FF:10028-101E1: Difference between revisions

Latest revision as of 12:15, 3 June 2020

Name:	thyroid, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10634
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	thyroid
dev stage	67,68,78 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -19
catalog number	Cat:AM6000 Lot:0910061 -19
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004739

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10634		CAGE		DRX008747		DRR009619

Accession ID Hg19

Library id		BAM		CTSS
CNhs10634		DRZ001044		DRZ002429

Accession ID Hg38

Library id		BAM		CTSS
CNhs10634		DRZ012394		DRZ013779

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.119
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.394
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.0268
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0.727
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.222
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0268
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.011
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.104
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.121
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0985
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0268
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.109
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.15
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-3.023556e-4
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.025
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0268
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.687
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0268
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.115
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.108
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.38
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0268
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00407
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.612
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.052
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.16
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.0759
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0268
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0.291
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.052
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.0268
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.0268
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.052
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.052
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.00594
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0.0268
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.0268
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10634

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00522
MA0003.1	MA0003.1	0.56
MA0004.1	MA0004.1	0.365
MA0006.1	MA0006.1	0.362
MA0007.1	MA0007.1	0.76
MA0009.1	MA0009.1	0.462
MA0014.1	MA0014.1	0.38
MA0017.1	MA0017.1	0.733
MA0018.2	MA0018.2	0.603
MA0019.1	MA0019.1	0.0312
MA0024.1	MA0024.1	0.168
MA0025.1	MA0025.1	0.912
MA0027.1	MA0027.1	0.565
MA0028.1	MA0028.1	0.281
MA0029.1	MA0029.1	0.38
MA0030.1	MA0030.1	2.03097e-4
MA0031.1	MA0031.1	0.00398
MA0035.2	MA0035.2	0.447
MA0038.1	MA0038.1	0.532
MA0039.2	MA0039.2	0.313
MA0040.1	MA0040.1	0.78
MA0041.1	MA0041.1	0.0265
MA0042.1	MA0042.1	0.0977
MA0043.1	MA0043.1	0.563
MA0046.1	MA0046.1	0.186
MA0047.2	MA0047.2	0.00164
MA0048.1	MA0048.1	0.0217
MA0050.1	MA0050.1	0.0431
MA0051.1	MA0051.1	0.0173
MA0052.1	MA0052.1	5.85386e-6
MA0055.1	MA0055.1	0.189
MA0057.1	MA0057.1	0.621
MA0058.1	MA0058.1	0.551
MA0059.1	MA0059.1	0.0315
MA0060.1	MA0060.1	0.531
MA0061.1	MA0061.1	0.0024
MA0062.2	MA0062.2	0.0599
MA0065.2	MA0065.2	0.0946
MA0066.1	MA0066.1	0.0763
MA0067.1	MA0067.1	0.0486
MA0068.1	MA0068.1	9.12001e-4
MA0069.1	MA0069.1	0.0922
MA0070.1	MA0070.1	0.699
MA0071.1	MA0071.1	0.567
MA0072.1	MA0072.1	0.734
MA0073.1	MA0073.1	0.893
MA0074.1	MA0074.1	0.595
MA0076.1	MA0076.1	0.464
MA0077.1	MA0077.1	0.425
MA0078.1	MA0078.1	0.0148
MA0079.2	MA0079.2	0.0432
MA0080.2	MA0080.2	0.00874
MA0081.1	MA0081.1	0.291
MA0083.1	MA0083.1	0.694
MA0084.1	MA0084.1	0.548
MA0087.1	MA0087.1	0.411
MA0088.1	MA0088.1	0.06
MA0090.1	MA0090.1	0.0072
MA0091.1	MA0091.1	0.261
MA0092.1	MA0092.1	0.634
MA0093.1	MA0093.1	0.452
MA0099.2	MA0099.2	6.17197e-13
MA0100.1	MA0100.1	0.494
MA0101.1	MA0101.1	0.0298
MA0102.2	MA0102.2	0.513
MA0103.1	MA0103.1	0.065
MA0104.2	MA0104.2	0.00798
MA0105.1	MA0105.1	1.99175e-9
MA0106.1	MA0106.1	0.0498
MA0107.1	MA0107.1	0.0335
MA0108.2	MA0108.2	1.59222e-6
MA0111.1	MA0111.1	0.901
MA0112.2	MA0112.2	0.102
MA0113.1	MA0113.1	0.0316
MA0114.1	MA0114.1	0.279
MA0115.1	MA0115.1	0.202
MA0116.1	MA0116.1	4.98069e-5
MA0117.1	MA0117.1	0.366
MA0119.1	MA0119.1	0.473
MA0122.1	MA0122.1	0.0944
MA0124.1	MA0124.1	0.771
MA0125.1	MA0125.1	0.489
MA0131.1	MA0131.1	0.634
MA0135.1	MA0135.1	0.119
MA0136.1	MA0136.1	0.00707
MA0137.2	MA0137.2	3.8898e-4
MA0138.2	MA0138.2	0.943
MA0139.1	MA0139.1	0.846
MA0140.1	MA0140.1	0.189
MA0141.1	MA0141.1	0.337
MA0142.1	MA0142.1	0.259
MA0143.1	MA0143.1	0.0587
MA0144.1	MA0144.1	0.191
MA0145.1	MA0145.1	0.182
MA0146.1	MA0146.1	0.219
MA0147.1	MA0147.1	0.00103
MA0148.1	MA0148.1	0.00128
MA0149.1	MA0149.1	0.081
MA0150.1	MA0150.1	0.00165
MA0152.1	MA0152.1	0.429
MA0153.1	MA0153.1	0.0257
MA0154.1	MA0154.1	0.037
MA0155.1	MA0155.1	0.852
MA0156.1	MA0156.1	0.0263
MA0157.1	MA0157.1	0.0724
MA0159.1	MA0159.1	0.611
MA0160.1	MA0160.1	0.42
MA0162.1	MA0162.1	0.46
MA0163.1	MA0163.1	1.1513e-12
MA0164.1	MA0164.1	0.141
MA0258.1	MA0258.1	0.0288
MA0259.1	MA0259.1	0.0557

