FFCP PHASE1:Hg19::chr6:32146268..32146280,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6048 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10068 | |||
|TSSclassifier=strong | |||
|UniProt=E7EM95 | |||
|association_with_transcript=0bp_to_ENST00000427134_5end | |||
|cluster_id=chr6:32146268..32146280,+ | |||
|coexpression_cluster_id=C600 | |||
|description=CAGE_peak_2_at_RNF5_5end | |||
|id=chr6:32146268..32146280,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.76e-23!42;CL:0000763!3.09e-21!112;CL:0000049!3.09e-21!112;CL:0000860!6.27e-21!45;CL:0000839!1.30e-20!70;CL:0000557!5.20e-20!71;CL:0000766!2.39e-18!76;CL:0002009!2.18e-17!65;CL:0000037!3.50e-17!172;CL:0000566!3.50e-17!172;CL:0002032!2.78e-16!165;CL:0000837!2.78e-16!165;CL:0000738!3.57e-16!140;CL:0002194!1.56e-15!63;CL:0000576!1.56e-15!63;CL:0000040!1.56e-15!63;CL:0000559!1.56e-15!63;CL:0002031!3.02e-15!124;CL:0000988!3.35e-15!182;CL:0002087!1.67e-09!119;CL:0000453!1.41e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0000453;1.36e-12;5!CL:0000451;2.04e-07;10!CL:0000097;5.56e-07;5!CL:0000875;5.96e-07;3!CL:0002396;5.96e-07;3!CL:0000990;9.29e-07;8!CL:0000766;9.58e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.54e-13,108;CL:0000049,1.54e-13,108;CL:0000453,1.28e-12,5;CL:0000839,2.84e-12,66;CL:0000557,7.17e-12,67;CL:0000473,8.77e-10,48;CL:0000234,8.77e-10,48;CL:0002009,9.54e-09,61;CL:0000766,1.97e-08,72;CL:0002393,5.47e-08,9;CL:0002397,5.47e-08,9;CL:0000037,1.18e-07,168;CL:0000860,1.54e-07,42;CL:0002057,1.54e-07,42;CL:0000451,2.42e-07,10;CL:0000097,2.67e-07,5;CL:0002028,2.67e-07,5;CL:0002032,4.73e-07,161;CL:0000837,4.73e-07,161;CL:0002194,5.34e-07,59;CL:0000576,5.34e-07,59;CL:0000040,5.34e-07,59;CL:0000559,5.34e-07,59;CL:0000875,5.64e-07,3;CL:0002396,5.64e-07,3;CL:0000988,7.49e-07,177;CL:0000990,8.99e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.45e-19!80;UBERON:0001474!1.19e-16!86;UBERON:0004765!4.28e-15!101;UBERON:0001434!4.28e-15!101;UBERON:0001737!1.50e-14!9;UBERON:0002390!3.98e-12!102;UBERON:0003061!3.98e-12!102;UBERON:0002193!1.38e-11!112;UBERON:0002405!5.69e-11!115;UBERON:0002204!1.47e-08!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.69e-22;9!UBERON:0001557;4.69e-22;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.95e-22,9;UBERON:0002371,4.72e-12,76;UBERON:0004765,3.70e-11,90;UBERON:0001474,1.05e-10,82;UBERON:0002405,1.43e-10,93;UBERON:0001434,2.28e-09,100;UBERON:0001557,2.55e-09,19;UBERON:0002193,3.47e-08,108;UBERON:0002390,5.85e-08,98;UBERON:0003061,5.85e-08,98;UBERON:0002204,3.54e-07,167 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01697543935533,1.20538905604795,1.46062018077475,1.95173119516203,0,0,0,0,0,0,0,0,0,0.786728553697808,0.383829398097213,0.464448369948228,0,0,0,0,0,2.34880351467878,0,0,0,0,0,0,0.726991193897824,1.13362783106643,0.727752183563449,0.464858073811369,0,1.23882548358041,0,1.0246428261164,0.945928919554341,1.03423704220986,0.645484683583826,2.70852973188684,1.12945403725563,0.545812300115692,0.449446968890169,0.306083892370903,0,0,0.329851300186716,0.398927315243264,0.852449501065388,0.290209238628584,0,0.622822248995575,0.502497330513487,1.5644487552606,0.868755378820466,0.605399502633369,1.47311054395026,0,1.69004229049553,1.06302149982522,1.67726916406701,0.673971786878971,1.05123824989054,0.964353520182481,1.42506371870624,1.79025009479181,1.0959849225878,0,0,0.889509253863555,1.28019066769952,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0,0,0,0,2.10707267820062,0,0,0,1.33749196312542,0.651844533267181,0,0,2.45103005147382,0.589211814949674,2.21533894583621,0.541607727530031,0.896639238079726,0.910415432919148,0.493313713811028,0.552700035571697,0.869409257205157,0.741432815810302,0.535081656179426,1.04535523804977,1.35971211237079,0,0.68725489096526,1.26509846009751,0.318565414324097,0,0,0.301150238155546,0.383959833463255,0,0.236777252044017,0,0,0,0,0,0,1.2786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14398982156026,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.662045904066094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.675105328965065,0,0,0,1.2931684545505,0,0,0,0,0,0,0.121973706129595,0,0,0,4.54177531576131,6.56959246336494,0,0,0