FFCP PHASE1:Hg19::chr6:32410996..32411064,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:32410996..32411064,+
|short_description=p4@HLA-DQA1
|description=CAGE_peak_4_at_HLA-DQA1_5end
|association_with_transcript=35bp_to_AF522250_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3117 | |EntrezGene=3117 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=4942 | |HGNC=4942 | ||
|TSSclassifier=strong | |||
|UniProt=Q7YPT8 | |UniProt=Q7YPT8 | ||
|association_with_transcript=35bp_to_AF522250_5end | |||
|cluster_id=chr6:32410996..32411064,+ | |||
|coexpression_cluster_id=C187 | |||
|description=CAGE_peak_4_at_HLA-DQA1_5end | |||
|id=chr6:32410996..32411064,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.40e-59!140;CL:0002087!1.11e-55!119;CL:0000037!1.78e-51!172;CL:0000566!1.78e-51!172;CL:0002031!1.17e-49!124;CL:0000988!2.27e-48!182;CL:0002032!9.85e-48!165;CL:0000837!9.85e-48!165;CL:0002009!2.99e-46!65;CL:0002194!5.20e-44!63;CL:0000576!5.20e-44!63;CL:0000040!5.20e-44!63;CL:0000559!5.20e-44!63;CL:0002057!1.63e-40!42;CL:0000557!2.92e-40!71;CL:0000766!1.63e-39!76;CL:0000839!3.00e-37!70;CL:0000860!1.52e-36!45;CL:0000763!3.94e-34!112;CL:0000049!3.94e-34!112;CL:0000945!1.58e-17!24;CL:0000826!1.58e-17!24;CL:0000236!2.61e-13!14;CL:0000451!3.00e-12!10;CL:0000542!7.24e-12!53;CL:0000051!7.24e-12!53;CL:0000838!2.34e-11!52;CL:0000990!6.50e-11!8;CL:0002393!9.19e-09!9;CL:0002397!9.19e-09!9;CL:0000134!1.27e-08!358;CL:0002320!6.95e-08!365;CL:0000840!9.83e-08!5;CL:0001029!9.83e-08!5;CL:0000453!5.54e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000473;5.47e-44;39!CL:0000234;5.47e-44;39!CL:0000860;5.57e-44;33!CL:0002057;5.57e-44;33!CL:0000576;1.78e-37;48!CL:0000766;5.28e-25;69!CL:0002087;2.37e-20;104!CL:0000945;5.94e-20;24!CL:0000738;4.74e-19;136!CL:0000451;3.11e-17;10!CL:0000236;6.22e-16;13!CL:0000990;2.34e-15;8!CL:0000763;4.98e-12;100!CL:0000840;1.16e-10;5!CL:0000988;1.64e-10;177!CL:0000235;2.74e-10;6!CL:0000453;1.36e-09;5!CL:0002393;7.47e-09;6!CL:0002397;7.47e-09;6!CL:0000219;6.48e-08;193!CL:0000542;9.13e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.82e-80,136;CL:0002087,3.99e-76,115;CL:0002009,2.94e-74,61;CL:0002194,7.84e-71,59;CL:0000576,7.84e-71,59;CL:0000040,7.84e-71,59;CL:0000559,7.84e-71,59;CL:0002031,5.88e-69,120;CL:0000473,1.10e-68,48;CL:0000234,1.10e-68,48;CL:0000557,6.93e-66,67;CL:0000037,2.71e-64,168;CL:0000839,2.36e-61,66;CL:0000766,5.76e-61,72;CL:0000988,6.08e-61,177;CL:0002032,3.45e-60,161;CL:0000837,3.45e-60,161;CL:0000860,1.76e-59,42;CL:0002057,1.76e-59,42;CL:0000763,4.91e-48,108;CL:0000049,4.91e-48,108;CL:0000945,5.05e-20,24;CL:0000826,5.05e-20,24;CL:0000134,1.29e-17,354;CL:0000451,2.09e-17,10;CL:0000236,6.09e-17,14;CL:0002320,9.48e-17,361;CL:0000990,2.01e-15,8;CL:0000219,9.81e-14,386;CL:0002393,3.08e-12,9;CL:0002397,3.08e-12,9;CL:0000542,3.90e-11,53;CL:0000051,3.90e-11,53;CL:0000840,1.02e-10,5;CL:0001029,1.02e-10,5;CL:0000838,1.71e-10,52;CL:0000034,2.00e-10,441;CL:0000235,2.80e-10,6;CL:0000048,3.76e-10,427;CL:0000723,1.14e-09,433;CL:0000453,1.31e-09,5 | |||