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10634

Novel motif	Logo	P-value
1	1	0.111
10	10	0.00773
100	100	0.21
101	101	0.619
102	102	0.486
103	103	0.168
104	104	0.318
105	105	0.372
106	106	0.231
107	107	0.944
108	108	0.773
109	109	0.139
11	11	0.0308
110	110	0.0744
111	111	0.0184
112	112	0.915
113	113	0.543
114	114	0.0185
115	115	0.934
116	116	0.526
117	117	0.0425
118	118	0.148
119	119	0.14
12	12	0.539
120	120	0.0351
121	121	0.91
122	122	0.26
123	123	0.00971
124	124	0.934
125	125	0.28
126	126	0.352
127	127	0.572
128	128	0.274
129	129	0.514
13	13	0.232
130	130	0.231
131	131	0.408
132	132	0.0998
133	133	0.225
134	134	0.46
135	135	0.792
136	136	0.708
137	137	0.221
138	138	0.433
139	139	0.288
14	14	0.962
140	140	0.62
141	141	0.752
142	142	0.601
143	143	0.00644
144	144	0.702
145	145	0.496
146	146	0.781
147	147	0.805
148	148	0.0092
149	149	0.624
15	15	0.142
150	150	0.439
151	151	0.523
152	152	0.164
153	153	0.527
154	154	0.196
155	155	0.199
156	156	0.113
157	157	0.896
158	158	0.258
159	159	0.809
16	16	0.104
160	160	0.68
161	161	0.265
162	162	0.931
163	163	0.114
164	164	0.256
165	165	0.898
166	166	0.502
167	167	0.118
168	168	0.83
169	169	0.38
17	17	0.184
18	18	0.00671
19	19	0.929
2	2	0.509
20	20	0.282
21	21	0.497
22	22	0.971
23	23	0.619
24	24	0.697
25	25	0.621
26	26	0.013
27	27	0.832
28	28	0.79
29	29	0.0416
3	3	0.111
30	30	0.0328
31	31	0.712
32	32	0.0163
33	33	0.601
34	34	0.67
35	35	0.268
36	36	0.0071
37	37	0.239
38	38	0.753
39	39	0.322
4	4	0.259
40	40	0.167
41	41	0.134
42	42	0.219
43	43	0.117
44	44	0.681
45	45	0.376
46	46	0.0326
47	47	0.041
48	48	0.11
49	49	0.0324
5	5	0.528
50	50	0.645
51	51	0.566
52	52	0.664
53	53	0.482
54	54	0.557
55	55	0.682
56	56	0.746
57	57	0.124
58	58	0.685
59	59	0.948
6	6	0.482
60	60	0.763
61	61	0.184
62	62	0.268
63	63	0.663
64	64	0.191
65	65	0.504
66	66	0.106
67	67	0.816
68	68	0.606
69	69	0.722
7	7	0.688
70	70	0.0637
71	71	0.0199
72	72	0.92
73	73	0.508
74	74	0.278
75	75	0.0315
76	76	0.0531
77	77	0.535
78	78	0.248
79	79	0.249
8	8	0.0411
80	80	0.354
81	81	0.0502
82	82	0.369
83	83	0.41
84	84	0.428
85	85	0.461
86	86	0.498
87	87	0.408
88	88	0.798
89	89	0.856
9	9	0.857
90	90	0.0978
91	91	0.933
92	92	0.639
93	93	0.672
94	94	0.0741
95	95	0.227
96	96	0.395
97	97	0.454
98	98	0.628
99	99	0.563

