FFCP PHASE1:Hg19::chr11:3253635..3253658,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=116534 | |EntrezGene=116534 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30694 | |HGNC=30694 | ||
|TSSclassifier=strong | |||
|UniProt=Q86SM8 | |UniProt=Q86SM8 | ||
|association_with_transcript=-19bp_to_ENST00000389832,ENST00000436689,NM_001039165,uc001lxq.3_5end | |association_with_transcript=-19bp_to_ENST00000389832,ENST00000436689,NM_001039165,uc001lxq.3_5end | ||
|cluster_id=chr11:3253635..3253658,- | |||
|coexpression_cluster_id=C275 | |coexpression_cluster_id=C275 | ||
|description=CAGE_peak_1_at_MRGPRE_5end | |description=CAGE_peak_1_at_MRGPRE_5end | ||
|id=chr11:3253635..3253658,- | |id=chr11:3253635..3253658,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002537;1.21e-20;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002537,8.98e-21,5 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.14e-09;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5409;1.80e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.04e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.59e-45!115;UBERON:0001049!2.19e-22!57;UBERON:0005068!2.19e-22!57;UBERON:0006241!2.19e-22!57;UBERON:0007135!2.19e-22!57;UBERON:0000073!4.31e-18!94;UBERON:0001016!4.31e-18!94;UBERON:0003075!3.79e-17!86;UBERON:0007284!3.79e-17!86;UBERON:0005743!6.95e-17!86;UBERON:0001017!1.26e-16!82;UBERON:0002616!3.32e-16!59;UBERON:0002346!5.37e-16!90;UBERON:0002298!1.66e-14!8;UBERON:0000955!6.46e-14!69;UBERON:0006238!6.46e-14!69;UBERON:0003080!4.55e-13!42;UBERON:0002780!8.22e-12!41;UBERON:0001890!8.22e-12!41;UBERON:0006240!8.22e-12!41;UBERON:0003076!1.74e-11!15;UBERON:0003057!1.74e-11!15;UBERON:0004121!2.93e-10!169;UBERON:0002020!5.73e-10!34;UBERON:0003528!5.73e-10!34;UBERON:0000924!8.55e-10!173;UBERON:0006601!8.55e-10!173;UBERON:0003056!1.02e-08!61;UBERON:0001893!1.60e-08!34;UBERON:0002619!1.60e-08!22;UBERON:0000988!5.30e-08!3;UBERON:0006331!7.79e-08!3;UBERON:0001869!9.70e-08!32;UBERON:0002240!1.04e-07!3;UBERON:0000033!1.17e-07!123;UBERON:0000153!1.18e-07!129;UBERON:0007811!1.18e-07!129;UBERON:0002791!2.07e-07!33;UBERON:0000956!2.84e-07!25;UBERON:0000203!2.84e-07!25;UBERON:0000349!5.87e-07!5;UBERON:0004111!6.06e-07!241;UBERON:0004733!8.59e-07!12;UBERON:0002028!8.59e-07!12;UBERON:0007277!8.59e-07!12 | |ontology_enrichment_uberon=UBERON:0007023!5.59e-45!115;UBERON:0001049!2.19e-22!57;UBERON:0005068!2.19e-22!57;UBERON:0006241!2.19e-22!57;UBERON:0007135!2.19e-22!57;UBERON:0000073!4.31e-18!94;UBERON:0001016!4.31e-18!94;UBERON:0003075!3.79e-17!86;UBERON:0007284!3.79e-17!86;UBERON:0005743!6.95e-17!86;UBERON:0001017!1.26e-16!82;UBERON:0002616!3.32e-16!59;UBERON:0002346!5.37e-16!90;UBERON:0002298!1.66e-14!8;UBERON:0000955!6.46e-14!69;UBERON:0006238!6.46e-14!69;UBERON:0003080!4.55e-13!42;UBERON:0002780!8.22e-12!41;UBERON:0001890!8.22e-12!41;UBERON:0006240!8.22e-12!41;UBERON:0003076!1.74e-11!15;UBERON:0003057!1.74e-11!15;UBERON:0004121!2.93e-10!169;UBERON:0002020!5.73e-10!34;UBERON:0003528!5.73e-10!34;UBERON:0000924!8.55e-10!173;UBERON:0006601!8.55e-10!173;UBERON:0003056!1.02e-08!61;UBERON:0001893!1.60e-08!34;UBERON:0002619!1.60e-08!22;UBERON:0000988!5.30e-08!3;UBERON:0006331!7.79e-08!3;UBERON:0001869!9.70e-08!32;UBERON:0002240!1.04e-07!3;UBERON:0000033!1.17e-07!123;UBERON:0000153!1.18e-07!129;UBERON:0007811!1.18e-07!129;UBERON:0002791!2.07e-07!33;UBERON:0000956!2.84e-07!25;UBERON:0000203!2.84e-07!25