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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004809
|DRA_sample_Accession=CAGE@SAMD00004809
|accession_numbers=CAGE;DRX008619;DRR009491;DRZ000916;DRZ002301
|accession_numbers=CAGE;DRX008619;DRR009491;DRZ000916;DRZ002301;DRZ012266;DRZ013651
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|def=
|def=
|expression_enrichment_score=chr12:52437488..52437507,+!p2@NR4A1!2.22!164.98!NR4A1;;chr1:40105299..40105326,-!p1@HEYL!2.09!123.33!HEYL;;chr2:19558373..19558392,-!p1@OSR1!2.00!263.01!OSR1;;chr20:30433396..30433414,-!p1@FOXS1!1.94!85.28!FOXS1;;chr11:113930425..113930471,+!p1@ZBTB16!1.83!94.44!ZBTB16;;chr7:44143978..44143989,+!p2@AEBP1!1.71!89.06!AEBP1;;chr7:44143925..44143970,+!p1@AEBP1!1.70!1037.29!AEBP1;;chr19:46801639..46801699,+!p1@HIF3A!1.66!44.83!HIF3A;;chr11:34642612..34642646,+!p1@EHF!1.66!44.23!EHF;;chr4:174451370..174451387,-!p1@HAND2!1.66!44.23!HAND2;;chr6:1610293..1610310,+!p1@FOXC1!1.65!70.93!FOXC1;;chr16:86600426..86600441,+!p1@FOXC2!1.63!99.42!FOXC2;;chr12:52445218..52445237,+!p1@NR4A1!1.62!485.17!NR4A1;;chr6:126070769..126070801,+!p1@HEY2!1.62!46.62!HEY2;;chr1:201979703..201979721,+!p2@ELF3!1.62!40.45!ELF3;;chr6:19837592..19837621,+!p1@ID4!1.61!230.73!ID4;;chr20:50179368..50179392,-!p2@NFATC2!1.60!50.21!NFATC2;;chr17:53342311..53342400,+!p1@HLF!1.57!41.64!HLF;;chr5:122424955..122424988,+!p2@PRDM6!1.57!36.46!PRDM6;;chr5:122424918..122424944,+!p1@PRDM6!1.56!35.27!PRDM6;;chr20:62680984..62680999,-!p1@SOX18!1.55!45.23!SOX18;;chr7:44143997..44144008,+!p3@AEBP1!1.54!42.24!AEBP1;;chr18:19749541..19749557,+!p1@GATA6!1.45!83.68!GATA6;;chr5:158526917..158526932,-!p1@EBF1!1.45!65.75!EBF1;;chr21:40032558..40032578,-!p5@ERG!1.43!25.90!ERG;;chr3:21792682..21792720,-!p1@ZNF385D!1.41!24.91!ZNF385D;;chr4:174450089..174450153,-!p2@HAND2!1.41!24.71!HAND2;;chr19:54058073..54058088,+!p1@ZNF331!1.40!24.31!ZNF331;;chr1:201979743..201979762,+!p1@ELF3!1.38!22.91!ELF3;;chr19:45971246..45971265,+!p1@FOSB!1.37!399.89!FOSB;;chr1:61548374..61548415,+!p4@NFIA!1.36!40.65!NFIA;;chr1:170632285..170632309,+!p1@PRRX1!1.36!24.51!PRRX1;;chr3:169381420..169381535,-!p1@MECOM!1.35!24.91!MECOM;;chr6:85474299..85474324,-!p1@TBX18!1.33!35.86!TBX18;;chr1:61548225..61548299,+!p1@NFIA!1.32!254.04!NFIA;;chr19:54041669..54041697,+!p2@ZNF331!1.32!19.73!ZNF331;;chrY:21906594..21906622,-!p1@KDM5D!1.31!19.53!KDM5D;;chr9:132427883..132427951,+!p2@PRRX2!1.31!19.33!PRRX2;;chr11:113930401..113930422,+!p3@ZBTB16!1.31!19.33!ZBTB16;;chr1:2985760..2985774,+!p1@PRDM16!1.30!19.13!PRDM16;;chr3:24536253..24536328,-!p1@THRB!1.29!34.47!THRB;;chr9:102584159..102584174,+!p2@NR4A3!1.29!32.68!NR4A3;;chr17:38256822..38256851,-!p1@NR1D1!1.28!139.27!NR1D1;;chr9:132427972..132428056,+!p1@PRRX2!1.28!23.31!PRRX2;;chr18:19749517..19749531,+!p3@GATA6!1.27!31.08!GATA6;;chr18:77155922..77155939,+!p1@NFATC1!1.26!46.62!NFATC1;;chr8:25902876..25902936,-!p1@EBF2!1.26!17.33!EBF2;;chr14:75745523..75745537,+!p1@FOS!1.24!1930.91!FOS;;chrX:106960180..106960197,-!p2@TSC22D3!1.24!61.57!TSC22D3;;chr1:61548069..61548102,+!p3@NFIA!1.24!39.05!NFIA;;chr11:113930291..113930339,+!p2@ZBTB16!1.23!25.70!ZBTB16;;chr3:181429704..181429722,+!p1@SOX2!1.23!15.94!SOX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.22!40.45!ZFPM2;;chr2:97202480..97202499,+!p1@ARID5A!1.21!150.43!ARID5A;;chr3:126076242..126076257,-!p1@KLF15!1.21!18.93!KLF15;;chr2:157189180