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10634

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010028 human thyroid - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002046 (thyroid gland)
0000479 (tissue)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010028 (human thyroid - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0007123 (pharyngeal pouch 2)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004739
+|accession_numbers=CAGE;DRX008747;DRR009619;DRZ001044;DRZ002429;DRZ012394;DRZ013779
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002046,UBERON:0000479,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002530,UBERON:0010317,UBERON:0000949
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.62!418.73!PAX8;;chr4:57547454..57547469,-!p1@HOPX!2.58!379.53!HOPX;;chr9:100615499..100615519,+!p1@FOXE1!2.38!240.33!FOXE1;;chr3:111314186..111314204,-!p1@ZBED2!2.01!101.58!ZBED2;;chr6:19837592..19837621,+!p1@ID4!1.93!484.16!ID4;;chr2:122042770..122042785,-!p1@TFCP2L1!1.92!83.12!TFCP2L1;;chr10:94449703..94449718,+!p1@HHEX!1.58!136.33!HHEX;;chr14:36990416..36990438,-!p4@NKX2-1!1.58!36.66!NKX2-1;;chr20:62680984..62680999,-!p1@SOX18!1.52!41.82!SOX18;;chr1:151804244..151804310,-!p1@RORC!1.51!31.19!RORC;;chr8:40755333..40755352,-!p1@ZMAT4!1.47!28.58!ZMAT4;;chr1:209979467..209979494,-!p1@IRF6!1.46!30.81!IRF6;;chr1:40105299..40105326,-!p1@HEYL!1.46!27.62!HEYL;;chr17:53342311..53342400,+!p1@HLF!1.45!31.00!HLF;;chr11:113930425..113930471,+!p1@ZBTB16!1.44!38.25!ZBTB16;;chr1:214161272..214161322,+!p1@PROX1!1.41!34.31!PROX1;;chr19:20278043..20278054,+!p2@ZNF486!1.36!21.83!ZNF486;;chr1:170632285..170632309,+!p1@PRRX1!1.29!20.75!PRRX1;;chr18:45935720..45935772,-!p1@ZBTB7C!1.29!18.71!ZBTB7C;;chr17:80797886..80797906,-!p1@ZNF750!1.29!18.33!ZNF750;;chr12:54785074..54785122,-!p2@ZNF385A!1.26!26.16!ZNF385A;;chr6:28321971..28321995,-!p1@ZNF323!1.25!16.87!ZNF323;;chr7:63505799..63505904,+!p1@ZNF727!1.25!16.74!ZNF727;;chr13:37494365..37494381,-!p1@SMAD9!1.24!28.26!SMAD9;;chr12:52437488..52437507,+!p2@NR4A1!1.23!16.10!NR4A1;;chr8:102504651..102504683,+!p1@GRHL2!1.23!16.10!GRHL2;;chr21:39870339..39870443,-!p1@ERG!1.21!15.40!ERG;;chr2:85981107..85981120,+!p3@ATOH8!1.21!15.34!ATOH8;;chr12:115122005..115122016,-!p3@TBX3!1.20!17.76!TBX3;;chr14:36990398..36990415,-!p10@NKX2-1!1.20!15.02!NKX2-1;;chr18:53068911..53068935,-!p4@TCF4!1.18!16.10!TCF4;;chr4:149363494..149363543,-!p1@NR3C2!1.16!13.37!NR3C2;;chr20:18038521..18038571,-!p1@OVOL2!1.15!12.98!OVOL2;;chr19:20278