FFCP PHASE1:Hg19::chr1:40781025..40781038,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:40781025..40781038,- to FFCP PHASE1:Hg19::chr1:40781025..40781038,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1298 | |EntrezGene=1298 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2218 | |HGNC=2218 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=71bp_to_ENST00000488463_5end | |||
|cluster_id=chr1:40781025..40781038,- | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_8_at_COL9A2_5end | |||
|id=chr1:40781025..40781038,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000123;2.22e-29;2!CL:0000242;2.22e-29;2!CL:0000312;2.25e-12;5!CL:0000240;1.81e-10;6!CL:0000311;1.81e-10;6!CL:0000079;1.81e-10;6!CL:0000237;1.81e-10;6!CL:0000771;1.50e-08;2!CL:0000362;2.86e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.44e-29,2;CL:0000312,1.89e-12,5;CL:0000240,1.57e-10,6;CL:0000311,1.57e-10,6;CL:0000079,1.57e-10,6;CL:0000237,1.57e-10,6;CL:0000036,1.57e-10,6;CL:0000357,1.57e-10,6;CL:0000114,1.57e-10,6;CL:0000771,1.50e-08,2;CL:0000362,2.60e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0006222;2.75e-15;1!UBERON:0005425;2.75e-15;1!CL:0000357;1.81e-10;6!CL:0000114;1.81e-10;6 | |||
|ontology_enrichment_disease=DOID:0060058!1.41e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:0060060;1.34e-15;1!DOID:0060061;1.34e-15;1!DOID:8691;1.34e-15;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,1.54e-15,1;DOID:0060061,1.54e-15,1;DOID:8691,1.54e-15,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!7.46e-21!57;UBERON:0005068!7.46e-21!57;UBERON:0006241!7.46e-21!57;UBERON:0007135!7.46e-21!57;UBERON:0005743!1.19e-19!86;UBERON:0000073!4.26e-19!94;UBERON:0001016!4.26e-19!94;UBERON:0001017!1.95e-18!82;UBERON:0003075!3.78e-17!86;UBERON:0007284!3.78e-17!86;UBERON:0002616!8.20e-17!59;UBERON:0002020!9.92e-17!34;UBERON:0003528!9.92e-17!34;UBERON:0001893!1.16e-16!34;UBERON:0000153!3.03e-16!129;UBERON:0007811!3.03e-16!129;UBERON:0002780!3.34e-16!41;UBERON:0001890!3.34e-16!41;UBERON:0006240!3.34e-16!41;UBERON:0002346!6.45e-16!90;UBERON:0003080!1.15e-15!42;UBERON:0002791!1.46e-15!33;UBERON:0000955!2.42e-15!69;UBERON:0006238!2.42e-15!69;UBERON:0000033!4.44e-15!123;UBERON:0004121!2.76e-14!169;UBERON:0003056!3.05e-14!61;UBERON:0001869!4.45e-14!32;UBERON:0000924!1.25e-13!173;UBERON:0006601!1.25e-13!173;UBERON:0002308!3.06e-12!9;UBERON:0000125!3.06e-12!9;UBERON:0007023!3.59e-11!115;UBERON:0009663!4.10e-09!7;UBERON:0000956!3.25e-08!25;UBERON:0000203!3.25e-08!25;UBERON:0002298!5.41e-08!8;UBERON:0001950!1.09e-07!20;UBERON:0002420!7.14e-07!9;UBERON:0007245!7.14e-07!9;UBERON:0010009!7.14e-07!9;UBERON:0010011!7.14e-07!9;UBERON:0000454!7.14e-07!9;UBERON:0002619!8.35e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0005162;9.30e-29;2!UBERON:0000122;9.30e-29;2!UBERON:0002336;2.75e-15;1!UBERON:0000941;2.75e-15;1!UBERON:0001785;2.75e-15;1!UBERON:0002464;2.75e-15;1!UBERON:0004904;2.75e-15;1!UBERON:0011215;2.75e-15;1!UBERON:0001018;2.75e-15;1!UBERON:0001021;2.75e-15;1!UBERON:0002473;2.75e-15;1!UBERON:0005340;2.75e-15;1!UBERON:0003544;2.75e-15;1!UBERON:0005970;2.75e-15;1!UBERON:0002316;2.75e-15;1!UBERON:0001020;2.75e-15;1!UBERON:0002437;2.75e-15;1!UBERON:0002331;1.00e-13;10