FF:10013-101C4: Difference between revisions

Latest revision as of 12:13, 3 June 2020

Name:	cervix, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10618
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cervix
dev stage	40,46,57,65 years old adult
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -4
catalog number	Cat:AM6000 Lot:0910061 -4
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004902

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10618		CAGE		DRX008636		DRR009508

Accession ID Hg19

Library id		BAM		CTSS
CNhs10618		DRZ000933		DRZ002318

Accession ID Hg38

Library id		BAM		CTSS
CNhs10618		DRZ012283		DRZ013668

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.103
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.252
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.0902
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0322
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0288
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.369
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0322
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.208
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0754
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.248
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.0322
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.044
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.117
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0322
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0.0322
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0.0622
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.257
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.162
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0.0322
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.0902
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.706
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0526
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0322
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.378
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0902
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.00232
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0902
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0.642
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.308
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0902
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.226
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.301
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0.198
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.576
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0322
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0322
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.00589
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.117
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.0322
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0322
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0322
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0322
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.491
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0622
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.165
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.284
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.317
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.187
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0322
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.301
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.418
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.117
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.266
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0.248
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0622
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0193
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0289
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0.0322
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.0322
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10618

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00264
MA0003.1	MA0003.1	0.381
MA0004.1	MA0004.1	0.0267
MA0006.1	MA0006.1	0.486
MA0007.1	MA0007.1	0.446
MA0009.1	MA0009.1	0.61
MA0014.1	MA0014.1	0.371
MA0017.1	MA0017.1	0.0518
MA0018.2	MA0018.2	0.0824
MA0019.1	MA0019.1	0.42
MA0024.1	MA0024.1	0.194
MA0025.1	MA0025.1	0.625
MA0027.1	MA0027.1	0.595
MA0028.1	MA0028.1	1.01315e-4
MA0029.1	MA0029.1	0.138
MA0030.1	MA0030.1	0.0066
MA0031.1	MA0031.1	0.0527
MA0035.2	MA0035.2	0.0728
MA0038.1	MA0038.1	0.874
MA0039.2	MA0039.2	0.937
MA0040.1	MA0040.1	0.698
MA0041.1	MA0041.1	0.858
MA0042.1	MA0042.1	0.675
MA0043.1	MA0043.1	0.0637
MA0046.1	MA0046.1	0.316
MA0047.2	MA0047.2	0.382
MA0048.1	MA0048.1	0.205
MA0050.1	MA0050.1	0.997
MA0051.1	MA0051.1	0.585
MA0052.1	MA0052.1	0.0168
MA0055.1	MA0055.1	0.00122
MA0057.1	MA0057.1	0.949
MA0058.1	MA0058.1	0.00854
MA0059.1	MA0059.1	6.82312e-4
MA0060.1	MA0060.1	0.0105
MA0061.1	MA0061.1	0.00121
MA0062.2	MA0062.2	1.85327e-7
MA0065.2	MA0065.2	0.0054
MA0066.1	MA0066.1	0.127
MA0067.1	MA0067.1	0.0565
MA0068.1	MA0068.1	7.83677e-5
MA0069.1	MA0069.1	0.861
MA0070.1	MA0070.1	0.242
MA0071.1	MA0071.1	0.073
MA0072.1	MA0072.1	0.157
MA0073.1	MA0073.1	0.63
MA0074.1	MA0074.1	0.989
MA0076.1	MA0076.1	5.48922e-5
MA0077.1	MA0077.1	0.778
MA0078.1	MA0078.1	0.168
MA0079.2	MA0079.2	0.321
MA0080.2	MA0080.2	0.00272
MA0081.1	MA0081.1	0.0659
MA0083.1	MA0083.1	4.64471e-4
MA0084.1	MA0084.1	0.91
MA0087.1	MA0087.1	0.158
MA0088.1	MA0088.1	0.023
MA0090.1	MA0090.1	0.12
MA0091.1	MA0091.1	0.656
MA0092.1	MA0092.1	0.99
MA0093.1	MA0093.1	0.0292
MA0099.2	MA0099.2	4.178e-11
MA0100.1	MA0100.1	0.0873
MA0101.1	MA0101.1	0.00249
MA0102.2	MA0102.2	0.829
MA0103.1	MA0103.1	0.399
MA0104.2	MA0104.2	4.84691e-4
MA0105.1	MA0105.1	2.34383e-6
MA0106.1	MA0106.1	0.112
MA0107.1	MA0107.1	0.00627
MA0108.2	MA0108.2	3.85172e-13
MA0111.1	MA0111.1	0.559
MA0112.2	MA0112.2	0.155
MA0113.1	MA0113.1	0.539
MA0114.1	MA0114.1	0.00886
MA0115.1	MA0115.1	0.0119
MA0116.1	MA0116.1	4.63139e-4
MA0117.1	MA0117.1	0.341
MA0119.1	MA0119.1	0.312
MA0122.1	MA0122.1	0.597
MA0124.1	MA0124.1	0.84
MA0125.1	MA0125.1	0.285
MA0131.1	MA0131.1	0.295
MA0135.1	MA0135.1	0.414
MA0136.1	MA0136.1	1.81828e-4
MA0137.2	MA0137.2	0.855
MA0138.2	MA0138.2	0.615
MA0139.1	MA0139.1	0.226
MA0140.1	MA0140.1	0.0119