..157189290,-!p1@NR4A2!1.20!77.31!NR4A2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.20!14.94!TFCP2L1;;chr8:55370487..55370503,+!p1@SOX17!1.19!14.35!SOX17;;chr16:85932760..85932775,+!p1@IRF8!1.19!14.35!IRF8;;chr1:2985726..2985752,+!p2@PRDM16!1.19!14.35!PRDM16;;chr21:39870339..39870443,-!p1@ERG!1.19!14.35!ERG;;chr3:21792585..21792625,-!p2@ZNF385D!1.16!15.14!ZNF385D;;chr11:47400078..47400106,-!p1@SPI1!1.16!13.35!SPI1;;chr21:40032581..40032605,-!p4@ERG!1.15!13.15!ERG;;chr3:24536485..24536500,-!p3@THRB!1.14!12.95!THRB;;chr3:71294213..71294240,-!p30@FOXP1!1.14!12.75!FOXP1;;chr5:158527104..158527135,-!p4@EBF1!1.14!12.75!EBF1;;chr11:125034640..125034655,+!p1@PKNOX2!1.13!12.35!PKNOX2;;chr5:137804484..137804498,+!p2@EGR1!1.12!49.02!EGR1;;chr12:26277956..26277980,-!p1@BHLHE41!1.12!43.83!BHLHE41;;chr1:212782094..212782109,+!p1@ATF3!1.11!324.97!ATF3;;chr15:42749722..42749739,-!p2@ZFP106!1.11!21.52!ZFP106;;chr18:45935720..45935772,-!p1@ZBTB7C!1.11!11.95!ZBTB7C;;chr5:88178983..88179012,-!p1@MEF2C!1.10!89.86!MEF2C;;chr16:86600870..86600921,+!p2@FOXC2!1.10!11.56!FOXC2;;chr3:169381183..169381205,-!p4@MECOM!1.10!11.56!MECOM;;chr4:174451350..174451363,-!p3@HAND2!1.10!11.56!HAND2;;chr18:19749386..19749404,+!p2@GATA6!1.09!16.34!GATA6;;chr20:51588873..51588953,+!p1@TSHZ2!1.09!15.14!TSHZ2;;chr22:41763452..41763466,+!p2@TEF!1.09!11.36!TEF;;chr8:22550982..22550999,-!p1@EGR3!1.08!31.08!EGR3;;chr7:113726357..113726443,+!p1@FOXP2!1.08!19.13!FOXP2;;chr16:73093174..73093209,-!p3@ZFHX3!1.08!14.94!ZFHX3;;chr12:26277817..26277863,-!p2@BHLHE41!1.08!14.94!BHLHE41;;chr14:75746722..75746777,+!p2@FOS!1.08!14.15!FOS;;chr8:10588010..10588030,-!p1@SOX7!1.08!11.16!SOX7;;chr6:34524093..34524135,-!p1@SPDEF!1.08!10.96!SPDEF;;chr1:10754477..10754517,-!p1@CASZ1!1.07!17.93!CASZ1;;chr21:40032884..40032915,-!p2@ERG!1.07!10.76!ERG;;chr1:61547894..61547968,+!p2@NFIA!1.06!30.88!NFIA;;chr17:38256799..38256815,-!p3@NR1D1!1.06!19.33!NR1D1;;chr2:145277882..145277967,-!p3@ZEB2!1.06!18.33!ZEB2;;chr3:126076264..12607630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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0004872,UBERON:0006965,UBERON:0010316
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0004872,UBERON:0006965,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/aorta%252c%2520adult%252c%2520pool1.CNhs11760.10052-101G7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/aorta%252c%2520adult%252c%2520pool1.CNhs11760.10052-101G7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/aorta%252c%2520adult%252c%2520pool1.CNhs11760.10052-101G7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/aorta%252c%2520adult%252c%2520pool1.CNhs11760.10052-101G7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/aorta%252c%2520adult%252c%2520pool1.CNhs11760.10052-101G7.hg38.nobarcode.ctss.bed.gz
|id=FF:10052-101G7
|id=FF:10052-101G7
|is_a=EFO:0002091;;FF:0010052
|is_a=EFO:0002091;;FF:0010052
Line 46: Line 52:
|library_id=CNhs11760
|library_id=CNhs11760
|library_id_phase_based=2:CNhs11760
|library_id_phase_based=2:CNhs11760
|name="aorta, adult, pool1"
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10052
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10052
|name=aorta, adult, pool1
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage="CNhs11760,LSID820,release009,COMPLETED"
|profile_hcage=CNhs11760,LSID820,release009,COMPLETED
