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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008561
|DRA_sample_Accession=CAGE@SAMD00005317
|accession_numbers=CAGE;DRX008670;DRR009542;DRZ000967;DRZ002352
|accession_numbers=CAGE;DRX008670;DRR009542;DRZ000967;DRZ002352;DRZ012317;DRZ013702
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002113,UBERON:0002100,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002113,UBERON:0002100,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.40!248.63!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.09!121.68!HNF1B;;chr2:122042770..122042785,-!p1@TFCP2L1!2.08!119.39!TFCP2L1;;chr1:201979743..201979762,+!p1@ELF3!1.94!85.66!ELF3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.81!63.99!POU3F3;;chr6:134210243..134210257,+!p1@TCF21!1.77!57.69!TCF21;;chr10:119302232..119302265,+!p1@EMX2!1.66!44.84!EMX2;;chr12:100897130..100897149,+!p3@NR1H4!1.61!39.48!NR1H4;;chr20:43029862..43029900,+!p1@HNF4A!1.56!35.46!HNF4A;;chr11:34642612..34642646,+!p1@EHF!1.53!32.63!EHF;;chr1:40105299..40105326,-!p1@HEYL!1.51!31.36!HEYL;;chr1:151804244..151804310,-!p1@RORC!1.47!28.61!RORC;;chr5:169532896..169532904,+!p1@FOXI1!1.45!27.35!FOXI1;;chr7:73038839..73038862,-!p1@MLXIPL!1.44!26.32!MLXIPL;;chr1:201979703..201979721,+!p2@ELF3!1.43!25.77!ELF3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.77!ZBED1;;chr20:62680984..62680999,-!p1@SOX18!1.42!33.26!SOX18;;chr19:12348371..12348386,-!p5@ZNF44!1.42!25.53!ZNF44;;chr21:39870339..39870443,-!p1@ERG!1.42!25.22!ERG;;chr3:169381420..169381535,-!p1@MECOM!1.41!28.84!MECOM;;chr7:27205136..27205164,-!p1@HOXA9!1.40!24.35!HOXA9;;chr13:72441315..72441454,-!p1@DACH1!1.35!41.92!DACH1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.34!20.96!HOXC5;;chr2:242556880..242556899,-!p5@THAP4!1.34!20.96!THAP4;;chr11:16419037..16419064,-!p3@SOX6!1.34!20.80!SOX6;;chr16:79634595..79634620,-!p2@MAF!1.33!36.41!MAF;;chr3:69915385..69915438,+!p3@MITF!1.33!20.25!MITF;;chr3:141043020..141043049,+!p17@ZBTB38!1.32!20.10!ZBTB38;;chr16:79634624..79634642,-!p1@MAF!1.31!74.47!MAF;;chr11:113930425..113930471,+!p1@ZBTB16!1.27!25.22!ZBTB16;;chr3:126076242..126076257,-!p1@KLF15!1.27!22.14!KLF15;;chr10:119302268..119302282,+!p4@EMX2!1.27!17.49!EMX2;;chr10:102505493..102505546,+!p2@PAX2!1.26!17.26!PAX2;;chr2:176994408..176994492,+!p1@HOXD8!1.26!17.10!HOXD8;;chr17:46682321..46682362,-!p1@HOXB6!1.26!17.10!HOXB6;;chr10:102505327..102505344,+!p1@PAX2!1.26!17.02!PAX2;;chr11:47400078..47400106,-!p1@SPI1!1.25!16.71!SPI1;;chr17:46675558..46675577,-!p2@HOXB6!1.24!16.31!HOXB6;;chr1:209979467..209979494,-!p1@IRF6!1.23!17.73!IRF6;;chr17:59477233..59477263,+!p1@TBX2!1.21!46.57!TBX2;;chr2:73144617..73144654,+!p1@EMX1!1.21!15.13!EMX1;;chr7:115608319..115608352,-!p4@TFEC!1.21!15.05!TFEC;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.82!IRX2;;chr20:43030002..43030028,+!p3@HNF4A!1.19!14.66!HNF4A;;chr10:8096631..8096660,+!p1@GATA3!1.18!17.02!GATA3;;chr7:115608357..115608372,-!p3@TFEC!1.18!14.26!TFEC;;chr9:1050331..1050363,+!p1@DMRT2!1.17!13.79!DMRT2;;chr3:69915369..69915381,+!p4@MITF!1.17!13.63!MITF;;chr10:119303078..119303169,+!p2@EMX2!1.15!13.24!EMX2;;chr16:85932760..85932775,+!p1@IRF8!1.15!13.16!IRF8;;chr19:46801639..46801699,+!p1@HIF3A!1.15!13.16!HIF3A;;chr6:50789717..50789729,+!p4@TFAP2B!1.15!13.00!TFAP2B;;chr17:53342311..53342400,+!p1@HLF!1.14!14.66!HLF;;chr3:128212033..128212051,-!p1@GATA2!1.13!12.61!GATA2;;chr10:119301928..119301955,+!p7@EMX2!1.13!12.53!EMX2;;chr7:27196217..27196246,-!p2@HOXA7!1.12!12.06!HOXA7;;chr11:113930291..113930339,+!p2@ZBTB16!1.11!19.54!ZBTB16;;chr6:100912752..100912778,-!p2@SIM1!1.09!11.43!SIM1;;chr17:46692624..46692659,-!p3@HOXB8!1.09!11.35!HOXB8;;chr18:42277095..42277130,+!p8@SETBP1!1.09!11.35!SETBP1;;chr5:71803177..71803255,-!p1@ZNF366!1.08!10.95!ZNF366;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.07!10.72!POU3F3;;chr1:217311025..217311049,-!p10@ESRRG!1.07!10.72!ESRRG;;chr17:35294075..35294102,+!p1@ENST00000559335!1.07!10.64!LHX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.06!17.26!FOXQ1;;chr8:76319876..76319926,+!p1@HNF4G!1.06!10.56!HNF4G;;chr16:51185172..51185197,-!p1@SALL1!1.06!10.56!SALL1;;chr4:149363494..149363543,-!p1@NR3C2!1.06!10.40!NR3C2;;chr3:25470156..25470227,+!p2@RARB!1.05!10.24!RARB;;chr12:121416340..121416360,+!p1@HNF1A!1.05!10.24!HNF1A;;chr6:126240442..126240459,+!p4@NCOA7!1.04!12.69!NCOA7;;chr7:27205106..27205134,-!p2@HOXA9!1.04!10.09!HOXA9;;chr16:51185573..51185593,-!p3@SALL1!1.04!10.09!SALL1;;chr17:46703212..46703238,-!p2@HOXB9!1.04!10.01!HOXB9;;chr16:51185318..51185348,-!p2@SALL1!1.04!9.85!SALL1;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.11!HOXB7;;chr3:126076264..126076305,-!p2@KLF15!1.03!13.63!KLF15;;chr21:38071430..38071456,+!p1@SIM2!1.03!9.61!SIM2;;chr3:169381183..169381205,-!p4@MECOM!1.02!9.38!MECOM;;chr10:119302150..119302163,+!p8@EMX2!1.02!9.38!EMX2;;chr1:214161272..214161322,+!p1@PROX1!1.01!13.24!PROX1;;chr7:27192185..27192209,-!p1@HOXA3!1.01!9.14!HOXA3;;chr17:59477275..59477286,+!p3@TBX2!1.00!12.21!TBX2;;chr2:68592406..68592424,+!p1@PLEK!1.00!8.91!PLEK;;chr5:92918919..92918942,+!p1@NR2F1!0.97!38.06!NR2F1;;chr12:54378923..54378966,+!p1@HOXC10!0.97!8.27!HOXC10;;chr2:177001290..177001315,+!p1@HOXD3!0.96!8.20!HOXD3;;chr2:176981499..176981522,+!p2@HOXD10!0.96!8.04!HOXD10;;chr12:54380404..54380433,+!p3@HOXC10!0.96!8.04!HOXC10;;chr5:2751785..2751808,-!p2@IRX2!0.95!7.96!IRX2;;chr11:34664014..34664045,+!p4@EHF!0.95!7.88!EHF;;chr3:114343039..114343085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|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.40!248.63!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.09!121.68!HNF1B;;chr2:122042770..122042785,-!p1@TFCP2L1!2.08!119.39!TFCP2L1;;chr1:201979743..201979762,+!p1@ELF3!1.94!85.66!ELF3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.81!63.99!POU3F3;;chr6:134210243..134210257,+!p1@TCF21!1.77!57.69!TCF21;;chr10:119302232..119302265,+!p1@EMX2!1.66!44.84!EMX2;;chr12:100897130..100897149,+!p3@NR1H4!1.61!39.48!NR1H4;;chr20:43029862..43029900,+!p1@HNF4A!1.56!35.46!HNF4A;;chr11:34642612..34642646,+!p1@EHF!1.53!32.63!EHF;;chr1:40105299..40105326,-!p1@HEYL!1.51!31.36!HEYL;;chr1:151804244..151804310,-!p1@RORC!1.47!28.61!RORC;;chr5:169532896..169532904,+!p1@FOXI1!1.45!27.35!FOXI1;;chr7:73038839..73038862,-!p1@MLXIPL!1.44!26.32!MLXIPL;;chr1:201979703..201979721,+!p2@ELF3!1.43!25.77!ELF3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.77!ZBED1;;chr20:62680984..62680999,-!p1@SOX18!1.42!33.26!SOX18;;chr19:12348371..12348386,-!p5@ZNF44!1.42!25.53!ZNF44;;chr21:39870339..39870443,-!p1@ERG!1.42!25.22!ERG;;chr3:169381420..169381535,-!p1@MECOM!1.41!28.84!MECOM;;chr7:27205136..27205164,-!p1@HOXA9!1.40!24.35!HOXA9;;chr13:72441315..72441454,-!p1@DACH1!1.35!41.92!DACH1