,0,0,3.54920400119532,4.04603256187444,4.33819853790268,3.19852520923942,4.13970943775572,3.08451804844426,4.71909578560575,4.31687223275761,3.46272441251751,0,0,0,0,0,0,0,0,0,1.88724591328378,0,0,0,0,0,0,0,1.73895607462615,2.11335649624479,0,2.77791307545966,1.14152491340759,0,0,0,0,0,0.93733833986777,1.84780341018745,1.41775097242386,0,0,0,0,1.84901711427775,1.65862492432618,1.29707958075265,1.64115163454294,1.20645999155121,0,0,0,0,1.50171528921959,1.71495859578347,0,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,1.74306691720059,0,3.64871341923571,2.00902836572851,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27587750330633,0,0,0,0,0,0,1.24782516918484,0.535286966391485,1.73472656537328,0.468565659970853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61384789315225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.77039506583738,8.62736988382172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14729081763241,1.17898849215745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766021480529467,0,5.19395104439289,0,0,0,7.51903431270201,3.72441911163527,0,0,0,0,0,0,0,0,0,0,1.89318974933188,0,0,0,0,0,0,0,0.95497793895076,1.78178808499583,0,0.994147647766298,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05163472634166,0,0,0,0,0,0,0,0,0,0,0.638002319463839,1.4655614944298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.01882871162548,2.61324929534744,3.32352270423348,2.69968669861801,3.0952078182318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.904980694530854,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0,0,0,0,0.886068179966986,1.34228891392159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77962244319307,0,0,0,0,0,0.899606224327209,0,0.829412415681711,0,3.65221543268214,0,1.52322084867518,0,0,0,1.39210127963548,1.59238355479446,0,0,1.01024846629776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.92290463259083,4.25167489002762,3.10774249086104,0,0,0,0,0,0,0,0,0.699397538597222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93061915699296,0,0,0,0,1.29485767437579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785233868459781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65833887891756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@RNF5 | |||
}} |
Latest revision as of 01:59, 18 September 2015
Short description: | p2@RNF5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RNF5_5end |
Coexpression cluster: | C600_Reticulocytes_CD34_HES3GFP_Hep2_Mesenchymal_iPS_CD4 |
Association with transcript: | 0bp_to_ENST00000427134_5end |
EntrezGene: | RNF5 |
HGNC: | 10068 |
UniProt: | E7EM95 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.54e-13 | 108 |
common myeloid progenitor | 1.54e-13 | 108 |
Langerhans cell | 1.28e-12 | 5 |
myeloid lineage restricted progenitor cell | 2.84e-12 | 66 |
granulocyte monocyte progenitor cell | 7.17e-12 | 67 |
defensive cell | 8.77e-10 | 48 |
phagocyte | 8.77e-10 | 48 |
macrophage dendritic cell progenitor | 9.54e-09 | 61 |
myeloid leukocyte | 1.97e-08 | 72 |
intermediate monocyte | 5.47e-08 | 9 |
CD14-positive, CD16-positive monocyte | 5.47e-08 | 9 |
hematopoietic stem cell | 1.18e-07 | 168 |
classical monocyte | 1.54e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.54e-07 | 42 |
dendritic cell | 2.42e-07 | 10 |
mast cell | 2.67e-07 | 5 |
basophil mast progenitor cell | 2.67e-07 | 5 |
hematopoietic oligopotent progenitor cell | 4.73e-07 | 161 |
hematopoietic multipotent progenitor cell | 4.73e-07 | 161 |
monopoietic cell | 5.34e-07 | 59 |
monocyte | 5.34e-07 | 59 |
monoblast | 5.34e-07 | 59 |
promonocyte | 5.34e-07 | 59 |
non-classical monocyte | 5.64e-07 | 3 |
CD14-low, CD16-positive monocyte | 5.64e-07 | 3 |
hematopoietic cell | 7.49e-07 | 177 |
conventional dendritic cell | 8.99e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.95e-22 | 9 |
bone marrow | 4.72e-12 | 76 |
skeletal element | 3.70e-11 | 90 |
bone element | 1.05e-10 | 82 |
immune system | 1.43e-10 | 93 |
skeletal system | 2.28e-09 | 100 |
upper respiratory tract | 2.55e-09 | 19 |
hemolymphoid system | 3.47e-08 | 108 |
hematopoietic system | 5.85e-08 | 98 |
blood island | 5.85e-08 | 98 |
musculoskeletal system | 3.54e-07 | 167 |