FF:10055-101H1: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005818 | ||
|accession_numbers=CAGE;DRX008757;DRR009629;DRZ001054;DRZ002439;DRZ012404;DRZ013789 | |||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0005795,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0002050,UBERON:0005423,UBERON:0001062 | ||
| | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010055 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.20!157.88!PEG3;;chr7:27224842..27224872,-!p1@HOXA11!2.08!118.00!HOXA11;;chr19:46801639..46801699,+!p1@HIF3A!1.94!87.08!HIF3A;;chr4:174451370..174451387,-!p1@HAND2!1.91!80.16!HAND2;;chr7:27224795..27224840,-!p2@HOXA11!1.89!76.50!HOXA11;;chr6:152128810..152128827,+!p2@ESR1!1.82!64.70!ESR1;;chr15:57511609..57511651,+!p2@TCF12!1.80!102.94!TCF12;;chr8:55370487..55370503,+!p1@SOX17!1.79!60.63!SOX17;;chr19:46800289..46800327,+!p2@HIF3A!1.78!58.59!HIF3A;;chr4:57547454..57547469,-!p1@HOPX!1.77!57.78!HOPX;;chr9:77112244..77112262,+!p1@RORB!1.73!59.00!RORB;;chr5:134369879..134369898,-!p2@PITX1!1.73!52.49!PITX1;;chr13:72441315..72441454,-!p1@DACH1!1.72!101.32!DACH1;;chr10:119302232..119302265,+!p1@EMX2!1.72!51.68!EMX2;;chr7:96654133..96654150,-!p1@DLX5!1.67!45.98!DLX5;;chr7:27192185..27192209,-!p1@HOXA3!1.66!45.17!HOXA3;;chr11:32457075..32457095,-!p1@WT1!1.63!41.50!WT1;;chr17:80797886..80797906,-!p1@ZNF750!1.63!41.50!ZNF750;;chr1:40105299..40105326,-!p1@HEYL!1.62!41.10!HEYL;;chr6:134210243..134210257,+!p1@TCF21!1.59!37.84!TCF21;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.40!ZBED1;;chr11:34642612..34642646,+!p1@EHF!1.52!32.14!EHF;;chr8:99956662..99956684,+!p1@OSR2!1.49!45.17!OSR2;;chr2:27371879..27371907,+!p1@TCF23!1.49!30.11!TCF23;;chr7:27213893..27213954,-!p1@HOXA10!1.48!28.89!HOXA10;;chr15:96873984..96873999,+!p3@NR2F2!1.47!201.01!NR2F2;;chr2:176981499..176981522,+!p2@HOXD10!1.46!28.08!HOXD10;;chr7:27239703..27239715,-!p1@HOXA13!1.45!27.26!HOXA13;;chr17:1959369..1959388,+!p2@HIC1!1.44!68.77!HIC1;;chr1:170633348..170633399,+!p2@PRRX1!1.40!32.96!PRRX1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.40!24.01!TFCP2L1;;chr20:62680984..62680999,-!p1@SOX18!1.39!31.33!SOX18;;chr3:128212033..128212051,-!p1@GATA2!1.38!23.19!GATA2;;chr6:152126790..152126828,+!p3@ESR1!1.38!22.79!ESR1;;chr2:177001290..177001315,+!p1@HOXD3!1.37!22.38!HOXD3;;chr2:66662281..66662308,+!p1@MEIS1!1.36!74.46!MEIS1;;chr2:166326200..166326216,+!p1@CSRNP3!1.36!31.74!CSRNP3;;chr21:39870339..39870443,-!p1@ERG!1.35!21.57!ERG;;chr10:119302268..119302282,+!p4@EMX2!1.35!21.16!EMX2;;chr10:119302508..119302559,+!p5@EMX2!1.35!21.16!EMX2;;chr1:209979467..209979494,-!p1@IRF6!1.33!22.79!IRF6;;chr5:158526917..158526932,-!p1@EBF1!1.31!47.61!EBF1;;chr16:79634595..79634620,-!p2@MAF!1.31!34.99!MAF;;chr13:72441074..72441172,-!p2@DACH1!1.31!19.53!DACH1;;chr2:66662396..66662407,+!p4@MEIS1!1.31!19.53!MEIS1;;chr15:96874012..96874042,+!p2@NR2F2!1.30!167.23!NR2F2;;chr2:66662895..66662907,+!p3@MEIS1!1.29!22.79!MEIS1;;chr16:51185172..51185197,-!p1@SALL1!1.29!18.72!SALL1;;chr6:152126830..152126847,+!p4@ESR1!1.29!18.72!ESR1;;chr7:27239740..27239759,-!p2@HOXA13!1.29!18.72!HOXA13;;chr18:53068911..53068935,-!p4@TCF4!1.28!20.34!TCF4;;chr7:27205136..27205164,-!p1@HOXA9!1.28!17.90!HOXA9;;chr16:79634624..79634642,-!p1@MAF!1.27!67.95!MAF;;chr3:169381420..169381535,-!p1@MECOM!1.27!20.75!MECOM;;chr2:145277882..145277967,-!p3@ZEB2!1.26!29.70!ZEB2;;chr17:46682321..46682362,-!p1@HOXB6!1.26!17.09!HOXB6;;chr8:10588010..10588030,-!p1@SOX7!1.26!17.09!SOX7;;chr11:128457446..128457461,-!p4@ETS1!1.26!17.09!ETS1;;chr11:32457413..32457431,-!p2@WT1!1.26!17.09!WT1;;chr20:30433396..30433414,-!p1@FOXS1!1.26!17.09!FOXS1;;chr2:66662249..66662267,+!p2@MEIS1!1.25!64.29!MEIS1;;chr1:170633262..170633285,+!p3@PRRX1!1.25!19.12!PRRX1;;chr1:201979743..201979762,+!p1@ELF3!1.25!16.68!ELF3;;chr6:152128782..152128803,+!p5@ESR1!1.25!16.68!ESR1;;chr3:128206762..128206781,-!p2@GATA2!1.24!100.91!GATA2;;chr20:51588873..51588953,+!p1@TSHZ2!1.23!21.16!TSHZ2;;chr2:19558373..19558392,-!p1@OSR1!1.22!41.91!OSR1;;chr3:189507432..189507459,+!p1@TP63!1.22!15.46!TP63;;chr7:28220198..28220269,-!p2@JAZF1!1.21!133.06!JAZF1;;chrX:66763856..66763896,+!p1@AR!1.21!21.97!AR;;chr2:114036488..114036504,-!p1@PAX8!1.21!15.06!PAX8;;chr4:4861385..4861398,+!p1@MSX1!1.20!43.54!MSX1;;chr5:92919100..92919135,+!p3@NR2F1!1.20!17.90!NR2F1;;chr5:134369905..134369972,-!p1@PITX1!1.19!22.38!PITX1;;chr1:164528911..164528940,+!p7@PBX1!1.19!21.57!PBX1;;chr2:176981526..176981543,+!p3@HOXD10!1.19!14.65!HOXD10;;chr2:66662510..66662521,+!p6@MEIS1!1.19!14.65!MEIS1;;chr10:102505327..102505344,+!p1@PAX2!1.19!14.65!PAX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.18!20.34!ZBTB16;;chr17:74137321..74137337,-!p1@FOXJ1!1.18!14.24!FOXJ1;;chr1:24645832..24645853,+!p1@GRHL3!1.18!14.24!GRHL3;;chr11:101000537..101000553,-!p1@PGR!1.17!13.83!PGR;;chr11:129245526..129245553,+!p1@BARX2!1.16!13.43!BARX2;;chr6:126070769..126070801,+!p1@HEY2!1.15!15.06!HEY2;;chr1:170633058..170633084,+!p5@PRRX1!1.15!13.02!PRRX1;;chrX:84498989..84499003,+!p1@ZNF711!1.14!17.50!ZNF711;;chr8:106330656..106330684,+!p1@ZFPM2!1.13!32.96!ZFPM2;;chr12:24715376..24715432,-!p1@SOX5!1.13!15.87!SOX5;;chr1:164528616..164528660,+!p5@PBX1!1.12!24.82!PBX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.12!20.75!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!1.12!13.43!PRRX1;;chr3:114819124..114819200,-!p3@ZBTB20!1.11!27.67!ZBTB20;;chr1:170632285..170632309,+!p1@PRRX1!1.11!13.43!PRRX1;;chr17:7493405..7493419,-!p1@SOX15!1.11!11.80!SOX15;;chr12:115121962..115121987,-!p1@TBX3!1.10!96.84!TBX3;;chr15:96869255..96869291,+!p6@NR2F2!1.10!21.16!NR2F2;;chr5:88178983..88179012,-!p1@MEF2C!1.09!87.89!MEF2C;;chr2:239756671..239756732,+!p1@TWIST2!1.09!36.62!TWIST2;;chr2:176969228..176969260,+!p1@HOXD11!1.09!11.39!HOXD11;;chr2:5832508..5832524,+!p1@SOX11!1.09!11.39!SOX11;;chr3:25470156..25470227,+!p2@RARB!1.09!11.39!RARB;;chr1:164528942..164528964,+!p11@PBX1!1.09!11.39!PBX1;;chrX:84499081..84499115,+!p2@ZNF711!1.07!15.87!ZNF711;;chr15:96869222..96869251,+!p18@NR2F2!1.07!12.61!NR2F2;;chr1:164528410..164528428,+!p1@PBX1!1.06!79.75!PBX1;;chr17:1958388..1958404,+!p1@HIC1!1.06!67.54!HIC1;;chr20:2673383..2673441,+!p1@EBF4!1.06!16.68!EBF4;;chr15:57511589..57511608,+!p4@TCF12!1.06!10.58!TCF12;;chr10:119302182..119302196,+!p6@EMX2!1.06!10.58!EMX2;;chr22:38380543..38380569,-!p1@SOX10!1.06!10.58!SOX10;;chr2:100721881..100721904,-!p6@AFF3!1.05!10.17!AFF3;;chr2:27371919..27371935,+!p2@TCF23!1.05!10.17!TCF23;;chr15:96869206..96869220,+!p21@NR2F2!1.05!10.17!NR2F2;;chr10:119301928..119301955,+!p7@EMX2!1.05!10.17!EMX2;;chr6:106534192..106534224,+!p1@PRDM1!1.03!28.08!PRDM1;;chr1:164528687..164528711,+!p6@PBX1!1.03!11.39!PBX1;;chr6:152011654..152011682,+!p1@ESR1!1.03!9.77!ESR1;;chr2:176973498..176973524,+!p1@HOXD10!1.03!9.77!HOXD10;;chr11:100999775..100999800,-!p2@PGR!1.03!9.77!PGR;;chr15:101069113..101069169,-!p1@CERS3!1.03!9.77!CERS3;;chr1:61548225..61548299,+!p1@NFIA!1.02!124.92!NFIA;;chr10:70320074..70320106,+!p1@TET1!1.02!19.12!TET1;;chr4:174450089..174450153,-!p2@HAND2!1.02!9.36!HAND2;;chr15:57210961..57211012,+!p3@TCF12!1.01!30.11!TCF12;;chr18:52989565..52989623,-!p9@TCF4!1.01!11.80!TCF4;;chr8:49833948..49833973,-!p2@SNAI2!1.00!59.00!SNAI2;;chr6:19837592..19837621,+!p1@ID4!1.00!56.15!ID4;;chr18:45663490..45663528,-!p2@ZBTB7C!1.00!8.95!ZBTB7C;;chr2:176994408..176994492,+!p1@HOXD8!1.00!8.95!HOXD8;;chr10:64018918..64018936,+!p2@ZNF365!1.00!8.95!ZNF365;;chr1:24645921..24645973,+!p2@GRHL3!1.00!8.95!GRHL3;;chr2:70142232..70142251,+!p1@MXD1!0.99!50.05!MXD1;;chr15:42749722..42749739,-!p2@ZFP106!0.99!15.87!ZFP106;;chr6:106534230..106534254,+!p2@PRDM1!0.98!21.97!PRDM1;;chr1:25256756..25256774,-!p1@RUNX3!0.98!16.28!RUNX3;;chr17:46667594..46667619,-!p1@HOXB3!0.98!8.54!HOXB3;;chr1:61547894..61547968,+!p2@NFIA!0.97!24.82!NFIA;;chr20:55204351..55204377,+!p1@TFAP2C!0.97!10