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.34!20.96!HOXC5;;chr2:242556880..242556899,-!p5@THAP4!1.34!20.96!THAP4;;chr11:16419037..16419064,-!p3@SOX6!1.34!20.80!SOX6;;chr16:79634595..79634620,-!p2@MAF!1.33!36.41!MAF;;chr3:69915385..69915438,+!p3@MITF!1.33!20.25!MITF;;chr3:141043020..141043049,+!p17@ZBTB38!1.32!20.10!ZBTB38;;chr16:79634624..79634642,-!p1@MAF!1.31!74.47!MAF;;chr11:113930425..113930471,+!p1@ZBTB16!1.27!25.22!ZBTB16;;chr3:126076242..126076257,-!p1@KLF15!1.27!22.14!KLF15;;chr10:119302268..119302282,+!p4@EMX2!1.27!17.49!EMX2;;chr10:102505493..102505546,+!p2@PAX2!1.26!17.26!PAX2;;chr2:176994408..176994492,+!p1@HOXD8!1.26!17.10!HOXD8;;chr17:46682321..46682362,-!p1@HOXB6!1.26!17.10!HOXB6;;chr10:102505327..102505344,+!p1@PAX2!1.26!17.02!PAX2;;chr11:47400078..47400106,-!p1@SPI1!1.25!16.71!SPI1;;chr17:46675558..46675577,-!p2@HOXB6!1.24!16.31!HOXB6;;chr1:209979467..209979494,-!p1@IRF6!1.23!17.73!IRF6;;chr17:59477233..59477263,+!p1@TBX2!1.21!46.57!TBX2;;chr2:73144617..73144654,+!p1@EMX1!1.21!15.13!EMX1;;chr7:115608319..115608352,-!p4@TFEC!1.21!15.05!TFEC;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.82!IRX2;;chr20:43030002..43030028,+!p3@HNF4A!1.19!14.66!HNF4A;;chr10:8096631..8096660,+!p1@GATA3!1.18!17.02!GATA3;;chr7:115608357..115608372,-!p3@TFEC!1.18!14.26!TFEC;;chr9:1050331..1050363,+!p1@DMRT2!1.17!13.79!DMRT2;;chr3:69915369..69915381,+!p4@MITF!1.17!13.63!MITF;;chr10:119303078..119303169,+!p2@EMX2!1.15!13.24!EMX2;;chr16:85932760..85932775,+!p1@IRF8!1.15!13.16!IRF8;;chr19:46801639..46801699,+!p1@HIF3A!1.15!13.16!HIF3A;;chr6:50789717..50789729,+!p4@TFAP2B!1.15!13.00!TFAP2B;;chr17:53342311..53342400,+!p1@HLF!1.14!14.66!HLF;;chr3:128212033..128212051,-!p1@GATA2!1.13!12.61!GATA2;;chr10:119301928..119301955,+!p7@EMX2!1.13!12.53!EMX2;;chr7:27196217..27196246,-!p2@HOXA7!1.12!12.06!HOXA7;;chr11:113930291..113930339,+!p2@ZBTB16!1.11!19.54!ZBTB16;;chr6:100912752..100912778,-!p2@SIM1!1.09!11.43!SIM1;;chr17:46692624..46692659,-!p3@HOXB8!1.09!11.35!HOXB8;;chr18:42277095..42277130,+!p8@SETBP1!1.09!11.35!SETBP1;;chr5:71803177..71803255,-!p1@ZNF366!1.08!10.95!ZNF366;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.07!10.72!POU3F3;;chr1:217311025..217311049,-!p10@ESRRG!1.07!10.72!ESRRG;;chr17:35294075..35294102,+!p1@ENST00000559335!1.07!10.64!LHX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.06!17.26!FOXQ1;;chr8:76319876..76319926,+!p1@HNF4G!1.06!10.56!HNF4G;;chr16:51185172..51185197,-!p1@SALL1!1.06!10.56!SALL1;;chr4:149363494..149363543,-!p1@NR3C2!1.06!10.40!NR3C2;;chr3:25470156..25470227,+!p2@RARB!1.05!10.24!RARB;;chr12:121416340..121416360,+!p1@HNF1A!1.05!10.24!HNF1A;;chr6:126240442..126240459,+!p4@NCOA7!1.04!12.69!NCOA7;;chr7:27205106..27205134,-!p2@HOXA9!1.04!10.09!HOXA9;;chr16:51185573..51185593,-!p3@SALL1!1.04!10.09!SALL1;;chr17:46703212..46703238,-!p2@HOXB9!1.04!10.01!HOXB9;;chr16:51185318..51185348,-!p2@SALL1!1.04!9.85!SALL1;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.11!HOXB7;;chr3:126076264..126076305,-!p2@KLF15!1.03!13.63!KLF15;;chr21:38071430..38071456,+!p1@SIM2!1.03!9.61!SIM2;;chr3:169381183..169381205,-!p4@MECOM!1.02!9.38!MECOM;;chr10:119302150..119302163,+!p8@EMX2!1.02!9.38!EMX2;;chr1:214161272..214161322,+!p1@PROX1!1.01!13.24!PROX1;;chr7:27192185..27192209,-!p1@HOXA3!1.01!9.14!HOXA3;;chr17:59477275..59477286,+!p3@TBX2!1.00!12.21!TBX2;;chr2:68592406..68592424,+!p1@PLEK!1.00!8.91!PLEK;;chr5:92918919..92918942,+!p1@NR2F1!0.97!38.06!NR2F1;;chr12:54378923..54378966,+!p1@HOXC10!0.97!8.27!HOXC10;;chr2:177001290..177001315,+!p1@HOXD3!0.96!8.20!HOXD3;;chr2:176981499..176981522,+!p2@HOXD10!0.96!8.04!HOXD10;;chr12:54380404..54380433,+!p3@HOXC10!0.96!8.04!HOXC10;;chr5:2751785..2751808,-!p2@IRX2!0.95!7.96!IRX2;;chr11:34664014..34664045,+!p4@EHF!0.95!7.88!EHF;;chr3:114343039..114343085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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687
