FFCP PHASE1:Hg19::chr6:33266492..33266522,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:33266492..33266522,- to FFCP PHASE1:Hg19::chr6:33266492..33266522,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5863 | |EntrezGene=5863 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9769 | |HGNC=9769 | ||
|TSSclassifier=strong | |||
|UniProt=A2AB89 | |UniProt=A2AB89 | ||
|association_with_transcript=64bp_to_ENST00000425946_5end | |||
|cluster_id=chr6:33266492..33266522,- | |||
|description=CAGE_peak_3_at_RGL2_5end | |||
|id=chr6:33266492..33266522,- | |||
|ontology_enrichment_celltype=CL:0000220!6.35e-09!246;CL:0002321!1.18e-08!248;CL:0000055!2.46e-07!180;CL:1000449!3.15e-07!16;CL:1000497!7.34e-07!18;CL:0002518!7.34e-07!18;CL:1000507!7.68e-07!12;CL:1000494!7.68e-07!12 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.02e-08,250;CL:1000449,6.36e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!4.67e-16!312;UBERON:0000475!6.70e-16!365;UBERON:0000483!1.10e-15!309;UBERON:0000025!1.67e-11!194;UBERON:0000481!6.89e-11!347;UBERON:0000477!3.89e-10!286;UBERON:0004111!1.19e-09!241;UBERON:0000468!1.10e-08!659;UBERON:0004876!2.82e-08!20;UBERON:0002100!4.09e-08!216;UBERON:0002346!4.75e-08!90;UBERON:0000080!5.63e-08!18;UBERON:0002120!5.63e-08!18;UBERON:0004875!5.63e-08!18;UBERON:0005721!5.63e-08!18;UBERON:0005754!5.63e-08!18;UBERON:0007297!5.63e-08!18;UBERON:0003075!9.34e-08!86;UBERON:0007284!9.34e-08!86;UBERON:0006555!1.41e-07!17;UBERON:0005103!1.41e-07!17;UBERON:0000083!1.41e-07!17;UBERON:0009201!1.41e-07!17;UBERON:0004819!1.41e-07!17;UBERON:0006553!1.41e-07!17;UBERON:0003074!1.41e-07!17;UBERON:0003060!1.41e-07!17;UBERON:0000924!1.61e-07!173;UBERON:0006601!1.61e-07!173;UBERON:0003887!1.73e-07!21;UBERON:0000058!2.18e-07!26;UBERON:0004211!3.15e-07!16;UBERON:0001285!3.15e-07!16;UBERON:0007684!3.15e-07!16;UBERON:0003220!3.15e-07!16;UBERON:0004208!3.15e-07!16;UBERON:0004121!3.16e-07!169;UBERON:0003914!6.66e-07!118;UBERON:0002050!6.85e-07!605;UBERON:0005423!6.85e-07!605;UBERON:0000922!7.13e-07!612;UBERON:0009773!7.68e-07!12;UBERON:0001231!7.68e-07!12;UBERON:0004810!7.68e-07!12;UBERON:0000923!8.80e-07!604;UBERON:0005291!8.80e-07!604;UBERON:0006598!8.80e-07!604;UBERON:0002532!8.80e-07!604 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.58e-15,309;UBERON:0000483,3.72e-15,306;UBERON:0000025,8.17e-12,192;UBERON:0004111,8.12e-10,240;UBERON:0002346,1.28e-08,86;UBERON:0003075,2.56e-08,82;UBERON:0007284,2.56e-08,82;UBERON:0010314,7.72e-08,132;UBERON:0004121,1.09e-07,171;UBERON:0000924,1.09e-07,171;UBERON:0006601,1.09e-07,171;UBERON:0002100,1.12e-07,199;UBERON:0003104,1.66e-07,160;UBERON:0009142,1.66e-07,160;UBERON:0010371,2.12e-07,104;UBERON:0006555,2.78e-07,16;UBERON:0004819,2.78e-07,16;UBERON:0004211,6.36e-07,15;UBERON:0009773,6.36e-07,15;UBERON:0001231,6.36e-07,15;UBERON:0001285,6.36e-07,15;UBERON:0007684,6.36e-07,15;UBERON:0004208,6.36e-07,15;UBERON:0003914,6.88e-07,117;UBERON:0000922,8.51e-07,592;UBERON:0002049,8.73e-07,78;UBERON:0007798,8.73e-07,78;UBERON:0005423,8.99e-07,581 | |||
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| ||
|short_description=p3@RGL2 | |||
}} | }} |
Latest revision as of 06:37, 18 September 2015
Short description: | p3@RGL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RGL2_5end |
Coexpression cluster: | NA |
Association with transcript: | 64bp_to_ENST00000425946_5end |
EntrezGene: | RGL2 |
HGNC: | 9769 |
UniProt: | A2AB89 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.02e-08 | 250 |
epithelial cell of nephron | 6.36e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.58e-15 | 309 |
epithelium | 3.72e-15 | 306 |
tube | 8.17e-12 | 192 |
anatomical conduit | 8.12e-10 | 240 |
neurectoderm | 1.28e-08 | 86 |
neural plate | 2.56e-08 | 82 |
presumptive neural plate | 2.56e-08 | 82 |
structure with developmental contribution from neural crest | 7.72e-08 | 132 |
ectoderm-derived structure | 1.09e-07 | 171 |
ectoderm | 1.09e-07 | 171 |
presumptive ectoderm | 1.09e-07 | 171 |
trunk | 1.12e-07 | 199 |
mesenchyme | 1.66e-07 | 160 |
entire embryonic mesenchyme | 1.66e-07 | 160 |
ecto-epithelium | 2.12e-07 | 104 |
excretory tube | 2.78e-07 | 16 |
kidney epithelium | 2.78e-07 | 16 |
nephron epithelium | 6.36e-07 | 15 |
renal tubule | 6.36e-07 | 15 |
nephron tubule | 6.36e-07 | 15 |
nephron | 6.36e-07 | 15 |
uriniferous tubule | 6.36e-07 | 15 |
nephrogenic mesenchyme | 6.36e-07 | 15 |
epithelial tube | 6.88e-07 | 117 |
embryo | 8.51e-07 | 592 |
vasculature | 8.73e-07 | 78 |
vascular system | 8.73e-07 | 78 |
developing anatomical structure | 8.99e-07 | 581 |