.58!TFAP2C;;chr8:106330696..106330719,+!p2@ZFPM2!0.96!10.58!ZFPM2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.96!8.14!RUNX1T1;;chr3:44626446..44626477,+!p1@ZNF660!0.95!14.65!ZNF660;;chr1:214161272..214161322,+!p1@PROX1!0.95!11.39!PROX1;;chr2:10091815..10091864,+!p1@GRHL1!0.95!10.58!GRHL1;;chr9:16870659..16870675,-!p2@BNC2!0.95!9.77!BNC2;;chr17:59477233..59477263,+!p1@TBX2!0.94!24.41!TBX2;;chr17:7492684..7492778,-!p2@SOX15!0.94!16.68!SOX15;;chr15:37390850..37390909,-!p3@MEIS2!0.94!15.46!MEIS2;;chr10:119302150..119302163,+!p8@EMX2!0.94!7.73!EMX2;;chr11:32457103..32457123,-!p3@WT1!0.94!7.73!WT1;;chr11:34642656..34642667,+!p2@EHF!0.94!7.73!EHF;;chr8:49833978..49833996,-!p1@SNAI2!0.93!160.32!SNAI2;;chr18:72922811..72922827,+!p1@TSHZ1!0.93!38.66!TSHZ1;;chr7:19157248..19157268,-!p1@TWIST1!0.93!21.57!TWIST1;;chr1:61548069..61548102,+!p3@NFIA!0.93!18.72!NFIA;;chr18:53257027..53257052,-!p3@TCF4!0.92!30.52!TCF4;;chr18:52989031..52989079,-!p2@TCF4!0.92!17.90!TCF4;;chr17:35294075..35294102,+!p1@ENST00000559335!0.92!7.32!LHX1;;chr2:176969179..176969226,+!p2@HOXD11!0.92!7.32!HOXD11;;chr9:16575347..16575359,-!p12@BNC2!0.92!7.32!BNC2;;chr5:50679228..50679288,+!p1@ISL1!0.92!7.32!ISL1;;chr8:93115584..93115642,-!p5@RUNX1T1!0.92!7.32!RUNX1T1;;chr3:69788576..69788648,+!p1@MITF!0.91!39.47!MITF;;chr20:45142154..45142227,-!p1@ZNF334!0.90!14.24!ZNF334;;chr12:54785074..54785122,-!p2@ZNF385A!0.90!10.99!ZNF385A;;chr10:131762504..131762555,-!p1@EBF3!0.90!6.92!EBF3;;chr5:158527104..158527135,-!p4@EBF1!0.90!6.92!EBF1;;chr8:30890810..30890880,-!p1@PURG!0.90!6.92!PURG;;chr8:93115274..93115323,-!p4@RUNX1T1!0.90!6.92!RUNX1T1;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.33!NR2F1;;chr8:25902876..25902936,-!p1@EBF2!0.88!6.51!EBF2;;chr10:119302645..119302712,+!p3@EMX2!0.88!6.51!EMX2;;chr17:48072574..48072597,-!p1@DLX3!0.88!6.51!DLX3;;chr2:27371866..27371878,+!p3@TCF23!0.88!6.51!TCF23;;chr4:109090075..109090095,-!p2@LEF1!0.88!6.51!LEF1;;chr4:174451350..174451363,-!p3@HAND2!0.88!6.51!HAND2;;chr2:145277640..145277771,-!p1@ZEB2!0.87!91.14!ZEB2;;chr6:21597765..21597779,+!p2@SOX4!0.87!54.93!SOX4;;chr12:96588368..96588394,+!p3@ELK3!0.86!17.50!ELK3;;chr4:57522166..57522260,-!p2@HOPX!0.86!7.32!HOPX;;chr15:37392724..37392757,-!p1@MEIS2!0.85!29.70!MEIS2;;chr16:85932760..85932775,+!p1@IRF8!0.85!6.10!IRF8;;chr10:119303078..119303169,+!p2@EMX2!0.85!6.10!EMX2;;chr10:31610110..31610159,+!p2@ZEB1!0.85!6.10!ZEB1;;chr11:65554528..65554546,+!p1@OVOL1!0.85!6.10!OVOL1;;chr12:115122318..115122331,-!p2@TBX3!0.85!6.10!TBX3;;chr6:152128325..152128339,+!p10@ESR1!0.85!6.10!ESR1;;chr3:114173720..114173794,-!p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| |||
|ffid_belonging_in_development=UBERON:0005795 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 40: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|is_a=EFO:0002091;;FF: | |hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg19.nobarcode.bam | ||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10055-101H1 | |||
|is_a=EFO:0002091;;FF:0010055 | |||
|is_obsolete= | |||
|library_id=CNhs11763 | |||
|library_id_phase_based=2:CNhs11763 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10055 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10055 | |||
|name=uterus, fetal, donor1 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11763,LSID820,release009,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.07413102496179,0,0.07413102496179,0.14826204992358,0,-0.160318030086386,0,-0.129100082269934,0.654106005319834,0,0,0,0,0,0,0,0,0,0.14826204992358,0,0,0,0.193164640032855,0,0,0,0,0,0.671622801861995,0,0,0.692894298858514,0,0,0,0,0,0,0,0,0,0,0,0,0.0349171894171428,0.14826204992358,0,0,0,0,0,0,0,-0.0242150211128343,0,0.06023615643519,0,0.14826204992358,0.258587567436989,0.151799697995619,0,0.531924495666932,0,0,-0.097343627213097,0.14826204992358,0,0,0,0,0,0,0,0.14826204992358,0,0,0,0,0.14826204992358,0,0,0,0,0.14826204992358,0,0,0.178620718942853,0,0.161459301605992,0.206067564678743,0.397659914042706,0,0.116902847703202,0.270277906703769,0.123091787625737,0,0.419556726568814,0.07413102496179,0.14826204992358,0.0502266986858732,0.384940592968437,0,0,0,0,0,0,0.14826204992358,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0,-0.149519406974509,0,0,0.14826204992358,0,0,0 | |||
|repeat_enrich_byname=0.0203766607279494,0,0,0,0.0502266986858732,0.941065350542453,0.14826204992358,0,0.14826204992358,0.346487650381282,0.258587567436989,0.536732260648422,0,0.419556726568814,0,0,0.0114086921514246,0.00157088195172417,0.194492161891203,-0.143515142523472,0.07413102496179,0,0.269004085220227,0.14826204992358,0.14826204992358,0,0,0,0,0,0,0,-0.128119866952565,0,1.18702680089721,0.14826204992358,0,0.346487650381282,0,0.14826204992358,0.114084495670407,0,0.118374889709138,0.278143389303914,0,0,0,0.14826204992358,-0.270240669334324,0,-0.120879483793741,-0.0827201683234173,0.88375054717179,0.285066053571917,0.0925495531423976,0,0,0,0.143145367706436,0.365312286988293,0,0,0.087998511532533,0.305706850719819,0,0,1.79184171283446,0,0.34617755898146,0.0350413378639442,0,0.106845326165558,0,0,0,0,0,0,0,0,0,0,0,0.541484798381893,0.258277305038328,0,0,0.14826204992358,0.14826204992358,0.273359894257613,0,0.110737394226332,0.21197974576073,0.138478894699886,0.186630770873174,0.333234731188982,0.0929953088484471,0.179694680030591,0.137277818488696,0.60033552433897,-0.108492610606647,0.334682557669366,0.438935137359689,0.14826204992358,0.384809625238278,0.396751269933824,0.216094821216795,0.0494936123517933,0.14509104048595,0.375713205945873,0.291195324213338,0,0.14826204992358,0.14826204992358,0.0863250927879475,0.0827550102205568,0.14826204992358,0.279465983653279,0.091133386566453,0.302441693570596,0.15064923862678,0.104977009328915,0.239487958734345,1.0368849450396,0.341190048011459,0.148381736271144,0.844274872240664,0.181100035549119,1.09317970848153,0.0930254377097302,0.187519980755708,0.211985863248089,-0.133741766138175,0.0243171226602096,0.476870059290348,0.0799177888462114,0.366763975820439,0.291685493134874,0.14232197749245,0.14826204992358,0.0165381549233402,0.341561686318384,0,0.14826204992358,-0.190287164965643,0.206799016158332,0.258587567436989,-0.0298523944382618,0.0457737586871304,0.113632088825738,0,0.06359655181705,0.14826204992358,-0.0289199500283755,0.0819725467388544,0.116902847703202,0.0767685758809475,0.0908164444600027,0.0816199864062142,0.075341429791694,0.0826674990186505,0.410547733284989,0.153443735379071,0.246183575251474,0.423637580228679,0.00798024064814973,0.271387079339601,-0.00904825518776775,0.42754417764024,0.249467053565194,0.540790024434249,0.258587567436989,0.250434026304226,0.335803438735398,0.112923644639992,0.275952804819353,0.258587567436989,0.211985788953169,0,0.289217010292582,0.07413102496179,0.117931839688541,0.335225780562977,0.592745164716278,-0.265169469240771,0.115327882524727,0.361024921923082,0.11044259984111,0.288045574975325,0.111885943868241,0.131790432237272,0.14826204992358,0.518211297308573,0.300202003842829,0.202635600846304,0.203507698606806,0,0.504765616395098,0,0,0.236616880817401,0.301256222884033,0,0.0813828224125795,-0.0724706535649741,-0.0674837805468724,0.142616494002055,0.14826204992358,0,0.152926162915329,0.0276743549677093,1.17127203646744,0.219922824819346,0.285252271631614,0.206067564678743,-0.105064291563176,0.14826204992358,0.138752040698175,0.089614831382505,0.346487650381282,-0.177527765965176,0,0.250862990777232,0,0,-0.249881296598824,-0.116628112990133,0,0.07413102496179,0.536732260648422,0,0,0,0,0,0.054429161837816,0,0.180673434236471,0.724048250439168,-0.096245762779459,0.585265901717297,-0.363118596737812,0,0.14826204992358,0.258587567436989,0,0,0.0244006033086505,0.0724560854186192,0.258587567436989,0.101577572288289,0.159865940059219,-0.12301741567642,0.07413102496179,0,0,0,0.48919561436998