FFCP PHASE1:Mm9::chrX:38753982..38754010,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:38753982..38754010,+
|short_description=p4@Gria3
|description=CAGE_peak_4_at_Gria3_5end
|association_with_transcript=-20bp_to_ENSMUST00000128197,uc009taj.1...") |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=53623 | |EntrezGene=53623 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q3TTV2 | |UniProt=Q3TTV2 | ||
|association_with_transcript=-20bp_to_ENSMUST00000128197,uc009taj.1_5end | |||
|cluster_id=chrX:38753982..38754010,+ | |||
|description=CAGE_peak_4_at_Gria3_5end | |||
|id=chrX:38753982..38754010,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.66e-18!73;UBERON:0005743!5.66e-18!73;UBERON:0000073!1.77e-16!75;UBERON:0001016!1.77e-16!75;UBERON:0004121!4.90e-15!102;UBERON:0000924!4.90e-15!102;UBERON:0006601!4.90e-15!102;UBERON:0002346!5.03e-13!71;UBERON:0003075!5.03e-13!71;UBERON:0007284!5.03e-13!71;UBERON:0001049!7.64e-13!52;UBERON:0005068!7.64e-13!52;UBERON:0006241!7.64e-13!52;UBERON:0007135!7.64e-13!52;UBERON:0000955!3.39e-12!50;UBERON:0006238!3.39e-12!50;UBERON:0002616!1.03e-11!49;UBERON:0002020!1.47e-10!34;UBERON:0000033!1.72e-10!63;UBERON:0000475!2.38e-09!200;UBERON:0004111!4.10e-09!122;UBERON:0000025!4.36e-09!114;UBERON:0002791!1.46e-08!29;UBERON:0003528!1.46e-08!29;UBERON:0001893!1.46e-08!29;UBERON:0002619!5.49e-08!17;UBERON:0002021!5.59e-08!10;UBERON:0000411!5.59e-08!10;UBERON:0001950!5.59e-08!10;UBERON:0003080!7.13e-08!40;UBERON:0002780!1.99e-07!39;UBERON:0001890!1.99e-07!39;UBERON:0006240!1.99e-07!39;UBERON:0000956!2.00e-07!21;UBERON:0001869!2.00e-07!21;UBERON:0000203!2.00e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.02e-17,73;UBERON:0001016,1.12e-16,75;UBERON:0000073,1.52e-13,54;UBERON:0001049,1.96e-12,52;UBERON:0005068,1.96e-12,52;UBERON:0006241,1.96e-12,52;UBERON:0007135,1.96e-12,52;UBERON:0004121,7.15e-12,95;UBERON:0000924,7.15e-12,95;UBERON:0006601,7.15e-12,95;UBERON:0002346,1.12e-10,64;UBERON:0003075,1.12e-10,64;UBERON:0007284,1.12e-10,64;UBERON:0002020,1.50e-10,34;UBERON:0000955,5.52e-10,47;UBERON:0006238,5.52e-10,47;UBERON:0002021,7.37e-10,10;UBERON:0000411,7.37e-10,10;UBERON:0001950,7.37e-10,10;UBERON:0002616,1.89e-09,46;UBERON:0010371,8.75e-09,73;UBERON:0002619,9.10e-09,17;UBERON:0003528,3.90e-08,29;UBERON:0002791,3.90e-08,29;UBERON:0001893,3.90e-08,29;UBERON:0003076,5.01e-08,12;UBERON:0003057,5.01e-08,12;UBERON:0000956,2.56e-07,21;UBERON:0001869,2.56e-07,21;UBERON:0000203,2.56e-07,21;UBERON:0000025,4.47e-07,114;UBERON:0004111,9.17e-07,122 | |||
|phase1_expression=1.60148847104794,0,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0,0,0,0,0.157731082679119,0,0,1.36069264241712,0.297872853602656,1.04479915655574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.7813353445238,0.523523743973798,0,0,0,6.29484089877886,4.56196190487815,2.0190142737785,1.56478268869608,1.52617609466313,1.5378032791413,3.30530828426282,0.979904951377538,1.43752564364972,0,0.725362142011344,1.00828139742739,0,0.573066879877513,0.515672092277442,1.41621522601718,1.05798195854407,1.90149421051854,0.338844532069132,0,0,0,0,0.299600110518405,1.53687322128622,0.518448061542388,0.810035629990144,0.630974884054146,1.99955689082663,2.42955395046775,0.61245399607477,0.479227355091182,0.919218786610021,2.20231761998777,5.61824287574826,6.45147439676223,0.923204014111357,0.365950574409639,1.56274011167028,5.58365998002762,2.25105044012672,4.12555268997387,3.24091444021034,3.13217697758026,1.67759501242771,0,0.151143120213571,0.869593466105033,0.860423876981386,0,2.15881276655127,0,0.896053774194671,0.561777680527007,1.87473354835864,1.55871602761721,2.12003744706204,0.985903938436763,2.56652954828636,0,0,0.216491041011214,0.253359865475099,0.505524445014783,1.94112595522402,0.517875767294343,7.27366481417641,0.346970653532272,1.82679286987285,0.922461989024234,1.50722640552623,