!UBERON:0003978;4.39e-10;3!UBERON:0000946;4.39e-10;3!UBERON:0001950;8.22e-10;20!UBERON:0002619;8.18e-09;22!UBERON:0007023;6.50e-08;114!UBERON:0000956;1.31e-07;25!UBERON:0000203;1.31e-07;25!UBERON:0002133;1.44e-07;2!UBERON:0002081;4.63e-07;2!UBERON:0001443;8.06e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.22e-26,114;UBERON:0000200,2.60e-11,6;UBERON:0003978,3.86e-10,3;UBERON:0009751,3.86e-10,3;UBERON:0000946,3.86e-10,3;UBERON:0002523,3.86e-10,3;UBERON:0005983,3.86e-10,3;UBERON:0002165,3.86e-10,3;UBERON:0002062,3.86e-10,3;UBERON:0007280,3.86e-10,3;UBERON:0001950,9.47e-10,20;UBERON:0002619,9.28e-09,22;UBERON:0000956,1.46e-07,25;UBERON:0000203,1.46e-07,25;UBERON:0002133,1.70e-07,2;UBERON:0003075,4.15e-07,82;UBERON:0007284,4.15e-07,82;UBERON:0002081,5.34e-07,2;UBERON:0010227,5.34e-07,2;UBERON:0001017,5.88e-07,81;UBERON:0001869,6.34e-07,32;UBERON:0000955,7.84e-07,68;UBERON:0006238,7.84e-07,68;UBERON:0001049,8.16e-07,56;UBERON:0005068,8.16e-07,56;UBERON:0006241,8.16e-07,56;UBERON:0007135,8.16e-07,56;UBERON:0001443,8.31e-07,11 | |||
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| ||
|short_description=p4@RERG | |||
}} | }} |
Latest revision as of 14:46, 17 September 2015
Short description: | p4@RERG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RERG_5end |
Coexpression cluster: | C1664_uterus_epididymis_aorta_cervix_caudate_Adipocyte_ductus |
Association with transcript: | 9bp_to_uc001rct.2, uc010shu.1_5end |
EntrezGene: | RERG |
HGNC: | 15980 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adipocyte of omentum tissue | 9.33e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.22e-26 | 114 |
gyrus | 2.60e-11 | 6 |
valve | 3.86e-10 | 3 |
cardiac mesenchyme | 3.86e-10 | 3 |
cardial valve | 3.86e-10 | 3 |
tunica intima | 3.86e-10 | 3 |
heart layer | 3.86e-10 | 3 |
endocardium | 3.86e-10 | 3 |
endocardial cushion | 3.86e-10 | 3 |
presumptive endocardium | 3.86e-10 | 3 |
neocortex | 9.47e-10 | 20 |
regional part of cerebral cortex | 9.28e-09 | 22 |
cerebral cortex | 1.46e-07 | 25 |
pallium | 1.46e-07 | 25 |
atrioventricular valve | 1.70e-07 | 2 |
neural plate | 4.15e-07 | 82 |
presumptive neural plate | 4.15e-07 | 82 |
cardiac atrium | 5.34e-07 | 2 |
future cardiac atrium | 5.34e-07 | 2 |
central nervous system | 5.88e-07 | 81 |
cerebral hemisphere | 6.34e-07 | 32 |
brain | 7.84e-07 | 68 |
future brain | 7.84e-07 | 68 |
neural tube | 8.16e-07 | 56 |
neural rod | 8.16e-07 | 56 |
future spinal cord | 8.16e-07 | 56 |
neural keel | 8.16e-07 | 56 |
chest | 8.31e-07 | 11 |