MA0141.1	MA0141.1	0.00445
MA0142.1	MA0142.1	0.143
MA0143.1	MA0143.1	0.865
MA0144.1	MA0144.1	0.988
MA0145.1	MA0145.1	0.276
MA0146.1	MA0146.1	0.402
MA0147.1	MA0147.1	2.2197e-4
MA0148.1	MA0148.1	0.83
MA0149.1	MA0149.1	0.0142
MA0150.1	MA0150.1	7.45314e-6
MA0152.1	MA0152.1	0.225
MA0153.1	MA0153.1	0.0619
MA0154.1	MA0154.1	0.0535
MA0155.1	MA0155.1	0.692
MA0156.1	MA0156.1	1.41917e-4
MA0157.1	MA0157.1	0.672
MA0159.1	MA0159.1	0.0606
MA0160.1	MA0160.1	0.0101
MA0162.1	MA0162.1	0.712
MA0163.1	MA0163.1	9.09154e-9
MA0164.1	MA0164.1	0.218
MA0258.1	MA0258.1	0.19
MA0259.1	MA0259.1	0.0431

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10618

Novel motif	Logo	P-value
1	1	0.0123
10	10	0.0322
100	100	0.0886
101	101	0.916
102	102	0.382
103	103	0.108
104	104	0.595
105	105	0.804
106	106	0.633
107	107	0.36
108	108	0.979
109	109	0.0121
11	11	0.0494
110	110	0.171
111	111	0.00282
112	112	0.944
113	113	0.143
114	114	0.00295
115	115	0.436
116	116	0.74
117	117	0.0189
118	118	0.0495
119	119	0.291
12	12	0.482
120	120	0.0828
121	121	0.733
122	122	0.89
123	123	0.0611
124	124	0.766
125	125	0.178
126	126	0.768
127	127	0.226
128	128	0.949
129	129	0.349
13	13	0.0532
130	130	0.664
131	131	0.289
132	132	0.0685
133	133	0.0049
134	134	0.11
135	135	0.352
136	136	0.347
137	137	0.336
138	138	0.558
139	139	0.311
14	14	0.823
140	140	0.212
141	141	0.765
142	142	0.678
143	143	0.00809
144	144	0.781
145	145	0.56
146	146	0.92
147	147	0.751
148	148	0.191
149	149	0.302
15	15	0.0335
150	150	0.383
151	151	0.652
152	152	0.705
153	153	0.338
154	154	0.885
155	155	0.351
156	156	0.949
157	157	0.494
158	158	0.435
159	159	0.423
16	16	0.233
160	160	0.69
161	161	0.425
162	162	0.167
163	163	0.415
164	164	0.0536
165	165	0.875
166	166	0.242
167	167	0.0268
168	168	0.603
169	169	0.489
17	17	0.461
18	18	0.0245
19	19	0.6
2	2	0.149
20	20	0.137
21	21	0.335
22	22	0.977
23	23	0.74
24	24	0.481
25	25	0.304
26	26	0.0245
27	27	0.98
28	28	0.704
29	29	0.00863
3	3	0.199
30	30	0.0439
31	31	0.966
32	32	0.63
33	33	0.138
34	34	0.461
35	35	0.246
36	36	0.0134
37	37	0.136
38	38	0.486
39	39	0.373
4	4	0.216
40	40	0.0297
41	41	0.0452
42	42	0.296
43	43	0.182
44	44	0.354
45	45	0.236
46	46	0.0935
47	47	0.0598
48	48	0.181
49	49	0.0897
5	5	0.511
50	50	0.629
51	51	0.685
52	52	0.356
53	53	0.817
54	54	0.919
55	55	0.932
56	56	0.681
57	57	0.139
58	58	0.565
59	59	0.906
6	6	0.72
60	60	0.86
61	61	0.373
62	62	0.308
63	63	0.521
64	64	0.2
65	65	0.566
66	66	0.0282
67	67	0.525
68	68	0.75
69	69	0.421
7	7	0.216
70	70	0.0343
71	71	0.0366
72	72	0.729
73	73	0.0593
74	74	0.229
75	75	0.00913
76	76	0.0371
77	77	0.41
78	78	0.128
79	79	0.824
8	8	0.178
80	80	0.193
81	81	0.541
82	82	0.854
83	83	0.526
84	84	0.899
85	85	0.765
86	86	0.647
87	87	0.0412
88	88	0.8
89	89	0.846
9	9	0.596
90	90	0.0772
91	91	0.712
92	92	0.991
93	93	0.057
94	94	0.0454
95	95	0.00543
96	96	0.193
97	97	0.781
98	98	0.102
99	99	0.268

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10618

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010013 human cervix - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000002 (uterine cervix)
0000995 (uterus)
0003134 (female reproductive organ)
