FFCP PHASE1:Hg19::chr17:7493405..7493419,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6665 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11196 | |||
|TSSclassifier=strong | |||
|UniProt=O60248 | |||
|association_with_transcript=-15bp_to_ENST00000538513,uc002ghy.1_5end | |||
|cluster_id=chr17:7493405..7493419,- | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_1_at_SOX15_5end | |||
|id=chr17:7493405..7493419,- | |||
|ontology_enrichment_celltype=CL:0000066!1.01e-31!254;CL:0002076!1.94e-14!43;CL:0002159!9.47e-12!13;CL:0002077!1.42e-09!33;CL:0000223!2.41e-09!59;CL:0002368!4.73e-09!13;CL:0002251!3.31e-08!21;CL:0000076!3.37e-08!62;CL:0000039!4.32e-07!7;CL:0000586!4.32e-07!7;CL:0000240!4.90e-07!6;CL:0000311!4.90e-07!6;CL:0000079!4.90e-07!6;CL:0000237!4.90e-07!6;CL:0000036!4.90e-07!6;CL:0000357!4.90e-07!6;CL:0000114!4.90e-07!6;CL:0000362!7.04e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002159;1.27e-15;14!CL:0002076;1.54e-12;42!CL:0002368;1.05e-11;13!CL:0000039;7.90e-10;7!CL:0000586;7.90e-10;7!CL:0000240;9.18e-10;6!CL:0000311;9.18e-10;6!CL:0000079;9.18e-10;6!CL:0000237;9.18e-10;6!CL:0002077;1.27e-09;34!CL:1000507;5.66e-09;10!CL:1000494;5.66e-09;10!CL:0002251;1.28e-08;20!CL:0000362;1.48e-08;9!CL:0000312;2.51e-08;5!CL:0000622;1.30e-07;5!CL:0002322;2.02e-07;5!CL:0000349;5.80e-07;19!CL:0000244;7.43e-07;4!CL:0000731;7.43e-07;4!CL:0002202;7.90e-07;9!CL:0002632;7.90e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.01e-33,253;CL:0002076,5.96e-16,42;CL:0002159,1.29e-15,14;CL:0002368,1.05e-11,13;CL:0000223,1.49e-11,58;CL:0002077,4.11e-11,34;CL:0000039,7.79e-10,7;CL:0000586,7.79e-10,7;CL:0000240,9.39e-10,6;CL:0000311,9.39e-10,6;CL:0000079,9.39e-10,6;CL:0000237,9.39e-10,6;CL:0000036,9.39e-10,6;CL:0000357,9.39e-10,6;CL:0000114,9.39e-10,6;CL:0000076,6.11e-09,63;CL:1000507,6.37e-09,10;CL:1000494,6.37e-09,10;CL:0002251,1.29e-08,20;CL:0000362,1.50e-08,9;CL:0000312,2.57e-08,5;CL:0000622,1.29e-07,5;CL:0002322,1.92e-07,5;CL:0000349,5.58e-07,19;CL:0000244,7.55e-07,4;CL:0000731,7.55e-07,4;CL:0002202,7.86e-07,9;CL:0002632,7.86e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000357;9.18e-10;6!CL:0000114;9.18e-10;6!CL:0000223;9.47e-07;58 | |||
|ontology_enrichment_disease=DOID:305!6.78e-10!106;DOID:1749!5.51e-09!14;DOID:0050687!2.95e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.12e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,5.21e-10,14;DOID:305,1.64e-08,106;DOID:0050687,9.22e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0001004!5.59e-16!72;UBERON:0000064!1.30e-12!219;UBERON:0000065!1.88e-12!53;UBERON:0004119!2.82e-12!169;UBERON:0000925!2.82e-12!169;UBERON:0006595!2.82e-12!169;UBERON:0000161!3.51e-11!35;UBERON:0001008!5.04e-11!45;UBERON:0006554!1.56e-10!44;UBERON:0000072!2.47e-10!46;UBERON:0000062!2.32e-09!511;UBERON:0003064!5.44e-09!37;UBERON:0000464!7.74e-09!104;UBERON:0008947!7.81e-09!38;UBERON:0003258!7.81e-09!38;UBERON:0000077!8.04e-09!130;UBERON:0005631!2.56e-08!14;UBERON:0000158!2.56e-08!14;UBERON:0000166!2.58e-08!21;UBERON:0000922!5.15e-08!612;UBERON:0001007!9.19e-08!155;UBERON:0001555!9.19e-08!155;UBERON:0007026!9.19e-08!155;UBERON:0000468!1.89e-07!659;UBERON:0004921!2.40e-07!129;UBERON:0004185!2.40e-07!129;UBERON:0001557!3.46e-07!19;UBERON:0000467!5.50e-07!625;UBERON:0000063!6.20e-07!97;UBERON:0000480!6.73e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;1.46e-10;44!UBERON:0000072;5.92e-10;37!UBERON:0004211;5.66e-09;10!UBERON:0009773;5.66e-09;10!UBERON:0001231;5.66e-09;10!UBERON:0004810;5.66e-09;10!UBERON:0006554;8.69e-09;30!UBERON:0001008;8.69e-09;30!UBERON:0001737;9.73e-09;9!UBERON:0001557;9.73e-09;9!UBERON:0001004;2.04e-08;65!UBERON:0005631;6.43e-08;10!UBERON:0000158;6.43e-08;10!UBERON:0000365;8.83e-08;5!UBERON:0000486;1.61e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,2.44e-17,74;UBERON:0000065,2.67e-15,54;UBERON:0004119,6.77e-14,160;UBERON:0000925,6.77e-14,160;UBERON:0006595,