FFCP PHASE1:Hg19::chr3:50192833..50192874,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6405 | |EntrezGene=6405 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10728 | |HGNC=10728 | ||
|TSSclassifier=strong | |||
|UniProt=C9IYS6,Q13275 | |UniProt=C9IYS6,Q13275 | ||
|association_with_transcript=0bp_to_ENST00000426511,NM_004186,uc003cyj.2_5end | |association_with_transcript=0bp_to_ENST00000426511,NM_004186,uc003cyj.2_5end | ||
|cluster_id=chr3:50192833..50192874,+ | |||
|description=CAGE_peak_6_at_SEMA3F_5end | |description=CAGE_peak_6_at_SEMA3F_5end | ||
|id=chr3:50192833..50192874,+ | |id=chr3:50192833..50192874,+ | ||
|ontology_enrichment_celltype=CL:0000066!5.98e-31!254;CL:0000115!1.90e-16!35;CL:0002078!8.13e-16!44;CL:0002139!4.05e-15!24;CL:0000076!4.83e-15!62;CL:0002321!7.33e-13!248;CL:0000213!1.39e-12!57;CL:0000215!1.39e-12!57;CL:0000220!1.48e-12!246;CL:0000071!1.25e-11!18;CL:0002546!1.25e-11!18;CL:1000449!9.37e-09!16;CL:1000497!3.95e-08!18;CL:0002518!3.95e-08!18;CL:0002076!5.82e-08!43;CL:0002681!7.95e-07!13;CL:0002584!7.95e-07!13 | |ontology_enrichment_celltype=CL:0000066!5.98e-31!254;CL:0000115!1.90e-16!35;CL:0002078!8.13e-16!44;CL:0002139!4.05e-15!24;CL:0000076!4.83e-15!62;CL:0002321!7.33e-13!248;CL:0000213!1.39e-12!57;CL:0000215!1.39e-12!57;CL:0000220!1.48e-12!246;CL:0000071!1.25e-11!18;CL:0002546!1.25e-11!18;CL:1000449!9.37e-09!16;CL:1000497!3.95e-08!18;CL:0002518!3.95e-08!18;CL:0002076!5.82e-08!43;CL:0002681!7.95e-07!13;CL:0002584!7.95e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0000115;2.61e-17;36!CL:0002139;8.39e-13;24!CL:0000071;2.39e-12;18!CL:0000244;3.08e-12;4!CL:0000731;3.08e-12;4!CL:0002078;1.11e-11;45!CL:0002543;1.33e-10;6!CL:1000449;2.51e-10;15!CL:0002681;3.56e-10;12!CL:0002584;3.56e-10;12!CL:0002188;4.53e-09;5!CL:1000497;6.25e-09;17!CL:0002518;6.25e-09;17!CL:0002618;1.19e-08;3!CL:0002368;1.95e-08;13!CL:0002076;3.05e-08;42!CL:0000213;4.84e-08;58!CL:0000215;4.84e-08;58!CL:1000413;5.46e-07;9!CL:0000575;7.88e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.28e-23,253;CL:0000115,3.91e-21,36;CL:0002078,9.06e-20,45;CL:0002139,5.71e-13,24;CL:0000213,1.07e-12,58;CL:0000215,1.07e-12,58;CL:0000071,1.40e-12,18;CL:0002546,1.40e-12,18;CL:0000244,3.19e-12,4;CL:0000731,3.19e-12,4;CL:0000076,4.77e-11,63;CL:0002321,5.88e-11,250;CL:0002543,9.91e-11,6;CL:1000449,2.82e-10,15;CL:0002681,4.42e-10,12;CL:0002584,4.42e-10,12;CL:0002188,3.81e-09,5;CL:0002618,6.63e-09,3;CL:1000497,6.89e-09,17;CL:0002518,6.89e-09,17;CL:0002076,1.66e-08,42;CL:0002368,1.71e-08,13;CL:0000223,3.17e-07,58;CL:1000413,3.83e-07,9;CL:0000575,8.30e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002546;2.39e-12;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000483!1.63e-13!309;UBERON:0000119!2.80e-13!312;UBERON:0001986!1.25e-11!18;UBERON:0004638!1.25e-11!18;UBERON:0004852!1.25e-11!18;UBERON:0006554!2.17e-11!44;UBERON:0001008!7.14e-11!45;UBERON:0000487!1.43e-10!22;UBERON:0000467!5.46e-10!625;UBERON:0000468!5.61e-10!659;UBERON:0000480!7.27e-10!626;UBERON:0006914!1.27e-09!25;UBERON:0000477!2.10e-09!286;UBERON:0004119!5.45e-09!169;UBERON:0000925!5.45e-09!169;UBERON:0006595