|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg38.nobarcode.ctss.bed.gz
|id=FF:10017-101C8
|id=FF:10017-101C8
|is_a=EFO:0002091;;FF:0010017
|is_a=EFO:0002091;;FF:0010017
|is_obsolete=
|is_obsolete=
|library_id=CNhs10622
|library_id=CNhs10622
|library_id_phase_based=1:CNhs10622
|library_id_phase_based=2:CNhs10622
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10017
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10017
|name=kidney, adult, pool1
|name=kidney, adult, pool1
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10622,LSID656,release008,COMPLETED
|profile_hcage=CNhs10622,LSID656,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 101:
|top_motifs=HNF1A:6.28269066374;HNF4A_NR2F1,2:3.93395453235;ADNP_IRX_SIX_ZHX:3.71420882853;AR:2.12159427098;ALX1:2.01744992309;SP1:1.96932214447;SNAI1..3:1.96897769706;PAX6:1.9558552635;HOX{A6,A7,B6,B7}:1.92570453162;EP300:1.88088136302;TFCP2:1.79516727426;FOXQ1:1.69495475948;ZEB1:1.69015168453;NR5A1,2:1.60091655044;MYOD1:1.57691910214;NR6A1:1.56531029797;SREBF1,2:1.44657912533;NKX3-2:1.43768346638;PAX5:1.43588952136;ESRRA:1.43422817718;MAZ:1.34998001804;MTF1:1.33669614413;FOXD3:1.26368052589;NFATC1..3:1.20651487129;STAT1,3:1.18274548005;FOX{D1,D2}:1.17489073314;NR3C1:1.16611753264;T:1.11565192316;FOXO1,3,4:1.10057935671;NKX2-3_NKX2-5:1.06430660813;HIC1:1.05219945312;STAT2,4,6:1.03549308545;SOX5:0.963750428507;ESR1:0.931740189567;MYBL2:0.92479352486;HBP1_HMGB_SSRP1_UBTF:0.909453414527;FOXP3:0.904288412923;MED-1{core}:0.878163942138;VSX1,2:0.838304140317;TLX1..3_NFIC{dimer}:0.789520953312;XCPE1{core}:0.776722997301;RXRA_VDR{dimer}:0.776510097358;PATZ1:0.764289991405;LHX3,4:0.747193684154;GTF2I:0.723605411785;TEAD1:0.690567696326;SMAD1..7,9:0.674892101802;TBP:0.665725568473;NR1H4:0.654157537168;PAX1,9:0.636092053504;TFAP2{A,C}:0.627329874406;NANOG{mouse}:0.599637762872;IRF7:0.595395481897;TFAP2B:0.585380897313;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.580643178273;PRDM1:0.545957686706;HAND1,2:0.538890796831;MYFfamily:0.52075620476;RBPJ:0.499279368593;IKZF1:0.493385349098;GFI1B:0.492192519007;RXR{A,B,G}:0.477445334359;TGIF1:0.468266873359;ATF2:0.459813391237;DBP:0.44474322204;BPTF:0.436225692306;GFI1:0.431075391128;FOX{I1,J2}:0.414766169463;bHLH_family:0.403616548642;PDX1:0.393724996292;MZF1:0.386171758731;SRF:0.369230409405;MTE{core}:0.357301472721;SPZ1:0.338572965952;ZNF423:0.336996545169;FOXL1:0.331108308346;FOXN1:0.329465716137;PBX1:0.329442929308;IRF1,2:0.30187383008;POU2F1..3:0.273747466942;LMO2:0.260906524089;PPARG:0.228470239848;EBF1:0.227060870801;RFX1:0.218411832344;ZFP161:0.206496066359;GTF2A1,2:0.184624415984;GCM1,2:0.164658345974;ZNF143:0.164073045548;TFAP4:0.119086960078;NKX2-1,4:0.114374981228;ATF6:0.100910053724;ETS1,2:0.0929683516519;EGR1..3:0.0922303334102;RFX2..5_RFXANK_RFXAP:0.091992142222;TEF:0.0908908722867;MAFB:0.0748360875405;FOXA2:0.0611651710255;ELF1,2,4:0.0608