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=",,,"
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 101:
|top_motifs=SRF:3.19810487178;ZIC1..3:3.18074717151;HMX1:2.74687626185;TBP:2.55609344912;TFAP2{A,C}:2.55120743481;GCM1,2:2.49336456426;GATA4:2.48363327819;XBP1:2.31936278872;TLX1..3_NFIC{dimer}:2.30621963538;TFAP4:2.21655626938;SPZ1:2.19415594443;MAZ:2.17529852778;PRDM1:2.1711885895;NKX2-1,4:2.09388131349;MEF2{A,B,C,D}:2.02157153317;TFCP2:1.98623359002;NFATC1..3:1.93447808859;SP1:1.91363373555;HBP1_HMGB_SSRP1_UBTF:1.79142913318;ZNF423:1.73496116201;ZNF384:1.72128888138;PATZ1:1.70113770736;MZF1:1.68010261673;AR:1.6727682217;MTE{core}:1.67231699652;TFAP2B:1.64063879197;TOPORS:1.63019579694;EP300:1.6195603118;ATF6:1.57413952101;IKZF1:1.51077578187;FOXO1,3,4:1.49942315803;HIC1:1.49251495854;STAT2,4,6:1.48205489394;MTF1:1.46101531109;FOX{D1,D2}:1.44530437964;T:1.43287487834;GTF2I:1.40911463037;GTF2A1,2:1.38883012099;MED-1{core}:1.38751833333;MYBL2:1.38324662538;TLX2:1.34825032683;RREB1:1.31474819555;FOXP1:1.29176354317;EGR1..3:1.27531934686;PITX1..3:1.24918982219;FOX{I1,J2}:1.24790868923;MYFfamily:1.21457777575;FOXL1:1.20546915524;SMAD1..7,9:1.192306693;XCPE1{core}:1.19041585144;RBPJ:1.15473996238;EBF1:1.14848872339;PAX5:1.12146993566;SOX5:1.11971527004;ALX4:1.0621224257;TEAD1:1.02182209582;RXRA_VDR{dimer}:0.993072617624;NR3C1:0.982661457912;ZNF238:0.97541128744;BPTF:0.948309073161;NR6A1:0.936348625302;BREu{core}:0.877072685012;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.870649322554;ZBTB6:0.863567791184;ATF2:0.844297621645;POU6F1:0.80728156643;LMO2:0.800852916094;KLF4:0.756854080978;ZFP161:0.742851070004;GLI1..3:0.718679388507;SNAI1..3:0.712793945129;TGIF1:0.682736775673;NR1H4:0.674346391695;UFEwm:0.669532459377;FOXA2:0.668829920799;GFI1B:0.655707795278;RXR{A,B,G}:0.594516387257;ATF4:0.561928898171;POU2F1..3:0.515771989187;POU5F1:0.512449325845;NFIL3:0.49553291759;JUN:0.438784730289;NHLH1,2:0.434184353338;HSF1,2:0.413991434834;ETS1,2:0.412808673337;IRF7:0.410604747074;HES1:0.406203657144;CREB1:0.398449981447;RFX1:0.386931420661;IKZF2:0.386153871005;REST:0.370750865661;RFX2..5_RFXANK_RFXAP:0.309337686877;ESRRA:0.284417471958;HAND1,2:0.233193360844;HIF1A:0.208316422617;ESR1:0.199980938814;AHR_ARNT_ARNT2:0.170324110571;IRF1,2:0.162888456229;STAT1,3:0.139747205536;ZBTB16:0.102507230977;ARID5B:0.0622101602747;GZF1:0.0269099355949;SPI1:0.0173367312947;HOX{A6,A7,B6,B7}:0.00755748580755;TP53:0.00245777029283;ZNF148:0.000308175521759;MAFB:-0.0123676692389;SREBF1,2:-0.0243790891146;CEBPA,B_DDIT3:-0.0695351100476;SPIB:-0.0724565881028;EVI1:-0.10587340448;NKX3-1:-0.106287576663;GATA6:-0.121822246731;VSX1,2:-0.12295628816;TBX4,5:-0.152794808381;HNF1A:-0.164711446252;ZEB1:-0.167222226018;SOX2:-0.217951935249;MYOD1:-0.226742188255;CDC5L:-0.229946057337;FOSL2:-0.23273356581;AIRE:-0.235421858785;NFE2L1:-0.255036710366;ATF5_CREB3:-0.258460070018;SOX{8,9,10}:-0.274855589248;FOXM1:-0.284918316984;ADNP_IRX_SIX_ZHX:-0.290909606091;FOXD3:-0.294071613906;RUNX1..3:-0.315832592566;NANOG{mouse}:-0.327000208809;POU3F1..4:-0.345979899231;NKX3-2:-0.351914549847;HNF4A_NR2F1,2:-0.361623226874;ELF1,2,4:-0.366807870592;LHX3,4:-0.375282854489;TEF:-0.379776843634;NFKB1_REL_RELA:-0.407564105616;PAX1,9:-0.418295701805;DBP:-0.435853740806;DMAP1_NCOR{1,2}_SMARC:-0.464266472634;FOX{F1,F2,J1}:-0.478058503298;FOXN1:-0.483288320631;TAL1_TCF{3,4,12}:-0.518576027741