,0.21632016447409,0.14826204992358,0.214624943883651,0.346487650381282,0.129293783718495,0,0.14826204992358,0.172446577647778,0,0,0.173243825190641,0,0.0905315928699156,0.0871844982752424,0,0,0.07413102496179,0.621619136013293,0.258587567436989,0,0,0.14826204992358,-0.0103232849006838,0,0,-0.0951979127379577,0.0930440152556672,0.0289235922175453,0.177005687890148,0.0190607828277088,0.308792480237381,-0.116980557070558,0.297501373584515,0,0,0.658991785399908,0,0,0.0980344551893586,0,0.14826204992358,0.10090187751278,0,0,0,0,0,0,0.414602344509781,0.0938083325844525,0,0,0,0.346487650381282,0,0,0,0,0,0,-0.217587381625404,0.0560379932650692,0,0,0,0,0.258587567436989,0,0.14826204992358,0.149137802111738,0.189414022312188,0.075729684878277,0,0,0,0,0.14826204992358,0,0,0.298154758466811,0,0,0,0,0,0.531924495666932,0,0,0,0.14826204992358,0.826127603599163,0,0,-0.129100082269934,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135268481401541,-0.222090340676839,0,0,0,0,0.14826204992358,0,0,0.645505618983705,0,0.482084407040504,0,0,0.0343776762146024,0,0,0,0.377288022251348,0,-0.160318030086386,0.14826204992358,0,0,0,0,0.250528243007695,0,0,0,0,0,0,0,0,0,0,0,0,0.129293783718495,0,0.0931908125673948,0.265299795083513,0.171291997362358,0.538643372664467,0.0515239941504391,0,0,0.266320632544664,0,0,0,0,0,0,0.116921625895053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165938209036212,0,0,0,0,0,0,0,0.671622801861995,0,0,0.111391998879758,0,0,0,0,0,0.1074657669797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| |||
|rna_box=101 | |||
|rna_catalog_number=Cat:RtHFN: Uterus | |||
|rna_concentration=1.9 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0 | |||
|rna_lot_number=B402230 | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=H1 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=101H1 | |||
|rna_weight_ug=10 | |||
|sample_age= | |||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |||
|sample_cell_line= | |||
|sample_cell_lot=NA | |||
|sample_cell_type=CELL MIXTURE - tissue sample | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Biochain | |||
|sample_description= | |||
|sample_dev_stage=26 weeks fetus | |||
|sample_disease=normal | |||
|sample_donor(cell lot)=1 | |||
|sample_ethnicity=A? | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.153756353962e-211!GO:0005737;cytoplasm;4.50442199320613e-159!GO:0043226;organelle;1.12677428600914e-146!GO:0043229;intracellular organelle;3.15663725144058e-146!GO:0043231;intracellular membrane-bound organelle;2.32853577200713e-129!GO:0043227;membrane-bound organelle;2.36980671969923e-129!GO:0005515;protein binding;7.79286023197923e-100!GO:0044422;organelle part;2.09675920009403e-96!GO:0044446;intracellular organelle part;5.20641941706631e-95!GO:0044444;cytoplasmic part;4.27198743242215e-91!GO:0032991;macromolecular complex;2.86885564215619e-70!GO:0043170;macromolecule metabolic process;1.44507490595214e-57!GO:0044238;primary metabolic process;8.5017667606758e-57!GO:0016043;cellular component organization and biogenesis;2.97156156901764e-56!GO:0044237;cellular metabolic process;4.39440662503256e-54!GO:0005634;nucleus;5.85168082887654e-54!GO:0030529;ribonucleoprotein complex;8.06290009674034e-54!GO:0044428;nuclear part;1.45148954376791e-46!GO:0003723;RNA binding;6.46199824098922e-46!GO:0043233;organelle lumen;1.13603783120317e-43!GO:0031974;membrane-enclosed lumen;1.13603783120317e-43!GO:0019538;protein metabolic process;2.20418978472024e-40!GO:0043234;protein complex;1.70742411493607e-37!GO:0043228;non-membrane-bound organelle;8.54567060947912e-36!GO:0043232;intracellular non-membrane-bound organelle;8.54567060947912e-36!GO:0005739;mitochondrion;7.29817945452136e-34!GO:0033036;macromolecule localization;2.97021868863055e-33!GO:0044260;cellular macromolecule metabolic process;3.32763855249201e-33!GO:0015031;protein transport;3.34013335216983e-33!GO:0005840;ribosome;5.91769561512822e-33!GO:0044267;cellular protein metabolic process;7.47368034787618e-33!GO:0065003;macromolecular complex assembly;9.03584697386051e-32!GO:0005829;cytosol;3.0102323659118e-31!GO:0031090;organelle membrane;6.5324061858782e-31!GO:0008104;protein localization;2.13441039536741e-30!GO:0045184;establishment of protein localization;3.45293721493496e-30!GO:0006996;organelle organization and biogenesis;3.53133529972013e-30!GO:0022607;cellular component assembly;4.10046350576851e-30!GO:0016071;mRNA metabolic process;1.47303300525035e-29!GO:0043283;biopolymer metabolic process;2.37368763885461e-29!GO:0003735;structural constituent of ribosome;7.68232844277006e-29!GO:0046907;intracellular transport;9.36031754987164e-29!GO:0008380;RNA splicing;1.77742685457608e-28!GO:0006396;RNA processing;5.49830144321522e-28!GO:0006412;translation;2.77350499686839e-27!GO:0031967;organelle envelope;1.02094088019266e-26!GO:0031975;envelope;1.33019971291433e-26!GO:0033279;ribosomal subunit;2.15902361285817e-26!GO:0031981;nuclear lumen;3.58344735743368e-26!GO:0044429;mitochondrial part;7.08461892104986e-25!GO:0006397;mRNA processing;1.11841921882023e-24!GO:0010467;gene expression;1.2181903885278e-24!GO:0006886;intracellular protein transport;8.82042864390905e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.67549428546412e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.28459619360817e-21!GO:0005681;spliceosome;1.06588801089864e-19!GO:0051641;cellular localization;5.53936344817999e-19!GO:0051649;establishment of cellular localization;7.6121186948485e-19!GO:0009059;macromolecule biosynthetic process;2.02525105466674e-18!GO:0044445;cytosolic part;3.15850362987209e-18!GO:0005654;nucleoplasm;1.41417364095204e-17!GO:0019866;organelle inner membrane;1.49514634012318e-17!GO:0006119;oxidative phosphorylation;1.66198012854497e-17!GO:0006259;DNA metabolic process;2.79321384618589e-17!GO:0048770;pigment granule;4.331260758949e-17!GO:0042470;melanosome;4.331260758949e-17!GO:0005740;mitochondrial envelope;7.26075947753986e-17!GO:0009058;biosynthetic process;7.7251568659324e-17!GO:0031966;mitochondrial membrane;1.81226914326503e-16!GO:0044249;cellular biosynthetic process;3.49691895226155e-16!GO:0008134;transcription factor binding;6.36144816543908e-16!GO:0007049;cell cycle;8.53376463237582e-16!GO:0044455;mitochondrial membrane part;1.97993411570082e-15!GO:0005743;mitochondrial inner membrane;2.25632053892642e-15!GO:0000166;nucleotide binding;5.68149633103053e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.68149633103053e-15!GO:0048523;negative regulation of cellular process;1.95857883410663e-14!GO:0044451;nucleoplasm part;3.98371920432511e-14!GO:0005794;Golgi apparatus;4.02008168074908e-14!GO:0006457;protein folding;6.02237762422107e-14!GO:0005746;mitochondrial respiratory chain;6.22456566348568e-14!GO:0005783;endoplasmic reticulum;8.08437715783647e-14!GO:0016192;vesicle-mediated transport;8.15196024688101e-14!GO:0015934;large ribosomal subunit;1.13520520000721e-13!GO:0012505;endomembrane system;1.2305845604248e-13!GO:0015935;small ribosomal subunit;1.2305845604248e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.14769528120429e-13!GO:0050136;NADH dehydrogenase (quinone) activity;4.14769528120429e-13!GO:0003954;NADH dehydrogenase activity;4.14769528120429e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.14769528120429e-13!GO:0003676;nucleic acid binding;4.16183291222219e-13!GO:0048193;Golgi vesicle transport;8.8446309564588e-13!GO:0048519;negative regulation of biological process;1.00478041189934e-12!GO:0022618;protein-RNA complex assembly;1.36879018373586e-12!GO:0006461;protein complex assembly;1.22725068569913e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.3898079552392e-11!GO:0022402;cell cycle process;1.57288767528035e-11!GO:0006511;ubiquitin-dependent protein catabolic process;1.74365007508699e-11!GO:0016462;pyrophosphatase