FFCP PHASE1:Hg19::chr6:32908739..32908746,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:32908739..32908746,-
|short_description=p3@HLA-DMB
|description=CAGE_peak_3_at_HLA-DMB_5end
|association_with_transcript=14bp_to_ENST00000498020_5end
|Ent...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3109 | |EntrezGene=3109 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4935 | |HGNC=4935 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=14bp_to_ENST00000498020_5end | |||
|cluster_id=chr6:32908739..32908746,- | |||
|coexpression_cluster_id=C691 | |||
|description=CAGE_peak_3_at_HLA-DMB_5end | |||
|id=chr6:32908739..32908746,- | |||
|ontology_enrichment_celltype=CL:0000738!5.88e-64!140;CL:0002087!3.58e-63!119;CL:0002031!1.75e-56!124;CL:0000037!1.94e-50!172;CL:0000566!1.94e-50!172;CL:0000988!1.54e-47!182;CL:0002009!4.56e-47!65;CL:0002032!6.18e-46!165;CL:0000837!6.18e-46!165;CL:0002194!1.01e-44!63;CL:0000576!1.01e-44!63;CL:0000040!1.01e-44!63;CL:0000559!1.01e-44!63;CL:0000557!6.80e-43!71;CL:0002057!6.50e-41!42;CL:0000839!4.54e-38!70;CL:0000766!5.09e-38!76;CL:0000860!5.17e-37!45;CL:0000763!1.05e-27!112;CL:0000049!1.05e-27!112;CL:0000945!1.55e-18!24;CL:0000826!1.55e-18!24;CL:0000542!3.26e-16!53;CL:0000051!3.26e-16!53;CL:0000838!1.28e-15!52;CL:0000236!5.60e-14!14;CL:0000451!1.06e-11!10;CL:0000990!7.75e-10!8;CL:0000134!1.86e-09!358;CL:0002393!8.72e-09!9;CL:0002397!8.72e-09!9;CL:0002320!1.00e-08!365;CL:0000840!5.37e-08!5;CL:0001029!5.37e-08!5;CL:0000219!8.28e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.00e-55;39!CL:0000234;1.00e-55;39!CL:0000860;1.14e-54;33!CL:0002057;1.14e-54;33!CL:0000576;3.89e-45;48!CL:0000766;8.80e-31;69!CL:0000236;2.25e-20;13!CL:0002087;9.58e-19;104!CL:0000738;3.47e-18;136!CL:0000945;2.52e-15;24!CL:0000451;1.89e-14;10!CL:0000763;2.31e-14;100!CL:0000235;1.16e-13;6!CL:0000840;2.76e-13;5!CL:0002393;1.86e-11;6!CL:0002397;1.86e-11;6!CL:0000990;4.18e-11;8!CL:0000988;1.53e-10;177!CL:0002619;4.10e-08;3!CL:0000219;1.48e-07;193!CL:0000784;7.51e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,1.20e-90,61;CL:0002194,3.22e-86,59;CL:0000576,3.22e-86,59;CL:0000040,3.22e-86,59;CL:0000559,3.22e-86,59;CL:0000557,3.70e-84,67;CL:0000473,1.18e-80,48;CL:0000234,1.18e-80,48;CL:0000839,1.66e-75,66;CL:0000738,5.73e-75,136;CL:0002087,7.45e-74,115;CL:0000766,7.68e-74,72;CL:0002031,1.79e-68,120;CL:0000860,4.18e-68,42;CL:0002057,4.18e-68,42;CL:0000037,3.41e-60,168;CL:0000988,4.41e-56,177;CL:0002032,7.77e-53,161;CL:0000837,7.77e-53,161;CL:0000763,4.12e-52,108;CL:0000049,4.12e-52,108;CL:0000236,9.31e-22,14;CL:0000134,2.19e-19,354;CL:0002320,1.31e-18,361;CL:0000219,6.87e-16,386;CL:0000945,2.30e-15,24;CL:0000826,2.30e-15,24;CL:0000451,1.83e-14,10;CL:0000235,1.31e-13,6;CL:0000840,2.29e-13,5;CL:0001029,2.29e-13,5;CL:0000048,1.36e-12,427;CL:0000034,3.64e-12,441;CL:0000723,3.86e-12,433;CL:0000990,3.67e-11,8;CL:0002393,7.95e-10,9;CL:0002397,7.95e-10,9;CL:0002619,4.11e-08,3;CL:0000784,7.75e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;2.03e-49;42!CL:0000049;9.56e-15;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.01e-47!102;UBERON:0003061!8.01e-47!102;UBERON:0002193!5.06e-43!112;UBERON:0002371!5.29e-37!80;UBERON:0001474!7.88e-33!86;UBERON:0002405!8.69e-28!115;UBERON:0004765!1.05e-25!101;UBERON:0001434!1.05e-25!101;UBERON:0007023!5.36e-20!115;UBERON:0003081!3.49e-12!216;UBERON:0002204!2.98e-09!167;UBERON:0000178!2.07e-08!15;UBERON:0000179!2.07e-08!15;UBERON:0000463!2.07e-08!15;UBERON:0002384!4.38e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