;UBERON:0000349!5.87e-07!5;UBERON:0004111!6.06e-07!241;UBERON:0004733!8.59e-07!12;UBERON:0002028!8.59e-07!12;UBERON:0007277!8.59e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0002298;4.71e-66;6!UBERON:0000988;5.50e-34;3!UBERON:0001896;7.08e-34;3!UBERON:0005290;7.08e-34;3!UBERON:0004733;2.12e-33;12!UBERON:0002028;2.12e-33;12!UBERON:0004732;6.97e-31;13!UBERON:0000305;4.69e-15;7!UBERON:0002148;1.21e-13;2!UBERON:0006331;1.21e-13;2!UBERON:0009662;1.21e-13;2!UBERON:0002680;4.67e-12;9!UBERON:0001895;4.67e-12;9!UBERON:0005631;7.67e-11;10!UBERON:0000158;7.67e-11;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,5.13e-66,6;UBERON:0000988,6.51e-34,3;UBERON:0001896,6.51e-34,3;UBERON:0005290,6.51e-34,3;UBERON:0010096,6.51e-34,3;UBERON:0004733,2.21e-33,12;UBERON:0002028,2.21e-33,12;UBERON:0007277,2.21e-33,12;UBERON:0004732,7.24e-31,13;UBERON:0003076,7.74e-27,15;UBERON:0003057,7.74e-27,15;UBERON:0000305,3.79e-15,7;UBERON:0002148,1.37e-13,2;UBERON:0006331,1.37e-13,2;UBERON:0009662,1.37e-13,2;UBERON:0004871,2.20e-13,8;UBERON:0002680,4.94e-12,9;UBERON:0001895,4.94e-12,9;UBERON:0010092,4.94e-12,9;UBERON:0005631,4.66e-08,14;UBERON:0000158,4.66e-08,14;UBERON:0000073,8.61e-08,53;UBERON:0002616,8.61e-08,53;UBERON:0003075,1.01e-07,82;UBERON:0007284,1.01e-07,82;UBERON:0001049,2.12e-07,56;UBERON:0005068,2.12e-07,56;UBERON:0006241,2.12e-07,56;UBERON:0007135,2.12e-07,56;UBERON:0002346,2.26e-07,86;UBERON:0004121,5.65e-07,171;UBERON:0000924,5.65e-07,171;UBERON:0006601,5.65e-07,171 | |||
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| ||
|short_description=p1@MRGPRE | |short_description=p1@MRGPRE | ||
}} | }} |
Latest revision as of 15:38, 17 September 2015
Short description: | p1@MRGPRE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MRGPRE_5end |
Coexpression cluster: | C275_pons_medulla_cerebellum_locus_thalamus_diencephalon_spinal |
Association with transcript: | -19bp_to_ENST00000389832, ENST00000436689, NM_001039165, uc001lxq.3_5end |
EntrezGene: | MRGPRE |
HGNC: | 30694 |
UniProt: | Q86SM8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 8.98e-21 | 5 |
Ontology term | p-value | n |
---|---|---|
brainstem | 5.13e-66 | 6 |
pons | 6.51e-34 | 3 |
medulla oblongata | 6.51e-34 | 3 |
myelencephalon | 6.51e-34 | 3 |
future myelencephalon | 6.51e-34 | 3 |
segmental subdivision of hindbrain | 2.21e-33 | 12 |
hindbrain | 2.21e-33 | 12 |
presumptive hindbrain | 2.21e-33 | 12 |
segmental subdivision of nervous system | 7.24e-31 | 13 |
posterior neural tube | 7.74e-27 | 15 |
chordal neural plate | 7.74e-27 | 15 |
amnion | 3.79e-15 | 7 |
locus ceruleus | 1.37e-13 | 2 |
brainstem nucleus | 1.37e-13 | 2 |
hindbrain nucleus | 1.37e-13 | 2 |
somatic layer of lateral plate mesoderm | 2.20e-13 | 8 |
regional part of metencephalon | 4.94e-12 | 9 |
metencephalon | 4.94e-12 | 9 |
future metencephalon | 4.94e-12 | 9 |
extraembryonic membrane | 4.66e-08 | 14 |
membranous layer | 4.66e-08 | 14 |
regional part of nervous system | 8.61e-08 | 53 |
regional part of brain | 8.61e-08 | 53 |
neural plate | 1.01e-07 | 82 |
presumptive neural plate | 1.01e-07 | 82 |
neural tube | 2.12e-07 | 56 |
neural rod | 2.12e-07 | 56 |
future spinal cord | 2.12e-07 | 56 |
neural keel | 2.12e-07 | 56 |
neurectoderm | 2.26e-07 | 86 |
ectoderm-derived structure | 5.65e-07 | 171 |
ectoderm | 5.65e-07 | 171 |
presumptive ectoderm | 5.65e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.04e-07 | 4 |