|ontology_enrichment_development_v019=CL:0002057;9.68e-43;42!CL:0000049;1.09e-13;108!CL:0000051;9.13e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.63e-43!102;UBERON:0003061!2.63e-43!102;UBERON:0002193!2.34e-39!112;UBERON:0002371!2.75e-34!80;UBERON:0001474!3.17e-30!86;UBERON:0002405!6.26e-26!115;UBERON:0004765!4.26e-23!101;UBERON:0001434!4.26e-23!101;UBERON:0007023!4.11e-20!115;UBERON:0003081!4.01e-13!216;UBERON:0002204!4.00e-09!167;UBERON:0000178!6.64e-08!15;UBERON:0000179!6.64e-08!15;UBERON:0000463!6.64e-08!15;UBERON:0002384!3.01e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.66e-10;15!UBERON:0000179;4.66e-10;15!UBERON:0000463;4.66e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.70e-65,98;UBERON:0003061,4.70e-65,98;UBERON:0002193,1.52e-60,108;UBERON:0002371,8.43e-56,76;UBERON:0002405,1.45e-50,93;UBERON:0001474,2.62e-50,82;UBERON:0004765,3.93e-44,90;UBERON:0001434,8.13e-38,100;UBERON:0003081,5.26e-25,203;UBERON:0002204,5.50e-17,167;UBERON:0002384,3.68e-16,371;UBERON:0000926,1.85e-10,315;UBERON:0004120,1.85e-10,315;UBERON:0006603,1.85e-10,315;UBERON:0000178,5.40e-10,15;UBERON:0000179,5.40e-10,15;UBERON:0000463,5.40e-10,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0.125542639594803,2.13957536094264,1.9704141467987,1.8890587515283,0.786728553697808,1.53531759238885,2.16742572642506,0,0,0,0.619737604642413,0.568676929949686,0.880801318004542,1.10799081706375,4.21143339687298,4.12320654360118,5.82180233023803,8.09734165047449,6.95454032612304,9.30548728189214,13.9814099164859,10.6736986922639,10.2268776238501,13.5685403047203,8.3620720141678,8.63077176966451,19.9805351092698,6.85798466676897,6.89491361473237,9.03678557017357,8.12558919566051,11.6710250516415,18.5576182039335,14.3823030044854,11.9372718024652,9.9487998393589,13.4260796417799,8.90598510504134,16.1565562673522,11.9342930149154,13.3496249769149,18.7237124148076,15.5705562248894,9.54744927975624,14.6015217157656,8.90474263290978,10.2917915447673,11.4166067156145,11.7091083353127,7.18267973460602,10.6302149982522,9.43463904787692,3.25753030324836,5.10601435661121,2.4108838004562,4.56020389985998,4.17725022118089,4.20127553658658,7.03984977845291,8.7382177801941,8.00558328477199,11.0949857867292,14.0138595462604,13.2193061189531,10.5767179645578,7.63243003628291,9.10740750575117,8.22132065119314,5.3518251937532,3.96513985737078,2.80254281490768,1.31692042387539,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0.589211814949674,0.886135578334485,0,0.128091319725675,0.390178042679635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0.255973222308837,1.24930726552346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,1.0478326039817,0,0,20.1219384065904,19.3284008402187,22.7358112487259,2.8618874916641,3.43196946468077,1.85728750664782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,8.8638122191463,5.14809383306323,10.1069190356335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.8922805154143,12.5564272858032,44.2751272914366,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6541442089831,2.37285620900479,2.881644060693,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13345112812495,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0,0,0,1.41215701165169,0,0,0,0,2.02979043692868,2.29391162142713,1.70894156152249,1.19115887728894,1.23408681925858,0,1.08006287447623,3.96562588147135,0,0,0,1.48642540100575,0.432807638929335,0,0,0.199579371432817,2.48956981172077