.69e-75,76;UBERON:0002390,7.47e-73,98;UBERON:0003061,7.47e-73,98;UBERON:0002193,4.62e-69,108;UBERON:0001474,2.59e-68,82;UBERON:0002405,1.34e-67,93;UBERON:0004765,8.31e-61,90;UBERON:0001434,4.18e-53,100;UBERON:0003081,5.49e-27,203;UBERON:0002204,1.95e-26,167;UBERON:0002384,1.49e-17,371;UBERON:0000926,2.88e-13,315;UBERON:0004120,2.88e-13,315;UBERON:0006603,2.88e-13,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0.136874425072884,0,0.764134057479513,0.903106483949403,0.708397031823113,3.14691421479123,0.383829398097213,3.40595471295367,0,0,0,0.852139206383318,0.284338464974843,1.17440175733939,2.21598163412751,2.4065333696417,3.90619567288533,13.2110129801555,24.2920249514235,22.15149881654,4.07115068582781,4.1566353805769,2.66842467306598,3.25400651667958,3.28934310417461,2.47765096716083,2.8769239232215,6.14785695669842,7.33094912654614,4.13694816883942,5.80936215225443,2.70852973188684,3.38836211176688,5.73102915121476,4.71919317334678,5.81559395504715,3.85114832491312,6.39337125799041,3.29851300186716,5.78444607102732,2.55734850319616,6.09439401120026,3.40431134814684,2.4912889959823,4.27122730936464,4.17186334736161,3.47502151528187,1.21079900526674,5.15588690382591,4.43047342417238,3.16882929467913,1.70083439972035,4.82214884669265,2.92054440980887,3.30389164251314,1.12507910687956,0.570025487482497,0.39783335439818,1.64397738388171,14.0796995569058,19.1148513941746,8.00558328477199,17.4959391252268,16.0158394814405,16.66782075868,19.8313461835459,19.0810750907073,6.83055562931338,15.8554041130153,9.93910393125595,0,0.560508562981536,2.63384084775077,0,0,0.411202997999018,0,0.32592226663359,0,0,0,0,0,0,0,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0.637130828648193,0,0,0.602300476311091,0.255973222308837,0,0.710331756132051,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.654895377488563,0,0,4.86821090482025,4.17911369518241,8.50930947320737,3.57735936458013,2.28797964312051,5.57186251994347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.5721992861077,3.04205544681009,7.72882043901387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.8110914833548,10.0451418286425,16.8667151586425,0,0,0,0,0,0,0.112085143993527,0.394061520403854,0.215627574859517,0.641715181398742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44737618286021,3.01999881146064,1.70764092485511,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0.507447609232169,0,1.70894156152249,0.714695326373367,0.411362273086194,0.648473311192717,0.540031437238115,3.17250070517708,0,0,0,0.743212700502875,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0.439524537815682,0,0.445773537109913,0,0,0,0,0,0.422008249231538,0,0,0,0.996239941255349,0.828851746593443,0,0,0.123084805461069,0,0,0,0,0.197286811273867,2.3948309234694,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0.658156191461918,0,0,0.538651809526579,0,0,0,0,0.31900115973192,0.274792780205587,1.5991043280559,0,0,0,0,0,0,0,0,0,0.816164040795739,0,0,2.98578579323551,0.353830258013357,1.22206028986725,0,0.247127877893006,0.313265848516366,0.943615861729479,0,0,0.729819156862664,0,0,0,1.20990716048664,0,2.27471686662557,0,0,0,0,0,0,4.83836228250648,0,0,0,0,0.873633341210151,0,0,0,0,0.193978032976839,0,0,0,0,0.189932387867636,0,0,0,0,0.288180834308212,0,0,0.14405479798815,0,0,0,0,0,0,0,1.36905378891993,1.27746588066972,0,0.262887354279314,0.279282401272254,0,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0.677386656526276,0,0.408610218334727,0,0,0,11.0237206860