FFCP PHASE1:Hg19::chr1:212002822..212002856,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9926 | |EntrezGene=9926 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=28985 | |HGNC=28985 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-177bp_to_HQ447838_5end | |association_with_transcript=-177bp_to_HQ447838_5end | ||
|cluster_id=chr1:212002822..212002856,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_14_at_LPGAT1_5end | |description=CAGE_peak_14_at_LPGAT1_5end | ||
|id=chr1:212002822..212002856,- | |id=chr1:212002822..212002856,- | ||
|ontology_enrichment_celltype=CL:0000775!1.94e-08!3 | |ontology_enrichment_celltype=CL:0000775!1.94e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0000775;8.26e-20;3!CL:0000094;5.09e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000775,5.37e-20,3;CL:0000094,4.34e-08,8 | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.26e-20;3!UBERON:0000358;1.15e-15;1!UBERON:0005425;1.15e-15;1!UBERON:0009117;9.22e-07;10!UBERON:0005564;9.22e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.07e-29!57;UBERON:0005068!2.07e-29!57;UBERON:0006241!2.07e-29!57;UBERON:0007135!2.07e-29!57;UBERON:0002780!2.01e-27!41;UBERON:0001890!2.01e-27!41;UBERON:0006240!2.01e-27!41;UBERON:0003080!1.31e-26!42;UBERON:0002616!5.71e-26!59;UBERON:0007023!2.89e-25!115;UBERON:0001893!4.07e-23!34;UBERON:0002020!1.10e-22!34;UBERON:0003528!1.10e-22!34;UBERON:0000955!2.41e-22!69;UBERON:0006238!2.41e-22!69;UBERON:0002791!1.64e-21!33;UBERON:0003056!3.04e-21!61;UBERON:0003075!6.64e-21!86;UBERON:0007284!6.64e-21!86;UBERON:0000073!9.54e-21!94;UBERON:0001016!9.54e-21!94;UBERON:0005743!1.23e-20!86;UBERON:0001017!1.96e-20!82;UBERON:0001869!7.39e-20!32;UBERON:0002346!1.48e-19!90;UBERON:0002619!4.49e-16!22;UBERON:0001950!1.52e-15!20;UBERON:0000956!8.51e-14!25;UBERON:0000203!8.51e-14!25;UBERON:0000033!1.05e-11!123;UBERON:0002308!4.04e-11!9;UBERON:0000125!4.04e-11!9;UBERON:0000153!9.19e-11!129;UBERON:0007811!9.19e-11!129;UBERON:0000025!2.85e-10!194;UBERON:0002298!1.33e-09!8;UBERON:0000200!1.39e-09!6;UBERON:0004121!6.85e-09!169;UBERON:0002420!1.15e-08!9;UBERON:0007245!1.15e-08!9;UBERON:0010009!1.15e-08!9;UBERON:0010011!1.15e-08!9;UBERON:0000454!1.15e-08!9;UBERON:0000924!1.77e-08!173;UBERON:0006601!1.77e-08!173;UBERON:0009663!6.90e-08!7;UBERON:0002771!1.39e-07!3;UBERON:0001871!3.59e-07!7;UBERON:0000988!3.92e-07!3;UBERON:0006331!6.15e-07!3;UBERON:0004111!8.10e-07!241 | |ontology_enrichment_uberon=UBERON:0001049!2.07e-29!57;UBERON:0005068!2.07e-29!57;UBERON:0006241!2.07e-29!57;UBERON:0007135!2.07e-29!57;UBERON:0002780!2.01e-27!41;UBERON:0001890!2.01e-27!41;UBERON:0006240!2.01e-27!41;UBERON:0003080!1.31e-26!42;UBERON:0002616!5.71e-26!59;UBERON:0007023!2.89e-25!115;UBERON:0001893!4.07e-23!34;UBERON:0002020!1.10e-22!34;UBERON:0003528!1.10e-22!34;UBERON:0000955!2.41e-22!69;UBERON:0006238!2.41e-22!69;UBERON:0002791!1.64e-21!33;UBERON:0003056!3.04e-21!61;UBERON:0003075!6.64e-21!86;UBERON:0007284!6.64e-21!86;UBERON:0000073!9.54e-21!94;UBERON:0001016!9.54e-21!94;UBERON:0005743!1.23e-20!86;UBERON:0001017!1.96e-20!82;UBERON:0001869!7.39e-20!32;UBERON:0002346!1.48e-19!90;UBERON:0002619!4.49e-16!22;UBERON:0001950!1.52e-15!20;UBERON:0000956!8.51e-14!25;UBERON:0000203!8.51e-14!25;UBERON:0000033!1.05e-11!123;UBERON:0002308!4.04e-11!9;UBERON:0000125!4.04e-11!9;UBERON:0000153!9.19e-11!129;UBERON:0007811!9.19e-11!129;UBERON:0000025!2.85e-10!194;UBERON:0002298!1.33e-09!8;UBERON:0000200!1.39e-09!6;UBERON:0004121!6.85e-09!169;UBERON:0002420!1.15e-08!9;UBERON:0007245!1.15e-08!9;UBERON:0010009!1.15e-08!9;UBERON:0010011!1.15e-08!9;UBERON:0000454!1.15e-08!9;UBERON:0000924!1.77e-08!173;UBERON:0006601!1.77e-08!173;UBERON:0009663!6.90e-08!7;UBERON:0002771!1.39e-07!3;UBERON:0001871!3.59e-07!7;UBERON:0000988!3.92e-07!3;UBERON:0006331!6.15e-07!3;UBERON:0004111!8.10e-07!241 | ||