;HMGA1,2:-0.52220686485;TFDP1:-0.524874743053;FOXQ1:-0.525813997687;FOS_FOS{B,L1}_JUN{B,D}:-0.545673822093;BACH2:-0.579143650204;POU1F1:-0.586832373187;NFE2:-0.624904050546;HLF:-0.629789706236;CUX2:-0.635729535691;NANOG:-0.667807399473;PAX3,7:-0.696325803462;SOX17:-0.698531891217;NFY{A,B,C}:-0.705834550287;NFE2L2:-0.716709659817;PAX2:-0.737307102549;CDX1,2,4:-0.810796311471;PAX6:-0.909431853688;NR5A1,2:-0.924012096553;GFI1:-0.934742331895;PPARG:-0.939636466119;HOX{A5,B5}:-0.943002625504;ZNF143:-0.951018661999;ONECUT1,2:-0.96557002425;NKX2-2,8:-0.986772176984;NKX2-3_NKX2-5:-1.02254502626;OCT4_SOX2{dimer}:-1.0377401379;PRRX1,2:-1.05123171917;NRF1:-1.05856982563;RORA:-1.08490123289;FOXP3:-1.1033771477;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.11870768182;bHLH_family:-1.13036630212;NFIX:-1.14879880457;PBX1:-1.15352378567;HOX{A4,D4}:-1.16737745927;NKX6-1,2:-1.18123324497;LEF1_TCF7_TCF7L1,2:-1.33646834046;PAX4:-1.41959046315;E2F1..5:-1.44231262109;CRX:-1.51312180259;EN1,2:-1.62466840804;ALX1:-1.63399353051;HOXA9_MEIS1:-1.6400075841;PAX8:-1.70321793439;PDX1:-1.73311892916;STAT5{A,B}:-1.76302015302;MYB:-1.78844510544;ELK1,4_GABP{A,B1}:-2.0607637223;YY1:-2.38222353895
|top_motifs=SRF:3.19810487178;ZIC1..3:3.18074717151;HMX1:2.74687626185;TBP:2.55609344912;TFAP2{A,C}:2.55120743481;GCM1,2:2.49336456426;GATA4:2.48363327819;XBP1:2.31936278872;TLX1..3_NFIC{dimer}:2.30621963538;TFAP4:2.21655626938;SPZ1:2.19415594443;MAZ:2.17529852778;PRDM1:2.1711885895;NKX2-1,4:2.09388131349;MEF2{A,B,C,D}:2.02157153317;TFCP2:1.98623359002;NFATC1..3:1.93447808859;SP1:1.91363373555;HBP1_HMGB_SSRP1_UBTF:1.79142913318;ZNF423:1.73496116201;ZNF384:1.72128888138;PATZ1:1.70113770736;MZF1:1.68010261673;AR:1.6727682217;MTE{core}:1.67231699652;TFAP2B:1.64063879197;TOPORS:1.63019579694;EP300:1.6195603118;ATF6:1.57413952101;IKZF1:1.51077578187;FOXO1,3,4:1.49942315803;HIC1:1.49251495854;STAT2,4,6:1.48205489394;MTF1:1.46101531109;FOX{D1,D2}:1.44530437964;T:1.43287487834;GTF2I:1.40911463037;GTF2A1,2:1.38883012099;MED-1{core}:1.38751833333;MYBL2:1.38324662538;TLX2:1.34825032683;RREB1:1.31474819555;FOXP1:1.29176354317;EGR1..3:1.27531934686;PITX1..3:1.24918982219;FOX{I1,J2}:1.24790868923;MYFfamily:1.21457777575;FOXL1:1.20546915524;SMAD1..7,9:1.192306693;XCPE1{core}:1.19041585144;RBPJ:1.15473996238;EBF1:1.14848872339;PAX5:1.12146993566;SOX5:1.11971527004;ALX4:1.0621224257;TEAD1:1.02182209582;RXRA_VDR{dimer}:0.993072617624;NR3C1:0.982661457912;ZNF238:0.97541128744;BPTF:0.948309073161;NR6A1:0.936348625302;BREu{core}:0.877072685012;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.870649322554;ZBTB6:0.863567791184;ATF2:0.844297621645;POU6F1:0.80728156643;LMO2:0.800852916094;KLF4:0.756854080978;ZFP161:0.742851070004;GLI1..3:0.718679388507;SNAI1..3:0.712793945129;TGIF1:0.682736775673;NR1H4:0.674346391695;UFEwm:0.669532459377;FOXA2:0.668829920799;GFI1B:0.655707795278;RXR{A,B,G}:0.594516387257;ATF4:0.561928898171;POU2F1..3:0.515771989187;POU5F1:0.512449325845;NFIL3:0.49553291759;JUN:0.438784730289;NHLH1,2:0.434184353338;HSF1,2:0.413991434834;ETS1,2:0.412808673337;IRF7:0.410604747074;HES1:0.406203657144;CREB1:0.398449981447;RFX1:0.386931420661;IKZF2:0.386153871005;REST:0.370750865661;RFX2..5_RFXANK_RFXAP:0.309337686877;ESRRA:0.284417471958;HAND1,2:0.233193360844;HIF1A:0.208316422617;ESR1:0.199980938814;AHR_ARNT_ARNT2:0.170324110571;IRF1,2:0.162888456229;STAT1,3:0.139