FFCP PHASE1:Hg19::chr12:67663239..67663255,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:67663239..67663255,+ to FFCP PHASE1:Hg19::chr12:67663239..67663255,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55832 | |EntrezGene=55832 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30688 | |HGNC=30688 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=69bp_to_ENST00000541058_5end | |||
|cluster_id=chr12:67663239..67663255,+ | |||
|description=CAGE_peak_3_at_CAND1_5end | |||
|id=chr12:67663239..67663255,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.38e-11!42;CL:0000860!1.58e-11!45;CL:0000557!2.59e-11!71;CL:0002009!1.89e-10!65;CL:0000839!7.62e-10!70;CL:0002194!1.69e-09!63;CL:0000576!1.69e-09!63;CL:0000040!1.69e-09!63;CL:0000559!1.69e-09!63;CL:0000766!7.46e-07!76 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.34e-12;33!CL:0002057;3.34e-12;33!CL:0000473;3.29e-08;39!CL:0000234;3.29e-08;39!CL:0000576;4.16e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.41e-12,42;CL:0002057,6.41e-12,42;CL:0000557,3.44e-11,67;CL:0002009,2.60e-10,61;CL:0000839,1.12e-09,66;CL:0000473,2.06e-09,48;CL:0000234,2.06e-09,48;CL:0002194,2.48e-09,59;CL:0000576,2.48e-09,59;CL:0000040,2.48e-09,59;CL:0000559,2.48e-09,59;CL:0000766,5.97e-07,72 | |||
|ontology_enrichment_development_v019=CL:0002057;8.94e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!1.78e-12!511;UBERON:0007023!2.05e-12!115;UBERON:0000073!4.26e-12!94;UBERON:0001016!4.26e-12!94;UBERON:0001017!6.68e-12!82;UBERON:0000955!1.19e-11!69;UBERON:0006238!1.19e-11!69;UBERON:0005743!2.23e-11!86;UBERON:0001049!2.29e-10!57;UBERON:0005068!2.29e-10!57;UBERON:0006241!2.29e-10!57;UBERON:0007135!2.29e-10!57;UBERON:0002616!3.34e-10!59;UBERON:0001474!4.88e-10!86;UBERON:0004765!2.18e-09!101;UBERON:0001434!2.18e-09!101;UBERON:0002780!2.20e-09!41;UBERON:0001890!2.20e-09!41;UBERON:0006240!2.20e-09!41;UBERON:0002371!3.93e-09!80;UBERON:0003080!4.01e-09!42;UBERON:0001893!4.12e-08!34;UBERON:0002020!5.17e-08!34;UBERON:0003528!5.17e-08!34;UBERON:0002791!8.24e-08!33;UBERON:0001869!1.00e-07!32;UBERON:0002346!2.15e-07!90;UBERON:0003075!2.49e-07!86;UBERON:0007284!2.49e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.99e-07;41!UBERON:0001890;2.99e-07;41!UBERON:0001869;6.77e-07;32!UBERON:0003528;8.94e-07;34!UBERON:0002020;8.94e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.01e-12,114;UBERON:0001016,1.76e-12,89;UBERON:0000955,8.26e-12,68;UBERON:0006238,8.26e-12,68;UBERON:0001017,9.16e-12,81;UBERON:0011216,8.71e-11,223;UBERON:0001049,1.68e-10,56;UBERON:0005068,1.68e-10,56;UBERON:0006241,1.68e-10,56;UBERON:0007135,1.68e-10,56;UBERON:0001474,4.61e-10,82;UBERON:0004765,1.37e-09,90;UBERON:0000073,1.63e-09,53;UBERON:0002616,1.63e-09,53;UBERON:0001434,1.92e-09,100;UBERON:0002780,2.29e-09,41;UBERON:0001890,2.29e-09,41;UBERON:0003080,2.29e-09,41;UBERON:0006240,2.29e-09,41;UBERON:0002371,3.53e-09,76;UBERON:0002346,1.94e-08,86;UBERON:0003075,2.02e-08,82;UBERON:0007284,2.02e-08,82;UBERON:0001893,4.62e-08,34;UBERON:0003528,5.80e-08,34;UBERON:0002020,5.80e-08,34;UBERON:0001869,1.15e-07,32;UBERON:0002791,2.01e-07,32 | |||
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| ||
|short_description=p3@CAND1 | |||
}} | }} |
Latest revision as of 01:20, 20 September 2015
Short description: | p3@CAND1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CAND1_5end |
Coexpression cluster: | NA |
Association with transcript: | 69bp_to_ENST00000541058_5end |
EntrezGene: | CAND1 |
HGNC: | 30688 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.41e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.41e-12 | 42 |
granulocyte monocyte progenitor cell | 3.44e-11 | 67 |
macrophage dendritic cell progenitor | 2.60e-10 | 61 |
myeloid lineage restricted progenitor cell | 1.12e-09 | 66 |
defensive cell | 2.06e-09 | 48 |
phagocyte | 2.06e-09 | 48 |
monopoietic cell | 2.48e-09 | 59 |
monocyte | 2.48e-09 | 59 |
monoblast | 2.48e-09 | 59 |
promonocyte | 2.48e-09 | 59 |
myeloid leukocyte | 5.97e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.01e-12 | 114 |
nervous system | 1.76e-12 | 89 |
brain | 8.26e-12 | 68 |
future brain | 8.26e-12 | 68 |
central nervous system | 9.16e-12 | 81 |
organ system subdivision | 8.71e-11 | 223 |
neural tube | 1.68e-10 | 56 |
neural rod | 1.68e-10 | 56 |
future spinal cord | 1.68e-10 | 56 |
neural keel | 1.68e-10 | 56 |
bone element | 4.61e-10 | 82 |
skeletal element | 1.37e-09 | 90 |
regional part of nervous system | 1.63e-09 | 53 |
regional part of brain | 1.63e-09 | 53 |
skeletal system | 1.92e-09 | 100 |
regional part of forebrain | 2.29e-09 | 41 |
forebrain | 2.29e-09 | 41 |
anterior neural tube | 2.29e-09 | 41 |
future forebrain | 2.29e-09 | 41 |
bone marrow | 3.53e-09 | 76 |
neurectoderm | 1.94e-08 | 86 |
neural plate | 2.02e-08 | 82 |
presumptive neural plate | 2.02e-08 | 82 |
telencephalon | 4.62e-08 | 34 |
brain grey matter | 5.80e-08 | 34 |
gray matter | 5.80e-08 | 34 |
cerebral hemisphere | 1.15e-07 | 32 |
regional part of telencephalon | 2.01e-07 | 32 |