FFCP PHASE1:Hg19::chr18:54814288..54814354,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=284257 | |EntrezGene=284257 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28505 | |HGNC=28505 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_NR_033372,uc002lgm.2_5end | |association_with_transcript=0bp_to_NR_033372,uc002lgm.2_5end | ||
|cluster_id=chr18:54814288..54814354,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_BOD1P_5end | |description=CAGE_peak_1_at_BOD1P_5end | ||
|id=chr18:54814288..54814354,+ | |id=chr18:54814288..54814354,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.30e-40;1!UBERON:0007297;5.70e-21;2!UBERON:0009117;5.90e-17;10!UBERON:0005564;5.90e-17;10!UBERON:0003056;2.09e-14;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003135!4.30e-23!11;UBERON:0000473!1.27e-20!8;UBERON:0006947!1.41e-14!3;UBERON:0004054!1.41e-14!3;UBERON:0001301!1.18e-11!1;UBERON:0000941!1.31e-11!1;UBERON:0004904!1.31e-11!1;UBERON:0002464!1.31e-11!1;UBERON:0001021!1.31e-11!1;UBERON:0001785!1.31e-11!1;UBERON:0003101!1.65e-11!22;UBERON:0000079!1.65e-11!22;UBERON:0000998!1.78e-11!1;UBERON:0006868!1.78e-11!1;UBERON:0005904!3.64e-11!4;UBERON:0002581!4.44e-11!1;UBERON:0001882!4.91e-11!1;UBERON:0005403!4.91e-11!1;UBERON:0002363!6.00e-11!1;UBERON:0007647!6.00e-11!1;UBERON:0010115!6.00e-11!1;UBERON:0000991!5.53e-08!21;UBERON:0009196!5.53e-08!21;UBERON:0009117!5.53e-08!21;UBERON:0005564!5.53e-08!21;UBERON:0004176!1.26e-07!22;UBERON:0007023!2.95e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001301;2.21e-40;1!UBERON:0000941;3.30e-40;1!UBERON:0001785;3.30e-40;1!UBERON:0002464;3.30e-40;1!UBERON:0004904;3.30e-40;1!UBERON:0001021;3.30e-40;1!UBERON:0003135;4.29e-33;11!UBERON:0000473;6.64e-21;8!UBERON:0003714;6.96e-21;2!UBERON:0005162;6.96e-21;2!UBERON:0000122;6.96e-21;2!UBERON:0003101;4.85e-17;22!UBERON:0000079;4.85e-17;22!UBERON:0006947;1.83e-14;3!UBERON:0004054;1.83e-14;3!UBERON:0005904;3.42e-11;4!UBERON:0000991;1.27e-08;21!UBERON:0003133;6.46e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,2.21e-40,1;UBERON:0000941,3.30e-40,1;UBERON:0001785,3.30e-40,1;UBERON:0002464,3.30e-40,1;UBERON:0004904,3.30e-40,1;UBERON:0001021,3.30e-40,1;UBERON:0003902,3.30e-40,1;UBERON:0005425,3.30e-40,1;UBERON:0003135,4.29e-33,11;UBERON:0000473,6.64e-21,8;UBERON:0003714,6.96e-21,2;UBERON:0005162,6.96e-21,2;UBERON:0000122,6.96e-21,2;UBERON:0003101,4.85e-17,22;UBERON:0000079,4.85e-17,22;UBERON:0006947,1.83e-14,3;UBERON:0004054,1.83e-14,3;UBERON:0005904,3.42e-11,4;UBERON:0001781,3.79e-11,4;UBERON:0000991,1.27e-08,21;UBERON:0009196,1.27e-08,21;UBERON:0009117,1.27e-08,21;UBERON:0005564,1.27e-08,21;UBERON:0004176,2.82e-08,22;UBERON:0003133,2.96e-08,48;UBERON:0000966,7.25e-08,6;UBERON:0005388,7.25e-08,6;UBERON:0001802,7.25e-08,6;UBERON:0003886,2.03e-07,54;UBERON:0005156,7.53e-07,59;UBERON:0000990,7.53e-07,59 | |||
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|short_description=p1@BOD1P | |short_description=p1@BOD1P | ||
}} | }} |
Latest revision as of 22:15, 19 September 2015
Short description: | p1@BOD1P |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BOD1P_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_NR_033372, uc002lgm.2_5end |
EntrezGene: | BOD1P |
HGNC: | 28505 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epididymis | 2.21e-40 | 1 |
cranial nerve II | 3.30e-40 | 1 |
cranial nerve | 3.30e-40 | 1 |
nerve trunk | 3.30e-40 | 1 |
nerve connecting eye with brain | 3.30e-40 | 1 |
nerve | 3.30e-40 | 1 |
retinal neural layer | 3.30e-40 | 1 |
presumptive neural retina | 3.30e-40 | 1 |
male reproductive organ | 4.29e-33 | 11 |
testis | 6.64e-21 | 8 |
neural tissue | 6.96e-21 | 2 |
multi cell component structure | 6.96e-21 | 2 |
neuron projection bundle | 6.96e-21 | 2 |
male organism | 4.85e-17 | 22 |
male reproductive system | 4.85e-17 | 22 |
male genital duct | 1.83e-14 | 3 |
internal male genitalia | 1.83e-14 | 3 |
duct of male reproductive system | 3.42e-11 | 4 |
layer of retina | 3.79e-11 | 4 |
gonad | 1.27e-08 | 21 |
indifferent external genitalia | 1.27e-08 | 21 |
indifferent gonad | 1.27e-08 | 21 |
gonad primordium | 1.27e-08 | 21 |
external genitalia | 2.82e-08 | 22 |
reproductive organ | 2.96e-08 | 48 |
retina | 7.25e-08 | 6 |
photoreceptor array | 7.25e-08 | 6 |
posterior segment of eyeball | 7.25e-08 | 6 |
body cavity precursor | 2.03e-07 | 54 |
reproductive structure | 7.53e-07 | 59 |
reproductive system | 7.53e-07 | 59 |