FF:10060-101H6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005566 | ||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005566 | |||
|accession_numbers=CAGE;DRX008748;DRR009620;DRZ001045;DRZ002430;DRZ012395;DRZ013780 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057152;DRR062911;DRZ007987 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002046,UBERON:0000479,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002530,UBERON:0010317,UBERON:0000949 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010060 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thyroid%252c%2520fetal%252c%2520donor1.CNhs11769.10060-101H6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thyroid%252c%2520fetal%252c%2520donor1.CNhs11769.10060-101H6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thyroid%252c%2520fetal%252c%2520donor1.CNhs11769.10060-101H6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thyroid%252c%2520fetal%252c%2520donor1.CNhs11769.10060-101H6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thyroid%252c%2520fetal%252c%2520donor1.CNhs11769.10060-101H6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10060-101H6 | |id=FF:10060-101H6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010060 | ||
|is_obsolete= | |||
|library_id=CNhs11769 | |||
|library_id_phase_based=2:CNhs11769 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10060 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10060 | |||
|name=thyroid, fetal, donor1 | |name=thyroid, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 63: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11769,LSID820,release009,COMPLETED | |profile_hcage=CNhs11769,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:RtHFN: Thyroid | |rna_catalog_number=Cat:RtHFN: Thyroid | ||
| Line 56: | Line 80: | ||
|rna_tube_id=101H6 | |rna_tube_id=101H6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=RDhi10095 | |||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 95: | ||
|sample_ethnicity=A? | |sample_ethnicity=A? | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.07380999800996e-206!GO:0005737;cytoplasm;5.60944413052051e-182!GO:0043226;organelle;1.57378462056579e-156!GO:0043229;intracellular organelle;3.67227440948006e-156!GO:0043231;intracellular membrane-bound organelle;2.55796779368763e-140!GO:0043227;membrane-bound organelle;2.80788495264501e-140!GO:0044444;cytoplasmic part;1.03559833288365e-124!GO:0044422;organelle part;1.18025039027347e-99!GO:0044446;intracellular organelle part;3.94055769710382e-98!GO:0005515;protein binding;2.46465672822805e-87!GO:0032991;macromolecular complex;4.59565762962441e-69!GO:0044238;primary metabolic process;2.05975709712722e-55!GO:0044237;cellular metabolic process;5.86443607964155e-54!GO:0043170;macromolecule metabolic process;3.38630388480415e-52!GO:0005739;mitochondrion;2.35592827652763e-50!GO:0030529;ribonucleoprotein complex;2.57667973088391e-48!GO:0043233;organelle lumen;1.54297043115846e-47!GO:0031974;membrane-enclosed lumen;1.54297043115846e-47!GO:0003723;RNA binding;3.63383478549743e-46!GO:0005634;nucleus;2.13333393881208e-45!GO:0031090;organelle membrane;6.91265185599533e-45!GO:0016043;cellular component organization and biogenesis;7.26325386246162e-44!GO:0044428;nuclear part;1.38892024664483e-43!GO:0015031;protein transport;1.12234391858066e-41!GO:0033036;macromolecule localization;3.23902293735294e-41!GO:0045184;establishment of protein localization;1.05172095664933e-38!GO:0008104;protein localization;1.29094110251068e-38!GO:0043234;protein complex;1.3526454274918e-38!GO:0019538;protein metabolic process;5.29650391459869e-38!GO:0044429;mitochondrial part;1.53689247143067e-35!GO:0031975;envelope;1.05657504150902e-33!GO:0031967;organelle envelope;1.30954466042785e-33!GO:0044260;cellular macromolecule metabolic process;1.93677015243056e-31!GO:0046907;intracellular transport;1.98922933658402e-31!GO:0044267;cellular protein metabolic process;5.94719469667912e-31!GO:0043283;biopolymer metabolic process;1.24197330278572e-29!GO:0005840;ribosome;3.72036337061448e-29!GO:0016071;mRNA