FFCP PHASE1:Hg19::chr10:70980051..70980069,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:70980051..70980069,+ to FFCP PHASE1:Hg19::chr10:70980051..70980069,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=80201 | |EntrezGene=80201 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23302 | |HGNC=23302 | ||
|TSSclassifier=strong | |||
|UniProt=Q2TB90,B3KT70 | |UniProt=Q2TB90,B3KT70 | ||
|association_with_transcript=0bp_to_ENST00000354624,ENST00000395086,ENST00000395087,NM_025130,uc001jpf.3_5end | |||
|cluster_id=chr10:70980051..70980069,+ | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_3_at_HKDC1_5end | |||
|id=chr10:70980051..70980069,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.35e-12!254;CL:1000497!5.84e-10!18;CL:0002518!5.84e-10!18;CL:1000507!2.74e-09!12;CL:1000494!2.74e-09!12;CL:0000223!3.16e-09!59;CL:1000449!7.15e-08!16;CL:0000077!3.17e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:1000507;3.55e-25;10!CL:1000494;3.55e-25;10!CL:1000497;5.75e-25;17!CL:0002518;5.75e-25;17!CL:1000449;7.53e-20;15!CL:0002681;3.30e-16;12!CL:0002584;3.30e-16;12!CL:0002586;1.23e-11;3!CL:0000239;1.10e-10;3!CL:1000615;1.10e-10;3!CL:0002306;1.10e-10;3!CL:0000077;5.23e-10;19!CL:0000149;8.18e-09;4!CL:0000650;2.23e-07;2!CL:1000500;2.23e-07;2!CL:1000618;2.23e-07;2!CL:1001318;2.23e-07;2!CL:0002173;2.23e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,3.48e-25,10;CL:1000494,3.48e-25,10;CL:1000497,7.07e-25,17;CL:0002518,7.07e-25,17;CL:1000449,9.33e-20,15;CL:0000066,1.96e-16,253;CL:0002681,4.07e-16,12;CL:0002584,4.07e-16,12;CL:0002586,1.23e-11,3;CL:0000239,1.03e-10,3;CL:1000615,1.03e-10,3;CL:0002306,1.03e-10,3;CL:0000077,6.06e-10,19;CL:0000149,8.20e-09,4;CL:0000650,2.31e-07,2;CL:1000500,2.31e-07,2;CL:1000618,2.31e-07,2;CL:1001318,2.31e-07,2;CL:0002173,2.31e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:193!1.66e-11!29;DOID:120!2.63e-11!27;DOID:299!5.81e-11!25;DOID:305!2.45e-09!106;DOID:162!6.39e-09!235;DOID:14566!7.09e-09!239;DOID:0050687!7.87e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:299;4.84e-09;25!DOID:120;8.55e-08;27!DOID:193;3.78e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:299,5.11e-09,25;DOID:120,8.49e-08,27;DOID:305,2.03e-07,106;DOID:193,3.75e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0000466!1.42e-11!126;UBERON:0005172!2.73e-10!55;UBERON:0005173!2.73e-10!55;UBERON:0002113!9.67e-10!27;UBERON:0003918!9.67e-10!27;UBERON:0005095!9.67e-10!27;UBERON:0007687!9.67e-10!27;UBERON:0000058!1.66e-09!26;UBERON:0005177!1.97e-09!107;UBERON:0009773!2.74e-09!12;UBERON:0001231!2.74e-09!12;UBERON:0004810!2.74e-09!12;UBERON:0006555!1.38e-08!17;UBERON:0005103!1.38e-08!17;UBERON:0000083!1.38e-08!17;UBERON:0009201!1.38e-08!17;UBERON:0004819!1.38e-08!17;UBERON:0006553!1.38e-08!17;UBERON:0003074!1.38e-08!17;UBERON:0003060!1.38e-08!17;UBERON:0000489!1.43e-08!32;UBERON:0002417!1.53e-08!61;UBERON:0000916!1.53e-08!61;UBERON:0000464!2.87e-08!104;UBERON:0000080!6.13e-08!18;UBERON:0002120!6.13e-08!18;UBERON:0004875!6.13e-08!18;UBERON:0005721!6.13e-08!18;UBERON:0005754!6.13e-08!18;UBERON:0007297!6.13e-08!18;UBERON:0004211!7.15e-08!16;UBERON:0001285!7.15e-08!16;UBERON:0007684!7.15e-08!16;UBERON:0003220!7.15e-08!16;UBERON:0004208!7.15e-08!16;UBERON:0003886!1.13e-07!63;UBERON:0000966!1.14e-07!5;UBERON:0005388!1.14e-07!5;UBERON:0001802!1.14e-07!5;UBERON:0009569!3.98e-07!113;UBERON:0002553!6.73e-07!70;UBERON:0000481!6.96e-07!347;UBERON:0003133!6.98e-07!48;UBERON:0004876!7.53e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;3.55e-25;10!UBERON:0009773;3.55e-25;10!UBERON:0001231;3.55e-25;10!UBERON:0004810;3.55e-25;10!UBERON:0006555;7.53e-20;15!UBERON:0004819;7.53e-20;15!UBERON:0001285;7.53e-20;15!UBERON:0007684;7.53e-20;15!UBERON:0002113;7.03e-17;24!UBERON:0011143;7.03e-17;24!UBERON:0001851;2.