6.77e-14,160;UBERON:0000072,6.26e-13,47;UBERON:0008947,9.98e-11,38;UBERON:0003258,9.98e-11,38;UBERON:0005631,2.01e-10,14;UBERON:0000158,2.01e-10,14;UBERON:0001008,4.17e-10,48;UBERON:0006554,1.69e-09,47;UBERON:0001557,1.97e-09,19;UBERON:0003102,5.51e-09,99;UBERON:0004810,6.37e-09,10;UBERON:0001737,8.61e-09,9;UBERON:0000161,1.46e-08,36;UBERON:0001007,2.18e-08,145;UBERON:0001555,2.18e-08,145;UBERON:0007026,2.18e-08,145;UBERON:0000365,9.09e-08,5;UBERON:0001041,1.49e-07,87;UBERON:0004921,1.60e-07,118;UBERON:0000166,2.62e-07,22;UBERON:0003124,4.03e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,8.37361401566913,21.6256958408871,23.2114940841039,0,0,0,0,0,0,0,0,0,0.286235987131057,0.684372125364421,0,0,0,0,0,0,0.928896739896456,385.23749305667,384.037546442269,218.894374018738,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,3.63239701580021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.261958150995425,469.576626609087,438.267211371196,0,0,0,0.238490624305342,0,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,235.926882209111,0,0,0,0,1.41867352879343,1.68203280042692,0,0,0,0,0,0,0,0,0,4.56377457235559,0,0,0,0.280901613404497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,224.182589669424,194.467983981265,224.281193594201,31.7131635936948,27.8312513475119,27.8865462886844,25.189636368735,23.2135182805578,0.36497735907583,0,0,0,0,0,1.8929088006375,1.34867752062481,1.68707720918437,1.10293972732394,2.61455332910887,1.66089433377768,1.61797569792197,1.37355025587742,3.07797725557112,0,0,0,0,0,0,0,0,0.491953754172454,0,325.190095665758,293.368576002387,291.232433076495,159.529891008146,0,0,0,0,0,0,0,0,0,0,0,0,0,189.34234465329,112.883990149634,130.71663965748,9.85143749731331,58.7080555798203,129.583345557841,0,0,0.621984346622316,0.144119953416961,0.25248486685276,0.380987365753014,0,0,13.6857956818164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,2.0694614258501,0,0.184369168541703,0,0,0,0,0,0,149.441892723006,14.9791895559447,49.5920081060676,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,225.168766150589,200.736555880254,0,0,0.393373244878272,5.86559496779635,3.15762882128101,9.41219723012226,14.6139224653261,1.26661954671451,0,0,0.215915916102139,0,0.812839312631559,3.01013864312912,7.64628819135115,8.31076008928724,27.7604695855501,0,0,3.07740150139667,0.328014645699706,0.650756789328606,0,0,0,305.509266213964,363.383677534415,0,0.096670718292122,0,0,0.413509717453592,0,0,0.426133137080504,0,104.625351423499,115.121850351699,31.6479526986569,110.767770036827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,170.601805862333,235.946400988597,332.117503827034,0.282431402330337,146.802332080889,97.7134558872228,123.273582683196,22.0534464198681,0,0,0,0,0,0,0,0,9.08004604583522,0,267.583915851287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,57.2986763370456,3.8605408508243,46.9955874211825,0,0,0,0,0,0.796991953004279,0,0,0,0,0,0.0898683511473268,2.86433879480975,0,2.46608514092334,0,0,0,0,0,0.260427761085233,0,0,100.13823449124,0,39.2403551734774,0,0,0,0,0,0,0.884634079449797,0.591095237907095,0,0,126.875607293529,6.23297093880756,0,4.6112780877612,15.4383148384808,60.2992914167145,29.6671078550685,3.84709892287822,14.3919389525031,0,0,0,0,0,0,0,0,0,0.163232808159148,0.141353071433941,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,83.7444569029344,0,0,0,0,0,0.450970258243478,0.103688191397247,0,0,0,0,0,0,0,100.344214952323,139.991204181287,0.52418000472609,1.20390222730132,0,0.146178634172371,0.164230914106418,56.5445966127485,0,9.0392296312213,0,0,0,87.2159166997221,0.320635281006135,0,0.19980960958213,0,0,0,0,0,84.6141584274295,0.951329442515298,0.836822770498666,0,0,0.600420288709789,0,0,0.429765441419957,0,0,0,0,0.599037001496973,0.429226048136571,0,0.268733889946905,0,0,0,0,0,0,0,0,0.272406812223151,25.398997457473,27.7829661926412,27.8345026479554,1.349843349309,79.7016013194688