activity;2.10699352732577e-11!GO:0019941;modification-dependent protein catabolic process;2.64319600220621e-11!GO:0043632;modification-dependent macromolecule catabolic process;2.64319600220621e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.93607161371557e-11!GO:0051276;chromosome organization and biogenesis;3.44490367768137e-11!GO:0050794;regulation of cellular process;3.84771765793958e-11!GO:0044257;cellular protein catabolic process;4.08686158226532e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;4.2172141155434e-11!GO:0030964;NADH dehydrogenase complex (quinone);4.60407334761003e-11!GO:0045271;respiratory chain complex I;4.60407334761003e-11!GO:0005747;mitochondrial respiratory chain complex I;4.60407334761003e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.77547111433219e-11!GO:0042775;organelle ATP synthesis coupled electron transport;6.14705918826146e-11!GO:0042773;ATP synthesis coupled electron transport;6.14705918826146e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;6.14705918826146e-11!GO:0005635;nuclear envelope;6.16139717195754e-11!GO:0016070;RNA metabolic process;6.16139717195754e-11!GO:0017111;nucleoside-triphosphatase activity;9.5562000723981e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.26780712276833e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.39398659316306e-10!GO:0032553;ribonucleotide binding;1.52116523254373e-10!GO:0032555;purine ribonucleotide binding;1.52116523254373e-10!GO:0031980;mitochondrial lumen;1.52116523254373e-10!GO:0005759;mitochondrial matrix;1.52116523254373e-10!GO:0006512;ubiquitin cycle;1.7313701169084e-10!GO:0000502;proteasome complex (sensu Eukaryota);2.26945996508633e-10!GO:0044265;cellular macromolecule catabolic process;2.28855114173806e-10!GO:0006323;DNA packaging;3.09586406390066e-10!GO:0043412;biopolymer modification;3.20570220182289e-10!GO:0006605;protein targeting;3.79309264165416e-10!GO:0007010;cytoskeleton organization and biogenesis;3.81240333110403e-10!GO:0031965;nuclear membrane;4.58829231282895e-10!GO:0016874;ligase activity;4.73464245523561e-10!GO:0008135;translation factor activity, nucleic acid binding;7.60052851279714e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;9.80229551340519e-10!GO:0000375;RNA splicing, via transesterification reactions;9.80229551340519e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.80229551340519e-10!GO:0043687;post-translational protein modification;1.08154180388614e-09!GO:0043285;biopolymer catabolic process;1.10992503853936e-09!GO:0006464;protein modification process;1.18260654536587e-09!GO:0051082;unfolded protein binding;1.30361518312145e-09!GO:0050789;regulation of biological process;1.41281230847375e-09!GO:0030163;protein catabolic process;1.60868984128223e-09!GO:0008565;protein transporter activity;1.61911756687372e-09!GO:0017076;purine nucleotide binding;1.62443707302768e-09!GO:0006913;nucleocytoplasmic transport;1.9443419761455e-09!GO:0030036;actin cytoskeleton organization and biogenesis;2.04631692433918e-09!GO:0003712;transcription cofactor activity;2.05639359176471e-09!GO:0031988;membrane-bound vesicle;2.18830143435343e-09!GO:0006333;chromatin assembly or disassembly;3.26276352434708e-09!GO:0044432;endoplasmic reticulum part;3.70447063601468e-09!GO:0016023;cytoplasmic membrane-bound vesicle;4.09375543200886e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.59932162977154e-09!GO:0051169;nuclear transport;5.42847251797098e-09!GO:0005761;mitochondrial ribosome;8.92900864609003e-09!GO:0000313;organellar ribosome;8.92900864609003e-09!GO:0016604;nuclear body;9.58277599248174e-09!GO:0005793;ER-Golgi intermediate compartment;1.00639810300815e-08!GO:0031982;vesicle;1.44035025995707e-08!GO:0016564;transcription repressor activity;1.5856555161884e-08!GO:0005694;chromosome;1.82153504866843e-08!GO:0051726;regulation of cell cycle;1.88887251290091e-08!GO:0000074;regulation of progression through cell cycle;1.92960057417168e-08!GO:0006366;transcription from RNA polymerase II promoter;2.55614365610353e-08!GO:0009057;macromolecule catabolic process;2.75317639744794e-08!GO:0031410;cytoplasmic vesicle;3.25267147562488e-08!GO:0065004;protein-DNA complex assembly;3.32586024015632e-08!GO:0006446;regulation of translational initiation;4.4336642962813e-08!GO:0016607;nuclear speck;4.89938687386785e-08!GO:0030029;actin filament-based process;5.73431810757265e-08!GO:0006334;nucleosome assembly;5.78727578424895e-08!GO:0008092;cytoskeletal protein binding;6.26237088189294e-08!GO:0031252;leading edge;6.9735408936857e-08!GO:0005730;nucleolus;7.01187694985994e-08!GO:0003743;translation initiation factor activity;8.90089358530261e-08!GO:0044427;chromosomal part;9.30760092177038e-08!GO:0006413;translational initiation;1.00936588942259e-07!GO:0000785;chromatin;1.13512341228988e-07!GO:0044453;nuclear membrane part;1.27834317550132e-07!GO:0006974;response to DNA damage stimulus;2.21157133160906e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.88443792222146e-07!GO:0031324;negative regulation of cellular metabolic process;2.91428525766256e-07!GO:0008639;small protein conjugating enzyme activity;3.06198980177436e-07!GO:0005524;ATP binding;3.3342926476489e-07!GO:0000278;mitotic cell cycle;3.49304101484437e-07!GO:0012501;programmed cell death;3.49304101484437e-07!GO:0004842;ubiquitin-protein ligase activity;3.8417692564495e-07!GO:0006793;phosphorus metabolic process;4.19981589685166e-07!GO:0006796;phosphate metabolic process;4.19981589685166e-07!GO:0032559;adenyl ribonucleotide binding;4.29530189195038e-07!GO:0044248;cellular catabolic process;4.31606357192265e-07!GO:0005856;cytoskeleton;5.15617524923776e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.46760219763474e-07!GO:0045786;negative regulation of progression through cell cycle;5.65131510821337e-07!GO:0016481;negative regulation of transcription;5.73384360705871e-07!GO:0031497;chromatin assembly;5.83140595647769e-07!GO:0006915;apoptosis;5.96186592456686e-07!GO:0015630;microtubule cytoskeleton;6.69492378360139e-07!GO:0051186;cofactor metabolic process;6.82474301781497e-07!GO:0008219;cell death;7.96412119102851e-07!GO:0016265;death;7.96412119102851e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.3489351114895e-07!GO:0017038;protein import;9.94825352798356e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.0676161889925e-06!GO:0009892;negative regulation of metabolic process;1.07421992809206e-06!GO:0009060;aerobic respiration;1.21431527158696e-06!GO:0007264;small GTPase mediated signal transduction;1.26669037173352e-06!GO:0048475;coated membrane;1.57017380110887e-06!GO:0030117;membrane coat;1.57017380110887e-06!GO:0030120;vesicle coat;1.6015132065331e-06!GO:0030662;coated vesicle membrane;1.6015132065331e-06!GO:0019787;small conjugating protein ligase activity;1.6668492143973e-06!GO:0009055;electron carrier activity;1.99992181006374e-06!GO:0003924;GTPase activity;2.06563947846291e-06!GO:0008361;regulation of cell size;2.26620725358491e-06!GO:0016049;cell growth;2.47781211914934e-06!GO:0045333;cellular respiration;2.48589925736913e-06!GO:0016310;phosphorylation;2.70574076460039e-06!GO:0005788;endoplasmic reticulum lumen;3.58371207395935e-06!GO:0030554;adenyl nucleotide binding;3.84659573776848e-06!GO:0065007;biological regulation;3.98937618709149e-06!GO:0051246;regulation of protein metabolic process;4.12217315789889e-06!GO:0019829;cation-transporting ATPase activity;5.22976225865868e-06!GO:0015986;ATP synthesis coupled proton transport;5.25205204832225e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.25205204832225e-06!GO:0005525;GTP binding;5.31161948102994e-06!GO:0003697;single-stranded DNA binding;5.90081346530141e-06!GO:0043566;structure-specific DNA binding;6.79141193765153e-06!GO:0030532;small nuclear ribonucleoprotein complex;7.68050082526701e-06!GO:0005643;nuclear pore;8.59181393105828e-06!GO:0006260;DNA