658916745;MEF2{A,B,C,D}:0.0584685000818;PITX1..3:0.0405326403186;ATF4:0.0358587740412;ZNF148:0.0340751091252;ZBTB16:0.0279835825185;SPIB:0.0178423085485;PRRX1,2:0.0146159954016;FOXM1:-0.00990699440247;KLF4:-0.0100248547589;NHLH1,2:-0.0193682990498;NKX6-1,2:-0.0213346348612;POU6F1:-0.0224917410238;XBP1:-0.0602970125481;IKZF2:-0.0820306011456;SPI1:-0.0993341189417;NFE2:-0.122545130877;POU3F1..4:-0.122946491939;TLX2:-0.127764305335;ONECUT1,2:-0.130473841526;GATA6:-0.132920422256;NRF1:-0.137286711685;JUN:-0.139651919166;DMAP1_NCOR{1,2}_SMARC:-0.151664184619;NFY{A,B,C}:-0.177445295283;CUX2:-0.196723725009;NFIX:-0.199104613927;RORA:-0.206512250659;RREB1:-0.207794639217;GZF1:-0.229063520508;ZIC1..3:-0.276849511718;ELK1,4_GABP{A,B1}:-0.280042627738;POU5F1:-0.285347126088;EN1,2:-0.299604094626;TBX4,5:-0.303557347221;ARID5B:-0.314342336234;HIF1A:-0.320145837953;FOXP1:-0.335162377216;HMX1:-0.361004940951;NFE2L2:-0.369626425941;REST:-0.389106198762;GLI1..3:-0.397410749036;EVI1:-0.408343044689;TP53:-0.411669239118;NFIL3:-0.41497889036;NFKB1_REL_RELA:-0.415372023081;PAX2:-0.43637825051;HMGA1,2:-0.439605015536;BREu{core}:-0.452419065562;YY1:-0.466143683265;HLF:-0.478368816662;SOX{8,9,10}:-0.480738717044;STAT5{A,B}:-0.490392533077;CEBPA,B_DDIT3:-0.50156279225;HOX{A4,D4}:-0.574523065572;POU1F1:-0.582061032341;CDC5L:-0.614056218691;GATA4:-0.618438668001;ATF5_CREB3:-0.618914565342;PAX4:-0.62371982561;HOX{A5,B5}:-0.629187787978;UFEwm:-0.641028007223;FOSL2:-0.651691824822;OCT4_SOX2{dimer}:-0.655518166242;BACH2:-0.664880086724;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.67235660548;HSF1,2:-0.694425837544;SOX2:-0.69451476091;RUNX1..3:-0.725013116535;ZBTB6:-0.727784353655;FOS_FOS{B,L1}_JUN{B,D}:-0.740181330327;FOX{F1,F2,J1}:-0.741368838447;LEF1_TCF7_TCF7L1,2:-0.779079141811;ALX4:-0.834243869405;NFE2L1:-0.872589720101;CREB1:-0.909821728726;ZNF384:-0.924022512097;AIRE:-0.928475883746;ZNF238:-0.957671461535;NKX3-1:-0.95979381671;NANOG:-1.00130147767;PAX8:-1.0018201458;TAL1_TCF{3,4,12}:-1.08925493642;SOX17:-1.10053154908;E2F1..5:-1.10242941345;TFDP1:-1.1688393974;CDX1,2,4:-1.44235875664;HES1:-1.47188349267;CRX:-1.52068047059;MYB:-1.52933306172;AHR_ARNT_ARNT2:-1.55023677183;HOXA9_MEIS1:-1.61227484734;NKX2-2,8:-1.7551682066;TOPORS:-1.89330712307;PAX3,7:-1.96544129657
|top_motifs=HNF1A:6.28269066374;HNF4A_NR2F1,2:3.93395453235;ADNP_IRX_SIX_ZHX:3.71420882853;AR:2.12159427098;ALX1:2.01744992309;SP1:1.96932214447;SNAI1..3:1.96897769706;PAX6:1.9558552635;HOX{A6,A7,B6,B7}:1.92570453162;EP300:1.88088136302;TFCP2:1.79516727426;FOXQ1:1.69495475948;ZEB1:1.69015168453;NR5A1,2:1.60091655044;MYOD1:1.57691910214;NR6A1:1.56531029797;SREBF1,2:1.44657912533;NKX3-2:1.43768346638;PAX5:1.43588952136;ESRRA:1.43422817718;MAZ:1.34998001804;MTF1:1.33669614413;FOXD3:1.26368052589;NFATC1..3:1.20651487129;STAT1,3:1.18274548005;FOX{D1,D2}:1.17489073314;NR3C1:1.16611753264;T:1.11565192316;FOXO1,3,4:1.10057935671;NKX2-3_NKX2-5:1.06430660813;HIC1:1.05219945312;STAT2,4,6:1.03549308545;SOX5:0.963750428507;ESR1:0.931740189567;MYBL2:0.92479352486;HBP1_HMGB_SSRP1_UBTF:0.909453414527;FOXP3:0.904288412923;MED-1{core}:0.878163942138;VSX1,2:0.838304140317;TLX1..3_NFIC{dimer}:0.789520953312;XCPE1{core}:0.776722997301;RXRA_VDR{dimer}:0.776510097358;PATZ1:0.764289991405;LHX3,4:0.747193684154;GTF2I:0.723605411785;TEAD1:0.690567696326;SMAD1..7,9:0.674892101802;TBP:0.665725568473;NR1H4:0.654157