FFCP PHASE1:Mm9::chr2:152223762..152223777,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20667 | |EntrezGene=20667 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q04890 | |UniProt=Q04890 | ||
|association_with_transcript=4bp_to_ENSMUST00000063332,NM_011438,uc008nfi.1_5end | |association_with_transcript=4bp_to_ENSMUST00000063332,NM_011438,uc008nfi.1_5end | ||
|cluster_id=chr2:152223762..152223777,- | |||
|description=CAGE_peak_8_at_Sox12_5end | |description=CAGE_peak_8_at_Sox12_5end | ||
|id=chr2:152223762..152223777,- | |id=chr2:152223762..152223777,- | ||
|ontology_enrichment_celltype=CL:0000117!5.62e-10!23;CL:0000337!5.62e-10!23;CL:0000540!2.50e-09!33;CL:0000047!2.50e-09!33;CL:0000031!2.50e-09!33;CL:0000404!2.50e-09!33;CL:0000393!6.12e-07!39;CL:0000211!6.12e-07!39 | |ontology_enrichment_celltype=CL:0000117!5.62e-10!23;CL:0000337!5.62e-10!23;CL:0000540!2.50e-09!33;CL:0000047!2.50e-09!33;CL:0000031!2.50e-09!33;CL:0000404!2.50e-09!33;CL:0000393!6.12e-07!39;CL:0000211!6.12e-07!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.89e-18,23;CL:0000337,2.89e-18,23;CL:0002609,3.50e-12,6;CL:0000540,2.29e-11,33;CL:0000047,2.29e-11,33;CL:0000031,2.29e-11,33;CL:0000404,2.29e-11,33;CL:0000393,5.87e-09,39;CL:0000211,5.87e-09,39;CL:0002319,9.71e-08,43;CL:0000221,1.80e-07,44;CL:0000133,1.80e-07,44;CL:0002613,4.98e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.47e-07!71;UBERON:0003075!1.47e-07!71;UBERON:0007284!1.47e-07!71;UBERON:0000468!5.16e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.39e-11,64;UBERON:0003075,1.39e-11,64;UBERON:0007284,1.39e-11,64;UBERON:0003056,1.63e-11,49;UBERON:0002020,2.34e-09,34;UBERON:0010371,2.38e-09,73;UBERON:0004121,3.47e-08,95;UBERON:0000924,3.47e-08,95;UBERON:0006601,3.47e-08,95;UBERON:0000970,3.59e-08,9;UBERON:0000019,3.59e-08,9;UBERON:0000047,3.59e-08,9;UBERON:0010312,3.59e-08,9;UBERON:0004088,3.59e-08,9;UBERON:0002104,3.59e-08,9;UBERON:0001456,3.59e-08,9;UBERON:0003072,3.59e-08,9;UBERON:0004128,3.59e-08,9;UBERON:0003071,3.59e-08,9;UBERON:0001049,2.19e-07,52;UBERON:0005068,2.19e-07,52;UBERON:0006241,2.19e-07,52;UBERON:0007135,2.19e-07,52;UBERON:0000073,6.03e-07,54;UBERON:0000369,7.24e-07,5;UBERON:0002435,7.24e-07,5;UBERON:0000204,7.24e-07,5;UBERON:0010082,7.24e-07,5;UBERON:0010314,8.25e-07,92 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0.782391344348039,0,0,0,0,0,0,0,0,0.257259436035947,0,0,3.84401275633236,4.23192783417626,6.33831403506179,0,0,0,0,0,0.299600110518405,0.768436610643109,4.66603255388149,7.1553147315796,6.94072372459561,1.14260393761521,1.10434270475807,4.89963196859816,4.31304619582064,4.5960939330501,0,0.127687338085188,0.307213066512487,6.4624280987795,5.30628332893976,5.2091337055676,0,0.56276261003168,0.30559649555362,0.589257170947335,1.85083185038834,4.65998614563251,0,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.867426633830679,0.913396434936424,0.461230994512117,0.301445281105245,0.470354828542819,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.149790639404823,0,3.76963056338593,0,0.767146371990992,0,0.811206315338788,0.712875546952214,0.124406970610093,0,0,1.95180664444056,1.37941262660084,1.0803727788321,1.80845781402858,1.29269348387523,1.66547836370305,1.21812241927647,0,2.80238390812695,3.21480336285293,2.28736461413134,1.09597866213787,0.556094498451196,0,0,1.19420560091096,0,0,0,0.828503090142008,1.17263029990548,0.900310307305074,0.473489471170421,0.983821158737019,0.925602677324269,0.232533944750408,0.536546802799238,0.233530684734339,0,0.32833492815819,0.162137619091711,0,0,0.134206418760372,0.210289948564127,5.14523061896422,0,0,1.70630600428187,0.696710015581316,0.644337306610467,0.605050573870028,0.22237804384487,0,0,0.164698954724011,0,0,0,0,0,0,0.758671603812327,1.02823661348756,0,1.01825663922657,0.193952487167626,0.280543279561274,0.0632365371242573,0.147610147979602,0.156998727841375,0.123397163921801,0,0.83422552858047,0.196558995113203,0,0,0,0,0,0.162135226775035,0,0,0