87e-16;15!UBERON:0001225;3.30e-16;12!UBERON:0008987;3.30e-16;12!UBERON:0000489;1.67e-13;29!UBERON:0006554;5.79e-13;30!UBERON:0001008;5.79e-13;30!UBERON:0000353;1.09e-12;15!UBERON:0001781;1.23e-11;3!UBERON:0001782;1.23e-11;3!UBERON:0006853;1.10e-10;3!UBERON:0007685;1.10e-10;3!UBERON:0004134;1.10e-10;3!UBERON:0005172;1.08e-08;52!UBERON:0005173;1.08e-08;52!UBERON:0002394;1.48e-08;4!UBERON:0003928;1.48e-08;4!UBERON:0001905;2.73e-08;2!UBERON:0002757;2.73e-08;2!UBERON:0010134;2.73e-08;2!UBERON:0005408;2.73e-08;2!UBERON:0001899;2.73e-08;2!UBERON:0005409;5.53e-08;22!UBERON:0002294;5.88e-08;7!UBERON:0001173;5.88e-08;7!UBERON:0007625;1.37e-07;11!UBERON:0003567;2.23e-07;2!UBERON:0003838;2.23e-07;2!UBERON:0003586;2.23e-07;2!UBERON:0005169;2.23e-07;2!UBERON:0002321;2.23e-07;2!UBERON:0005215;2.23e-07;2!UBERON:0002303;2.23e-07;2!UBERON:0002319;2.23e-07;2!UBERON:0002417;3.27e-07;58!UBERON:0000916;3.27e-07;58!UBERON:0000966;4.12e-07;5!UBERON:0005388;4.12e-07;5!UBERON:0001802;4.12e-07;5!UBERON:0002108;8.74e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,3.48e-25,10;UBERON:0004211,9.33e-20,15;UBERON:0009773,9.33e-20,15;UBERON:0001231,9.33e-20,15;UBERON:0001285,9.33e-20,15;UBERON:0007684,9.33e-20,15;UBERON:0004208,9.33e-20,15;UBERON:0006555,2.16e-18,16;UBERON:0004819,2.16e-18,16;UBERON:0001851,3.47e-16,15;UBERON:0001225,4.07e-16,12;UBERON:0008987,4.07e-16,12;UBERON:0002113,2.57e-15,26;UBERON:0003918,2.57e-15,26;UBERON:0011143,2.57e-15,26;UBERON:0005095,2.57e-15,26;UBERON:0007687,2.57e-15,26;UBERON:0005172,4.32e-13,54;UBERON:0005173,4.32e-13,54;UBERON:0000353,1.29e-12,15;UBERON:0000489,2.05e-12,31;UBERON:0001782,1.23e-11,3;UBERON:0005424,1.23e-11,3;UBERON:0002417,2.24e-11,60;UBERON:0000916,2.24e-11,60;UBERON:0006853,1.03e-10,3;UBERON:0007685,1.03e-10,3;UBERON:0004134,1.03e-10,3;UBERON:0001781,8.20e-09,4;UBERON:0001905,2.79e-08,2;UBERON:0002757,2.79e-08,2;UBERON:0010134,2.79e-08,2;UBERON:0005408,2.79e-08,2;UBERON:0001899,2.79e-08,2;UBERON:0005177,7.88e-08,101;UBERON:0007625,1.17e-07,11;UBERON:0003567,2.31e-07,2;UBERON:0003838,2.31e-07,2;UBERON:0003586,2.31e-07,2;UBERON:0005169,2.31e-07,2;UBERON:0002321,2.31e-07,2;UBERON:0005215,2.31e-07,2;UBERON:0002303,2.31e-07,2;UBERON:0002319,2.31e-07,2;UBERON:0006554,2.55e-07,47;UBERON:0001008,4.06e-07,48;UBERON:0005409,6.43e-07,25;UBERON:0002108,8.26e-07,4 | |||
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| ||
|short_description=p3@HKDC1 | |||
}} | }} |
Latest revision as of 00:47, 19 September 2015
Short description: | p3@HKDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HKDC1_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | 0bp_to_ENST00000354624, ENST00000395086, ENST00000395087, NM_025130, uc001jpf.3_5end |
EntrezGene: | HKDC1 |
HGNC: | 23302 |
UniProt: | Q2TB90B3KT70 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 3.48e-25 | 10 |
nephron tubule epithelial cell | 3.48e-25 | 10 |
kidney cell | 7.07e-25 | 17 |
kidney epithelial cell | 7.07e-25 | 17 |
epithelial cell of nephron | 9.33e-20 | 15 |
epithelial cell | 1.96e-16 | 253 |
kidney cortical cell | 4.07e-16 | 12 |
renal cortical epithelial cell | 4.07e-16 | 12 |
retinal pigment epithelial cell | 1.23e-11 | 3 |
brush border epithelial cell | 1.03e-10 | 3 |
kidney cortex tubule cell | 1.03e-10 | 3 |
epithelial cell of proximal tubule | 1.03e-10 | 3 |
mesothelial cell | 6.06e-10 | 19 |
visual pigment cell | 8.20e-09 | 4 |
mesangial cell | 2.31e-07 | 2 |
kidney interstitial cell | 2.31e-07 | 2 |
juxtaglomerular complex cell | 2.31e-07 | 2 |
renal interstitial pericyte | 2.31e-07 | 2 |
extraglomerular mesangial cell | 2.31e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 5.11e-09 | 25 |
female reproductive organ cancer | 8.49e-08 | 27 |
carcinoma | 2.03e-07 | 106 |
reproductive organ cancer | 3.75e-07 | 29 |