!5.45e-09!169;UBERON:0004211!9.37e-09!16;UBERON:0001285!9.37e-09!16;UBERON:0007684!9.37e-09!16;UBERON:0003220!9.37e-09!16;UBERON:0004208!9.37e-09!16;UBERON:0000922!9.61e-09!612;UBERON:0004111!1.04e-08!241;UBERON:0000080!1.72e-08!18;UBERON:0002120!1.72e-08!18;UBERON:0004875!1.72e-08!18;UBERON:0005721!1.72e-08!18;UBERON:0005754!1.72e-08!18;UBERON:0007297!1.72e-08!18;UBERON:0002113!1.97e-08!27;UBERON:0003918!1.97e-08!27;UBERON:0005095!1.97e-08!27;UBERON:0007687!1.97e-08!27;UBERON:0003887!2.67e-08!21;UBERON:0000058!3.65e-08!26;UBERON:0005177!5.16e-08!107;UBERON:0000489!5.73e-08!32;UBERON:0006555!6.33e-08!17;UBERON:0005103!6.33e-08!17;UBERON:0000083!6.33e-08!17;UBERON:0009201!6.33e-08!17;UBERON:0004819!6.33e-08!17;UBERON:0006553!6.33e-08!17;UBERON:0003074!6.33e-08!17;UBERON:0003060!6.33e-08!17;UBERON:0003103!6.96e-08!69;UBERON:0000353!1.24e-07!17;UBERON:0000923!1.80e-07!604;UBERON:0005291!1.80e-07!604;UBERON:0006598!1.80e-07!604;UBERON:0002532!1.80e-07!604;UBERON:0002050!2.30e-07!605;UBERON:0005423!2.30e-07!605;UBERON:0004876!4.40e-07!20;UBERON:0005157!4.95e-07!51;UBERON:0000481!5.25e-07!347;UBERON:0003914!6.38e-07!118;UBERON:0001225!7.95e-07!13;UBERON:0008987!7.95e-07!13;UBERON:0003064!8.39e-07!37 | |ontology_enrichment_uberon=UBERON:0000483!1.63e-13!309;UBERON:0000119!2.80e-13!312;UBERON:0001986!1.25e-11!18;UBERON:0004638!1.25e-11!18;UBERON:0004852!1.25e-11!18;UBERON:0006554!2.17e-11!44;UBERON:0001008!7.14e-11!45;UBERON:0000487!1.43e-10!22;UBERON:0000467!5.46e-10!625;UBERON:0000468!5.61e-10!659;UBERON:0000480!7.27e-10!626;UBERON:0006914!1.27e-09!25;UBERON:0000477!2.10e-09!286;UBERON:0004119!5.45e-09!169;UBERON:0000925!5.45e-09!169;UBERON:0006595!5.45e-09!169;UBERON:0004211!9.37e-09!16;UBERON:0001285!9.37e-09!16;UBERON:0007684!9.37e-09!16;UBERON:0003220!9.37e-09!16;UBERON:0004208!9.37e-09!16;UBERON:0000922!9.61e-09!612;UBERON:0004111!1.04e-08!241;UBERON:0000080!1.72e-08!18;UBERON:0002120!1.72e-08!18;UBERON:0004875!1.72e-08!18;UBERON:0005721!1.72e-08!18;UBERON:0005754!1.72e-08!18;UBERON:0007297!1.72e-08!18;UBERON:0002113!1.97e-08!27;UBERON:0003918!1.97e-08!27;UBERON:0005095!1.97e-08!27;UBERON:0007687!1.97e-08!27;UBERON:0003887!2.67e-08!21;UBERON:0000058!3.65e-08!26;UBERON:0005177!5.16e-08!107;UBERON:0000489!5.73e-08!32;UBERON:0006555!6.33e-08!17;UBERON:0005103!6.33e-08!17;UBERON:0000083!6.33e-08!17;UBERON:0009201!6.33e-08!17;UBERON:0004819!6.33e-08!17;UBERON:0006553!6.33e-08!17;UBERON:0003074!6.33e-08!17;UBERON:0003060!6.33e-08!17;UBERON:0003103!6.96e-08!69;UBERON:0000353!1.24e-07!17;UBERON:0000923!1.80e-07!604;UBERON:0005291!1.80e-07!604;UBERON:0006598!1.80e-07!604;UBERON:0002532!1.80e-07!604;UBERON:0002050!2.30e-07!605;UBERON:0005423!2.30e-07!605;UBERON:0004876!4.40e-07!20;UBERON:0005157!4.95e-07!51;UBERON:0000481!5.25e-07!347;UBERON:0003914!6.38e-07!118;UBERON:0001225!7.95e-07!13;UBERON:0008987!7.95e-07!13;UBERON:0003064!8.39e-07!37 | ||