012..20278034,+!p1@ZNF486!1.14!107.88!ZNF486;;chr12:26277956..26277980,-!p1@BHLHE41!1.14!46.40!BHLHE41;;chr3:114819124..114819200,-!p3@ZBTB20!1.14!29.60!ZBTB20;;chr7:88389004..88389019,+!p1@ZNF804B!1.14!12.67!ZNF804B;;chr9:114287433..114287513,+!p1@ZNF483!1.13!32.08!ZNF483;;chr13:37494275..37494304,-!p2@SMAD9!1.13!12.60!SMAD9;;chr11:113930291..113930339,+!p2@ZBTB16!1.12!19.99!ZBTB16;;chr11:113930401..113930422,+!p3@ZBTB16!1.11!12.03!ZBTB16;;chr1:201979743..201979762,+!p1@ELF3!1.11!11.84!ELF3;;chr9:100615546..100615558,+!p4@FOXE1!1.11!11.77!FOXE1;;chr12:115121962..115121987,-!p1@TBX3!1.10!98.08!TBX3;;chr19:22193731..22193751,-!p1@ZNF208!1.10!11.65!ZNF208;;chr11:125034640..125034655,+!p1@PKNOX2!1.10!11.58!PKNOX2;;chr21:44441260..44441273,+!p3@PKNOX1!1.09!11.27!PKNOX1;;chr1:61547894..61547968,+!p2@NFIA!1.08!32.59!NFIA;;chr1:61548069..61548102,+!p3@NFIA!1.07!25.97!NFIA;;chr2:178128552..178128574,-!p7@NFE2L2!1.07!15.98!NFE2L2;;chr12:54785054..54785072,-!p4@ZNF385A!1.07!12.09!ZNF385A;;chr3:126076242..126076257,-!p1@KLF15!1.04!12.60!KLF15;;chr4:149363475..149363492,-!p2@NR3C2!1.04!10.06!NR3C2;;chr13:37494248..37494260,-!p3@SMAD9!1.04!9.93!SMAD9;;chr16:51185318..51185348,-!p2@SALL1!1.03!9.61!SALL1;;chr11:47400078..47400106,-!p1@SPI1!1.02!9.48!SPI1;;chrX:106960285..106960299,-!p1@TSC22D3!1.01!249.75!TSC22D3;;chr14:36989427..36989442,-!p1@NKX2-1!1.01!9.17!NKX2-1;;chr16:79634624..79634642,-!p1@MAF!1.00!36.28!MAF;;chr2:85981073..85981091,+!p5@ATOH8!1.00!9.10!ATOH8;;chr3:111314230..111314241,-!p2@ZBED2!1.00!8.91!ZBED2;;chr20:39317868..39317884,-!p1@MAFB!0.99!105.97!MAFB;;chr9:73029018..73029042,-!p6@KLF9!0.99!11.65!KLF9;;chr2:68592406..68592424,+!p1@PLEK!0.99!8.78!PLEK;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.99!8.78!PEG3;;chr1:61548225..61548299,+!p1@NFIA!0.97!113.16!NFIA;;chr2:85980951..85981004,+!p1@ATOH8!0.97!13.88!ATOH8;;chr20:2673383..2673441,+!p1@EBF4!0.97!13.43!EBF4;;chr3:126076264..126076305,-!p2@KLF15!0.96!11.52!KLF15;;chr2:95963052..95963106,+!p1@KCNIP3!0.96!8.21!KCNIP3;;chr16:51185573..51185593,-!p3@SALL1!0.96!8.21!SALL1;;chr14:36989940..36989957,-!p2@NKX2-1!0.96!8.08!NKX2-1;;chr1:2985760..2985774,+!p1@PRDM16!0.95!7.96!PRDM16;;chr6:28321909..28321965,-!p3@ZNF323!0.95!7.83!ZNF323;;chr1:164528410..164528428,+!p1@PBX1!0.94!59.76!PBX1;;chr7:15726296..15726315,-!p1@MEOX2!0.94!7.64!MEOX2;;chr13:73633131..73633149,+!p1@KLF5!0.93!84.08!KLF5;;chr19:46801639..46801699,+!p1@HIF3A!0.93!7.51!HIF3A;;chr1:217250308..217250349,-!p9@ESRRG!0.93!7.51!ESRRG;;chrX:107018969..