2.11659672844269,3.76999773989026,0.741584903203122,0.578397427679647,0,0.485300549842228,0.441683036920787,0.484875253135222,0,5.5628351432194,4.81727425670947,0.255457055208591,1.67741174308288,0.599902730993408,1.39777249780371,5.39246301857362,6.8625090422794,0.628271760564322,13.7321212951898,10.4843337505436,4.77912502486988,6.65189178577806,1.01839363850316,1.61729061793121,0.252722758433675,0.631325567659422,0.260240885925407,0.459804208866946,0.360124259610698,0.90422890701429,0.340182495756639,1.15302348256365,1.3118241438362,1.03481348295606,0,0.945530400839096,0.879755620819744,0.657587197282725,0.278047249225598,0.696504333044333,0.411564272815887,1.39323986772945,0.702213187313235,1.54408744268829,2.27330799516474,0.414251545071004,0.234526059981096,0.720248245844059,0.473489471170421,0,0.925602677324269,0.697601834251224,0,0.350296027101508,0,0.164167464079095,0.162137619091711,0,0.219550115291051,0.402619256281115,12.4071069652835,2.26390147234426,0,0,0.853153002140936,0.232236671860439,0.644337306610467,1.00841762311671,0.667134131534611,0.570676878337677,0.474529061544512,0.164698954724011,0.251335208800269,0.994782360205754,0,0,0.216138049874694,0.398282546508734,0.948339504765408,1.14248512609729,1.1270773567308,0.814605311381257,0.193952487167626,0.701358198903186,1.07502113111237,1.03327103585722,1.72698600625512,1.1105744752962,0.592905254174298,0.333690211432188,0.589676985339609,0.674586337154561,0.202860121388503,0.482354319504834,1.2731292589071,1.43848068725405,0.972811360650212,0.823684239564244,12.9391385874619,2.60498663367952,2.80833905803104,2.27320990152401,2.69096120282868,1.92977408545347,1.84753190166605,0.37898282354097,0.977789858652155,0.509235257325564,0.938760993154008,1.00503754465089,1.6663054862021,0.975668239288994,0.788175720530955,1.99318220683897,1.11618338060241,2.62181303545181,0.518054945597687,1.73578870297814,0,0,0,0.827810238914197,7.86697890940181,5.50894926983355,0.327869890753351,1.00988370881749,1.26203287766503,1.17131623288992,1.29254038639679,0.955875191810208,1.78238939265915,1.69845918473299,1.21443210502468,2.04579100537918,3.55759000151871,3.85585579706168,0.851640511249612,2.67098405500883,1.30309567482861,1.48473110675282,2.65490276679926,1.21390318077491,0.604647113929502,0.565815239267694,1.47650946440386,1.84461088766356,1.29214146584111,1.45413491791002,1.06949213515416,5.05658812697306,7.37930260024991,8.25084345985495,0.340439605753788,0.540183282093931,0,0.857348140126369,0.532020700926821,0.891844088010353,0.822745103010605,1.2178597964584,0.23467170806371,0,0.661585194164886,1.6488625294148,0.807322133479528,0.241251699712623,0.835606408021955,0.492422699235184,1.45740418314925,7.04616147639937,0.170870880797853,0.82554747185289,0.740778109478847,0.188368457004691,0,0.228778173206523,0.509935289981566,0.69975726161829,0.552799895217695,0,0.790839983952838,1.82987520414164,0.432021363287205,0.418176592028937,0.218362563746178,0.674321731924103,0.826534557253359,0.523511883968059,0.90730481304255,2.4853572523477,0.56369293868419,0.299033092087958,0.66183396182839,0.583353565032143,0.258319646955462,0.675824501963113,1.29092962510329,0.651021924219751,1.15345278868282,0.241584120826006,0.864090018773596,0,1.01362607645082,0.924398614483445,1.03936658382236,1.43221356533985,0.39736270956253,0.360586348559907,0.443068581523732,0.302899349844443,0.15241361331,0.100826185136841,0.292373642219257,0.384847366561318,0.116876902181569,0,0,0,0,1.15913756419314,1.50145980360946,1.28206136987086,0.643105137237198,0.501572104035363,8.471277639256,11.9684561491866,7.44764167471216,17.8727309637435,8.90607275701835,7.55393897389701,8.77529250301348,10.8077088773813,10.4222754066367,9.31968561153276,0,1.59609949360412,1.36586884603307,0.486213434136588,0.419226325255965,0.183843508450014,1.77797382241292,0.824140228955577,1.92551525755089,0.758091635291392,0.25347929989024,1.50901073108861,1.49826411951812,1.21647789569252,1.37845125493472,1.90517476513229,0.927074607558844,0.77163688185482,1.64834360321323,0.735994600671987,0.685738504770831,0.532427418478012,0.476872379894642,1.74415699958794,0.941093804153306,1.18460451048347,1.09756783723664,0.789209134313529,1.08643291076689,0,1.42362021749009,0.689531376628944,1.22769312950907,1.39443157067369,1.35034627686799,0.499621155875892,0.935726433781634,1.07435527024149,0,0.661774257358546,0.463735671240843 | |phase1_expression=1.60148847104794,0,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0,0,0,0,0.157731082679119,0,0,1.36069264241712,0.297872853602656,1.04479915655574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.7813353445238,0.523523743973798,0,0,0,6.29484089877886,4.56196190487815,2.0190142737785,1.56478268869608,1.52617609466313,1.5378032791413,3.30530828426282,0.979904951377538,1.43752564364972,0,0.725362142011344,1.00828139742739,0,0.573066879877513,0.515672092277442,1.41621522601718,1.05798195854407,1.90149421051854,0.338844532069132,0,0,0,0,0.299600110518405,1.53687322128622,0.518448061542388,0.810035629990144,0.630974884054146,1.99955689082663,2.42955395046775,0.61245399607477,0.479227355091182,0.919218786610021,2.20231761998777,5.61824287574826,6.45147439676223,0.923204014111357,0.365950574409639,1.56274011167028,5.58365998002762,2.25105044012672,4.12555268997387,3.24091444021034,3.13217697758026,1.67759501242771,0,0.151143120213571,0.869593466105033,0.860423876981386,0,2.15881276655127,0,0.896053774194671,0.561777680527007,1.87473354835864,1.55871602761721,2.12003744706204,0.985903938436763,2.56652954828636,0,0,0.216491041011214,0.253359865475099,0.505524445014783,1.94112595522402,0.517875767294343,7.27366481417641,0.346970653532272,1.82679286987285,0.922461989024234,1.50722640552623,2.11659672844269,3.76999773989026,0.741584903203122,0.578397427679647,0,0.485300549842228,0.441683036920787,0.484875253135222,0,5.5628351432194,4.81727425670947,0.255457055208591,1.67741174308288,0.599902730993408,1.39777249780371,5.39246301857362,6.8625090422794,0.628271760564322,13.7321212951898,10.4843337505436,4.77912502486988,6.65189178577806,1.01839363850316,1.61729061793121,0.252722758433675,0.631325567659422,0.260240885925407,0.459804208866946,0.360124259610698,0.90422890701429,0.340182495756639,1.15302348256365,1.3118241438362,1.03481348295606,0,0.945530400839096,0.879755620819744,0.657587197282725,0.278047249225598,0.696504333044333,0.411564272815887,1.39323986772945,0.702213187313235,1.54408744268829,2.27330799516474,0.414251545071004,0.234526059981096,0.720248245844059,0.473489471170421,0,0.925602677324269,0.697601834251224,0,0.350296027101508,0,0.164167464079095,0.162137619091711,0,0.219550115291051,0.402619256281115,12.4071069652835,2.26390147234426,0,0,0.853153002140936,0.232236671860439,0.644337306610467,1.00841762311671,0.667134131534611,0.570676878337677,0.474529061544512,0.164698954724011,0.251335208800269,0.994782360205754,0,0,0.216138049874694,0.398282546508734,0.948339504765408,1.14248512609729,1.1270773567308,0.814605311381257,0.193952487167626,0.701358198903186,1.07502113111237,1.03327103585722,1.72698600625512,1.1105744752962,0.592905254174298,0.333690211432188,0.589676985339609,0.674586337154561,0.202860121388503,0.482354319504834,1.2731292589071,1.43848068725405,0.972811360650212,0.823684239564244,12.9391385874619,2.60498663367952,2.80833905803104,2.27320990152401,2.69096120282868,1.92977408545347,1.84753190166605,0.37898282354097,0.977789858652155,0.509235257325564,0.938760993154008,1.00503754465089,1.6663054862021,0.975668239288994,0.788175720530955,1.99318220683897,1.11618338060241,2.62181303545181,0.518054945597687,1.73578870297814,0,0,0,0.827810238914197,7.86697890940181,5.50894926983355,0.327869890753351,1.00988370881749,1.26203287766