FFCP PHASE1:Hg19::chr17:19437132..19437197,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:19437132..19437197,+
|short_description=p1@SLC47A1
|description=CAGE_peak_1_at_SLC47A1_5end
|association_with_transcript=0bp_to_ENST00000270570,ENST000003...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55244 | |EntrezGene=55244 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25588 | |HGNC=25588 | ||
|TSSclassifier=strong | |||
|UniProt=Q96FL8,E7EX57,B4DYV3 | |UniProt=Q96FL8,E7EX57,B4DYV3 | ||
|association_with_transcript=0bp_to_ENST00000270570,ENST00000395585,ENST00000436810,ENST00000457293,ENST00000497548,ENST00000542886,NM_018242,uc002gvx.2,uc002gvy.1,uc010cqp.1,uc010vyy.1,uc010vyz.1_5end | |||
|cluster_id=chr17:19437132..19437197,+ | |||
|description=CAGE_peak_1_at_SLC47A1_5end | |||
|id=chr17:19437132..19437197,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003104;3.18e-08;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.99e-17!115;UBERON:0000922!8.29e-14!612;UBERON:0002050!1.65e-12!605;UBERON:0005423!1.65e-12!605;UBERON:0000923!3.09e-12!604;UBERON:0005291!3.09e-12!604;UBERON:0006598!3.09e-12!604;UBERON:0002532!3.09e-12!604;UBERON:0000468!5.77e-12!659;UBERON:0002346!6.07e-12!90;UBERON:0003075!1.52e-11!86;UBERON:0007284!1.52e-11!86;UBERON:0000073!4.51e-11!94;UBERON:0001016!4.51e-11!94;UBERON:0000924!1.50e-10!173;UBERON:0006601!1.50e-10!173;UBERON:0000062!1.94e-10!511;UBERON:0005743!3.31e-10!86;UBERON:0004121!3.86e-10!169;UBERON:0000467!1.47e-09!625;UBERON:0000480!2.41e-09!626;UBERON:0001049!9.10e-09!57;UBERON:0005068!9.10e-09!57;UBERON:0006241!9.10e-09!57;UBERON:0007135!9.10e-09!57;UBERON:0001017!1.13e-08!82;UBERON:0000481!5.33e-08!347;UBERON:0000477!5.63e-08!286;UBERON:0001048!1.30e-07!168;UBERON:0000033!1.46e-07!123;UBERON:0003056!2.10e-07!61;UBERON:0000153!2.26e-07!129;UBERON:0007811!2.26e-07!129;UBERON:0000955!7.07e-07!69;UBERON:0006238!7.07e-07!69;UBERON:0002616!7.70e-07!59;UBERON:0003080!8.91e-07!42;UBERON:0002780!9.28e-07!41;UBERON:0001890!9.28e-07!41;UBERON:0006240!9.28e-07!41 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.13e-17,114;UBERON:0011216,2.78e-12,223;UBERON:0002346,1.38e-10,86;UBERON:0003075,2.70e-10,82;UBERON:0007284,2.70e-10,82;UBERON:0001016,4.18e-09,89;UBERON:0000922,6.96e-09,592;UBERON:0010371,1.32e-08,104;UBERON:0001049,2.34e-08,56;UBERON:0005068,2.34e-08,56;UBERON:0006241,2.34e-08,56;UBERON:0007135,2.34e-08,56;UBERON:0001017,2.69e-08,81;UBERON:0004121,3.20e-08,171;UBERON:0000924,3.20e-08,171;UBERON:0006601,3.20e-08,171;UBERON:0003056,1.10e-07,61;UBERON:0000073,1.80e-07,53;UBERON:0002616,1.80e-07,53;UBERON:0010314,2.55e-07,132;UBERON:0002780,6.60e-07,41;UBERON:0001890,6.60e-07,41;UBERON:0003080,6.60e-07,41;UBERON:0006240,6.60e-07,41;UBERON:0005423,7.78e-07,581;UBERON:0001041,8.91e-07,87 | |||
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| ||
|short_description=p1@SLC47A1 | |||
}} | }} |
Latest revision as of 00:19, 19 September 2015
Short description: | p1@SLC47A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC47A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000270570, ENST00000395585, ENST00000436810, ENST00000457293, ENST00000497548, ENST00000542886, NM_018242, uc002gvx.2, uc002gvy.1, uc010cqp.1, uc010vyy.1, uc010vyz.1_5end |
EntrezGene: | SLC47A1 |
HGNC: | 25588 |
UniProt: | Q96FL8E7EX57B4DYV3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.13e-17 | 114 |
organ system subdivision | 2.78e-12 | 223 |
neurectoderm | 1.38e-10 | 86 |
neural plate | 2.70e-10 | 82 |
presumptive neural plate | 2.70e-10 | 82 |
nervous system | 4.18e-09 | 89 |
embryo | 6.96e-09 | 592 |
ecto-epithelium | 1.32e-08 | 104 |
neural tube | 2.34e-08 | 56 |
neural rod | 2.34e-08 | 56 |
future spinal cord | 2.34e-08 | 56 |
neural keel | 2.34e-08 | 56 |
central nervous system | 2.69e-08 | 81 |
ectoderm-derived structure | 3.20e-08 | 171 |
ectoderm | 3.20e-08 | 171 |
presumptive ectoderm | 3.20e-08 | 171 |
pre-chordal neural plate | 1.10e-07 | 61 |
regional part of nervous system | 1.80e-07 | 53 |
regional part of brain | 1.80e-07 | 53 |
structure with developmental contribution from neural crest | 2.55e-07 | 132 |
regional part of forebrain | 6.60e-07 | 41 |
forebrain | 6.60e-07 | 41 |
anterior neural tube | 6.60e-07 | 41 |
future forebrain | 6.60e-07 | 41 |
developing anatomical structure | 7.78e-07 | 581 |
foregut | 8.91e-07 | 87 |