metabolic process;1.35957433076087e-27!GO:0065003;macromolecular complex assembly;5.45920849384272e-27!GO:0006886;intracellular protein transport;6.50961212372994e-27!GO:0031981;nuclear lumen;1.83478499153344e-26!GO:0006396;RNA processing;2.25049324422203e-26!GO:0010467;gene expression;2.85177274087072e-26!GO:0005829;cytosol;2.85177274087072e-26!GO:0022607;cellular component assembly;3.61377833782676e-26!GO:0006412;translation;8.86509392848591e-26!GO:0008380;RNA splicing;1.28170855338015e-25!GO:0003735;structural constituent of ribosome;9.06116310483771e-25!GO:0005740;mitochondrial envelope;2.84436570107443e-24!GO:0019866;organelle inner membrane;7.27505548430486e-24!GO:0031966;mitochondrial membrane;7.47238832824508e-24!GO:0043228;non-membrane-bound organelle;4.60075115079579e-23!GO:0043232;intracellular non-membrane-bound organelle;4.60075115079579e-23!GO:0033279;ribosomal subunit;2.05794433417055e-22!GO:0005743;mitochondrial inner membrane;2.47394301995435e-22!GO:0006397;mRNA processing;2.94988777125125e-22!GO:0006996;organelle organization and biogenesis;3.76763866770402e-21!GO:0009059;macromolecule biosynthetic process;8.38630140432354e-21!GO:0006119;oxidative phosphorylation;8.38630140432354e-21!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.7036698006585e-20!GO:0009058;biosynthetic process;4.00319825436791e-20!GO:0005654;nucleoplasm;7.30463639512388e-20!GO:0051649;establishment of cellular localization;8.0468467135249e-20!GO:0051641;cellular localization;1.22138010176375e-19!GO:0005783;endoplasmic reticulum;5.55994968852865e-19!GO:0012505;endomembrane system;4.14320388257192e-18!GO:0044249;cellular biosynthetic process;4.14320388257192e-18!GO:0008134;transcription factor binding;6.79088188908236e-18!GO:0016192;vesicle-mediated transport;6.99847847043989e-18!GO:0005794;Golgi apparatus;7.06125340244572e-18!GO:0005746;mitochondrial respiratory chain;1.02514892634763e-17!GO:0044455;mitochondrial membrane part;1.64773230301232e-17!GO:0005681;spliceosome;1.65111668238983e-17!GO:0000166;nucleotide binding;2.0830925894155e-17!GO:0008092;cytoskeletal protein binding;3.09776910110079e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.05302663131901e-17!GO:0044451;nucleoplasm part;1.57781991751862e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.98068539100032e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.87297615169331e-15!GO:0003954;NADH dehydrogenase activity;1.87297615169331e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.87297615169331e-15!GO:0044445;cytosolic part;3.18481106639976e-15!GO:0048770;pigment granule;1.15656353980728e-14!GO:0042470;melanosome;1.15656353980728e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.50474300972243e-14!GO:0006511;ubiquitin-dependent protein catabolic process;3.40146946605571e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.49671671075114e-14!GO:0019941;modification-dependent protein catabolic process;5.32103711361773e-14!GO:0043632;modification-dependent macromolecule catabolic process;5.32103711361773e-14!GO:0031980;mitochondrial lumen;5.32103711361773e-14!GO:0005759;mitochondrial matrix;5.32103711361773e-14!GO:0044265;cellular macromolecule catabolic process;8.14364548682383e-14!GO:0044257;cellular protein catabolic process;8.76339566530582e-14!GO:0006512;ubiquitin cycle;1.08621366969387e-13!GO:0043412;biopolymer modification;1.08621366969387e-13!GO:0048193;Golgi vesicle transport;1.83918712004915e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.6487624778714e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.86140926632689e-13!GO:0045271;respiratory chain complex I;2.86140926632689e-13!GO:0005747;mitochondrial respiratory chain complex I;2.86140926632689e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.38158469537837e-13!GO:0042773;ATP synthesis coupled electron transport;4.38158469537837e-13!GO:0006605;protein targeting;7.59265862243139e-13!GO:0006457;protein folding;8.86833122522315e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.57240671446339e-13!GO:0006464;protein