537168;PAX1,9:0.636092053504;TFAP2{A,C}:0.627329874406;NANOG{mouse}:0.599637762872;IRF7:0.595395481897;TFAP2B:0.585380897313;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.580643178273;PRDM1:0.545957686706;HAND1,2:0.538890796831;MYFfamily:0.52075620476;RBPJ:0.499279368593;IKZF1:0.493385349098;GFI1B:0.492192519007;RXR{A,B,G}:0.477445334359;TGIF1:0.468266873359;ATF2:0.459813391237;DBP:0.44474322204;BPTF:0.436225692306;GFI1:0.431075391128;FOX{I1,J2}:0.414766169463;bHLH_family:0.403616548642;PDX1:0.393724996292;MZF1:0.386171758731;SRF:0.369230409405;MTE{core}:0.357301472721;SPZ1:0.338572965952;ZNF423:0.336996545169;FOXL1:0.331108308346;FOXN1:0.329465716137;PBX1:0.329442929308;IRF1,2:0.30187383008;POU2F1..3:0.273747466942;LMO2:0.260906524089;PPARG:0.228470239848;EBF1:0.227060870801;RFX1:0.218411832344;ZFP161:0.206496066359;GTF2A1,2:0.184624415984;GCM1,2:0.164658345974;ZNF143:0.164073045548;TFAP4:0.119086960078;NKX2-1,4:0.114374981228;ATF6:0.100910053724;ETS1,2:0.0929683516519;EGR1..3:0.0922303334102;RFX2..5_RFXANK_RFXAP:0.091992142222;TEF:0.0908908722867;MAFB:0.0748360875405;FOXA2:0.0611651710255;ELF1,2,4:0.0608658916745;MEF2{A,B,C,D}:0.0584685000818;PITX1..3:0.0405326403186;ATF4:0.0358587740412;ZNF148:0.0340751091252;ZBTB16:0.0279835825185;SPIB:0.0178423085485;PRRX1,2:0.0146159954016;FOXM1:-0.00990699440247;KLF4:-0.0100248547589;NHLH1,2:-0.0193682990498;NKX6-1,2:-0.0213346348612;POU6F1:-0.0224917410238;XBP1:-0.0602970125481;IKZF2:-0.0820306011456;SPI1:-0.0993341189417;NFE2:-0.122545130877;POU3F1..4:-0.122946491939;TLX2:-0.127764305335;ONECUT1,2:-0.130473841526;GATA6:-0.132920422256;NRF1:-0.137286711685;JUN:-0.139651919166;DMAP1_NCOR{1,2}_SMARC:-0.151664184619;NFY{A,B,C}:-0.177445295283;CUX2:-0.196723725009;NFIX:-0.199104613927;RORA:-0.206512250659;RREB1:-0.207794639217;GZF1:-0.229063520508;ZIC1..3:-0.276849511718;ELK1,4_GABP{A,B1}:-0.280042627738;POU5F1:-0.285347126088;EN1,2:-0.299604094626;TBX4,5:-0.303557347221;ARID5B:-0.314342336234;HIF1A:-0.320145837953;FOXP1:-0.335162377216;HMX1:-0.361004940951;NFE2L2:-0.369626425941;REST:-0.389106198762;GLI1..3:-0.397410749036;EVI1:-0.408343044689;TP53:-0.411669239118;NFIL3:-0.41497889036;NFKB1_REL_RELA:-0.415372023081;PAX2:-0.43637825051;HMGA1,2:-0.439605015536;BREu{core}:-0.452419065562;YY1:-0.466143683265;HLF:-0.478368816662;SOX{8,9,10}:-0.480738717044;STAT5{A,B}:-0.490392533077;CEBPA,B_DDIT3:-0.50156279225;HOX{A4,D4}:-0.574523065572;POU1F1:-0.582061032341;CDC5L:-0.614056218691;GATA4:-0.618438668001;ATF5_CREB3:-0.618914565342;PAX4:-0.62371982561;HOX{A5,B5}:-0.629187787978;UFEwm:-0.641028007223;FOSL2:-0.651691824822;OCT4_SOX2{dimer}:-0.655518166242;BACH2:-0.664880086724;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.67235660548;HSF1,2:-0.694425837544;SOX2:-0.69451476091;RUNX1..3:-0.725013116535;ZBTB6:-0.727784353655;FOS_FOS{B,L1}_JUN{B,D}:-0.740181330327;FOX{F1,F2,J1}:-0.741368838447;LEF1_TCF7_TCF7L1,2:-0.779079141811;ALX4:-0.834243869405;NFE2L1:-0.872589720101;CREB1:-0.909821728726;ZNF384:-0.924022512097;AIRE:-0.928475883746;ZNF238:-0.957671461535;NKX3-1:-0.95979381671;NANOG:-1.00130147767;PAX8:-1.0018201458;TAL1_TCF{3,4,12}:-1.08925493642;SOX17:-1.10053154908;E2F1..5:-1.10242941345;TFDP1:-1.1688393974;CDX1,2,4:-1.44235875664;HES1:-1.47188349267;CRX:-1.52068047059;MYB:-1.52933306172;AHR_ARNT_ARNT2:-1.55023677183;HOXA9_MEIS1:-1.61227484734;NKX2-2,8:-1.7551682066;TOPORS:-1.89330712307;PAX3,7:-1.96544129657
