FFCP PHASE1:Hg19::chr14:50698396..50698407,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:50698396..50698407,- to FFCP PHASE1:Hg19::chr14:50698396..50698407,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6655 | |EntrezGene=6655 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11188 | |HGNC=11188 | ||
|TSSclassifier=strong | |||
|UniProt=Q07890 | |UniProt=Q07890 | ||
|association_with_transcript=-120bp_to_ENST00000216373_5end | |||
|cluster_id=chr14:50698396..50698407,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_5_at_SOS2_5end | |||
|id=chr14:50698396..50698407,- | |||
|ontology_enrichment_celltype=CL:0000766!3.91e-23!76;CL:0000557!6.76e-22!71;CL:0002009!9.37e-20!65;CL:0002194!6.23e-19!63;CL:0000576!6.23e-19!63;CL:0000040!6.23e-19!63;CL:0000559!6.23e-19!63;CL:0000839!9.48e-19!70;CL:0002057!1.51e-18!42;CL:0000738!1.70e-17!140;CL:0000860!1.29e-16!45;CL:0000763!4.67e-15!112;CL:0000049!4.67e-15!112;CL:0002031!3.40e-14!124;CL:0002087!5.91e-14!119;CL:0000037!4.58e-13!172;CL:0000566!4.58e-13!172;CL:0002032!3.23e-12!165;CL:0000837!3.23e-12!165;CL:0000988!2.45e-11!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.56e-14;33!CL:0002057;1.56e-14;33!CL:0000576;2.14e-14;48!CL:0000766;3.19e-14;69!CL:0000473;7.19e-14;39!CL:0000234;7.19e-14;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,9.71e-32,72;CL:0000557,3.63e-29,67;CL:0002009,2.91e-26,61;CL:0000839,1.10e-25,66;CL:0002194,5.25e-25,59;CL:0000576,5.25e-25,59;CL:0000040,5.25e-25,59;CL:0000559,5.25e-25,59;CL:0000473,2.33e-24,48;CL:0000234,2.33e-24,48;CL:0000738,9.76e-24,136;CL:0000860,1.84e-23,42;CL:0002057,1.84e-23,42;CL:0000763,1.78e-19,108;CL:0000049,1.78e-19,108;CL:0002031,4.73e-19,120;CL:0002087,1.69e-18,115;CL:0000037,4.21e-17,168;CL:0002032,6.17e-16,161;CL:0000837,6.17e-16,161;CL:0000988,6.87e-15,177;CL:0002393,4.94e-09,9;CL:0002397,4.94e-09,9 | |||
|ontology_enrichment_development_v019=CL:0002057;2.21e-16;42 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.84e-24!102;UBERON:0003061!8.84e-24!102;UBERON:0007023!8.76e-22!115;UBERON:0002193!1.60e-19!112;UBERON:0002371!7.00e-18!80;UBERON:0001474!1.05e-16!86;UBERON:0004765!1.57e-12!101;UBERON:0001434!1.57e-12!101;UBERON:0002780!5.02e-09!41;UBERON:0001890!5.02e-09!41;UBERON:0006240!5.02e-09!41;UBERON:0001049!6.44e-09!57;UBERON:0005068!6.44e-09!57;UBERON:0006241!6.44e-09!57;UBERON:0007135!6.44e-09!57;UBERON:0002405!1.56e-08!115;UBERON:0003080!2.43e-08!42;UBERON:0001893!6.50e-08!34;UBERON:0002020!8.69e-08!34;UBERON:0003528!8.69e-08!34;UBERON:0000178!1.30e-07!15;UBERON:0000179!1.30e-07!15;UBERON:0000463!1.30e-07!15;UBERON:0002791!1.46e-07!33;UBERON:0002616!1.70e-07!59;UBERON:0001869!3.85e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.07e-09;15!UBERON:0000179;1.07e-09;15!UBERON:0000463;1.07e-09;15!UBERON:0007023;5.21e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.27e-32,98;UBERON:0003061,1.27e-32,98;UBERON:0002193,6.03e-28,108;UBERON:0002371,3.86e-24,76;UBERON:0007023,4.85e-24,114;UBERON:0001474,6.60e-21,82;UBERON:0002405