modification process;1.01287869524474e-12!GO:0006461;protein complex assembly;1.15261877126236e-12!GO:0022618;protein-RNA complex assembly;2.95779127827675e-12!GO:0016070;RNA metabolic process;3.18020759370216e-12!GO:0044432;endoplasmic reticulum part;3.18020759370216e-12!GO:0015935;small ribosomal subunit;3.34508249294857e-12!GO:0016462;pyrophosphatase activity;5.07501811542075e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.20691088875859e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;7.44870486042158e-12!GO:0003676;nucleic acid binding;1.11133162969899e-11!GO:0016874;ligase activity;2.30351365706624e-11!GO:0032553;ribonucleotide binding;2.5306418898413e-11!GO:0032555;purine ribonucleotide binding;2.5306418898413e-11!GO:0043687;post-translational protein modification;2.84893280960175e-11!GO:0017076;purine nucleotide binding;2.95399025447661e-11!GO:0015934;large ribosomal subunit;3.01690281903329e-11!GO:0017111;nucleoside-triphosphatase activity;3.09405557517221e-11!GO:0044248;cellular catabolic process;5.22468996813774e-11!GO:0003712;transcription cofactor activity;5.91038719900462e-11!GO:0030163;protein catabolic process;6.31053483321377e-11!GO:0043285;biopolymer catabolic process;6.4986676404329e-11!GO:0006366;transcription from RNA polymerase II promoter;9.60476237916559e-11!GO:0048523;negative regulation of cellular process;1.0754696092533e-10!GO:0030036;actin cytoskeleton organization and biogenesis;1.38278319745442e-10!GO:0009057;macromolecule catabolic process;1.98600743771446e-10!GO:0031965;nuclear membrane;2.38102148326186e-10!GO:0051186;cofactor metabolic process;2.58223871165938e-10!GO:0016604;nuclear body;2.61145813644882e-10!GO:0015629;actin cytoskeleton;3.62162770144787e-10!GO:0008135;translation factor activity, nucleic acid binding;3.62162770144787e-10!GO:0005635;nuclear envelope;5.22076738236723e-10!GO:0050794;regulation of cellular process;5.57396738287094e-10!GO:0051082;unfolded protein binding;5.74118539752566e-10!GO:0030029;actin filament-based process;7.98072751057684e-10!GO:0000502;proteasome complex (sensu Eukaryota);8.72454341035967e-10!GO:0008565;protein transporter activity;8.95739733941727e-10!GO:0006913;nucleocytoplasmic transport;1.26916287399185e-09!GO:0016607;nuclear speck;1.74247666533554e-09!GO:0019829;cation-transporting ATPase activity;1.83330675504503e-09!GO:0006259;DNA metabolic process;1.92716618954099e-09!GO:0005793;ER-Golgi intermediate compartment;2.0337183812062e-09!GO:0050789;regulation of biological process;2.15401611863532e-09!GO:0016564;transcription repressor activity;3.07909233446949e-09!GO:0051169;nuclear transport;3.28409756776816e-09!GO:0032559;adenyl ribonucleotide binding;3.30970300566007e-09!GO:0003779;actin binding;3.42576434555695e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.5631365691688e-09!GO:0005524;ATP binding;3.70048773808611e-09!GO:0031982;vesicle;4.26521502881591e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.9884454262727e-09!GO:0030554;adenyl nucleotide binding;5.04528612742851e-09!GO:0031410;cytoplasmic vesicle;7.64202197316387e-09!GO:0045333;cellular respiration;9.26433571170771e-09!GO:0048519;negative regulation of biological process;1.03621910226539e-08!GO:0006793;phosphorus metabolic process;1.38157377805857e-08!GO:0006796;phosphate metabolic process;1.38157377805857e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.67033575361263e-08!GO:0000375;RNA splicing, via transesterification reactions;1.67033575361263e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.67033575361263e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.92013561702247e-08!GO:0044431;Golgi apparatus part;2.03977879908263e-08!GO:0008639;small protein conjugating enzyme activity;2.26247123985727e-08!GO:0006446;regulation of translational initiation;2.26406232374042e-08!GO:0031988;membrane-bound vesicle;2.47105226331452e-08!GO:0006413;translational initiation;2.72826121408983e-08!GO:0004842;ubiquitin-protein ligase activity;2.81332249438709e-08!GO:0003743;translation