FFCP PHASE1:Hg19::chr6:125540724..125540736,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7164 | |EntrezGene=7164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12006 | |HGNC=12006 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-254bp_to_ENST00000524679_5end | |association_with_transcript=-254bp_to_ENST00000524679_5end | ||
|cluster_id=chr6:125540724..125540736,+ | |||
|coexpression_cluster_id=C42 | |||
|description=CAGE_peak_12_at_TPD52L1_5end | |description=CAGE_peak_12_at_TPD52L1_5end | ||
|id=chr6:125540724..125540736,+ | |id=chr6:125540724..125540736,+ | ||
|ontology_enrichment_celltype=CL:0000064!1.52e-13!3;CL:0005012!1.52e-13!3;CL:0000067!1.52e-13!3;CL:0002304!1.52e-13!3 | |ontology_enrichment_celltype=CL:0000064!1.52e-13!3;CL:0005012!1.52e-13!3;CL:0000067!1.52e-13!3;CL:0002304!1.52e-13!3 | ||
|ontology_enrichment_celltype_v019=CL:0000342;6.72e-26;1!CL:0002565;6.72e-26;1!CL:0002586;1.74e-09;3!CL:0000147;5.36e-08;14!CL:0000306;1.98e-07;4!CL:0002222;1.98e-07;4!CL:0000149;1.98e-07;4!CL:0002224;1.98e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000342,5.93e-26,1;CL:0002565,5.93e-26,1;CL:0002586,1.67e-09,3;CL:0000147,5.18e-08,14;CL:0000149,1.92e-07,4;CL:0000306,2.04e-07,4;CL:0002222,2.04e-07,4;CL:0002224,2.04e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3119;4.11e-08;14!DOID:5409;1.31e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,4.04e-08,14;DOID:5409,1.31e-07,4 | |||
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| ||
|short_description=p12@TPD52L1 | |short_description=p12@TPD52L1 | ||
}} | }} |
Latest revision as of 07:24, 20 September 2015
Short description: | p12@TPD52L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_TPD52L1_5end |
Coexpression cluster: | C42_small_lung_maxillary_pharyngeal_Mesenchymal_Wilms_colon |
Association with transcript: | -254bp_to_ENST00000524679_5end |
EntrezGene: | TPD52L1 |
HGNC: | 12006 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell (sensu Vertebrata) | 5.93e-26 | 1 |
iris pigment epithelial cell | 5.93e-26 | 1 |
retinal pigment epithelial cell | 1.67e-09 | 3 |
pigment cell | 5.18e-08 | 14 |
visual pigment cell | 1.92e-07 | 4 |
crystallin accumulating cell | 2.04e-07 | 4 |
vertebrate lens cell | 2.04e-07 | 4 |
lens epithelial cell | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
iris epithelium | 5.93e-26 | 1 |
iris | 5.93e-26 | 1 |
pigment epithelium of eye | 9.82e-21 | 11 |
camera-type eye | 9.59e-12 | 20 |
simple eye | 9.59e-12 | 20 |
immature eye | 9.59e-12 | 20 |
ocular region | 9.59e-12 | 20 |
eyeball of camera-type eye | 9.59e-12 | 20 |
optic cup | 9.59e-12 | 20 |
optic vesicle | 9.59e-12 | 20 |
eye primordium | 9.59e-12 | 20 |
eye | 3.22e-11 | 21 |
visual system | 3.22e-11 | 21 |
face | 9.70e-11 | 22 |
sense organ | 6.69e-10 | 24 |
sensory system | 6.69e-10 | 24 |
entire sense organ system | 6.69e-10 | 24 |
pigmented layer of retina | 1.67e-09 | 3 |
presumptive retinal pigmented epithelium | 1.67e-09 | 3 |
anterior segment of eyeball | 5.36e-08 | 14 |
ectodermal placode | 8.28e-08 | 31 |
rectum | 1.49e-07 | 4 |
atypical epithelium | 1.69e-07 | 4 |
layer of retina | 1.92e-07 | 4 |
cuboidal epithelium | 2.04e-07 | 4 |
transparent eye structure | 2.04e-07 | 4 |
simple cuboidal epithelium | 2.04e-07 | 4 |
cranial placode | 2.04e-07 | 4 |
lens of camera-type eye | 2.04e-07 | 4 |
epithelium of lens | 2.04e-07 | 4 |
lens placode | 2.04e-07 | 4 |
lens vesicle | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 4.04e-08 | 14 |
lung small cell carcinoma | 1.31e-07 | 4 |