|ontology_enrichment_uberon_v019=UBERON:0005162;3.67e-29;2!UBERON:0000122;3.67e-29;2!UBERON:0000941;1.15e-15;1!UBERON:0001785;1.15e-15;1!UBERON:0002464;1.15e-15;1!UBERON:0004904;1.15e-15;1!UBERON:0001021;1.15e-15;1!UBERON:0002336;2.56e-15;1!UBERON:0011215;2.56e-15;1!UBERON:0001018;2.56e-15;1!UBERON:0002473;2.56e-15;1!UBERON:0005340;2.56e-15;1!UBERON:0003544;2.56e-15;1!UBERON:0005970;2.56e-15;1!UBERON:0002316;2.56e-15;1!UBERON:0001020;2.56e-15;1!UBERON:0002437;2.56e-15;1!UBERON:0001905;1.73e-08;2!UBERON:0003714;1.73e-08;2!UBERON:0002757;1.73e-08;2!UBERON:0010134;1.73e-08;2!UBERON:0005408;1.73e-08;2!UBERON:0001899;1.73e-08;2!UBERON:0000473;3.04e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005162,4.55e-29,2;UBERON:0000122,4.55e-29,2;UBERON:0000941,9.99e-16,1;UBERON:0001785,9.99e-16,1;UBERON:0002464,9.99e-16,1;UBERON:0004904,9.99e-16,1;UBERON:0001021,9.99e-16,1;UBERON:0003902,9.99e-16,1;UBERON:0005425,9.99e-16,1;UBERON:0002336,3.66e-15,1;UBERON:0011215,3.66e-15,1;UBERON:0001018,3.66e-15,1;UBERON:0002473,3.66e-15,1;UBERON:0005340,3.66e-15,1;UBERON:0003544,3.66e-15,1;UBERON:0005970,3.66e-15,1;UBERON:0002316,3.66e-15,1;UBERON:0001020,3.66e-15,1;UBERON:0002437,3.66e-15,1;UBERON:0000966,2.19e-10,6;UBERON:0005388,2.19e-10,6;UBERON:0001802,2.19e-10,6;UBERON:0003714,1.61e-08,2;UBERON:0001905,1.73e-08,2;UBERON:0002757,1.73e-08,2;UBERON:0010134,1.73e-08,2;UBERON:0005408,1.73e-08,2;UBERON:0001899,1.73e-08,2;UBERON:0000473,3.04e-08,8;UBERON:0007023,2.91e-07,114 | |||
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|short_description=p14@LPGAT1 | |short_description=p14@LPGAT1 | ||
}} | }} |
Latest revision as of 23:10, 24 September 2015
Short description: | p14@LPGAT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_LPGAT1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -177bp_to_HQ447838_5end |
EntrezGene: | LPGAT1 |
HGNC: | 28985 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neutrophil | 5.37e-20 | 3 |
granulocyte | 4.34e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
multi cell component structure | 4.55e-29 | 2 |
neuron projection bundle | 4.55e-29 | 2 |
cranial nerve II | 9.99e-16 | 1 |
cranial nerve | 9.99e-16 | 1 |
nerve trunk | 9.99e-16 | 1 |
nerve connecting eye with brain | 9.99e-16 | 1 |
nerve | 9.99e-16 | 1 |
retinal neural layer | 9.99e-16 | 1 |
presumptive neural retina | 9.99e-16 | 1 |
corpus callosum | 3.66e-15 | 1 |
central nervous system cell part cluster | 3.66e-15 | 1 |
axon tract | 3.66e-15 | 1 |
intercerebral commissure | 3.66e-15 | 1 |
dorsal telencephalic commissure | 3.66e-15 | 1 |
brain white matter | 3.66e-15 | 1 |
brain commissure | 3.66e-15 | 1 |
white matter | 3.66e-15 | 1 |
nervous system commissure | 3.66e-15 | 1 |
cerebral hemisphere white matter | 3.66e-15 | 1 |
retina | 2.19e-10 | 6 |
photoreceptor array | 2.19e-10 | 6 |
posterior segment of eyeball | 2.19e-10 | 6 |
neural tissue | 1.61e-08 | 2 |
pineal body | 1.73e-08 | 2 |
regional part of epithalamus | 1.73e-08 | 2 |
secretory circumventricular organ | 1.73e-08 | 2 |
circumventricular organ | 1.73e-08 | 2 |
epithalamus | 1.73e-08 | 2 |
testis | 3.04e-08 | 8 |
adult organism | 2.91e-07 | 114 |