0000479 (tissue)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010013 (human cervix - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000002,UBERON:0005795,UBERON:0000995,UBERON:0003134,UBERON:0000926,UBERON:0000479,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0006598,UBERON:0002532,UBERON:0003100,UBERON:0000474,UBERON:0006603
+|DRA_sample_Accession=CAGE@SAMD00004902
+|accession_numbers=CAGE;DRX008636;DRR009508;DRZ000933;DRZ002318;DRZ012283;DRZ013668
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000002,UBERON:0000995,UBERON:0003134,UBERON:0000479,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010013
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!1.93!83.26!HAND2;;chr4:57547454..57547469,-!p1@HOPX!1.92!81.57!HOPX;;chr6:152128810..152128827,+!p2@ESR1!1.90!79.26!ESR1;;chr19:46801639..46801699,+!p1@HIF3A!1.90!77.72!HIF3A;;chr11:34642612..34642646,+!p1@EHF!1.88!74.03!EHF;;chr6:152126790..152126828,+!p3@ESR1!1.82!64.41!ESR1;;chr6:152126830..152126847,+!p4@ESR1!1.80!62.33!ESR1;;chr20:62680984..62680999,-!p1@SOX18!1.78!78.03!SOX18;;chr10:119302232..119302265,+!p1@EMX2!1.78!59.71!EMX2;;chr17:80797886..80797906,-!p1@ZNF750!1.71!49.86!ZNF750;;chr6:134210243..134210257,+!p1@TCF21!1.70!48.86!TCF21;;chr21:39870339..39870443,-!p1@ERG!1.67!45.79!ERG;;chr7:27239703..27239715,-!p1@HOXA13!1.65!43.32!HOXA13;;chr8:55370487..55370503,+!p1@SOX17!1.64!42.78!SOX17;;chr11:101000537..101000553,-!p1@PGR!1.64!42.48!PGR;;chr1:40105299..40105326,-!p1@HEYL!1.63!41.55!HEYL;;chr11:113930425..113930471,+!p1@ZBTB16!1.58!52.10!ZBTB16;;chr7:27224842..27224872,-!p1@HOXA11!1.57!36.17!HOXA11;;chr1:170632285..170632309,+!p1@PRRX1!1.56!39.48!PRRX1;;chr11:100999775..100999800,-!p2@PGR!1.56!35.40!PGR;;chr3:128212033..128212051,-!p1@GATA2!1.56!35.40!GATA2;;chr5:134369879..134369898,-!p2@PITX1!1.55!34.55!PITX1;;chr1:164528410..164528428,+!p1@PBX1!1.53!237.70!PBX1;;chrX:66763856..66763896,+!p1@AR!1.53!46.71!AR;;chr1:170633058..170633084,+!p5@PRRX1!1.51!31.24!PRRX1;;chr7:27224795..27224840,-!p2@HOXA11!1.51!31.16!HOXA11;;chr1:170633348..170633399,+!p2@PRRX1!1.50!40.94!PRRX1;;chr17:38256799..38256815,-!p3@NR1D1!1.49!53.10!NR1D1;;chr17:53342311..53342400,+!p1@HLF!1.48!33.01!HLF;;chr2:27371879..27371907,+!p1@TCF23!1.48!29.24!TCF23;;chr7:27239740..27239759,-!p2@HOXA13!1.45!27.09!HOXA13;;chr8:99956662..99956684,+!p1@OSR2!1.44!40.71!OSR2;;chr1:201979743..201979762,+!p1@ELF3!1.44!26.39!ELF3;;chr17:38256822..38256851,-!p1@NR1D1!1.43!194.99!NR1D1;;chr7:27213893..27213954,-!p1@HOXA10!1.43!26.09!HOXA10;;chr7:44143925..44143970,+!p1@AEBP1!1.42!539.96!AEBP1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.41!24.85!PEG3;;chr15:96873984..96873999,+!p3@NR2F2!1.40!172.52!NR2F2;;chr4:81118647..81118666,+!p1@PRDM8!1.40!31.70!PRDM8;;chr22:41763452..41763466,+!p2@TEF!1.40!24.24!TEF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.40!23.85!ZBED1;;chr5:92919100..92919135,+!p3@NR2F1!1.39!28.47!NR2F1;;chr12:52437488..52437507,+!p2@NR4A1!1.37!22.55!NR4A1;;chr6:152128782..152128803,+!p5@ESR1!1.36!22.01!ESR1;;chr3:69788576..69788648,+!p1@MITF!1.35!110.96!MITF;;chr20:55204351..55204377,+!p1@TFAP2C!1.35!26.78!TFAP2C;;chr16:79634624..79634642,-!p1@MAF!1.34!80.41!MAF;;chr2:66662249..66662267,+!p2@MEIS1!1.34!78.10!MEIS1;;chr9:77112244..77112262,+!p1@RORB!1.33!22.78!RORB;;chr11:32457