initiation factor activity;3.11059349842009e-08!GO:0016023;cytoplasmic membrane-bound vesicle;4.1032246668649e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.27357280810986e-08!GO:0009060;aerobic respiration;4.82990179172775e-08!GO:0005761;mitochondrial ribosome;5.56049418606072e-08!GO:0000313;organellar ribosome;5.56049418606072e-08!GO:0005789;endoplasmic reticulum membrane;6.69921950925995e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.42497909422546e-08!GO:0005768;endosome;9.68782027367401e-08!GO:0006732;coenzyme metabolic process;9.83040387546218e-08!GO:0030120;vesicle coat;1.09095082936267e-07!GO:0030662;coated vesicle membrane;1.09095082936267e-07!GO:0009055;electron carrier activity;1.09364963733159e-07!GO:0017038;protein import;1.77153312204152e-07!GO:0016481;negative regulation of transcription;1.85981991733307e-07!GO:0007264;small GTPase mediated signal transduction;1.8767358377663e-07!GO:0016310;phosphorylation;1.9772618970912e-07!GO:0044453;nuclear membrane part;2.13300164232511e-07!GO:0048475;coated membrane;2.19976108946214e-07!GO:0030117;membrane coat;2.19976108946214e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.27790086673952e-07!GO:0019787;small conjugating protein ligase activity;2.81173763820481e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.95747261552699e-07!GO:0015986;ATP synthesis coupled proton transport;4.37883751720902e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.37883751720902e-07!GO:0012501;programmed cell death;4.43674684979377e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.61115120735749e-07!GO:0007010;cytoskeleton organization and biogenesis;4.82802917086457e-07!GO:0006915;apoptosis;5.72418013839863e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.33213964184288e-07!GO:0031324;negative regulation of cellular metabolic process;6.34600666889604e-07!GO:0016887;ATPase activity;6.45993027176453e-07!GO:0008219;cell death;6.89100183935074e-07!GO:0016265;death;6.89100183935074e-07!GO:0005730;nucleolus;7.46673854585375e-07!GO:0042623;ATPase activity, coupled;8.38821136988665e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.15762421067029e-07!GO:0003714;transcription corepressor activity;1.33594098571669e-06!GO:0006099;tricarboxylic acid cycle;1.40864794483142e-06!GO:0046356;acetyl-CoA catabolic process;1.40864794483142e-06!GO:0005788;endoplasmic reticulum lumen;1.42603262789685e-06!GO:0019899;enzyme binding;1.67883281417792e-06!GO:0006323;DNA packaging;1.84635937981142e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.89125641370564e-06!GO:0009892;negative regulation of metabolic process;1.94558967629527e-06!GO:0005643;nuclear pore;2.08829543677636e-06!GO:0005773;vacuole;2.53293902982864e-06!GO:0016044;membrane organization and biogenesis;2.80910138025177e-06!GO:0000139;Golgi membrane;3.15164429098162e-06!GO:0009056;catabolic process;3.50506102725389e-06!GO:0016568;chromatin modification;3.78460958464733e-06!GO:0005798;Golgi-associated vesicle;4.19598905908801e-06!GO:0045259;proton-transporting ATP synthase complex;4.52196839277295e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.83880927534686e-06!GO:0009144;purine nucleoside triphosphate metabolic process;4.83880927534686e-06!GO:0046034;ATP metabolic process;5.22336011428605e-06!GO:0000151;ubiquitin ligase complex;5.28470984964932e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.6479365147519e-06!GO:0006084;acetyl-CoA metabolic process;6.93037947595373e-06!GO:0009141;nucleoside triphosphate metabolic process;7.06508311187652e-06!GO:0006606;protein import into nucleus;7.3997249448803e-06!GO:0051170;nuclear import;7.54310981072423e-06!GO:0009199;ribonucleoside triphosphate metabolic process;7.91281927364803e-06!GO:0006163;purine nucleotide metabolic process;8.5270882104858e-06!GO:0016881;acid-amino acid ligase activity;9.1273776101074e-06!GO:0009150;purine ribonucleotide metabolic process;9.1273776101074e-06!GO:0015980;energy derivation by oxidation of organic compounds;9.4556897389187e-06!GO:0065007;biological