747205536;ZBTB16:0.102507230977;ARID5B:0.0622101602747;GZF1:0.0269099355949;SPI1:0.0173367312947;HOX{A6,A7,B6,B7}:0.00755748580755;TP53:0.00245777029283;ZNF148:0.000308175521759;MAFB:-0.0123676692389;SREBF1,2:-0.0243790891146;CEBPA,B_DDIT3:-0.0695351100476;SPIB:-0.0724565881028;EVI1:-0.10587340448;NKX3-1:-0.106287576663;GATA6:-0.121822246731;VSX1,2:-0.12295628816;TBX4,5:-0.152794808381;HNF1A:-0.164711446252;ZEB1:-0.167222226018;SOX2:-0.217951935249;MYOD1:-0.226742188255;CDC5L:-0.229946057337;FOSL2:-0.23273356581;AIRE:-0.235421858785;NFE2L1:-0.255036710366;ATF5_CREB3:-0.258460070018;SOX{8,9,10}:-0.274855589248;FOXM1:-0.284918316984;ADNP_IRX_SIX_ZHX:-0.290909606091;FOXD3:-0.294071613906;RUNX1..3:-0.315832592566;NANOG{mouse}:-0.327000208809;POU3F1..4:-0.345979899231;NKX3-2:-0.351914549847;HNF4A_NR2F1,2:-0.361623226874;ELF1,2,4:-0.366807870592;LHX3,4:-0.375282854489;TEF:-0.379776843634;NFKB1_REL_RELA:-0.407564105616;PAX1,9:-0.418295701805;DBP:-0.435853740806;DMAP1_NCOR{1,2}_SMARC:-0.464266472634;FOX{F1,F2,J1}:-0.478058503298;FOXN1:-0.483288320631;TAL1_TCF{3,4,12}:-0.518576027741;HMGA1,2:-0.52220686485;TFDP1:-0.524874743053;FOXQ1:-0.525813997687;FOS_FOS{B,L1}_JUN{B,D}:-0.545673822093;BACH2:-0.579143650204;POU1F1:-0.586832373187;NFE2:-0.624904050546;HLF:-0.629789706236;CUX2:-0.635729535691;NANOG:-0.667807399473;PAX3,7:-0.696325803462;SOX17:-0.698531891217;NFY{A,B,C}:-0.705834550287;NFE2L2:-0.716709659817;PAX2:-0.737307102549;CDX1,2,4:-0.810796311471;PAX6:-0.909431853688;NR5A1,2:-0.924012096553;GFI1:-0.934742331895;PPARG:-0.939636466119;HOX{A5,B5}:-0.943002625504;ZNF143:-0.951018661999;ONECUT1,2:-0.96557002425;NKX2-2,8:-0.986772176984;NKX2-3_NKX2-5:-1.02254502626;OCT4_SOX2{dimer}:-1.0377401379;PRRX1,2:-1.05123171917;NRF1:-1.05856982563;RORA:-1.08490123289;FOXP3:-1.1033771477;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.11870768182;bHLH_family:-1.13036630212;NFIX:-1.14879880457;PBX1:-1.15352378567;HOX{A4,D4}:-1.16737745927;NKX6-1,2:-1.18123324497;LEF1_TCF7_TCF7L1,2:-1.33646834046;PAX4:-1.41959046315;E2F1..5:-1.44231262109;CRX:-1.51312180259;EN1,2:-1.62466840804;ALX1:-1.63399353051;HOXA9_MEIS1:-1.6400075841;PAX8:-1.70321793439;PDX1:-1.73311892916;STAT5{A,B}:-1.76302015302;MYB:-1.78844510544;ELK1,4_GABP{A,B1}:-2.0607637223;YY1:-2.38222353895
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10052-101G7;search_select_hide=table117:FF:10052-101G7
}}
}}

Latest revision as of 12:17, 3 June 2020

Name:aorta, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs11760
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stage27-45 years old adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number9052725A
catalog numberCat:636546
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004809
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11760 CAGE DRX008619 DRR009491
Accession ID Hg19

Library idBAMCTSS
CNhs11760 DRZ000916 DRZ002301
Accession ID Hg38

Library idBAMCTSS
CNhs11760 DRZ012266 DRZ013651
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.129
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.383
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.414
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.0789
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0789
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0731
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.304