107019024,-!p6@TSC22D3!0.91!10.12!TSC22D3;;chr5:71803177..71803255,-!p1@ZNF366!0.91!7.19!ZNF366;;chr19:19729477..19729542,-!p1@PBX4!0.90!15.53!PBX4;;chr19:38085768..38085821,+!p1@ZNF540!0.90!10.50!ZNF540;;chr11:64764435..64764449,-!p1@BATF2!0.90!9.80!BATF2;;chr8:106330656..106330684,+!p1@ZFPM2!0.89!18.65!ZFPM2;;chr7:64023410..64023428,-!p2@ZNF680!0.89!11.01!ZNF680;;chr18:6414884..6414942,-!p1@L3MBTL4!0.89!8.53!L3MBTL4;;chr3:114173720..114173794,-!p6@ZBTB20!0.89!6.81!ZBTB20;;chr7:113726357..113726443,+!p1@FOXP2!0.88!11.65!FOXP2;;chr8:10588010..10588030,-!p1@SOX7!0.88!6.62!SOX7;;chr8:55370487..55370503,+!p1@SOX17!0.88!6.56!SOX17;;chr19:20748574..20748599,-!p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r20:18038486..18038520,-!p2@OVOL2!0.37!1.34!OVOL2;;chr9:73028786..73028797,-!p11@KLF9!0.37!1.34!KLF9;;chr8:106330515..106330525,+!p6@ZFPM2!0.37!1.34!ZFPM2;;chr8:106330823..106330836,+!p3@ZFPM2!0.37!1.34!ZFPM2;;chr16:79634464..79634493,-!p5@MAF!0.37!1.34!MAF;;chr18:53089538..53089578,-!p14@TCF4!0.37!1.34!TCF4;;chr19:20748614..20748617,-!p5@ZNF737!0.37!1.34!ZNF737;;chr10:31610110..31610159,+!p2@ZEB1!0.37!1.34!ZEB1;;chr12:3068634..3068656,+!p5@TEAD4!0.37!1.34!TEAD4;;chr22:29196547..29196563,-!p2@XBP1!0.36!77.01!XBP1;;chr7:92076740..92076834,+!p1@GATAD1!0.36!51.17!GATAD1;;chr1:14075903..14075940,+!p1@PRDM2!0.36!43.79!PRDM2;;chr2:27805880..27805967,+!p1@ZNF512!0.36!28.45!ZNF512;;chr19:40562072..40562143,-!p1@ZNF780B!0.36!18.27!ZNF780B;;chr6:41514305..41514359,+!p2@FOXP4!0.36!16.68!FOXP4;;chr12:80084768..80084821,-!p2@PAWR!0.36!13.68!PAWR;;chr19:52901094..52901134,+!p1@ZNF528!0.36!13.05!ZNF528;;chr17:47439568..47439641,-!p2@ZNF652!0.36!11.20!ZNF652;;chr3:69788576..69788648,+!p1@MITF!0.36!10.50!MITF;;chr7:149470641..149470694,-!p1@ZNF467!0.36!8.72!ZNF467;;chr19:12721513..12721572,-!p1@ZNF490!0.36!8.08!ZNF490;;chr19:58694742..58694800,+!p2@ZNF274!0.36!7.76!ZNF274;;chr19:53696587..53696633,-!p1@ZNF665!0.36!7.00!ZNF665;;chr4:47916613..47916640,-!p3@NFXL1!0.36!5.47!NFXL1;;chr3:44754126..44754171,+!p1@ZNF502!0.36!4.39!ZNF502;;chr19:58951496..58951539,-!p1@ZNF132!0.36!4.26!ZNF132;;chr5:76383070..76383117,-!p3@ZBED3!0.36!3.44!ZBED3;;chr6:1610293..1610310,+!p1@FOXC1!0.36!2.74!FOXC1;;chr3:168864315..168864339,-!p2@MECOM!0.36!2.67!MECOM;;chr19:12444491..12444517,-!p4@ZNF563!0.36!2.10!ZNF563;;chr16:73093174..73093209,-!p3@ZFHX3!0.36!2.04!ZFHX3;;chr9:132427972..132428056,+!p1@PRRX2!0.36!1.97!PRRX2;;chr3:71632811..71632825,-!p19@FOXP1!0.36!1.97!FOXP1;;chr7:44143997..44144008,+!p3@AEBP