replication;1.00276507787488e-05!GO:0009719;response to endogenous stimulus;1.03540520754743e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.29966024672475e-05!GO:0006281;DNA repair;1.71326679121681e-05!GO:0005789;endoplasmic reticulum membrane;1.76329863275472e-05!GO:0006606;protein import into nucleus;1.95995003684093e-05!GO:0051301;cell division;1.9656861847466e-05!GO:0045259;proton-transporting ATP synthase complex;2.13800512657502e-05!GO:0016044;membrane organization and biogenesis;2.15709627020287e-05!GO:0003714;transcription corepressor activity;2.372389677217e-05!GO:0006099;tricarboxylic acid cycle;2.45161759794726e-05!GO:0046356;acetyl-CoA catabolic process;2.45161759794726e-05!GO:0051170;nuclear import;2.52580597651298e-05!GO:0006732;coenzyme metabolic process;2.64805219844271e-05!GO:0006403;RNA localization;2.86829841283075e-05!GO:0032561;guanyl ribonucleotide binding;3.23630370165089e-05!GO:0019001;guanyl nucleotide binding;3.23630370165089e-05!GO:0022403;cell cycle phase;3.2479506341804e-05!GO:0050657;nucleic acid transport;3.2479506341804e-05!GO:0051236;establishment of RNA localization;3.2479506341804e-05!GO:0050658;RNA transport;3.2479506341804e-05!GO:0005768;endosome;3.2479506341804e-05!GO:0030027;lamellipodium;3.2479506341804e-05!GO:0000245;spliceosome assembly;3.33091819789109e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.33091819789109e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.33091819789109e-05!GO:0009142;nucleoside triphosphate biosynthetic process;3.44967373896059e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.44967373896059e-05!GO:0019899;enzyme binding;3.57657571763885e-05!GO:0016881;acid-amino acid ligase activity;3.93035715392195e-05!GO:0009150;purine ribonucleotide metabolic process;4.00095852448346e-05!GO:0016568;chromatin modification;4.09995715019888e-05!GO:0044431;Golgi apparatus part;4.11221232291414e-05!GO:0016469;proton-transporting two-sector ATPase complex;4.29957396228517e-05!GO:0009141;nucleoside triphosphate metabolic process;4.33857000031787e-05!GO:0048471;perinuclear region of cytoplasm;4.40204824414745e-05!GO:0009259;ribonucleotide metabolic process;4.54660130382403e-05!GO:0016887;ATPase activity;4.61584230651837e-05!GO:0045892;negative regulation of transcription, DNA-dependent;4.69882306213659e-05!GO:0042623;ATPase activity, coupled;4.85542340363722e-05!GO:0006613;cotranslational protein targeting to membrane;5.01503394335038e-05!GO:0004386;helicase activity;5.03120874445965e-05!GO:0006163;purine nucleotide metabolic process;5.12925732681168e-05!GO:0009152;purine ribonucleotide biosynthetic process;5.2386673410716e-05!GO:0005798;Golgi-associated vesicle;5.30890314278824e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.30890314278824e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.30890314278824e-05!GO:0009144;purine nucleoside triphosphate metabolic process;5.30890314278824e-05!GO:0009199;ribonucleoside triphosphate metabolic process;5.3649546680056e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.72472546802797e-05!GO:0006916;anti-apoptosis;5.83531884577563e-05!GO:0000902;cell morphogenesis;6.43332191160069e-05!GO:0032989;cellular structure morphogenesis;6.43332191160069e-05!GO:0043069;negative regulation of programmed cell death;6.9332033585852e-05!GO:0001558;regulation of cell growth;7.08975219682699e-05!GO:0006164;purine nucleotide biosynthetic process;7.1390747281863e-05!GO:0003713;transcription coactivator activity;7.88162357079594e-05!GO:0000151;ubiquitin ligase complex;8.48130785872243e-05!GO:0032446;protein modification by small protein conjugation;8.73315421803302e-05!GO:0006754;ATP biosynthetic process;8.9579835488575e-05!GO:0006753;nucleoside phosphate metabolic process;8.9579835488575e-05!GO:0005791;rough endoplasmic reticulum;0.000102887459705312!GO:0043066;negative regulation of apoptosis;0.000106480074325339!GO:0016563;transcription activator activity;0.000110190988983414!GO:0009260;ribonucleotide biosynthetic process;0.000118582916039621!GO:0030867;rough endoplasmic reticulum membrane;0.000135157723175598!GO:0009109;coenzyme catabolic process;0.000140949882469209!GO:0043623;cellular protein complex assembly;0.00014312954879225!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000146971827710214!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000147425861921826!GO:0015078;hydrogen ion transmembrane transporter activity;0.000147930615720519!GO:0000087;M phase of mitotic cell cycle;0.000148454693299611!GO:0007067;mitosis;0.000170858459676531!GO:0005813;centrosome;0.000170858459676531!GO:0046034;ATP metabolic process;0.000181077818374423!GO:0016567;protein ubiquitination;0.000194440883250101!GO:0006084;acetyl-CoA metabolic process;0.000198154147660257!GO:0005839;proteasome core complex (sensu Eukaryota);0.00021110878914619!GO:0003779;actin binding;0.00021770077624288!GO:0051427;hormone receptor binding;0.000225380657679851!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000228404106116509!GO:0051128;regulation of cellular component organization and biogenesis;0.000235945042941524!GO:0046930;pore complex;0.000240550269582255!GO:0051187;cofactor catabolic process;0.000244924495954737!GO:0016859;cis-trans isomerase activity;0.000244924495954737!GO:0044420;extracellular matrix part;0.00027159498257171!GO:0005815;microtubule organizing center;0.000275761929625445!GO:0042802;identical protein binding;0.000288597099537251!GO:0000786;nucleosome;0.000297883645527974!GO:0008026;ATP-dependent helicase activity;0.000319057958486654!GO:0005581;collagen;0.000320675010016065!GO:0030133;transport vesicle;0.000320675010016065!GO:0051789;response to protein stimulus;0.000331028670451354!GO:0006986;response to unfolded protein;0.000331028670451354!GO:0051028;mRNA transport;0.000333427636993299!GO:0005770;late endosome;0.000346092768319573!GO:0065002;intracellular protein transport across a membrane;0.000347517652159296!GO:0005667;transcription factor complex;0.00040189489247049!GO:0035257;nuclear hormone receptor binding;0.000412957122597659!GO:0005905;coated pit;0.000443731606396149!GO:0009117;nucleotide metabolic process;0.00048976294577272!GO:0005912;adherens junction;0.000541189156269175!GO:0008250;oligosaccharyl transferase complex;0.000542092065628766!GO:0042254;ribosome biogenesis and assembly;0.000543610020760445!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000674330480677992!GO:0004812;aminoacyl-tRNA ligase activity;0.000674330480677992!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000674330480677992!GO:0003729;mRNA binding;0.000677309808891123!GO:0004576;oligosaccharyl transferase activity;0.000699338023836466!GO:0005083;small GTPase regulator activity;0.000702251264517837!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000716358527275576!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000741028710471509!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000810338448684999!GO:0004298;threonine endopeptidase activity;0.000859133003954445!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000939471579330736!GO:0005769;early endosome;0.00100665455080815!GO:0000139;Golgi membrane;0.0011215217192285!GO:0007265;Ras protein signal transduction;0.00112871644444363!GO:0016853;isomerase activity;0.00114684869959229!GO:0003690;double-stranded DNA binding;0.00115484760252138!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00121404665160171!GO:0019222;regulation of metabolic process;0.00124145455579216!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00127957415242803!GO:0030663;COPI coated vesicle membrane;0.00129926243830527!GO:0030126;COPI vesicle coat;0.00129926243830527!GO:0043038;amino acid activation;0.00130118471119031!GO:0006418;tRNA aminoacylation for protein translation;0.00130118471119031!GO:0043039;tRNA aminoacylation;0.00130118471119031!