235,21.6664547276226,0.242998226632099,0,0,0.209818352539992,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0.146552233678082,1.32506888912221,0,0.66116300871345,0.171086837884329,0,0.747511887973863,0,3.72815149812476,2.48083010905975,0,4.26274094333136,0,0,0.2506898940227,0,0,0,0,0,0.3755727921195,0,0.665574309221114,0.807253238237985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.389720617678777,0.930053882193542,1.30852315404675,0,0,0,0.999936979274649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.957803154342908,0.205116364240755,0,0.207471757392654,0.645902582527404,0,0,0,0,0,0,0,0,0.676892955143315,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.253663240775627,0,0.548257766857182,0,0,0.127762427639595,0.535701835878287,0.336283722218824,0,0.227662191351298,0.266107110487916,1.26757386311357,0,0.271878931907327,0,0,0,0.39246546425257,0.157115589916002,0,0,0,0,0.643288897589907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0.205325613712494,0,0,0,0,0,0,0,0,1.00326405540328,0.218559560503957,0,0,0,0.196308467114945,2.0793248022896,0,0,1.12780701575824,1.54698931136585,0,0,0,0,0.730336388246517,1.37618785021362,1.29005624836306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.827463966895162,0.639701945702943,0.23806443146374,0.645889098360061,0.806971285846153,0,0.318235791390825,0,0.217716747896961,0,2.55937801455433,0.143444410785353,0,0,0,0,1.43720323370539,0,0.366724332548599,0,0,1.00636896795513,1.9234109538194 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0.136874425072884,0,0.764134057479513,0.903106483949403,0.708397031823113,3.14691421479123,0.383829398097213,3.40595471295367,0,0,0,0.852139206383318,0.284338464974843,1.17440175733939,2.21598163412751,2.4065333696417,3.90619567288533,13.2110129801555,24.2920249514235,22.15149881654,4.07115068582781,4.1566353805769,2.66842467306598,3.25400651667958,3.28934310417461,2.47765096716083,2.8769239232215,6.14785695669842,7.33094912654614,4.13694816883942,5.80936215225443,2.70852973188684,3.38836211176688,5.73102915121476,4.71919317334678,5.81559395504715,3.85114832491312,6.39337125799041,3.29851300186716,5.78444607102732,2.55734850319616,6.09439401120026,3.40431134814684,2.4912889959823,4.27122730936464,4.17186334736161,3.47502151528187,1.21079900526674,5.15588690382591,4.43047342417238,3.16882929467913,1.70083439972035,4.82214884669265,2.92054440980887,3.30389164251314,1.12507910687956,0.570025487482497,0.39783335439818,1.64397738388171,14.0796995569058,19.1148513941746,8.00558328477199,17.4959391252268,16.0158394814405,16.66782075868,19.8313461835459,19.0810750907073,6.83055562931338,15.8554041130153,9.93910393125595,0,0.560508562981536,2.63384084775077,0,0,0.411202997999018,0,0.32592226663359,0,0,0,0,0,0,0,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0.637130828648193,0,0,0.602300476311091,0.255973222308837,0,0.710331756132051,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.654895377488563,0,0,4.86821090482025,4.17911369518241,8.50930947320737,3.57735936458013,2.28797964312051,5.57186251994347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.5721992861077,3.04205544681009,7.72882043901387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.8110914833548,10.0451418286425,16.8667151586425,0,0,0,0,0,0,0.112085143993527,0.394061520403854,0.215627574859517,0.641715181398742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44737618286021,3.01999881146064,1.70764092485511,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