!UBERON:0000178;2.42e-09;15!UBERON:0000179;2.42e-09;15!UBERON:0000463;2.42e-09;15!UBERON:0003714;2.67e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005162,1.07e-28,2;UBERON:0000122,1.07e-28,2;UBERON:0000941,2.75e-15,1;UBERON:0001785,2.75e-15,1;UBERON:0002464,2.75e-15,1;UBERON:0004904,2.75e-15,1;UBERON:0001021,2.75e-15,1;UBERON:0003902,2.75e-15,1;UBERON:0005425,2.75e-15,1;UBERON:0002336,3.17e-15,1;UBERON:0011215,3.17e-15,1;UBERON:0001018,3.17e-15,1;UBERON:0002473,3.17e-15,1;UBERON:0005340,3.17e-15,1;UBERON:0003544,3.17e-15,1;UBERON:0005970,3.17e-15,1;UBERON:0002316,3.17e-15,1;UBERON:0001020,3.17e-15,1;UBERON:0002437,3.17e-15,1;UBERON:0002331,1.00e-13,10;UBERON:0000358,1.00e-13,10;UBERON:0000307,1.00e-13,10;UBERON:0000091,1.00e-13,10;UBERON:0000087,1.00e-13,10;UBERON:0007010,1.00e-13,10;UBERON:0007806,1.00e-13,10;UBERON:0008780,1.00e-13,10;UBERON:0005728,1.00e-13,10;UBERON:0000178,2.42e-09,15;UBERON:0000179,2.42e-09,15;UBERON:0000463,2.42e-09,15;UBERON:0003714,2.67e-08,2 | |||
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| ||
|short_description=p8@COL9A2 | |||
}} | }} |
Latest revision as of 01:03, 18 September 2015
Short description: | p8@COL9A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_COL9A2_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | 71bp_to_ENST00000488463_5end |
EntrezGene: | COL9A2 |
HGNC: | 2218 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.44e-29 | 2 |
keratinocyte | 1.89e-12 | 5 |
stratified squamous epithelial cell | 1.57e-10 | 6 |
keratin accumulating cell | 1.57e-10 | 6 |
stratified epithelial cell | 1.57e-10 | 6 |
keratinizing barrier epithelial cell | 1.57e-10 | 6 |
epithelial fate stem cell | 1.57e-10 | 6 |
stratified epithelial stem cell | 1.57e-10 | 6 |
surface ectodermal cell | 1.57e-10 | 6 |
eosinophil | 1.50e-08 | 2 |
epidermal cell | 2.60e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
multi cell component structure | 1.07e-28 | 2 |
neuron projection bundle | 1.07e-28 | 2 |
cranial nerve II | 2.75e-15 | 1 |
cranial nerve | 2.75e-15 | 1 |
nerve trunk | 2.75e-15 | 1 |
nerve connecting eye with brain | 2.75e-15 | 1 |
nerve | 2.75e-15 | 1 |
retinal neural layer | 2.75e-15 | 1 |
presumptive neural retina | 2.75e-15 | 1 |
corpus callosum | 3.17e-15 | 1 |
central nervous system cell part cluster | 3.17e-15 | 1 |
axon tract | 3.17e-15 | 1 |
intercerebral commissure | 3.17e-15 | 1 |
dorsal telencephalic commissure | 3.17e-15 | 1 |
brain white matter | 3.17e-15 | 1 |
brain commissure | 3.17e-15 | 1 |
white matter | 3.17e-15 | 1 |
nervous system commissure | 3.17e-15 | 1 |
cerebral hemisphere white matter | 3.17e-15 | 1 |
umbilical cord | 1.00e-13 | 10 |
blastocyst | 1.00e-13 | 10 |
blastula | 1.00e-13 | 10 |
bilaminar disc | 1.00e-13 | 10 |
inner cell mass | 1.00e-13 | 10 |
cleaving embryo | 1.00e-13 | 10 |
connecting stalk | 1.00e-13 | 10 |
inner cell mass derived epiblast | 1.00e-13 | 10 |
extraembryonic mesoderm | 1.00e-13 | 10 |
blood | 2.42e-09 | 15 |
haemolymphatic fluid | 2.42e-09 | 15 |
organism substance | 2.42e-09 | 15 |
neural tissue | 2.67e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 1.54e-15 | 1 |
cutaneous T cell lymphoma | 1.54e-15 | 1 |
mycosis fungoides | 1.54e-15 | 1 |