503,1.17131623288992,1.29254038639679,0.955875191810208,1.78238939265915,1.69845918473299,1.21443210502468,2.04579100537918,3.55759000151871,3.85585579706168,0.851640511249612,2.67098405500883,1.30309567482861,1.48473110675282,2.65490276679926,1.21390318077491,0.604647113929502,0.565815239267694,1.47650946440386,1.84461088766356,1.29214146584111,1.45413491791002,1.06949213515416,5.05658812697306,7.37930260024991,8.25084345985495,0.340439605753788,0.540183282093931,0,0.857348140126369,0.532020700926821,0.891844088010353,0.822745103010605,1.2178597964584,0.23467170806371,0,0.661585194164886,1.6488625294148,0.807322133479528,0.241251699712623,0.835606408021955,0.492422699235184,1.45740418314925,7.04616147639937,0.170870880797853,0.82554747185289,0.740778109478847,0.188368457004691,0,0.228778173206523,0.509935289981566,0.69975726161829,0.552799895217695,0,0.790839983952838,1.82987520414164,0.432021363287205,0.418176592028937,0.218362563746178,0.674321731924103,0.826534557253359,0.523511883968059,0.90730481304255,2.4853572523477,0.56369293868419,0.299033092087958,0.66183396182839,0.583353565032143,0.258319646955462,0.675824501963113,1.29092962510329,0.651021924219751,1.15345278868282,0.241584120826006,0.864090018773596,0,1.01362607645082,0.924398614483445,1.03936658382236,1.43221356533985,0.39736270956253,0.360586348559907,0.443068581523732,0.302899349844443,0.15241361331,0.100826185136841,0.292373642219257,0.384847366561318,0.116876902181569,0,0,0,0,1.15913756419314,1.50145980360946,1.28206136987086,0.643105137237198,0.501572104035363,8.471277639256,11.9684561491866,7.44764167471216,17.8727309637435,8.90607275701835,7.55393897389701,8.77529250301348,10.8077088773813,10.4222754066367,9.31968561153276,0,1.59609949360412,1.36586884603307,0.486213434136588,0.419226325255965,0.183843508450014,1.77797382241292,0.824140228955577,1.92551525755089,0.758091635291392,0.25347929989024,1.50901073108861,1.49826411951812,1.21647789569252,1.37845125493472,1.90517476513229,0.927074607558844,0.77163688185482,1.64834360321323,0.735994600671987,0.685738504770831,0.532427418478012,0.476872379894642,1.74415699958794,0.941093804153306,1.18460451048347,1.09756783723664,0.789209134313529,1.08643291076689,0,1.42362021749009,0.689531376628944,1.22769312950907,1.39443157067369,1.35034627686799,0.499621155875892,0.935726433781634,1.07435527024149,0,0.661774257358546,0.463735671240843 | ||
|short_description=p4@Gria3 | |||
}} | }} |
Latest revision as of 20:32, 1 October 2015
Short description: | p4@Gria3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Gria3_5end |
Coexpression cluster: | NA |
Association with transcript: | -20bp_to_ENSMUST00000128197, uc009taj.1_5end |
EntrezGene: | Gria3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.02e-17 | 73 |
nervous system | 1.12e-16 | 75 |
regional part of nervous system | 1.52e-13 | 54 |
neural tube | 1.96e-12 | 52 |
neural rod | 1.96e-12 | 52 |
future spinal cord | 1.96e-12 | 52 |
neural keel | 1.96e-12 | 52 |
ectoderm-derived structure | 7.15e-12 | 95 |
ectoderm | 7.15e-12 | 95 |
presumptive ectoderm | 7.15e-12 | 95 |
neurectoderm | 1.12e-10 | 64 |
neural plate | 1.12e-10 | 64 |
presumptive neural plate | 1.12e-10 | 64 |
gray matter | 1.50e-10 | 34 |
brain | 5.52e-10 | 47 |
future brain | 5.52e-10 | 47 |
occipital lobe | 7.37e-10 | 10 |
visual cortex | 7.37e-10 | 10 |
neocortex | 7.37e-10 | 10 |
regional part of brain | 1.89e-09 | 46 |
ecto-epithelium | 8.75e-09 | 73 |
regional part of cerebral cortex | 9.10e-09 | 17 |
brain grey matter | 3.90e-08 | 29 |
regional part of telencephalon | 3.90e-08 | 29 |
telencephalon | 3.90e-08 | 29 |
posterior neural tube | 5.01e-08 | 12 |
chordal neural plate | 5.01e-08 | 12 |
cerebral cortex | 2.56e-07 | 21 |
cerebral hemisphere | 2.56e-07 | 21 |
pallium | 2.56e-07 | 21 |
tube | 4.47e-07 | 114 |
anatomical conduit | 9.17e-07 | 122 |