regulation;9.76119012936564e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.1526696878033e-05!GO:0000323;lytic vacuole;1.48872089546208e-05!GO:0005764;lysosome;1.48872089546208e-05!GO:0051276;chromosome organization and biogenesis;1.51963311750974e-05!GO:0065002;intracellular protein transport across a membrane;1.55622463415886e-05!GO:0006754;ATP biosynthetic process;1.57610468198439e-05!GO:0006753;nucleoside phosphate metabolic process;1.57610468198439e-05!GO:0009259;ribonucleotide metabolic process;1.5851711479502e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.74492032361028e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.74492032361028e-05!GO:0009109;coenzyme catabolic process;1.94981044713209e-05!GO:0007265;Ras protein signal transduction;1.97730442830512e-05!GO:0005083;small GTPase regulator activity;2.05850049682867e-05!GO:0032446;protein modification by small protein conjugation;2.05951173960426e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.10620365497782e-05!GO:0051246;regulation of protein metabolic process;2.15173161083579e-05!GO:0031252;leading edge;2.6302266591643e-05!GO:0006403;RNA localization;2.76967387994971e-05!GO:0050657;nucleic acid transport;2.81220876939659e-05!GO:0051236;establishment of RNA localization;2.81220876939659e-05!GO:0050658;RNA transport;2.81220876939659e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.88736202285257e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.88736202285257e-05!GO:0030133;transport vesicle;3.17628009339102e-05!GO:0016567;protein ubiquitination;3.54408329904518e-05!GO:0051188;cofactor biosynthetic process;3.61605834938565e-05!GO:0043069;negative regulation of programmed cell death;4.46427069432747e-05!GO:0006897;endocytosis;4.48067603425745e-05!GO:0010324;membrane invagination;4.48067603425745e-05!GO:0006613;cotranslational protein targeting to membrane;4.68526687974762e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.73359501552043e-05!GO:0045892;negative regulation of transcription, DNA-dependent;4.80447566341067e-05!GO:0005856;cytoskeleton;4.98768115916968e-05!GO:0043066;negative regulation of apoptosis;5.19417067591179e-05!GO:0051789;response to protein stimulus;5.35114610957511e-05!GO:0006986;response to unfolded protein;5.35114610957511e-05!GO:0046930;pore complex;5.35165676739e-05!GO:0051187;cofactor catabolic process;5.43845691992654e-05!GO:0003713;transcription coactivator activity;5.73949392770819e-05!GO:0030695;GTPase regulator activity;5.94572446439849e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.0044758184564e-05!GO:0006164;purine nucleotide biosynthetic process;6.61926279177462e-05!GO:0009152;purine ribonucleotide biosynthetic process;7.35750100419198e-05!GO:0007049;cell cycle;7.62845911654051e-05!GO:0006091;generation of precursor metabolites and energy;8.2660950604473e-05!GO:0005770;late endosome;8.92916935745465e-05!GO:0043566;structure-specific DNA binding;9.29557341921343e-05!GO:0005667;transcription factor complex;9.30646043847642e-05!GO:0016563;transcription activator activity;9.62308665476756e-05!GO:0030532;small nuclear ribonucleoprotein complex;9.84171388201282e-05!GO:0015630;microtubule cytoskeleton;0.000106771786317751!GO:0006916;anti-apoptosis;0.000107156613048338!GO:0044449;contractile fiber part;0.00013351092327777!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000141016696008998!GO:0051128;regulation of cellular component organization and biogenesis;0.000142058388003042!GO:0048471;perinuclear region of cytoplasm;0.000153576850706002!GO:0030867;rough endoplasmic reticulum membrane;0.000157369833926145!GO:0051427;hormone receptor binding;0.000160805899240684!GO:0042802;identical protein binding;0.000188689616578314!GO:0051028;mRNA transport;0.000195422827292451!GO:0043623;cellular protein complex assembly;0.000202447517967933!GO:0000245;spliceosome assembly;0.000204640437433966!GO:0004386;helicase activity;0.000211901244331066!