,0.312037673114561,0.252578877947112,0,0.482443521363367,0,1.13694847062291,0.977789858652155,0.509235257325564,0.469380496577004,0.502518772325447,0,0.195133647857799,0.157635144106191,0.44292937929755,0.159454768657487,0,0.172684981865896,0.144649058581512,0,0,0,0,0.321101179975584,0,0.655739781506702,0,0.315508219416257,0.390438744296638,0,0.955875191810208,0.222798674082394,0.566153061577665,0,0.292255857911312,0.790575555893047,0.321321316421807,0.141940085208269,0.534196811001766,0.81443479676788,0.329940245945071,0,0.728341908464944,0.302323556964751,0,0.590603785761546,0.614870295887855,0.258428293168221,0,0.356497378384721,0.316036757935816,0,0,0,1.26042765821917,1.4229455216103,1.71469628025274,0.354680467284547,0.891844088010353,0.658196082408484,0.608929898229199,0,0,0,0,0,0.120625849856312,0.119372344003136,0,0.291480836629851,0.18542530201051,0.170870880797853,0.619160603889667,0,0.188368457004691,0,0,0,0,0.138199973804424,0,2.84702394223022,1.01659733563424,0.540026704109006,0.418176592028937,0.218362563746178,0.404593039154462,0.0826534557253359,0,0,0,0,1.19613236835183,0.66183396182839,0.777804753376191,1.29159823477731,1.520605129417,0.58678619322877,0.39061315453185,0.314578033277133,0,0,0,0.202725215290164,0,0.25984164595559,0,0.198681354781265,0,0.295379054349154,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0.36630324853453,0,0,0,0,0,0.171853182343688,0.685082519770642,0,0,0,0.453142408984205,0.51776031175182,1.86817225651518,3.19219898720825,1.70733605754134,1.21553358534147,0.838452650511929,0.551530525350042,1.11123363900808,0.412070114477788,1.28367683836726,0.505394423527595,0.50695859978048,0.943131706930381,0.936415074698824,0.512201219238954,0.976402972245426,0.476293691283074,1.39061191133827,1.15745532278223,0.824171801606613,0.883193520806384,1.02860775715625,0.354951612318675,0,0.581385666529314,0.752875043322645,0.592302255241736,0.365855945745545,0.789209134313529,0.407412341537585,0.561142271657738,0.593175090620871,0.985044823755635,0.409231043169689,0.464810523557898,0.578719832943424,2.74791635731741,1.16965804222704,0.214871054048298,0,0.220591419119515,0 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|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0.782391344348039,0,0,0,0,0,0,0,0,0.257259436035947,0,0,3.84401275633236,4.23192783417626,6.33831403506179,0,0,0,0,0,0.299600110518405,0.768436610643109,4.66603255388149,7.1553147315796,6.94072372459561,1.14260393761521,1.10434270475807,4.89963196859816,4.31304619582064,4.5960939330501,0,0.127687338085188,0.307213066512487,6.4624280987795,5.30628332893976,5.2091337055676,0,0.56276261003168,0.30559649555362,0.589257170947335,1.85083185038834,4.65998614563251,0,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.867426633830679,0.913396434936424,0.461230994512117,0.301445281105245,0.470354828542819,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.149790639404823,0,3.76963056338593,0,0.767146371990992,0,0.811206315338788,0.712875546952214,0.124406970610093,0,0,1.95180664444056,1.37941262660084,1.0803727788321,1.80845781402858,1.29269348387523,1.66547836370305,1.21812241927647,0,2.80238390812695,3.21480336285293,2.28736461413134,1.09597866213787,0.556094498451196,0,0,1.19420560091096,0,0,0,0.828503090142008,1.17263029990548,0.900310307305074,0.473489471170421,0.983821158737019,0.925602677324269,0.232533944750408,0.536546802799238,0.233530684734339,0,0.32833492815819,0.162137619091711,0,0,0.134206418760372,0.210289948564127,5.14523061896422,0,0,1.70630600428187,0.696710015581316,0.644337306610467,0.605050573870028,0.22237804384487,0,0,0.164698954724011,0,0,0,0,0,0,0.758671603812327,1.02823661348756,0,1.01825663922657,0.193952487167626,0.280543279561274,0.0632365371242573,0.147610147979602,0.156998727841375,0.123397163921801,0,0.83422552858047,0.196558995113203,0,0,0,0,0,0.162135226775035,0,0,0,0.312037673114561,0.252578877947112,0,0.482443521363367,0,1.13694847062291,0.977789858