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0013642602474551!GO:0003724;RNA helicase activity;0.00143127155237897!GO:0051920;peroxiredoxin activity;0.00147261350944151!GO:0005885;Arp2/3 protein complex;0.00153662538397273!GO:0051188;cofactor biosynthetic process;0.00154247558534336!GO:0008154;actin polymerization and/or depolymerization;0.00161957111531179!GO:0005938;cell cortex;0.00166880792432819!GO:0005762;mitochondrial large ribosomal subunit;0.00175665768224775!GO:0000315;organellar large ribosomal subunit;0.00175665768224775!GO:0005637;nuclear inner membrane;0.00180569144003875!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00183988124170734!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00183988124170734!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00183988124170734!GO:0033116;ER-Golgi intermediate compartment membrane;0.00186847149763009!GO:0044440;endosomal part;0.00201039284868157!GO:0010008;endosome membrane;0.00201039284868157!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00205479791296526!GO:0000279;M phase;0.00205629839648318!GO:0030695;GTPase regulator activity;0.0020946125455225!GO:0051252;regulation of RNA metabolic process;0.00211635993302178!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00211635993302178!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0021841831315269!GO:0006897;endocytosis;0.00219405090019515!GO:0010324;membrane invagination;0.00219405090019515!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00232692081555539!GO:0001726;ruffle;0.00236926453184016!GO:0009056;catabolic process;0.00246067749697034!GO:0006402;mRNA catabolic process;0.00258237366089933!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00272850169900946!GO:0035258;steroid hormone receptor binding;0.00278750108943774!GO:0051087;chaperone binding;0.00283043140032557!GO:0030137;COPI-coated vesicle;0.00285694111864558!GO:0040008;regulation of growth;0.00285726947418975!GO:0030518;steroid hormone receptor signaling pathway;0.00321402704091225!GO:0043021;ribonucleoprotein binding;0.0033784414172195!GO:0005773;vacuole;0.00338362880925276!GO:0006612;protein targeting to membrane;0.00341030194390787!GO:0003682;chromatin binding;0.0035100794197971!GO:0008654;phospholipid biosynthetic process;0.00351687199248327!GO:0006752;group transfer coenzyme metabolic process;0.00357796662045306!GO:0043488;regulation of mRNA stability;0.00357796662045306!GO:0043487;regulation of RNA stability;0.00357796662045306!GO:0030134;ER to Golgi transport vesicle;0.00364446826116961!GO:0015980;energy derivation by oxidation of organic compounds;0.0037675378241487!GO:0016197;endosome transport;0.0038430583624245!GO:0005586;collagen type III;0.00387021069399745!GO:0051674;localization of cell;0.00391330771674462!GO:0006928;cell motility;0.00391330771674462!GO:0048522;positive regulation of cellular process;0.00394140514302485!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00402945204423479!GO:0007050;cell cycle arrest;0.00403542456845729!GO:0045045;secretory pathway;0.00427755539339599!GO:0005096;GTPase activator activity;0.0043143502869285!GO:0016363;nuclear matrix;0.00439094721809891!GO:0007005;mitochondrion organization and biogenesis;0.00446309843031997!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00451652531485581!GO:0048468;cell development;0.00484974037622738!GO:0051168;nuclear export;0.00484974037622738!GO:0005741;mitochondrial outer membrane;0.00491103583855748!GO:0005819;spindle;0.00494348698319874!GO:0005874;microtubule;0.00500722076811915!GO:0030041;actin filament polymerization;0.00501053917596171!GO:0009966;regulation of signal transduction;0.00509052388373361!GO:0005048;signal sequence binding;0.00512218157745532!GO:0006891;intra-Golgi vesicle-mediated transport;0.00516295033746709!GO:0007167;enzyme linked receptor protein signaling pathway;0.00524696737410919!GO:0008283;cell proliferation;0.00533473079644973!GO:0051325;interphase;0.00535919916680589!GO:0042981;regulation of apoptosis;0.00545349789970901!GO:0005913;cell-cell adherens junction;0.00609075905552706!GO:0008139;nuclear localization sequence binding;0.00612092114696272!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00621005676530981!GO:0051329;interphase of mitotic cell cycle;0.00621005676530981!GO:0045792;negative regulation of cell size;0.00625664700359589!GO:0030521;androgen receptor signaling pathway;0.00631581632774022!GO:0030308;negative regulation of cell growth;0.00640555832782933!GO:0030031;cell projection biogenesis;0.00640555832782933!GO:0043067;regulation of programmed cell death;0.00647700404578522!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00654160464459448!GO:0051270;regulation of cell motility;0.00665639418348602!GO:0018196;peptidyl-asparagine modification;0.00684859851568331!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00684859851568331!GO:0008047;enzyme activator activity;0.00684859851568331!GO:0017166;vinculin binding;0.00689220685439151!GO:0031968;organelle outer membrane;0.00715360453448875!GO:0001666;response to hypoxia;0.00723246213932894!GO:0016584;nucleosome positioning;0.00752353474119683!GO:0048500;signal recognition particle;0.00762955836112955!GO:0030127;COPII vesicle coat;0.00782776060699205!GO:0012507;ER to Golgi transport vesicle membrane;0.00782776060699205!GO:0000323;lytic vacuole;0.00800067833881614!GO:0005764;lysosome;0.00800067833881614!GO:0030118;clathrin coat;0.00849559863571121!GO:0006414;translational elongation;0.00873540828069239!GO:0019867;outer membrane;0.00873540828069239!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00873540828069239!GO:0033673;negative regulation of kinase activity;0.00913106677939614!GO:0006469;negative regulation of protein kinase activity;0.00913106677939614!GO:0051287;NAD binding;0.00913106677939614!GO:0000314;organellar small ribosomal subunit;0.00917704741658682!GO:0005763;mitochondrial small ribosomal subunit;0.00917704741658682!GO:0031072;heat shock protein binding;0.00956528475339554!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0105823998376396!GO:0007243;protein kinase cascade;0.0108004707095389!GO:0030132;clathrin coat of coated pit;0.0108874606119139!GO:0019843;rRNA binding;0.0110109926049066!GO:0006607;NLS-bearing substrate import into nucleus;0.011125121836181!GO:0015629;actin cytoskeleton;0.0113716057119085!GO:0001725;stress fiber;0.0114297839493634!GO:0032432;actin filament bundle;0.0114297839493634!GO:0008287;protein serine/threonine phosphatase complex;0.011441907894972!GO:0006364;rRNA processing;0.0116168924396193!GO:0006892;post-Golgi vesicle-mediated transport;0.0123060093215592!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0123798473835309!GO:0008186;RNA-dependent ATPase activity;0.0124603878016327!GO:0005100;Rho GTPase activator activity;0.0125382336214894!GO:0000118;histone deacetylase complex;0.0125410562751123!GO:0030658;transport vesicle membrane;0.0125410562751123!GO:0015631;tubulin binding;0.0128797982846016!GO:0043681;protein import into mitochondrion;0.0129020278567836!GO:0031543;peptidyl-proline dioxygenase activity;0.0129833243194515!GO:0019904;protein domain specific binding;0.013034150546987!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0133846595252868!GO:0007266;Rho protein signal transduction;0.0134000098058658!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0135605887295194!GO:0033043;regulation of organelle organization and biogenesis;0.0135605887295194!GO:0009108;coenzyme biosynthetic process;0.0137295156388665!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0138334498016218!GO:0003702;RNA polymerase II transcription factor activity;0.0141966455736223!GO:0001527;microfibril;0.0147182135296794!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.014755043945081!GO:0000059;protein import into nucleus, docking;0.0150608829877362!GO:0031589;cell-substrate adhesion;0.015435254274579!