075..32457095,-!p1@WT1!1.33!20.55!WT1;;chr16:79634595..79634620,-!p2@MAF!1.32!36.09!MAF;;chr6:152011654..152011682,+!p1@ESR1!1.32!19.78!ESR1;;chr9:114287433..114287513,+!p1@ZNF483!1.31!50.17!ZNF483;;chr18:53068911..53068935,-!p4@TCF4!1.31!21.85!TCF4;;chr1:170632959..170632987,+!p4@PRRX1!1.31!21.16!PRRX1;;chr8:10588010..10588030,-!p1@SOX7!1.31!19.47!SOX7;;chr15:96874012..96874042,+!p2@NR2F2!1.30!164.21!NR2F2;;chr3:189507432..189507459,+!p1@TP63!1.30!19.01!TP63;;chr15:101069113..101069169,-!p1@CERS3!1.30!18.85!CERS3;;chr6:34524093..34524135,-!p1@SPDEF!1.30!18.85!SPDEF;;chr7:63505799..63505904,+!p1@ZNF727!1.29!18.70!ZNF727;;chr16:51185172..51185197,-!p1@SALL1!1.29!18.70!SALL1;;chr2:145277882..145277967,-!p3@ZEB2!1.28!31.16!ZEB2;;chr7:27192185..27192209,-!p1@HOXA3!1.28!18.01!HOXA3;;chr5:92918919..92918942,+!p1@NR2F1!1.27!77.64!NR2F1;;chr20:51588873..51588953,+!p1@TSHZ2!1.27!23.39!TSHZ2;;chr11:100999802..100999819,-!p4@PGR!1.27!17.47!PGR;;chr6:391743..391759,+!p1@IRF4!1.26!17.39!IRF4;;chr4:174450089..174450153,-!p2@HAND2!1.26!17.31!HAND2;;chr11:101000524..101000535,-!p3@PGR!1.25!16.93!PGR;;chr10:119302268..119302282,+!p4@EMX2!1.25!16.70!EMX2;;chr5:71803177..71803255,-!p1@ZNF366!1.25!16.62!ZNF366;;chr5:134369905..134369972,-!p1@PITX1!1.24!25.09!PITX1;;chr16:79633894..79633954,-!p3@MAF!1.23!30.93!MAF;;chr1:164528942..164528964,+!p11@PBX1!1.23!16.08!PBX1;;chr1:201979703..201979721,+!p2@ELF3!1.23!16.08!ELF3;;chr2:66662281..66662308,+!p1@MEIS1!1.22!53.71!MEIS1;;chr2:19558373..19558392,-!p1@OSR1!1.22!42.17!OSR1;;chr17:7492684..7492778,-!p2@SOX15!1.22!32.78!SOX15;;chr13:72441315..72441454,-!p1@DACH1!1.22!30.93!DACH1;;chr11:113930291..113930339,+!p2@ZBTB16!1.21!24.85!ZBTB16;;chr7:44143978..44143989,+!p2@AEBP1!1.20!26.93!AEBP1;;chr1:170633262..170633285,+!p3@PRRX1!1.20!17.16!PRRX1;;chr1:164528445..164528459,+!p2@PBX1!1.19!45.09!PBX1;;chr1:164528911..164528940,+!p7@PBX1!1.19!21.78!PBX1;;chr22:38380543..38380569,-!p1@SOX10!1.19!14.54!SOX10;;chr10:119302508..119302559,+!p5@EMX2!1.19!14.31!EMX2;;chr12:52445218..52445237,+!p1@NR4A1!1.18!176.29!NR4A1;;chr11:113930401..113930422,+!p3@ZBTB16!1.18!14.24!ZBTB16;;chr11:129245526..129245553,+!p1@BARX2!1.18!14.24!BARX2;;chr7:27205136..27205164,-!p1@HOXA9!1.18!14.16!HOXA9;;chr6:126070769..126070801,+!p1@HEY2!1.17!15.70!HEY2;;chr9:16575347..16575359,-!p12@BNC2!1.17!13.85!BNC2;;chr3:128206762..128206781,-!p2@GATA2!1.16!83.72!GATA2;;chr2:239756671..239756732,+!p1@TWIST2!1.16!42.63!TWIST2;;chr12:24715376..24715432,-!p1@SOX5!1.16!17.24!SOX5;;chr3:138665937..138665968,-!p1@FOXL2!1.16!13.47!FOXL2;;chr12:26277956..26277980,-!p1@BHLHE41!1.15!46.79!BHLHE41;;chr4:4861385..4861398,+!p1@MSX1!1.15!38.94!MSX1;;chr4:174451350..174451363,-!p3@HAND2!1.15!13.24!HAND2;;chr2:27371919..27371935,+!p2@TCF23!1.15!13.16!TCF23;;chr2:176969228..176969260,+!p1@HOXD11!1.15!13.08!HOXD11;;chr6:19837592..19837621,+!p1@ID4!1.14!77.64!ID4;;chr3:114819124..114819200,-!p3@ZBTB20!1.14!29.47!ZBTB20;;chr6:1312325..1312340,+!p1@FOXQ1!1.13!20.39!FOXQ1;;chr16:86544113..86544145,+!p1@FOXF1!1.13!15.70!FOXF1;;chr5:50679228..50679288,+!p1@ISL1!1.13!12.47!ISL1;;chr3:169381420..169381535,-!p1@MECOM!1.12!14.39!MECOM;;chr18:52989031..52989079,-!p2@TCF4!1.11!28.32!TCF4;;chr11:34642656..34642667,+!p2@EHF!1.11!11.85!EHF;;chr19:45971246..45971265,+!p1@FOSB!1.10!214.31!FOSB;;chr1:164528384..164528409,+!p3@PBX1!1.10!36.09!PBX1;;chr12:26277817..26277863,-!p2@BHLHE41!1.10!15.77!BHLHE41;;chr2:122042770..122042785,-!p1@TFCP2L1!1.10!11.62!TFCP2L1;;chr5:88178983..88179012,-!p1@MEF2C!1.09!87.26!MEF2C;;chr15:96869255..96869291,+!p6@NR2F2!1.09!20.62!