,3.49e-20,93;UBERON:0004765,5.59e-18,90;UBERON:0001434,4.82e-15,100;UBERON:0003081,1.15e-11,203;UBERON:0000178,1.31e-09,15;UBERON:0000179,1.31e-09,15;UBERON:0000463,1.31e-09,15;UBERON:0000073,2.18e-08,53;UBERON:0002616,2.18e-08,53;UBERON:0002780,2.50e-08,41;UBERON:0001890,2.50e-08,41;UBERON:0003080,2.50e-08,41;UBERON:0006240,2.50e-08,41;UBERON:0001049,3.11e-08,56;UBERON:0005068,3.11e-08,56;UBERON:0006241,3.11e-08,56;UBERON:0007135,3.11e-08,56;UBERON:0001893,6.05e-08,34;UBERON:0003528,8.69e-08,34;UBERON:0002020,8.69e-08,34;UBERON:0002791,5.06e-07,32;UBERON:0001869,6.70e-07,32 | |||
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| ||
|short_description=p5@SOS2 | |||
}} | }} |
Latest revision as of 03:29, 20 September 2015
Short description: | p5@SOS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SOS2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -120bp_to_ENST00000216373_5end |
EntrezGene: | SOS2 |
HGNC: | 11188 |
UniProt: | Q07890 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 9.71e-32 | 72 |
granulocyte monocyte progenitor cell | 3.63e-29 | 67 |
macrophage dendritic cell progenitor | 2.91e-26 | 61 |
myeloid lineage restricted progenitor cell | 1.10e-25 | 66 |
monopoietic cell | 5.25e-25 | 59 |
monocyte | 5.25e-25 | 59 |
monoblast | 5.25e-25 | 59 |
promonocyte | 5.25e-25 | 59 |
defensive cell | 2.33e-24 | 48 |
phagocyte | 2.33e-24 | 48 |
leukocyte | 9.76e-24 | 136 |
classical monocyte | 1.84e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.84e-23 | 42 |
myeloid cell | 1.78e-19 | 108 |
common myeloid progenitor | 1.78e-19 | 108 |
hematopoietic lineage restricted progenitor cell | 4.73e-19 | 120 |
nongranular leukocyte | 1.69e-18 | 115 |
hematopoietic stem cell | 4.21e-17 | 168 |
hematopoietic oligopotent progenitor cell | 6.17e-16 | 161 |
hematopoietic multipotent progenitor cell | 6.17e-16 | 161 |
hematopoietic cell | 6.87e-15 | 177 |
intermediate monocyte | 4.94e-09 | 9 |
CD14-positive, CD16-positive monocyte | 4.94e-09 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.27e-32 | 98 |
blood island | 1.27e-32 | 98 |
hemolymphoid system | 6.03e-28 | 108 |
bone marrow | 3.86e-24 | 76 |
adult organism | 4.85e-24 | 114 |
bone element | 6.60e-21 | 82 |
immune system | 3.49e-20 | 93 |
skeletal element | 5.59e-18 | 90 |
skeletal system | 4.82e-15 | 100 |
lateral plate mesoderm | 1.15e-11 | 203 |
blood | 1.31e-09 | 15 |
haemolymphatic fluid | 1.31e-09 | 15 |
organism substance | 1.31e-09 | 15 |
regional part of nervous system | 2.18e-08 | 53 |
regional part of brain | 2.18e-08 | 53 |
regional part of forebrain | 2.50e-08 | 41 |
forebrain | 2.50e-08 | 41 |
anterior neural tube | 2.50e-08 | 41 |
future forebrain | 2.50e-08 | 41 |
neural tube | 3.11e-08 | 56 |
neural rod | 3.11e-08 | 56 |
future spinal cord | 3.11e-08 | 56 |
neural keel | 3.11e-08 | 56 |
telencephalon | 6.05e-08 | 34 |
brain grey matter | 8.69e-08 | 34 |
gray matter | 8.69e-08 | 34 |
regional part of telencephalon | 5.06e-07 | 32 |
cerebral hemisphere | 6.70e-07 | 32 |