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0157432644457643!GO:0007051;spindle organization and biogenesis;0.0163579726154868!GO:0030522;intracellular receptor-mediated signaling pathway;0.0163985369751611!GO:0045893;positive regulation of transcription, DNA-dependent;0.0165979335075815!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0167028774559963!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0174084694829574!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0174084694829574!GO:0051348;negative regulation of transferase activity;0.01749724833509!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0183403155255571!GO:0045047;protein targeting to ER;0.0183403155255571!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0186124799134096!GO:0016740;transferase activity;0.0187615693778189!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0192701360580364!GO:0005159;insulin-like growth factor receptor binding;0.0193858053404545!GO:0007017;microtubule-based process;0.0194270569094504!GO:0008601;protein phosphatase type 2A regulator activity;0.0194369910353386!GO:0007160;cell-matrix adhesion;0.0194869521877915!GO:0040011;locomotion;0.020154580007534!GO:0008286;insulin receptor signaling pathway;0.0205962730854794!GO:0031901;early endosome membrane;0.0206692063924533!GO:0030659;cytoplasmic vesicle membrane;0.0209083239380967!GO:0040012;regulation of locomotion;0.02151263682779!GO:0008064;regulation of actin polymerization and/or depolymerization;0.02151263682779!GO:0051101;regulation of DNA binding;0.022261876295145!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0223231004789706!GO:0000159;protein phosphatase type 2A complex;0.0223894588071151!GO:0012506;vesicle membrane;0.0225009259159013!GO:0005099;Ras GTPase activator activity;0.0226119199809439!GO:0001944;vasculature development;0.0226167154572713!GO:0005521;lamin binding;0.0226564087330702!GO:0005583;fibrillar collagen;0.0227787818776233!GO:0016072;rRNA metabolic process;0.0233667108104723!GO:0030032;lamellipodium biogenesis;0.0239030217086306!GO:0048518;positive regulation of biological process;0.0243163210947179!GO:0009116;nucleoside metabolic process;0.0246291979683629!GO:0008312;7S RNA binding;0.0246291979683629!GO:0006401;RNA catabolic process;0.0254683542981509!GO:0031625;ubiquitin protein ligase binding;0.0256532393170865!GO:0005869;dynactin complex;0.0262431126784642!GO:0043034;costamere;0.0266542445899934!GO:0043284;biopolymer biosynthetic process;0.0267384015374784!GO:0019798;procollagen-proline dioxygenase activity;0.0272634393172082!GO:0001568;blood vessel development;0.0273146667884483!GO:0008022;protein C-terminus binding;0.0276221881300149!GO:0006399;tRNA metabolic process;0.0280225651855813!GO:0008147;structural constituent of bone;0.0285272167485337!GO:0009081;branched chain family amino acid metabolic process;0.0285536374052155!GO:0007004;telomere maintenance via telomerase;0.0288638786819184!GO:0030660;Golgi-associated vesicle membrane;0.0294051906194006!GO:0004004;ATP-dependent RNA helicase activity;0.0294073890513736!GO:0006261;DNA-dependent DNA replication;0.0295899754866856!GO:0044433;cytoplasmic vesicle part;0.0296316627036821!GO:0005684;U2-dependent spliceosome;0.0307785284736459!GO:0045113;regulation of integrin biosynthetic process;0.0309750311060968!GO:0045112;integrin biosynthetic process;0.0309750311060968!GO:0006950;response to stress;0.0327146246037921!GO:0030833;regulation of actin filament polymerization;0.0328442797806908!GO:0045941;positive regulation of transcription;0.0332094132152072!GO:0065009;regulation of a molecular function;0.0334489559104131!GO:0031418;L-ascorbic acid binding;0.0335763648407572!GO:0000792;heterochromatin;0.0346118166222037!GO:0007052;mitotic spindle organization and biogenesis;0.0346118166222037!GO:0031124;mRNA 3'-end processing;0.0346472453874504!GO:0045926;negative regulation of growth;0.0346472453874504!GO:0031272;regulation of pseudopodium formation;0.0346472453874504!GO:0031269;pseudopodium formation;0.0346472453874504!GO:0031344;regulation of cell projection organization and biogenesis;0.0346472453874504!GO:0031268;pseudopodium organization and biogenesis;0.0346472453874504!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0346472453874504!GO:0031274;positive regulation of pseudopodium formation;0.0346472453874504!GO:0003746;translation elongation factor activity;0.0349943290044003!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0349943290044003!GO:0030162;regulation of proteolysis;0.0350393460852286!GO:0048487;beta-tubulin binding;0.0358320947550024!GO:0030119;AP-type membrane coat adaptor complex;0.0362868560472949!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.037400236166066!GO:0008180;signalosome;0.0375878660453774!GO:0009165;nucleotide biosynthetic process;0.0386275861862016!GO:0004674;protein serine/threonine kinase activity;0.0389112667160834!GO:0044448;cell cortex part;0.0394192839878875!GO:0005832;chaperonin-containing T-complex;0.0395688500531117!GO:0007028;cytoplasm organization and biogenesis;0.0399986830756022!GO:0050681;androgen receptor binding;0.0410919304074161!GO:0000776;kinetochore;0.0415748862455918!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0417976890580621!GO:0015002;heme-copper terminal oxidase activity;0.0417976890580621!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0417976890580621!GO:0004129;cytochrome-c oxidase activity;0.0417976890580621!GO:0016126;sterol biosynthetic process;0.0418036575946896!GO:0047485;protein N-terminus binding;0.0420256110983017!GO:0031323;regulation of cellular metabolic process;0.042658823533524!GO:0005862;muscle thin filament tropomyosin;0.042661303570668!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.042661303570668!GO:0009967;positive regulation of signal transduction;0.042661303570668!GO:0031529;ruffle organization and biogenesis;0.0429373927955802!GO:0006338;chromatin remodeling;0.0434202497093188!GO:0016301;kinase activity;0.0439151461224634!GO:0004860;protein kinase inhibitor activity;0.0439151461224634!GO:0030832;regulation of actin filament length;0.044134404751518!GO:0005606;laminin-1 complex;0.0448072118305327!GO:0008097;5S rRNA binding;0.0449244420723883!GO:0045454;cell redox homeostasis;0.0449244420723883!GO:0007006;mitochondrial membrane organization and biogenesis;0.0449244420723883!GO:0030235;nitric-oxide synthase regulator activity;0.0453583760674963!GO:0006376;mRNA splice site selection;0.0465117710404682!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0465117710404682!GO:0032535;regulation of cellular component size;0.0466108543765476!GO:0016491;oxidoreductase activity;0.0473463405163081!GO:0030911;TPR domain binding;0.0479337884993207!GO:0005784;translocon complex;0.0479337884993207!GO:0007569;cell aging;0.0481920131424739!GO:0009112;nucleobase metabolic process;0.048334438314541!GO:0006509;membrane protein ectodomain proteolysis;0.0488500670128678!GO:0033619;membrane protein proteolysis;0.0488500670128678 | |||
|sample_id=10055 | |||
|sample_note= | |||
|sample_sex=female | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=uterus | |||