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0288
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0789
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0789
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.0348
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.146
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.119
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.133
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.187
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.3
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0789
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.321
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.112
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.793
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.00595
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.133
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0789
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0644
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0789
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung1.063
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.343
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.3
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.256
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.461
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0.204
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.342
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0789
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0791
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0885
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.204
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0711
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0789
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0789
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0789
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.146
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.629
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.511
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.579
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.379
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal1.219
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0.0789
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0789
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.175
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.255
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0789
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0193
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0625
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.255
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.112
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.642
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.146
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.255
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0789
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0392
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.414
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0.342
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11760

Jaspar motifP-value
MA0002.20.0144
MA0003.10.478
MA0004.10.0278
MA0006.10.41
MA0007.10.279
MA0009.10.398
MA0014.10.295
MA0017.10.137
MA0018.20.367
MA0019.10.494
MA0024.10.0029
MA0025.10.43
MA0027.10.444
MA0028.18.13921e-8
MA0029.10.294
MA0030.10.0819
MA0031.10.337
MA0035.20.0503
MA0038.10.371
MA0039.20.83
MA0040.10.446
MA0041.10.657
MA0042.10.826
MA0043.10.736
MA0046.10.266
MA0047.20.313
MA0048.10.308
MA0050.10.884
MA0051.10.277
MA0052.12.93422e-9
MA0055.10.0023
MA0057.10.95
MA0058.10.0046
MA0059.16.74476e-4
MA0060.14.57177e-4
MA0061.10.00175
MA0062.21.84257e-11
MA0065.20.0245
MA0066.10.00508
MA0067.10.467
MA0068.10.0123
MA0069.10.694
MA0070.10.476
MA0071.10.0645
MA0072.10.0225
MA0073.10.675
MA0074.10.538
MA0076.11.67904e-10
MA0077.10.756
MA0078.10.287
MA0079.20.281
MA0080.20.0117
MA0081.10.00915
MA0083.18.08491e-9
MA0084.10.78
MA0087.10.698
MA0088.10.00724
MA0090.10.0296
MA0091.10.883
MA0092.10.769
MA0093.10.0155
MA0099.22.0959e-13
MA0100.10.0095
MA0101.10.0204
MA0102.20.344
MA0103.10.599
MA0104.22.21639e-4
MA0105.14.91241e-7
MA0106.10.0422
MA0107.10.0115
MA0108.21.70121e-22
MA0111.10.563
MA0112.20.0904
MA0113.10.839
MA0114.10.014
MA0115.10.294
MA0116.10.00414
MA0117.10.325
MA0119.10.668
MA0122.10.476
MA0124.10.954
MA0125.10.77
MA0131.10.429
MA0135.10.874
MA0136.16.22399e-7
MA0137.20.141
MA0138.20.139
MA0139.10.185
MA0140.10.00439
MA0141.10.0168
MA0142.10.0968
MA0143.10.901
MA0144.10.16
MA0145.10.516
MA0146.10.36
MA0147.16.77169e-5
MA0148.10.332
MA0149.10.0428
MA0150.19.9117e-5
MA0152.10.284
MA0153.10.512
MA0154.10.102
MA0155.10.727
MA0156.13.30847e-7
MA0157.10.982
MA0159.10.159
MA0160.10.0313
MA0162.10.915
MA0163.18.55747e-9
MA0164.10.705
MA0258.10.0729
MA0259.10.0325



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11760

Novel motifP-value
10.0211
100.0577
1000.149
1010.953
1020.418
1030.024
1040.358
1050.486
1060.625
1070.0849
1080.538
1090.024
110.132
1100.127
1110.0953
1120.912
1130.0592
1140.0995
1150.147
1160.274
1170.0156
1180.0292
1190.816
120.482
1200.225
1210.644
1220.145
1230.606
1240.307
1250.092
1260.507
1270.325
1280.228
1290.0353
130.0261
1300.449
1310.516
1320.01
1330.00218
1340.107
1350.303
1360.404
1370.453
1380.995
1390.704
140.963
1400.812
1410.245
1420.238
1430.0196
1440.707
1450.527
1460.361
1470.603
1480.374
1490.34
150.016
1500.577
1510.878
1520.443
1530.734
1540.708
1550.313
1560.692
1570.64
1580.424
1590.567
160.349
1600.768
1610.99
1620.958
1630.439
1640.0994
1650.742
1660.091
1670.0473
1680.846
1690.872
170.694
180.014
190.331
20.0468
200.105
210.395
220.863
230.241
240.133
250.386
260.164
270.848
280.7
290.00228
30.157
300.0504
310.834
320.674
330.109
340.328
350.154
360.00777
370.178
380.732
390.153
40.324
400.0658
410.06
420.178
430.2
440.822
450.408
460.149
470.0634
480.135
490.151
50.286
500.475
510.389
520.12
530.371
540.904
550.946
560.878
570.205
580.717
590.658
60.714
600.583
610.313
620.532
630.974
640.248
650.75
667.70921e-4
670.8
680.122
690.689
70.274
700.134
710.0238
720.338
730.266
740.469
750.00822
760.0205
770.0867
780.0147
790.393
80.205
800.6
810.657
820.9
830.922
840.867
850.252
860.775
870.00973
880.78
890.642
90.596
900.0159
910.496
920.522
930.00703
940.0144
950.00499
960.636
970.999
980.12
990.892



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11760


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010052 (human aorta - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0006965 (vascular cord)
UBERON:0010316 (germ layer / neural crest)

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