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000217297960719981!GO:0008654;phospholipid biosynthetic process;0.000218580211896438!GO:0009260;ribonucleotide biosynthetic process;0.000238039322625887!GO:0019222;regulation of metabolic process;0.000256574540789894!GO:0005905;coated pit;0.000264089079141561!GO:0003924;GTPase activity;0.000297997817792481!GO:0005839;proteasome core complex (sensu Eukaryota);0.000301071984753093!GO:0035257;nuclear hormone receptor binding;0.000301202592798815!GO:0008361;regulation of cell size;0.000307044848254958!GO:0044440;endosomal part;0.0003170145683113!GO:0010008;endosome membrane;0.0003170145683113!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000319716123663559!GO:0004812;aminoacyl-tRNA ligase activity;0.000319716123663559!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000319716123663559!GO:0016740;transferase activity;0.000329057054083071!GO:0016049;cell growth;0.000353148181350607!GO:0008307;structural constituent of muscle;0.000376814163616961!GO:0003697;single-stranded DNA binding;0.000384268463188433!GO:0007266;Rho protein signal transduction;0.000384756984202076!GO:0045786;negative regulation of progression through cell cycle;0.00038730742771324!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000393535742939636!GO:0015399;primary active transmembrane transporter activity;0.000393535742939636!GO:0043292;contractile fiber;0.000416592214362891!GO:0004576;oligosaccharyl transferase activity;0.000419997042198308!GO:0005791;rough endoplasmic reticulum;0.000445708919471951!GO:0009117;nucleotide metabolic process;0.000448412437982189!GO:0005769;early endosome;0.000451882608308121!GO:0005525;GTP binding;0.000457304669322865!GO:0065004;protein-DNA complex assembly;0.000546191321930003!GO:0009108;coenzyme biosynthetic process;0.000637502216488411!GO:0033116;ER-Golgi intermediate compartment membrane;0.000687945934399297!GO:0006612;protein targeting to membrane;0.000716725021113381!GO:0008250;oligosaccharyl transferase complex;0.000812202885789018!GO:0043038;amino acid activation;0.000813432275545098!GO:0006418;tRNA aminoacylation for protein translation;0.000813432275545098!GO:0043039;tRNA aminoacylation;0.000813432275545098!GO:0008026;ATP-dependent helicase activity;0.000833090461577205!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000833090461577205!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000897563420412828!GO:0006974;response to DNA damage stimulus;0.000934099978858363!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000958227053372872!GO:0005813;centrosome;0.000972697932141603!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000993383844337278!GO:0006752;group transfer coenzyme metabolic process;0.00101614677345977!GO:0004298;threonine endopeptidase activity;0.00109168629961494!GO:0030658;transport vesicle membrane;0.00109886642515834!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00109886642515834!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00109886642515834!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00109886642515834!GO:0009966;regulation of signal transduction;0.0011201979789418!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00114500250688656!GO:0006414;translational elongation;0.00114998001764478!GO:0005741;mitochondrial outer membrane;0.00115897781741199!GO:0007005;mitochondrion organization and biogenesis;0.00117927198830601!GO:0006333;chromatin assembly or disassembly;0.00125387780392341!GO:0042981;regulation of apoptosis;0.00126530579674224!GO:0008047;enzyme activator activity;0.00128111646043086!GO:0019867;outer membrane;0.00131936352727935!GO:0030118;clathrin coat;0.00132444728569009!GO:0001666;response to hypoxia;0.00142887386190824!GO:0008154;actin polymerization and/or depolymerization;0.0014618608267003!GO:0051920;peroxiredoxin activity;0.00154619408789813!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00162625810118887!GO:0015002;heme-copper terminal oxidase activity;0.00162625810118887!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00162625810118887!GO:0004129;cytochrome-c oxidase activity;0.00162625810118887!GO:0043492;ATPase activity, coupled to movement of substances;0.00166131831662482!GO:0031968;organelle outer membrane;0.00166131831662482!GO:0043067;regulation of programmed cell death;0.0017101003999567!