|top_motifs=MYBL2:2.63557593049;ZNF384:2.50080012854;TBP:2.45654330448;HBP1_HMGB_SSRP1_UBTF:2.44650011245;NKX2-3_NKX2-5:2.43206408597;TAL1_TCF{3,4,12}:2.42994042487;RBPJ:2.33071266631;PRDM1:2.27604996551;MAZ:2.18664862448;MZF1:2.15591842383;RXRA_VDR{dimer}:2.14349146575;CDC5L:2.08214380395;NKX2-1,4:2.05325789498;GATA4:1.92737682864;TFAP2{A,C}:1.85401055741;PATZ1:1.84918560649;FOXM1:1.70604733162;CDX1,2,4:1.70481400275;XCPE1{core}:1.70283046529;ZNF238:1.67245686051;MED-1{core}:1.66351439402;TEF:1.64942697125;GTF2I:1.64211147148;SRF:1.64157949207;IKZF2:1.62048862204;TFAP4:1.61617598495;IKZF1:1.54305135569;EP300:1.48753932679;FOXP1:1.48242896334;ZIC1..3:1.47572378276;SP1:1.47422062744;POU5F1:1.46420173337;KLF4:1.44776140643;T:1.43360296938;HMGA1,2:1.41688781656;MYFfamily:1.41328664898;HIC1:1.4114212416;SMAD1..7,9:1.38070118599;EGR1..3:1.35837041576;GZF1:1.35403472722;ALX1:1.33430008911;AIRE:1.31830688418;PAX5:1.26804061822;POU3F1..4:1.26512764779;SOX5:1.25197826829;GFI1:1.24582381337;FOXD3:1.19402575047;GCM1,2:1.19160373645;TFAP2B:1.17561426945;SPZ1:1.15638826506;XBP1:1.09333583857;POU1F1:1.03878859938;PAX4:0.998756981967;ESR1:0.997058257177;ZNF148:0.964792912147;VSX1,2:0.963400865505;NFATC1..3:0.947601349697;HOX{A6,A7,B6,B7}:0.927356328999;ZNF423:0.908857712062;TFCP2:0.904411427781;BREu{core}:0.903212575342;PAX6:0.891498422494;GFI1B:0.879608373182;MTE{core}:0.876796235968;HOX{A4,D4}:0.873314198564;TLX1..3_NFIC{dimer}:0.873271965194;GLI1..3:0.87270859889;TEAD1:0.835537947122;RREB1:0.826549088565;GTF2A1,2:0.790808975255;LEF1_TCF7_TCF7L1,2:0.763195215161;BPTF:0.752361151378;DBP:0.726565507259;FOXL1:0.722210473441;ADNP_IRX_SIX_ZHX:0.72181011226;ZBTB16:0.715750699653;LHX3,4:0.707600303685;ZFP161:0.691481390211;SOX2:0.687328977695;FOX{I1,J2}:0.677551588091;NR3C1:0.661137622092;SOX{8,9,10}:0.633077852387;NANOG:0.629996463302;PRRX1,2:0.615392533689;UFEwm:0.608446466084;NR6A1:0.606073672794;AR:0.600464133829;SNAI1..3:0.590376278896;LMO2:0.580177705168;TOPORS:0.575992048572;CUX2:0.571455698691;TBX4,5:0.568500397003;REST:0.485702216168;RFX1:0.4682164401;MTF1:0.441696654652;POU6F1:0.418859847307;HAND1,2:0.409476920002;NKX6-1,2:0.40165918715;TGIF1:0.390073353907;SOX17:0.378167284187;FOX{D1,D2}:0.366806456271;NR5A1,2:0.31985697699;TP53:0.302852595664;MEF2{A,B,C,D}:0.264584708988;TLX2:0.252809939124;ARID5B:0.242528532441;ATF2:0.202975564094;NR1H4:0.202847198674;NHLH1,2:0.198583642353;FOXN1:0.190162396011;TFDP1:0.134100625777;HMX1:0.128647547745;FOXO1,3,4:0.115741260391;E2F1..5:0.115389398275;RORA:0.103254273399;PAX3,7:0.102193445113;GATA6:0.070647787248;STAT1,3:0.0475530998455;ZNF143:0.0463217651762;ALX4:0.0406785097543;ZEB1:0.0358058253057;IRF7:0.0188977705163;HNF1A:0.00672354387044;HSF1,2:0.00591438005256;NFY{A,B,C}:-8.09596752957e-05;NRF1:-0.00589135999415;ONECUT1,2:-0.00728719812264;NKX3-1:-0.0205938006779;HIF1A:-0.0522305613998;ATF6:-0.0540887773983;NKX3-2:-0.0694494405568;FOXQ1:-0.0855223198726;EBF1:-0.0884317640179;PBX1:-0.095228518219;OCT4_SOX2{dimer}:-0.116266804494;PITX1..3:-0.121267155621;ZBTB6:-0.126046820708;RXR{A,B,G}:-0.141031734671;SPIB:-0.141420497437;POU2F1..3:-0.169363354782;PAX8:-0.185120931284;ETS1,2:-0.220026374821;JUN:-0.25432203011;STAT2,4,6:-0.256503762503;NANOG{mouse}:-0.274903909895;PDX1:-0.278418790259;FOXA2:-0.281508474461;FOXP3:-0.296449906775;HOX{A5,B5}:-0.304030170837;YY1:-0.341139743678;IRF1,2:-0.35337364008;ATF4:-0.360435210559;ELF1,2,4:-0.406252826356;EVI1:-0.409897906468;SREBF1,2:-0.413067054033;SPI1:-0.444752729573;HNF4A_NR2F1,2:-0.476213436232;CREB1:-0.495395919113;FOS_FOS{B,L1}_JUN{B,D}:-0.508180673162;AHR_ARNT_ARNT2:-0.518693318279;RFX2..5_RFXANK_RFXAP:-0.528073192878;PPARG:-0.575575089639;DMAP1_NCOR{1,2}_SMARC:-0.590762936276;HLF:-0.710576585667;NFKB1_REL_RELA:-0.730180071895;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.735158699647;FOSL2:-0.739549189028;NKX2-2,8:-0.813203140312;NFIX:-0.818516827145;BACH2:-0.83437450151;MYOD1:-0.841280993346;CEBPA,B_DDIT3:-0.930448081245;RUNX1..3:-0.931067915298;EN1,2:-0.947814672128;STAT5{A,B}:-0.9520778527;MAFB:-0.965412552501;PAX1,9:-0.982290185928;NFE2:-0.984658056196;FOX{F1,F2,J1}:-0.985617161304;MYB:-1.04271111551;HOXA9_MEIS1:-1.05487692975;ESRRA:-1.09697973492;ATF5_CREB3:-1.14439879664;CRX:-1.16095634047;NFIL3:-1.19005652763;ELK1,4_GABP{A,B1}:-1.21118829175;NFE2L2:-1.227660671;PAX2:-1.25053205598;HES1:-1.35064913107;NFE2L1:-1.52344422222;bHLH_family:-1.9622131209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.01983128225 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10055-101H1;search_select_hide=table117:FF:10055-101H1 | |||
}} | }} |
Latest revision as of 12:18, 3 June 2020
Name: | uterus, fetal, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11763 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11763
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11763
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.01 |
10 | 10 | 0.0443 |
100 | 100 | 0.311 |
101 | 101 | 0.53 |
102 | 102 | 0.526 |
103 | 103 | 0.247 |
104 | 104 | 0.712 |
105 | 105 | 0.873 |
106 | 106 | 0.238 |
107 | 107 | 0.678 |
108 | 108 | 0.877 |
109 | 109 | 0.00727 |
11 | 11 | 0.0801 |
110 | 110 | 0.191 |
111 | 111 | 0.0086 |
112 | 112 | 0.211 |
113 | 113 | 0.0367 |
114 | 114 | 7.1111e-4 |
115 | 115 | 0.184 |
116 | 116 | 0.933 |
117 | 117 | 0.00414 |
118 | 118 | 0.0792 |
119 | 119 | 0.409 |
12 | 12 | 0.278 |
120 | 120 | 0.388 |
121 | 121 | 0.751 |
122 | 122 | 0.306 |
123 | 123 | 0.0552 |
124 | 124 | 0.895 |
125 | 125 | 0.278 |
126 | 126 | 0.519 |
127 | 127 | 0.0687 |
128 | 128 | 0.543 |
129 | 129 | 0.775 |
13 | 13 | 0.0657 |
130 | 130 | 0.36 |
131 | 131 | 0.91 |
132 | 132 | 0.129 |
133 | 133 | 0.972 |
134 | 134 | 0.843 |
135 | 135 | 0.777 |
136 | 136 | 0.652 |
137 | 137 | 0.134 |
138 | 138 | 0.252 |
139 | 139 | 0.155 |
14 | 14 | 0.403 |
140 | 140 | 0.865 |
141 | 141 | 0.602 |
142 | 142 | 0.592 |
143 | 143 | 0.0209 |
144 | 144 | 0.777 |
145 | 145 | 0.839 |
146 | 146 | 0.412 |
147 | 147 | 0.821 |
148 | 148 | 0.0233 |
149 | 149 | 0.659 |
15 | 15 | 0.0275 |
150 | 150 | 0.486 |
151 | 151 | 0.357 |
152 | 152 | 0.222 |
153 | 153 | 0.846 |
154 | 154 | 0.913 |
155 | 155 | 0.0806 |
156 | 156 | 0.61 |
157 | 157 | 0.522 |
158 | 158 | 0.12 |
159 | 159 | 0.621 |
16 | 16 | 0.412 |
160 | 160 | 0.704 |
161 | 161 | 0.624 |
162 | 162 | 0.135 |
163 | 163 | 0.534 |
164 | 164 | 0.0444 |
165 | 165 | 0.441 |
166 | 166 | 0.0886 |
167 | 167 | 0.0261 |
168 | 168 | 0.242 |
169 | 169 | 0.0252 |
17 | 17 | 0.325 |
18 | 18 | 0.0299 |
19 | 19 | 1 |
2 | 2 | 0.602 |
20 | 20 | 0.231 |
21 | 21 | 0.399 |
22 | 22 | 0.465 |
23 | 23 | 0.666 |
24 | 24 | 0.108 |
25 | 25 | 0.31 |
26 | 26 | 0.0212 |
27 | 27 | 0.733 |
28 | 28 | 0.668 |
29 | 29 | 0.0208 |
3 | 3 | 0.213 |
30 | 30 | 0.135 |
31 | 31 | 0.843 |
32 | 32 | 0.0128 |
33 | 33 | 0.188 |
34 | 34 | 0.652 |
35 | 35 | 0.166 |
36 | 36 | 0.0205 |
37 | 37 | 0.0206 |
38 | 38 | 0.27 |
39 | 39 | 0.668 |
4 | 4 | 0.9 |
40 | 40 | 0.0635 |
41 | 41 | 0.0256 |
42 | 42 | 0.23 |
43 | 43 | 0.13 |
44 | 44 | 0.958 |
45 | 45 | 0.527 |
46 | 46 | 0.136 |
47 | 47 | 0.0539 |
48 | 48 | 0.227 |
49 | 49 | 0.108 |
5 | 5 | 0.27 |
50 | 50 | 0.936 |
51 | 51 | 0.565 |
52 | 52 | 0.712 |
53 | 53 | 0.815 |
54 | 54 | 0.668 |
55 | 55 | 0.602 |
56 | 56 | 0.511 |
57 | 57 | 0.198 |
58 | 58 | 0.408 |
59 | 59 | 0.354 |
6 | 6 | 0.963 |
60 | 60 | 0.402 |
61 | 61 | 0.352 |
62 | 62 | 0.218 |
63 | 63 | 0.398 |
64 | 64 | 0.36 |
65 | 65 | 0.324 |
66 | 66 | 0.757 |
67 | 67 | 0.468 |
68 | 68 | 0.448 |
69 | 69 | 0.606 |
7 | 7 | 0.153 |
70 | 70 | 0.0179 |
71 | 71 | 0.0477 |
72 | 72 | 0.313 |
73 | 73 | 0.0195 |
74 | 74 | 0.477 |
75 | 75 | 0.00437 |
76 | 76 | 0.136 |
77 | 77 | 0.813 |
78 | 78 | 0.172 |
79 | 79 | 0.822 |
8 | 8 | 0.09 |
80 | 80 | 0.581 |
81 | 81 | 0.676 |
82 | 82 | 0.373 |
83 | 83 | 0.596 |
84 | 84 | 0.725 |
85 | 85 | 0.327 |
86 | 86 | 0.0759 |
87 | 87 | 0.0188 |
88 | 88 | 0.801 |
89 | 89 | 0.312 |
9 | 9 | 0.826 |
90 | 90 | 0.177 |
91 | 91 | 0.502 |
92 | 92 | 0.433 |
93 | 93 | 0.202 |
94 | 94 | 0.0341 |
95 | 95 | 0.00602 |
96 | 96 | 0.0999 |
97 | 97 | 0.932 |
98 | 98 | 0.131 |
99 | 99 | 0.416 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11763
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010055 human uterus - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0005795 (embryonic uterus)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010055 (human uterus - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0005795 (embryonic uterus)