652155,0.509235257325564,0.469380496577004,0.502518772325447,0,0.195133647857799,0.157635144106191,0.44292937929755,0.159454768657487,0,0.172684981865896,0.144649058581512,0,0,0,0,0.321101179975584,0,0.655739781506702,0,0.315508219416257,0.390438744296638,0,0.955875191810208,0.222798674082394,0.566153061577665,0,0.292255857911312,0.790575555893047,0.321321316421807,0.141940085208269,0.534196811001766,0.81443479676788,0.329940245945071,0,0.728341908464944,0.302323556964751,0,0.590603785761546,0.614870295887855,0.258428293168221,0,0.356497378384721,0.316036757935816,0,0,0,1.26042765821917,1.4229455216103,1.71469628025274,0.354680467284547,0.891844088010353,0.658196082408484,0.608929898229199,0,0,0,0,0,0.120625849856312,0.119372344003136,0,0.291480836629851,0.18542530201051,0.170870880797853,0.619160603889667,0,0.188368457004691,0,0,0,0,0.138199973804424,0,2.84702394223022,1.01659733563424,0.540026704109006,0.418176592028937,0.218362563746178,0.404593039154462,0.0826534557253359,0,0,0,0,1.19613236835183,0.66183396182839,0.777804753376191,1.29159823477731,1.520605129417,0.58678619322877,0.39061315453185,0.314578033277133,0,0,0,0.202725215290164,0,0.25984164595559,0,0.198681354781265,0,0.295379054349154,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0.36630324853453,0,0,0,0,0,0.171853182343688,0.685082519770642,0,0,0,0.453142408984205,0.51776031175182,1.86817225651518,3.19219898720825,1.70733605754134,1.21553358534147,0.838452650511929,0.551530525350042,1.11123363900808,0.412070114477788,1.28367683836726,0.505394423527595,0.50695859978048,0.943131706930381,0.936415074698824,0.512201219238954,0.976402972245426,0.476293691283074,1.39061191133827,1.15745532278223,0.824171801606613,0.883193520806384,1.02860775715625,0.354951612318675,0,0.581385666529314,0.752875043322645,0.592302255241736,0.365855945745545,0.789209134313529,0.407412341537585,0.561142271657738,0.593175090620871,0.985044823755635,0.409231043169689,0.464810523557898,0.578719832943424,2.74791635731741,1.16965804222704,0.214871054048298,0,0.220591419119515,0 | ||
|short_description=p8@Sox12 | |short_description=p8@Sox12 | ||
}} | }} |
Latest revision as of 22:03, 25 September 2015
Short description: | p8@Sox12 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Sox12_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 4bp_to_ENSMUST00000063332, NM_011438, uc008nfi.1_5end |
EntrezGene: | Sox12 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.89e-18 | 23 |
neuroblast (sensu Vertebrata) | 2.89e-18 | 23 |
neuron of cerebral cortex | 3.50e-12 | 6 |
neuron | 2.29e-11 | 33 |
neuronal stem cell | 2.29e-11 | 33 |
neuroblast | 2.29e-11 | 33 |
electrically signaling cell | 2.29e-11 | 33 |
electrically responsive cell | 5.87e-09 | 39 |
electrically active cell | 5.87e-09 | 39 |
neural cell | 9.71e-08 | 43 |
ectodermal cell | 1.80e-07 | 44 |
neurectodermal cell | 1.80e-07 | 44 |
striatum neuron | 4.98e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.39e-11 | 64 |
neural plate | 1.39e-11 | 64 |
presumptive neural plate | 1.39e-11 | 64 |
pre-chordal neural plate | 1.63e-11 | 49 |
gray matter | 2.34e-09 | 34 |
ecto-epithelium | 2.38e-09 | 73 |
ectoderm-derived structure | 3.47e-08 | 95 |
ectoderm | 3.47e-08 | 95 |
presumptive ectoderm | 3.47e-08 | 95 |
eye | 3.59e-08 | 9 |
camera-type eye | 3.59e-08 | 9 |
simple eye | 3.59e-08 | 9 |
immature eye | 3.59e-08 | 9 |
ocular region | 3.59e-08 | 9 |
visual system | 3.59e-08 | 9 |
face | 3.59e-08 | 9 |
optic cup | 3.59e-08 | 9 |
optic vesicle | 3.59e-08 | 9 |
eye primordium | 3.59e-08 | 9 |
neural tube | 2.19e-07 | 52 |
neural rod | 2.19e-07 | 52 |
future spinal cord | 2.19e-07 | 52 |
neural keel | 2.19e-07 | 52 |
regional part of nervous system | 6.03e-07 | 54 |
corpus striatum | 7.24e-07 | 5 |
striatum | 7.24e-07 | 5 |
ventral part of telencephalon | 7.24e-07 | 5 |
future corpus striatum | 7.24e-07 | 5 |
structure with developmental contribution from neural crest | 8.25e-07 | 92 |