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10017-101C8;search_select_hide=table117:FF:10017-101C8
}}
}}

Latest revision as of 12:14, 3 June 2020

Name:kidney, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10622
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stage60,62,63 years old adult
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyAmbion
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number0910061 -8
catalog numberCat:AM6000 Lot:0910061 -8
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005317
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10622 CAGE DRX008670 DRR009542
Accession ID Hg19

Library idBAMCTSS
CNhs10622 DRZ000967 DRZ002352
Accession ID Hg38

Library idBAMCTSS
CNhs10622 DRZ012317 DRZ013702
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.103
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.326
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.0329
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.271
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.00615
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0329
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0.424
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0636
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.079
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.0329
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.37
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.252
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.259
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.362
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.65
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.0129
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.00138
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0922
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0329
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.0329
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.692
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0329
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.118
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0525
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.168
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0403
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0419
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0329
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0329
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0.144
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.542
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.191
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0329
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.21
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0329
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.0329
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.0329
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0.844
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0922
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0779
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0329
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10622

Jaspar motifP-value
MA0002.20.052
MA0003.10.192
MA0004.10.323
MA0006.10.0422
MA0007.10.275
MA0009.10.666
MA0014.10.172
MA0017.14.21675e-11
MA0018.20.0559
MA0019.10.0222
MA0024.10.00712
MA0025.10.698
MA0027.10.474
MA0028.10.0623
MA0029.10.258
MA0030.10.0586
MA0031.10.266
MA0035.20.794
MA0038.10.107
MA0039.20.0431
MA0040.10.682
MA0041.10.297
MA0042.10.852
MA0043.10.16
MA0046.18.71508e-124
MA0047.20.93
MA0048.10.0134
MA0050.10.31
MA0051.10.178
MA0052.10.551
MA0055.10.0803
MA0057.10.486
MA0058.10.535
MA0059.10.0251
MA0060.10.51
MA0061.12.37833e-4
MA0062.20.01
MA0065.20.124
MA0066.10.386
MA0067.10.00458
MA0068.10.003
MA0069.10.13
MA0070.10.758
MA0071.10.423
MA0072.10.466
MA0073.10.983
MA0074.10.446
MA0076.10.133
MA0077.10.53
MA0078.10.00218
MA0079.20.0555
MA0080.20.233
MA0081.10.147
MA0083.10.869
MA0084.10.54
MA0087.10.111
MA0088.10.21
MA0090.10.0047
MA0091.10.572
MA0092.10.785
MA0093.10.389
MA0099.21.24127e-13
MA0100.10.108
MA0101.10.00673
MA0102.20.939
MA0103.10.00227
MA0104.20.00118
MA0105.16.69791e-6
MA0106.10.192
MA0107.10.0108
MA0108.21.31865e-5
MA0111.10.348
MA0112.20.713
MA0113.10.0935
MA0114.11.60594e-8
MA0115.10.0043
MA0116.10.0282
MA0117.10.0846
MA0119.10.274
MA0122.10.226
MA0124.10.769
MA0125.10.253
MA0131.10.378
MA0135.10.116
MA0136.10.217
MA0137.24.85894e-5
MA0138.20.522
MA0139.10.612
MA0140.10.162
MA0141.10.0591
MA0142.10.912
MA0143.10.392
MA0144.10.016
MA0145.10.00107
MA0146.10.673
MA0147.12.36174e-4
MA0148.10.285
MA0149.10.312
MA0150.10.00707
MA0152.10.106
MA0153.17.50836e-70
MA0154.10.151
MA0155.10.559
MA0156.10.0721
MA0157.10.763
MA0159.10.143
MA0160.10.362
MA0162.10.804
MA0163.12.26051e-5
MA0164.10.147
MA0258.10.44
MA0259.10.0227



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10622

Novel motifP-value
10.192
100.0493
1000.618
1010.335
1020.122
1030.147
1040.463
1050.937
1060.873
1070.194
1080.998
1090.1
110.155
1100.0925
1110.0167
1120.443
1130.779
1140.0136
1150.827
1160.156
1170.00966
1180.162
1190.635
120.968
1200.144
1210.415
1220.423
1230.0049
1240.595
1258.94152e-4
1260.175
1270.122
1280.85
1290.688
130.327
1300.437
1310.548
1320.626
1330.269
1340.573
1350.397
1360.651
1370.377
1380.513
1390.169
140.621
1400.657
1410.154
1420.998
1430.00967
1440.364
1450.823
1460.0614
1470.776
1480.44
1490.387
150.136
1500.614
1510.713
1520.126
1530.402
1540.173
1550.799
1560.473
1570.468
1580.173
1590.643
160.877
1600.286
1610.251
1620.622
1630.791
1640.0548
1650.402
1660.433
1670.0321
1680.249
1690.472
170.446
180.00109
190.492
20.172
200.305
210.0795
220.79
230.85
240.618
250.41
260.137
270.729
280.924
290.0137
30.147
300.0309
310.939
320.023
330.845
340.416
350.132
360.0226
370.305
380.757
390.213
40.217
400.313
410.0654
420.153
430.336
440.534
450.187
460.137
470.386
480.574
490.0514
50.417
500.779
510.402
520.0965
530.572
540.798
550.989
560.741
570.197
580.862
590.831
60.231
600.728
610.737
620.459
630.611
640.254
650.963
660.317
670.103
680.263
690.632
70.789
700.122
710.0219
720.833
730.775
740.614
750.0183
760.0125
770.0537
780.451
790.0451
80.418
800.103
810.262
820.878
830.991
840.326
850.682
860.571
870.648
880.753
890.855
90.517
900.549
910.373
920.678
930.273
940.0376
950.189
960.825
970.421
980.32
990.158



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10622


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002113 (kidney)
0002100 (trunk)
0000479 (tissue)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010017 (human kidney - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)

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