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0017101003999567!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00176838373999752!GO:0005815;microtubule organizing center;0.00183644470608758!GO:0003690;double-stranded DNA binding;0.00183794666717554!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00189562697340087!GO:0006818;hydrogen transport;0.00193313178175176!GO:0030663;COPI coated vesicle membrane;0.00195072218849103!GO:0030126;COPI vesicle coat;0.00195072218849103!GO:0030027;lamellipodium;0.00202521588590238!GO:0015631;tubulin binding;0.00205035831894183!GO:0030016;myofibril;0.00211272549440228!GO:0045941;positive regulation of transcription;0.00219012695854012!GO:0005762;mitochondrial large ribosomal subunit;0.00221306004605081!GO:0000315;organellar large ribosomal subunit;0.00221306004605081!GO:0001558;regulation of cell growth;0.00222320560319916!GO:0032561;guanyl ribonucleotide binding;0.0022294400052108!GO:0019001;guanyl nucleotide binding;0.0022294400052108!GO:0016197;endosome transport;0.00223457098733813!GO:0045893;positive regulation of transcription, DNA-dependent;0.00232330110605823!GO:0016859;cis-trans isomerase activity;0.00234800655047482!GO:0006979;response to oxidative stress;0.00245403763402499!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00268812002590743!GO:0006402;mRNA catabolic process;0.00269090026300012!GO:0030134;ER to Golgi transport vesicle;0.00275175861092316!GO:0003724;RNA helicase activity;0.00278350362153848!GO:0022890;inorganic cation transmembrane transporter activity;0.00278350362153848!GO:0015992;proton transport;0.00279452425939551!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00282611336736544!GO:0005100;Rho GTPase activator activity;0.00311731247634432!GO:0019843;rRNA binding;0.00313185377637614!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00315726257898475!GO:0005096;GTPase activator activity;0.00318012780417269!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00320723797232075!GO:0033043;regulation of organelle organization and biogenesis;0.00320723797232075!GO:0009719;response to endogenous stimulus;0.00323711819059736!GO:0005048;signal sequence binding;0.00323859293952829!GO:0016301;kinase activity;0.00326898160349063!GO:0005865;striated muscle thin filament;0.00336553076888497!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00336553076888497!GO:0006650;glycerophospholipid metabolic process;0.00342579704620537!GO:0005885;Arp2/3 protein complex;0.00379612779346341!GO:0030660;Golgi-associated vesicle membrane;0.00393470810898636!GO:0051252;regulation of RNA metabolic process;0.00393470810898636!GO:0005581;collagen;0.00398931948527003!GO:0007242;intracellular signaling cascade;0.00415805625983341!GO:0046474;glycerophospholipid biosynthetic process;0.00419778928263918!GO:0043488;regulation of mRNA stability;0.00430892348358078!GO:0043487;regulation of RNA stability;0.00430892348358078!GO:0051168;nuclear export;0.00436096931894986!GO:0051726;regulation of cell cycle;0.00439785803057028!GO:0051287;NAD binding;0.0045230090932543!GO:0006891;intra-Golgi vesicle-mediated transport;0.00469191643816499!GO:0005099;Ras GTPase activator activity;0.00471315987235765!GO:0004674;protein serine/threonine kinase activity;0.00482020420784681!GO:0006281;DNA repair;0.0049458996827411!GO:0043021;ribonucleoprotein binding;0.00519982631595734!GO:0000074;regulation of progression through cell cycle;0.00526315833974353!GO:0045045;secretory pathway;0.00529417807171744!GO:0030132;clathrin coat of coated pit;0.00533564710247288!GO:0048500;signal recognition particle;0.00540406625580967!GO:0032594;protein transport within lipid bilayer;0.00540406625580967!GO:0032907;transforming growth factor-beta3 production;0.00540406625580967!GO:0032596;protein transport into lipid raft;0.00540406625580967!GO:0032910;regulation of transforming growth factor-beta3 production;0.00540406625580967!GO:0032595;B cell receptor transport within lipid bilayer;0.00540406625580967!GO:0033606;chemokine receptor transport within lipid bilayer;0.00540406625580967!GO:0032600;chemokine receptor transport out of lipid raft;0.00540406625580967!GO:0032599;protein transport out of lipid raft;0.00540406625580967!GO:0032597;B cell receptor transport into lipid raft;0.00540406625580967!