|ontology_enrichment_uberon_v019=UBERON:0000353;1.07e-12;15!UBERON:0004638;2.39e-12;18!UBERON:0001986;2.39e-12;18!UBERON:0004852;2.39e-12;18!UBERON:0006554;1.16e-10;30!UBERON:0001008;1.16e-10;30!UBERON:0006555;2.51e-10;15!UBERON:0004819;2.51e-10;15!UBERON:0001285;2.51e-10;15!UBERON:0007684;2.51e-10;15!UBERON:0001225;3.56e-10;12!UBERON:0008987;3.56e-10;12!UBERON:0000365;9.18e-10;5!UBERON:0000487;1.03e-09;22!UBERON:0006914;2.67e-08;25!UBERON:0005910;4.12e-08;6!UBERON:0000490;6.51e-08;33!UBERON:0001851;6.63e-08;15!UBERON:0000486;9.64e-08;12!UBERON:0000119;3.74e-07;139!UBERON:0003915;5.46e-07;9!UBERON:0004700;5.46e-07;9!UBERON:0001917;5.46e-07;9!UBERON:0001638;6.19e-07;9!UBERON:0003920;6.19e-07;9!UBERON:0004582;6.19e-07;9!UBERON:0000483;7.11e-07;136!UBERON:0000964;9.40e-07;4!UBERON:0010409;9.40e-07;4 | |||
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| ||
|short_description=p6@SEMA3F | |short_description=p6@SEMA3F | ||
}} | }} |
Latest revision as of 18:13, 18 September 2015
Short description: | p6@SEMA3F |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SEMA3F_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000426511, NM_004186, uc003cyj.2_5end |
EntrezGene: | SEMA3F |
HGNC: | 10728 |
UniProt: | C9IYS6Q13275 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.28e-23 | 253 |
endothelial cell | 3.91e-21 | 36 |
meso-epithelial cell | 9.06e-20 | 45 |
endothelial cell of vascular tree | 5.71e-13 | 24 |
lining cell | 1.07e-12 | 58 |
barrier cell | 1.07e-12 | 58 |
blood vessel endothelial cell | 1.40e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.40e-12 | 18 |
transitional epithelial cell | 3.19e-12 | 4 |
urothelial cell | 3.19e-12 | 4 |
squamous epithelial cell | 4.77e-11 | 63 |
embryonic cell | 5.88e-11 | 250 |
vein endothelial cell | 9.91e-11 | 6 |
epithelial cell of nephron | 2.82e-10 | 15 |
kidney cortical cell | 4.42e-10 | 12 |
renal cortical epithelial cell | 4.42e-10 | 12 |
glomerular endothelial cell | 3.81e-09 | 5 |
endothelial cell of umbilical vein | 6.63e-09 | 3 |
kidney cell | 6.89e-09 | 17 |
kidney epithelial cell | 6.89e-09 | 17 |
endo-epithelial cell | 1.66e-08 | 42 |
respiratory epithelial cell | 1.71e-08 | 13 |
endodermal cell | 3.17e-07 | 58 |
endothelial cell of artery | 3.83e-07 | 9 |
corneal epithelial cell | 8.30e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
parenchyma | 1.18e-12 | 15 |
blood vessel endothelium | 1.40e-12 | 18 |
endothelium | 1.40e-12 | 18 |
cardiovascular system endothelium | 1.40e-12 | 18 |
urinary system structure | 1.14e-10 | 47 |
renal system | 2.31e-10 | 48 |
nephron epithelium | 2.82e-10 | 15 |
renal tubule | 2.82e-10 | 15 |
nephron tubule | 2.82e-10 | 15 |
nephron | 2.82e-10 | 15 |
uriniferous tubule | 2.82e-10 | 15 |
nephrogenic mesenchyme | 2.82e-10 | 15 |
cortex of kidney | 4.42e-10 | 12 |
renal parenchyma | 4.42e-10 | 12 |
simple squamous epithelium | 6.70e-10 | 22 |
urothelium | 9.43e-10 | 5 |
excretory tube | 1.54e-09 | 16 |
kidney epithelium | 1.54e-09 | 16 |
squamous epithelium | 1.85e-08 | 25 |
transitional epithelium | 4.22e-08 | 6 |
cortex | 7.84e-08 | 15 |
epithelium | 3.05e-07 | 306 |
endothelial tube | 3.83e-07 | 9 |
arterial system endothelium | 3.83e-07 | 9 |
endothelium of artery | 3.83e-07 | 9 |
cell layer | 4.56e-07 | 309 |
vein | 5.13e-07 | 9 |
venous blood vessel | 5.13e-07 | 9 |
venous system | 5.13e-07 | 9 |