,0,0,1.96558024679421,0.912938716132769,0,0,0.338583555603207,0,3.02699560786571,0.425846237690326,0.343505344755765,0,0.223676107892416,0,0.390776190804081,0,0,0,0,0,0,1.61158997199083,0,1.33732061132974,0,0.47748896947538,0,0,0,0.140669416410513,0,1.15362711958732,0,0.996239941255349,3.31540698637377,0,0,1.23084805461069,0,0,0,0,0.493217028184668,7.18449277040819,0,0,0.649376687132959,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.219385397153973,0,0,0.461701551022782,0,0,0,0,0,0.0915975934018623,3.19820865611181,0,0,0,0,0,0,0,0,0,0,0,0,0,2.56526937059684,0.611030144933625,0,1.23563938946503,0.313265848516366,0.337005664903385,0,0.702793337176017,2.00700268137233,0.19566461893209,0,1.18375320854817,2.41981432097328,0,1.5796644907122,0,0,0,0,0,0,0,0,0,0,0,2.79562669187248,0,0,0,0,1.35784623083787,0,0.451961481561065,0,0,0,0,0,0.640358984218058,0.19980960958213,0,0,0,0.432164393964449,0,0,0,0,0,0,0,0.547621515567972,0,0,1.8402114799552,1.11712960508902,0.229160424011684,0,0,0,1.33902874465124,0.134366944973453,0,0,0,0,0,0,1.86281330544726,0,0.136203406111576,0,0,0,20.697598022738,33.2734840459918,0.0607495566580247,0,2.04894838977915,0.209818352539992,0,0,0,2.85878130549347,1.32418394073086,0,0,0,0,0,0,0,0,0.732761168390412,0,0.387848869084652,0.66116300871345,0,0,4.69864615297857,0.471612915298998,10.3559763836799,4.46549419630756,0.395223263795889,2.07047417247523,0,0,0,0.612691153526923,0,0,0,0,0.1251909307065,0,0.554645257684261,0.372578417648301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,23.7729576784054,16.7409698794837,14.8844508772818,0,0,0,4.39972270880846,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0.192687675289379,0,0,0,0,0,0.161475645631851,1.42769420259154,0,0,0,0,0,0,0,0.451261970095544,0,0.781514011233092,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0.496211178389294,0,0.255524855279191,1.07140367175657,0.672567444437648,0,0,0.177404740325278,3.91795557689649,0,0,0.131545547125698,0,0,0.470958557103084,0.157115589916002,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,2.11693525095465,0,0,0,0,0.098150233615243,0,0.647428837187895,1.02662806856247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| ||
|short_description=p4@HLA-DQA1 | |||
}} | }} |
Latest revision as of 02:55, 18 September 2015
Short description: | p4@HLA-DQA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HLA-DQA1_5end |
Coexpression cluster: | C187_migratory_immature_Dendritic_CD19_CD14_Monocytederived_Macrophage |
Association with transcript: | 35bp_to_AF522250_5end |
EntrezGene: | HLA-DQA1 |
HGNC: | 4942 |
UniProt: | Q7YPT8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.70e-65 | 98 |
blood island | 4.70e-65 | 98 |
hemolymphoid system | 1.52e-60 | 108 |
bone marrow | 8.43e-56 | 76 |
immune system | 1.45e-50 | 93 |
bone element | 2.62e-50 | 82 |
skeletal element | 3.93e-44 | 90 |
skeletal system | 8.13e-38 | 100 |
lateral plate mesoderm | 5.26e-25 | 203 |
musculoskeletal system | 5.50e-17 | 167 |
connective tissue | 3.68e-16 | 371 |
mesoderm | 1.85e-10 | 315 |
mesoderm-derived structure | 1.85e-10 | 315 |
presumptive mesoderm | 1.85e-10 | 315 |
blood | 5.40e-10 | 15 |
haemolymphatic fluid | 5.40e-10 | 15 |
organism substance | 5.40e-10 | 15 |