FFCP PHASE1:Hg19::chr1:6240314..6240315,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26038 | |EntrezGene=26038 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16816 | |HGNC=16816 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TDI0 | |UniProt=Q8TDI0 | ||
|association_with_transcript=-120bp_to_NM_015557_5end | |association_with_transcript=-120bp_to_NM_015557_5end | ||
|cluster_id=chr1:6240314..6240315,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_8_at_CHD5_5end | |description=CAGE_peak_8_at_CHD5_5end | ||
|id=chr1:6240314..6240315,- | |id=chr1:6240314..6240315,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!5.41e-64!34;UBERON:0002619!5.78e-62!22;UBERON:0001869!3.41e-61!32;UBERON:0001049!3.97e-60!57;UBERON:0005068!3.97e-60!57;UBERON:0006241!3.97e-60!57;UBERON:0007135!3.97e-60!57;UBERON:0002791!5.89e-59!33;UBERON:0002780!1.27e-58!41;UBERON:0001890!1.27e-58!41;UBERON:0006240!1.27e-58!41;UBERON:0002616!5.64e-58!59;UBERON:0000955!2.72e-57!69;UBERON:0006238!2.72e-57!69;UBERON:0002020!3.05e-57!34;UBERON:0003528!3.05e-57!34;UBERON:0003080!3.62e-57!42;UBERON:0000956!1.79e-54!25;UBERON:0000203!1.79e-54!25;UBERON:0001017!1.38e-51!82;UBERON:0001950!5.62e-51!20;UBERON:0005743!5.04e-49!86;UBERON:0000073!4.96e-44!94;UBERON:0001016!4.96e-44!94;UBERON:0003075!5.14e-42!86;UBERON:0007284!5.14e-42!86;UBERON:0002346!5.78e-40!90;UBERON:0007023!2.10e-39!115;UBERON:0003056!1.96e-38!61;UBERON:0000033!3.75e-33!123;UBERON:0000153!2.07e-31!129;UBERON:0007811!2.07e-31!129;UBERON:0000200!7.39e-28!6;UBERON:0004121!1.06e-22!169;UBERON:0000924!4.50e-22!173;UBERON:0006601!4.50e-22!173;UBERON:0000349!4.03e-21!5;UBERON:0002771!1.18e-20!3;UBERON:0001871!1.94e-20!7;UBERON:0000025!3.81e-16!194;UBERON:0001954!2.63e-14!2;UBERON:0003022!2.63e-14!2;UBERON:0002421!2.63e-14!2;UBERON:0002600!2.63e-14!2;UBERON:0002021!8.06e-13!5;UBERON:0001872!9.07e-13!5;UBERON:0004111!4.53e-12!241;UBERON:0000064!3.43e-11!219;UBERON:0000477!1.84e-10!286;UBERON:0000988!2.30e-09!3;UBERON:0000483!2.74e-09!309;UBERON:0000119!3.76e-09!312;UBERON:0000475!7.48e-09!365;UBERON:0004733!1.61e-08!12;UBERON:0002028!1.61e-08!12;UBERON:0007277!1.61e-08!12;UBERON:0002902!2.70e-08!1;UBERON:0009899!2.70e-08!1;UBERON:0002581!3.32e-08!1;UBERON:0007190!4.35e-08!1;UBERON:0004732!7.12e-08!13;UBERON:0002022!7.45e-08!1;UBERON:0001882!8.51e-08!1;UBERON:0005403!8.51e-08!1;UBERON:0003112!9.72e-08!1;UBERON:0000032!9.72e-08!1;UBERON:0005253!9.72e-08!1;UBERON:0003128!9.72e-08!1;UBERON:0002241!9.72e-08!1;UBERON:0001703!9.72e-08!1;UBERON:0004761!9.72e-08!1;UBERON:0009617!9.72e-08!1;UBERON:0002298!1.31e-07!8;UBERON:0002336!1.87e-07!1;UBERON:0001018!1.87e-07!1;UBERON:0002473!1.87e-07!1;UBERON:0005340!1.87e-07!1;UBERON:0002316!1.87e-07!1;UBERON:0003544!1.87e-07!1;UBERON:0001020!1.87e-07!1;UBERON:0005970!1.87e-07!1;UBERON:0002437!1.87e-07!1;UBERON:0002363!1.99e-07!1;UBERON:0007647!1.99e-07!1;UBERON:0010115!1.99e-07!1;UBERON:0000369!3.03e-07!4;UBERON:0002435!3.03e-07!4;UBERON:0000204!3.03e-07!4;UBERON:0010082!3.03e-07!4;UBERON:0002420!7.11e-07!9;UBERON:0007245!7.11e-07!9;UBERON:0010009!7.11e-07!9;UBERON:0010011!7.11e-07!9;UBERON:0000454!7.11e-07!9;UBERON:0003076!7.72e-07!15;UBERON:0003057!7.72e-07!15;UBERON:0002308!7.72e-07!9;UBERON:0000125!7.72e-07!9;UBERON:0002680!8.55e-07!9;UBERON:0001895!8.55e-07!9;UBERON:0010092!8.55e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002902;2.39e-66;1!UBERON:0009899;2.39e-66;1!UBERON:0002771;5.04e-34;2!UBERON:0001950;3.84e-29;20!UBERON:0002619;1.01e-26;22!UBERON:0000956;8.76e-24;25!UBERON:0000203;8.76e-24;25!UBERON:0003528;7.13e-17;34!UBERON:0002020;7.13e-17;34!UBERON:0001893;2.35e-15;34!UBERON:0002791;1.05e-14;32!UBERON:0001869;1.05e-14;32!UBERON:0001872;1.60e-14;5!UBERON:0002021;1.60e-14;5!UBERON:0000200;2.45e-12;6!UBERON:0001871;8.99e-11;6!UBERON:0002780;1.50e-10;41!UBERON:0001890;1.50e-10;41!UBERON:0000073;3.80e-10;53!UBERON:0002616;3.80e-10;53!UBERON:0000955;6.73e-10;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002902,1.23e-66,1;UBERON:0009899,1.23e-66,1;UBERON:0002771,5.04e-34,2;UBERON:0001950,3.84e-29,20;UBERON:0002619,1.01e-26,22;UBERON:0000956,8.76e-24,25;UBERON:0000203,8.76e-24,25;UBERON:0002791,5.33e-19,32;UBERON:0001869,5.33e-19,32;UBERON:0003528,5.55e-18,34;UBERON:0002020,5.55e-18,34;UBERON:0001893,5.55e-18,34;UBERON:0002780,3.52e-15,41;UBERON:0001890,3.52e-15,41;UBERON:0003080,3.52e-15,41;UBERON:0006240,3.52e-15,41;UBERON:0002021,1.40e-14,5;UBERON:0001872,1.83e-14,5;UBERON:0000200,2.45e-12,6;UBERON:0000073,4.68e-12,53;UBERON:0002616,4.68e-12,53;UBERON:0001049,1.77e-11,56;UBERON:0005068,1.77e-11,56;UBERON:0006241,1.77e-11,56;UBERON:0007135,1.77e-11,56;UBERON:0001871,8.99e-11,6;UBERON:0003056,1.22e-10,61;UBERON:0000955,1.53e-09,68;UBERON:0006238,1.53e-09,68;UBERON:0001017,3.31e-08,81;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0001016,1.68e-07,89 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886351143382302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.544813624446302,0,0,0,0,0,0.425246896606173,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0.876336514945499,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10606748921385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385375350578757,0,0.957803154342908,0.615349092722265,0,1.45230230174858,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.87798860003913,0,1.03343398250592,0.507326481551255,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0.203909198930495,0.986591603442736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.475940431336403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886351143382302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.544813624446302,0,0,0,0,0,0.425246896606173,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0.876336514945499,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10606748921385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385375350578757,0,0.957803154342908,0.615349092722265,0,1.45230230174858,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.87798860003913,0,1.03343398250592,0.507326481551255,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0.203909198930495,0.986591603442736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.475940431336403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@CHD5 | |short_description=p8@CHD5 | ||
}} | }} |
Latest revision as of 19:03, 18 September 2015
Short description: | p8@CHD5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_CHD5_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -120bp_to_NM_015557_5end |
EntrezGene: | CHD5 |
HGNC: | 16816 |
UniProt: | Q8TDI0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital pole | 1.23e-66 | 1 |
pole of cerebral hemisphere | 1.23e-66 | 1 |
middle temporal gyrus | 5.04e-34 | 2 |
neocortex | 3.84e-29 | 20 |
regional part of cerebral cortex | 1.01e-26 | 22 |
cerebral cortex | 8.76e-24 | 25 |
pallium | 8.76e-24 | 25 |
regional part of telencephalon | 5.33e-19 | 32 |
cerebral hemisphere | 5.33e-19 | 32 |
brain grey matter | 5.55e-18 | 34 |
gray matter | 5.55e-18 | 34 |
telencephalon | 5.55e-18 | 34 |
regional part of forebrain | 3.52e-15 | 41 |
forebrain | 3.52e-15 | 41 |
anterior neural tube | 3.52e-15 | 41 |
future forebrain | 3.52e-15 | 41 |
occipital lobe | 1.40e-14 | 5 |
parietal lobe | 1.83e-14 | 5 |
gyrus | 2.45e-12 | 6 |
regional part of nervous system | 4.68e-12 | 53 |
regional part of brain | 4.68e-12 | 53 |
neural tube | 1.77e-11 | 56 |
neural rod | 1.77e-11 | 56 |
future spinal cord | 1.77e-11 | 56 |
neural keel | 1.77e-11 | 56 |
temporal lobe | 8.99e-11 | 6 |
pre-chordal neural plate | 1.22e-10 | 61 |
brain | 1.53e-09 | 68 |
future brain | 1.53e-09 | 68 |
central nervous system | 3.31e-08 | 81 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |
nervous system | 1.68e-07 | 89 |