1!0.36!1.91!AEBP1;;chr1:23694556..23694584,-!p6@ZNF436!0.36!1.91!ZNF436;;chr10:8095593..8095625,+!p3@GATA3!0.36!1.65!GATA3;;chr10:111985777..111985788,+!p4@MXI1!0.36!1.27!MXI1;;chr11:120110844..120110861,+!p3@POU2F3!0.36!1.27!POU2F3;;chr1:170632310..170632321,+!p15@PRRX1!0.36!1.27!PRRX1;;chr1:214161854..214161892,+!p4@PROX1!0.36!1.27!PROX1;;chr15:80696666..80696700,+!p4@ARNT2!0.36!1.27!ARNT2;;chr19:20188831..20188844,+!p2@ZNF90!0.36!1.27!ZNF90;;chr1:211432700..211432753,+!p1@RCOR3!0.35!37.23!RCOR3;;chr7:6746529..6746591,-!p1@ZNF12!0.35!27.69!ZNF12;;chr19:35168567..35168620,+!p1@ZNF302!0.35!23.04!ZNF302;;chr6:33168126..33168180,-!p2@RXRB!0.35!21.07!RXRB;;chr17:40540484..40540537,-!p2@STAT3!0.35!18.84!STAT3;;chr19:21950362..21950388,-!p1@ZNF100!0.35!17.63!ZNF100;;chr22:21356378..21356422,-!p2@THAP7!0.35!17.25!THAP7;;chr3:141747459..141747475,-!p1@TFDP2!0.35!16.23!TFDP2;;chr17:40440481..40440550,+!p1@STAT5A!0.35!13.94!STAT5A;;chr19:35759424..35759454,+!p2@USF2!0.35!10.82!USF2;;chr9:125693757..125693818,-!p1@ZBTB26!0.35!8.34!ZBTB26;;chr9:116638565..116638606,+!p1@ZNF618!0.35!8.02!ZNF618;;chr19:40596828..40596855,-!p1@ZNF780A!0.35!7.89!ZNF780A;;chr9:115818951..115819011,-!p1@ZFP37!0.35!5.47!ZFP37;;chr5:139493727..139493766,+!p4@PURA!0.35!5.22!PURA;;chr17:41322281..41322328,-!p2@BRCA1!0.35!5.09!BRCA1;;chr1:153939955..153940009,+!p2@CREB3L4!0.35!3.95!CREB3L4;;chr6:157098579..157098634,+!p4@ARID1B!0.35!3.82!ARID1B;;chr17:7382911..7382932,-!p4@ZBTB4!0.35!3.76!ZBTB4;;chr15:31619535..31619569,+!p5@KLF13!0.35!2.93!KLF13;;chr8:71316428..71316459,-!p2@NCOA2!0.35!2.67!NCOA2;;chr9:32550965..32551031,-!p4@TOPORS!0.35!2.42!TOPORS;;chr19:12444519..12444537,-!p3@ZNF563!0.35!2.29!ZNF563;;chr3:44626359..44626387,+!p4@ZNF197!0.35!1.85!ZNF197;;chr19:48774586..48774670,+!p1@ZNF114!0.35!1.78!ZNF114;;chr5:92919100..92919135,+!p3@NR2F1!0.35!1.72!NR2F1;;chr9:2017365..2017380,+!p9@SMARCA2!0.35!1.72!SMARCA2;;chr13:73636252..73636307,+!p2@KLF5!0.35!1.59!KLF5;;chr16:88752889..88752921,-!p1@SNAI3!0.35!1.59!SNAI3;;chr10:38299546..38299686,+!p1@ZNF33A!0.34!28.32!ZNF33A;;chr14:64970494..64970578,-!p1@ZBTB25!0.34!19.35!ZBTB25;;chr9:20622478..20622525,-!p1@MLLT3!0.34!15.21!MLLT3;;chr16:1464688..1464728,-!p1@UNKL!0.34!13.05!UNKL;;chr5:139493665..139493718,+!p2@PURA!0.34!11.20!PURA;;chr19:52643169..52643199,-!p1@ZNF616!0.34!11.14!ZNF616;;chr19:58514129..58514205,-!p1@ZNF606!0.34!10.76!ZNF606;;chr16:68119324..68119364,+!p1@NFATC3!0.34!8.21!NFATC3;;chr19:38270215..38270251,-!p1@ZNF573!0.34!7.45!ZNF573;;chr19:56