0.507447609232169,0,1.70894156152249,0.714695326373367,0.411362273086194,0.648473311192717,0.540031437238115,3.17250070517708,0,0,0,0.743212700502875,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0.439524537815682,0,0.445773537109913,0,0,0,0,0,0.422008249231538,0,0,0,0.996239941255349,0.828851746593443,0,0,0.123084805461069,0,0,0,0,0.197286811273867,2.3948309234694,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0.658156191461918,0,0,0.538651809526579,0,0,0,0,0.31900115973192,0.274792780205587,1.5991043280559,0,0,0,0,0,0,0,0,0,0.816164040795739,0,0,2.98578579323551,0.353830258013357,1.22206028986725,0,0.247127877893006,0.313265848516366,0.943615861729479,0,0,0.729819156862664,0,0,0,1.20990716048664,0,2.27471686662557,0,0,0,0,0,0,4.83836228250648,0,0,0,0,0.873633341210151,0,0,0,0,0.193978032976839,0,0,0,0,0.189932387867636,0,0,0,0,0.288180834308212,0,0,0.14405479798815,0,0,0,0,0,0,0,1.36905378891993,1.27746588066972,0,0.262887354279314,0.279282401272254,0,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0.677386656526276,0,0.408610218334727,0,0,0,11.0237206860235,21.6664547276226,0.242998226632099,0,0,0.209818352539992,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0.146552233678082,1.32506888912221,0,0.66116300871345,0.171086837884329,0,0.747511887973863,0,3.72815149812476,2.48083010905975,0,4.26274094333136,0,0,0.2506898940227,0,0,0,0,0,0.3755727921195,0,0.665574309221114,0.807253238237985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.389720617678777,0.930053882193542,1.30852315404675,0,0,0,0.999936979274649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.957803154342908,0.205116364240755,0,0.207471757392654,0.645902582527404,0,0,0,0,0,0,0,0,0.676892955143315,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.253663240775627,0,0.548257766857182,0,0,0.127762427639595,0.535701835878287,0.336283722218824,0,0.227662191351298,0.266107110487916,1.26757386311357,0,0.271878931907327,0,0,0,0.39246546425257,0.157115589916002,0,0,0,0,0.643288897589907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0.205325613712494,0,0,0,0,0,0,0,0,1.00326405540328,0.218559560503957,0,0,0,0.196308467114945,2.0793248022896,0,0,1.12780701575824,1.54698931136585,0,0,0,0,0.730336388246517,1.37618785021362,1.29005624836306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.827463966895162,0.639701945702943,0.23806443146374,0.645889098360061,0.806971285846153,0,0.318235791390825,0,0.217716747896961,0,2.55937801455433,0.143444410785353,0,0,0,0,1.43720323370539,0,0.366724332548599,0,0,1.00636896795513,1.9234109538194 | ||
|short_description=p3@HLA-DMB | |||
}} | }} |
Latest revision as of 04:29, 18 September 2015
Short description: | p3@HLA-DMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HLA-DMB_5end |
Coexpression cluster: | C691_Monocytederived_CD14_Macrophage_CD19_Dendritic_immature_Whole |
Association with transcript: | 14bp_to_ENST00000498020_5end |
EntrezGene: | HLA-DMB |
HGNC: | 4935 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.69e-75 | 76 |
hematopoietic system | 7.47e-73 | 98 |
blood island | 7.47e-73 | 98 |
hemolymphoid system | 4.62e-69 | 108 |
bone element | 2.59e-68 | 82 |
immune system | 1.34e-67 | 93 |
skeletal element | 8.31e-61 | 90 |
skeletal system | 4.18e-53 | 100 |
lateral plate mesoderm | 5.49e-27 | 203 |
musculoskeletal system | 1.95e-26 | 167 |
connective tissue | 1.49e-17 | 371 |
mesoderm | 2.88e-13 | 315 |
mesoderm-derived structure | 2.88e-13 | 315 |
presumptive mesoderm | 2.88e-13 | 315 |