,0,212.330157250335,0.236417121897595,0.367182116944987,0.316801009558219,0,161.208765748334,0,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,106.427068369817,0.533937062838473,0,0,0,0,0,239.377971663818,0,0,0,0,0,0,0,0,3.44045517414043,0.554645257684261,0.124192805882767,0.138348634936231,0.124980407962107,0,0,0,11.708372645172,12.3182874319201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,12.8664954824955,0.260994291965212,0,3.47283711485751,0.244736704506468,0.179088841081487,33.041754846224,0.219284049578707,0,5.40159307158561,27.3686753857978,0,0,0,0,0,0,0.163565394255844,0,0,7.39592431755195,0,0,0,3.40509572140102,0,206.042514870742,149.920619667946,0,0,0.157265941855896,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207471757392654,0,0,37.7868716228949,0.235939446695481,137.938306088303,10.3973099535304,0,0,0,0.150420656698515,0,0,10.7381744737383,0,0,0,0,0,0,0.546974809018219,0.548257766857182,10.9166459245645,0,22.2306624092896,0.535701835878287,0.672567444437648,1.21393120847326,0.91064876540519,0.975726071789027,0,0,0,0.0657727735628491,0.472775363535873,0.778619813244484,1.96232732126285,0,3.92381028639305,0,0,0,0.571812353413251,0,0,0,0,5.59483643240199,10.4138271027309,9.67763526539729,0.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| |||
|short_description=p1@SOX15 | |||
}} |
Latest revision as of 17:37, 17 September 2015
Short description: | p1@SOX15 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SOX15_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | -15bp_to_ENST00000538513, uc002ghy.1_5end |
EntrezGene: | SOX15 |
HGNC: | 11196 |
UniProt: | O60248 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.01e-33 | 253 |
endo-epithelial cell | 5.96e-16 | 42 |
general ecto-epithelial cell | 1.29e-15 | 14 |
respiratory epithelial cell | 1.05e-11 | 13 |
endodermal cell | 1.49e-11 | 58 |
ecto-epithelial cell | 4.11e-11 | 34 |
germ line cell | 7.79e-10 | 7 |
germ cell | 7.79e-10 | 7 |
stratified squamous epithelial cell | 9.39e-10 | 6 |
keratin accumulating cell | 9.39e-10 | 6 |
stratified epithelial cell | 9.39e-10 | 6 |
keratinizing barrier epithelial cell | 9.39e-10 | 6 |
epithelial fate stem cell | 9.39e-10 | 6 |
stratified epithelial stem cell | 9.39e-10 | 6 |
surface ectodermal cell | 9.39e-10 | 6 |
squamous epithelial cell | 6.11e-09 | 63 |
kidney tubule cell | 6.37e-09 | 10 |
nephron tubule epithelial cell | 6.37e-09 | 10 |
epithelial cell of alimentary canal | 1.29e-08 | 20 |
epidermal cell | 1.50e-08 | 9 |
keratinocyte | 2.57e-08 | 5 |
acinar cell | 1.29e-07 | 5 |
embryonic stem cell | 1.92e-07 | 5 |
extraembryonic cell | 5.58e-07 | 19 |
transitional epithelial cell | 7.55e-07 | 4 |
urothelial cell | 7.55e-07 | 4 |
epithelial cell of tracheobronchial tree | 7.86e-07 | 9 |
epithelial cell of lower respiratory tract | 7.86e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
respiratory system | 2.44e-17 | 74 |
respiratory tract | 2.67e-15 | 54 |
endoderm-derived structure | 6.77e-14 | 160 |
endoderm | 6.77e-14 | 160 |
presumptive endoderm | 6.77e-14 | 160 |
segment of respiratory tract | 6.26e-13 | 47 |
respiratory primordium | 9.98e-11 | 38 |
endoderm of foregut | 9.98e-11 | 38 |
extraembryonic membrane | 2.01e-10 | 14 |
membranous layer | 2.01e-10 | 14 |
renal system | 4.17e-10 | 48 |
urinary system structure | 1.69e-09 | 47 |
upper respiratory tract | 1.97e-09 | 19 |
surface structure | 5.51e-09 | 99 |
nephron tubule epithelium | 6.37e-09 | 10 |
larynx | 8.61e-09 | 9 |
orifice | 1.46e-08 | 36 |
digestive system | 2.18e-08 | 145 |
digestive tract | 2.18e-08 | 145 |
primitive gut | 2.18e-08 | 145 |
urothelium | 9.09e-08 | 5 |
foregut | 1.49e-07 | 87 |
subdivision of digestive tract | 1.60e-07 | 118 |
oral opening | 2.62e-07 | 22 |
chorion | 4.03e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.21e-10 | 14 |
carcinoma | 1.64e-08 | 106 |
cell type cancer | 9.22e-07 | 143 |