111680..56111716,+!p1@ZNF524!0.34!6.81!ZNF524;;chr16:71918033..71918101,-!p1@ZNF821!0.34!6.68!ZNF821;;chr19:37569314..37569381,+!p1@ZNF420!0.34!6.43!ZNF420;;chr19:12721760..12721778,+!p3@ZNF791!0.34!6.05!ZNF791;;chr19:11877838..11877915,+!p1@ZNF441!0.34!5.54!ZNF441;;chr19:58446721..58446779,-!p1@ZNF418!0.34!4.77!ZNF418;;chr19:38085633..38085706,-!p1@ZNF571!0.34!4.39!ZNF571;;chr19:59084922..59084947,-!p3@MZF1!0.34!3.76!MZF1;;chr19:24269949..24269969,+!p3@ZNF254!0.34!3.50!ZNF254;;chr14:64970427..64970457,+!p3@ZBTB1!0.34!3.25!ZBTB1;;chr4:87857433..87857472,+!p9@AFF1!0.34!2.80!AFF1;;chr19:49140572..49140594,-!p2@DBP!0.34!2.42!DBP;;chr18:51751066..51751077,-!p6@MBD2!0.34!2.23!MBD2;;chr19: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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002046;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008814;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009722
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0007123,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thyroid%252c%2520adult%252c%2520pool1.CNhs10634.10028-101E1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thyroid%252c%2520adult%252c%2520pool1.CNhs10634.10028-101E1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thyroid%252c%2520adult%252c%2520pool1.CNhs10634.10028-101E1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thyroid%252c%2520adult%252c%2520pool1.CNhs10634.10028-101E1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thyroid%252c%2520adult%252c%2520pool1.CNhs10634.10028-101E1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10028-101E1
 |is_a=EFO:0002091;;FF:0010028
 |is_obsolete=
+|library_id=CNhs10634
+|library_id_phase_based=2:CNhs10634
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10028
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10028
 |name=thyroid, adult, pool1
 |namespace=FANTOM5
@@ Line 45: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10634,LSID657,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:AM6000 Lot:0910061 -19
@@ Line 57: / Line 76: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=101E1
+|rna_tube_id=1.01E+03
 |rna_weight_ug=10
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 81: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10028-101E1;search_select_hide=table117:FF:10028-101E1
 }}

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FF:10028-101E1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:15, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0