FFCP PHASE1:Hg19::chr22:40441456..40441473,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23112 | |EntrezGene=23112 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29190 | |HGNC=29190 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-4bp_to_ENST00000402203_5end | |association_with_transcript=-4bp_to_ENST00000402203_5end | ||
|cluster_id=chr22:40441456..40441473,+ | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_13_at_TNRC6B_5end | |description=CAGE_peak_13_at_TNRC6B_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000784;7.15e-20;3!CL:0000037;2.38e-15;1!CL:0001024;2.38e-15;1 | |ontology_enrichment_celltype_v019=CL:0000784;7.15e-20;3!CL:0000037;2.38e-15;1!CL:0001024;2.38e-15;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000784,1.05e-19,3;CL:0001024,2.06e-15,1 | |||
|ontology_enrichment_development_v019=UBERON:0005425;9.98e-16;1!UBERON:0001045;2.38e-15;1 | |ontology_enrichment_development_v019=UBERON:0005425;9.98e-16;1!UBERON:0001045;2.38e-15;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;9.98e-16;1!UBERON:0001785;9.98e-16;1!UBERON:0002464;9.98e-16;1!UBERON:0004904;9.98e-16;1!UBERON:0001021;9.98e-16;1!UBERON:0000029;2.38e-15;1!UBERON:0001154;2.38e-15;1!UBERON:0001153;2.38e-15;1!UBERON:0009854;2.38e-15;1!UBERON:0003714;1.61e-08;2!UBERON:0005162;1.61e-08;2!UBERON:0000122;1.61e-08;2!UBERON:0000473;3.38e-08;8 | |ontology_enrichment_uberon_v019=UBERON:0000941;9.98e-16;1!UBERON:0001785;9.98e-16;1!UBERON:0002464;9.98e-16;1!UBERON:0004904;9.98e-16;1!UBERON:0001021;9.98e-16;1!UBERON:0000029;2.38e-15;1!UBERON:0001154;2.38e-15;1!UBERON:0001153;2.38e-15;1!UBERON:0009854;2.38e-15;1!UBERON:0003714;1.61e-08;2!UBERON:0005162;1.61e-08;2!UBERON:0000122;1.61e-08;2!UBERON:0000473;3.38e-08;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,7.46e-16,1;UBERON:0001785,7.46e-16,1;UBERON:0002464,7.46e-16,1;UBERON:0004904,7.46e-16,1;UBERON:0001021,7.46e-16,1;UBERON:0003902,7.46e-16,1;UBERON:0005425,7.46e-16,1;UBERON:0000029,1.78e-15,1;UBERON:0001154,3.66e-15,1;UBERON:0001153,3.66e-15,1;UBERON:0001045,3.66e-15,1;UBERON:0003714,1.39e-08,2;UBERON:0005162,1.39e-08,2;UBERON:0000122,1.39e-08,2;UBERON:0000473,3.26e-08,8 | |||
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| ||
|short_description=p13@TNRC6B | |short_description=p13@TNRC6B | ||
}} | }} |
Latest revision as of 19:45, 24 September 2015
Short description: | p13@TNRC6B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_TNRC6B_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -4bp_to_ENST00000402203_5end |
EntrezGene: | TNRC6B |
HGNC: | 29190 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 1.05e-19 | 3 |
CD34-positive, CD38-negative hematopoietic stem cell | 2.06e-15 | 1 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 7.46e-16 | 1 |
cranial nerve | 7.46e-16 | 1 |
nerve trunk | 7.46e-16 | 1 |
nerve connecting eye with brain | 7.46e-16 | 1 |
nerve | 7.46e-16 | 1 |
retinal neural layer | 7.46e-16 | 1 |
presumptive neural retina | 7.46e-16 | 1 |
lymph node | 1.78e-15 | 1 |
vermiform appendix | 3.66e-15 | 1 |
caecum | 3.66e-15 | 1 |
midgut | 3.66e-15 | 1 |
neural tissue | 1.39e-08 | 2 |
multi cell component structure | 1.39e-08 | 2 |
neuron projection bundle | 1.39e-08 | 2 |
testis | 3.26e-08 | 8 |