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!1.09!20.31!ZFP106;;chr15:57511609..57511651,+!p2@TCF12!1.09!19.08!TCF12;;chr7:44143997..44144008,+!p3@AEBP1!1.09!14.47!AEBP1;;chr1:209979467..209979494,-!p1@IRF6!1.09!12.62!IRF6;;chr5:158526917..158526932,-!p1@EBF1!1.07!26.93!EBF1;;chr17:53344980..53345011,+!p3@HLF!1.07!10.85!HLF;;chr1:24645921..24645973,+!p2@GRHL3!1.07!10.62!GRHL3;;chr8:106330656..106330684,+!p1@ZFPM2!1.06!27.63!ZFPM2;;chr15:37390850..37390909,-!p3@MEIS2!1.06!20.78!MEIS2;;chr20:50179368..50179392,-!p2@NFATC2!1.06!13.54!NFATC2;;chr14:75745523..75745537,+!p1@FOS!1.05!1244.75!FOS;;chr11:47400078..47400106,-!p1@SPI1!1.05!10.23!SPI1;;chr10:77161533..77161546,-!p2@ZNF503!1.04!39.86!ZNF503;;chr1:61548374..61548415,+!p4@NFIA!1.04!18.70!NFIA;;chr20:2673383..2673441,+!p1@EBF4!1.04!15.85!EBF4;;chr2:177001290..177001315,+!p1@HOXD3!1.04!9.93!HOXD3;;chrX:66763914..66763933,+!p3@AR!1.04!9.85!AR;;chr10:77161504..77161530,-!p1@ZNF503!1.03!130.35!ZNF503;;chr1:61548069..61548102,+!p3@NFIA!1.03!23.62!NFIA;;chr1:164528616..164528660,+!p5@PBX1!1.03!20.16!PBX1;;chr10:119302182..119302196,+!p6@EMX2!1.03!9.77!EMX2;;chr1:204042233..204042249,+!p1@SOX13!1.02!61.10!SOX13;;chr1:164528340..164528379,+!p4@PBX1!1.02!23.78!PBX1;;chr2:166326200..166326216,+!p1@CSRNP3!1.02!14.16!CSRNP3;;chr2:176994408..176994492,+!p1@HOXD8!1.02!9.39!HOXD8;;chr11:32457413..32457431,-!p2@WT1!1.02!9.39!WT1;;chr3:141150883..141150961,+!p6@ZBTB38!1.01!9.31!ZBTB38;;chr17:59477233..59477263,+!p1@TBX2!1.00!28.47!TBX2;;chrX:66763815..66763854,+!p2@AR!1.00!12.00!AR;;chr8:93107451..93107468,-!p2@RUNX1T1!1.00!9.00!RUNX1T1;;chr15:96873921..96873946,+!p1@NR2F2!0.99!251.09!NR2F2;;chr5:158526459..158526481,-!p2@EBF1!0.99!11.93!EBF1;;chr3:126076242..126076257,-!p1@KLF15!0.99!11.08!KLF15;;chr5:92919068..92919082,+!p5@NR2F1!0.99!10.62!NR2F1;;chr7:42276787..42276815,-!p1@GLI3!0.98!23.32!GLI3;;chr10:119303078..119303169,+!p2@EMX2!0.98!8.62!EMX2;;chr11:101000445..101000465,-!p5@PGR!0.98!8.46!PGR;;chr19:46800289..46800327,+!p2@HIF3A!0.98!8.46!HIF3A;;chr17:53344945..53344977,+!p2@HLF!0.98!8.46!HLF;;chr13:41240737..41240787,-!p1@FOXO1!0.97!101.11!FOXO1;;chr13:73633131..73633149,+!p1@KLF5!0.97!90.80!KLF5;;chr3:114866084..114866118,-!p2@ZBTB20!0.97!31.32!ZBTB20;;chr17:1959369..1959388,+!p2@HIC1!0.97!22.62!HIC1;;chr20:30433396..30433414,-!p1@FOXS1!0.97!8.31!FOXS1;;chr2:176969179..176969226,+!p2@HOXD11!0.97!8.23!HOXD11;;chr9:110252035..110252057,-!p1@KLF4!0.96!133.12!KLF4;;chr5:92918894..92918912,+!p2@NR2F1!0.96!27.09!NR2F1;;chr17:38256877..38256900,-!p2@NR1D1!0.96!26.86!NR1D1;;chr15:96869222..96869251,+!p18@NR2F2!0.96!9.54!NR2F2;;chr18:45663490..45663528,-!p2@ZBTB7C!0.96!8.08!ZBTB7C;;chr1:61547894..61547968,+!p2@NFIA!0.94!23.39!NFIA;;chr7:15726296..15726315,-!p1@MEOX2!0.94!7.77!MEOX2;;chr17:46682321..46682362,-!p1@HOXB6!0.94!7.62!HOXB6;;chr15:37392724..37392757,-!p1@MEIS2!0.93!35.86!MEIS2;;chr12:96588368..96588394,+!p3@ELK3!0.93!20.78!ELK3;;chr19:13134772..13134822,+!p2@NFIX!0.93!11.39!NFIX;;chr2:176981499..176981522,+!p2@HOXD10!0.92!7.39!HOXD10;;chr7:96654133..96654150,-!p1@DLX5!0.92!7.23!DLX5;;chr12:115121962..115121987,-!p1@TBX3!0.90!61.64!TBX3;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.63!CREB3L1;;chr7:113726357..113726443,+!p1@FOXP2!0.90!12.39!FOXP2;;chr18:52989081..52989117,-!p7@TCF4!0.90!10.93!TCF4;;chr19:38085768..38085821,+!p1@ZNF540!0.90!10.70!ZNF540;;chr17:38256590..38256599,-!p8@NR1D1!0.90!7.00!NR1D1;;chr10:119302645..119302712,+!p3@EMX2!0.90!7.00!EMX2;;chr2:176969097..176969109,+!p3@HOXD11!0.90!6.93!HOXD11;;chr20:39317868..39317884,-!p1@MAFB!0.89!84.26!MAFB;;chr18:42260920..42260951,+!p4@SETBP1!0.89!6.85!SETBP1;;chr1:164529004..164529015,+!p15@PBX1!0.89!6.77!PBX1;;chr3:25470156..25470227,+!p2@RARB!0.89!6.69!RARB;;chr19:16435625..16435682,+!p1@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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000995;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003975;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10013-101C4
 |is_a=EFO:0002091;;FF:0010013
 |is_obsolete=
+|library_id=CNhs10618
+|library_id_phase_based=2:CNhs10618
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10013
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10013
 |name=cervix, adult, pool1
 |namespace=FANTOM5
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10618,LSID656,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:AM6000 Lot:0910061 -4
@@ Line 59: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=TFAP2{A,C}:2.78841791972;HBP1_HMGB_SSRP1_UBTF:2.66418199955;TBP:2.59701902244;MYBL2:2.56406023213;MZF1:2.44824711218;MAZ:2.37605828308;SRF:2.32687504132;PRDM1:2.0414836141;RBPJ:1.9928431499;GTF2I:1.96508492723;NFATC1..3:1.96456406655;MYFfamily:1.96328329408;PATZ1:1.94656173308;RREB1:1.9301016147;T:1.92369965392;SP1:1.89683222458;SMAD1..7,9:1.87849452569;SPZ1:1.8580446519;ZNF238:1.80054918696;TFCP2:1.78166297792;TFAP4:1.77962060421;MED-1{core}:1.62538099308;FOX{D1,D2}:1.60862112423;HMX1:1.58635573867;TLX1..3_NFIC{dimer}:1.57951442735;IKZF1:1.55299649151;FOXO1,3,4:1.52068051217;XCPE1{core}:1.51087171808;GCM1,2:1.47423587098;ESR1:1.43125832553;ZNF384:1.42820423251;PAX5:1.41840292539;MTE{core}:1.36168130102;EP300:1.34604240096;ZIC1..3:1.32620001478;HIC1:1.31541993312;XBP1:1.31185547712;TAL1_TCF{3,4,12}:1.29909101468;KLF4:1.27090424711;TFAP2B:1.26811036076;GATA4:1.25663396415;GTF2A1,2:1.23667851969;NR1H4:1.19971727229;NKX2-3_NKX2-5:1.19684641426;TLX2:1.19148512594;EGR1..3:1.18740722222;AR:1.16499251617;CDC5L:1.15885426144;ZNF423:1.14814143823;NANOG:1.102724901;MTF1:1.08809810104;TEAD1:1.0827407704;NKX2-1,4:1.07643584323;ZNF148:1.05457788563;NR3C1:1.02602104519;POU5F1:1.02315125256;GLI1..3:1.01750571477;TBX4,5:1.01535101169;MEF2{A,B,C,D}:0.979118720032;FOXM1:0.898384541259;FOX{I1,J2}:0.863745543426;BPTF:0.862516753192;SOX5:0.835227657119;FOXP1:0.817571328841;GFI1B:0.816475566008;POU3F1..4:0.800482083573;BREu{core}:0.783894064376;PAX1,9:0.778452730138;STAT1,3:0.753657593182;POU2F1..3:0.715175035238;RFX2..5_RFXANK_RFXAP:0.678125301967;NHLH1,2:0.668005521573;SNAI1..3:0.666736187373;POU6F1:0.652478700962;TEF:0.630920105518;HSF1,2:0.616181633554;IRF7:0.603749628904;ADNP_IRX_SIX_ZHX:0.58556188689;HOX{A6,A7,B6,B7}:0.578746948857;IKZF2:0.565389133842;RXRA_VDR{dimer}:0.563907864659;HAND1,2:0.559507693427;GZF1:0.542648782378;FOXN1:0.502390953392;TGIF1:0.484000613926;ZFP161:0.458904100421;ALX4:0.456260801489;ZEB1:0.454683447298;FOXL1:0.445481810129;ATF6:0.442143297693;DBP:0.442133411688;SOX2:0.438783351766;TP53:0.438055247062;FOXD3:0.412131472444;ETS1,2:0.383234016538;REST:0.365481302949;EBF1:0.333111864382;LMO2:0.285072211525;VSX1,2:0.282673278109;IRF1,2:0.277881639669;NKX6-1,2:0.239702783208;MAFB:0.23529657948;PITX1..3:0.22593785283;NR5A1,2:0.22415411019;RXR{A,B,G}:0.1635403803;HNF1A:0.136215248753;SPIB:0.130552496904;GFI1:0.125026577515;POU1F1:0.122944798064;NKX3-2:0.0980797644744;STAT2,4,6:0.0820950859654;RFX1:0.0622102722891;ATF2:0.0435852807468;HOX{A4,D4}:0.0401369975699;ALX1:0.0229090773248;SREBF1,2:0.0183122457425;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00379342179742;UFEwm:-0.00571726424107;CDX1,2,4:-0.0469839426088;FOXQ1:-0.049721280653;PRRX1,2:-0.0592084510019;PAX6:-0.0740725930546;TOPORS:-0.091335341039;ATF4:-0.100509576871;SPI1:-0.116863749423;GATA6:-0.12017256239;ZBTB6:-0.120858799369;PBX1:-0.125873531867;CRX:-0.144929155467;NR6A1:-0.148470871281;ELF1,2,4:-0.15762856181;AHR_ARNT_ARNT2:-0.158113904972;ARID5B:-0.164426393237;ZNF143:-0.169323041345;NFIL3:-0.172336390214;ESRRA:-0.197021208519;HNF4A_NR2F1,2:-0.203567201077;JUN:-0.203684155018;SOX{8,9,10}:-0.229287671114;CUX2:-0.248274958403;LHX3,4:-0.330683785941;NFIX:-0.332947477311;AIRE:-0.335104656767;RUNX1..3:-0.342437679978;SOX17:-0.347001381421;FOS_FOS{B,L1}_JUN{B,D}:-0.356416000848;LEF1_TCF7_TCF7L1,2:-0.36843540368;CEBPA,B_DDIT3:-0.387439622238;FOSL2:-0.39205931299;PAX3,7:-0.392962956347;PDX1:-0.425367502023;FOXA2:-0.429863892409;HLF:-0.439011740808;NRF1:-0.445260206341;CREB1:-0.458354736344;NFKB1_REL_RELA:-0.474565989917;FOX{F1,F2,J1}:-0.508528183042;TFDP1:-0.519999109166;NFE2:-0.524596985268;HES1:-0.54353157358;E2F1..5:-0.545211692512;BACH2:-0.571318134141;FOXP3:-0.58236260042;RORA:-0.582821901417;MYOD1:-0.612343329394;NKX2-2,8:-0.688132881863;NFY{A,B,C}:-0.699054181113;ZBTB16:-0.709909780609;DMAP1_NCOR{1,2}_SMARC:-0.711539698724;PAX4:-0.746353490309;EVI1:-0.761273140894;PPARG:-0.770576967901;YY1:-0.795844346768;ATF5_CREB3:-0.800389556074;NFE2L2:-0.818516053879;HMGA1,2:-0.833907930821;ONECUT1,2:-0.915967365748;NANOG{mouse}:-0.92514125898;bHLH_family:-0.949045969618;PAX2:-0.98496987309;OCT4_SOX2{dimer}:-1.0257076622;EN1,2:-1.04611939704;HOX{A5,B5}:-1.06681190245;NFE2L1:-1.11950628543;HIF1A:-1.26170384115;ELK1,4_GABP{A,B1}:-1.37849715045;NKX3-1:-1.41460366009;MYB:-1.42430972978;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.53655093804;PAX8:-1.95044913739;STAT5{A,B}:-2.0703098399;HOXA9_MEIS1:-2.2025838615
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10013-101C4;search_select_hide=table117:FF:10013-101C4
 }}

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FF:10013-101C4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:13, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0