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.00540406625580967!GO:0003729;mRNA binding;0.00541557927634163!GO:0030041;actin filament polymerization;0.00542928831963457!GO:0030127;COPII vesicle coat;0.00556085135970355!GO:0012507;ER to Golgi transport vesicle membrane;0.00556085135970355!GO:0051056;regulation of small GTPase mediated signal transduction;0.0057417730509742!GO:0030137;COPI-coated vesicle;0.00577862806770206!GO:0006399;tRNA metabolic process;0.00595844575547684!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00604295906037823!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00604295906037823!GO:0016491;oxidoreductase activity;0.0063768304751699!GO:0003702;RNA polymerase II transcription factor activity;0.00639324005885006!GO:0044420;extracellular matrix part;0.00656346708178848!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00684868798760453!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00688115654703748!GO:0030832;regulation of actin filament length;0.00704188340399141!GO:0042254;ribosome biogenesis and assembly;0.00751036930286182!GO:0018196;peptidyl-asparagine modification;0.00785361141739106!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00785361141739106!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.00788625460359228!GO:0031072;heat shock protein binding;0.00792183248683692!GO:0046983;protein dimerization activity;0.00814252475999574!GO:0045454;cell redox homeostasis;0.00828899815993224!GO:0030659;cytoplasmic vesicle membrane;0.00830188120453809!GO:0001726;ruffle;0.00833019928841635!GO:0032535;regulation of cellular component size;0.00833697077015345!GO:0007243;protein kinase cascade;0.00861747442505388!GO:0019904;protein domain specific binding;0.00909117127713409!GO:0000314;organellar small ribosomal subunit;0.00940186721897917!GO:0005763;mitochondrial small ribosomal subunit;0.00940186721897917!GO:0031323;regulation of cellular metabolic process;0.00948608298282227!GO:0022402;cell cycle process;0.00958922902522736!GO:0035258;steroid hormone receptor binding;0.00980539266267152!GO:0000059;protein import into nucleus, docking;0.0100331902777527!GO:0006260;DNA replication;0.0101386064792796!GO:0050662;coenzyme binding;0.0101801649137603!GO:0030119;AP-type membrane coat adaptor complex;0.0101876078447948!GO:0008139;nuclear localization sequence binding;0.0101876078447948!GO:0030017;sarcomere;0.0104066856335342!GO:0006350;transcription;0.010799586063692!GO:0046467;membrane lipid biosynthetic process;0.0109005060115227!GO:0007517;muscle development;0.0109333175495338!GO:0030518;steroid hormone receptor signaling pathway;0.0112471366456273!GO:0012506;vesicle membrane;0.0112864753436107!GO:0030131;clathrin adaptor complex;0.0114486954795829!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0115298552958768!GO:0006607;NLS-bearing substrate import into nucleus;0.0115819498411843!GO:0009081;branched chain family amino acid metabolic process;0.0118803330059027!GO:0048487;beta-tubulin binding;0.012291821784842!GO:0001725;stress fiber;0.0123563212345276!GO:0032432;actin filament bundle;0.0123563212345276!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0124277346266328!GO:0005586;collagen type III;0.012579426800002!GO:0006635;fatty acid beta-oxidation;0.0126096131158747!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0128047039035393!GO:0005862;muscle thin filament tropomyosin;0.0132069250443245!GO:0000785;chromatin;0.0134147146455194!GO:0006892;post-Golgi vesicle-mediated transport;0.0134830815042599!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0134862479909519!GO:0045047;protein targeting to ER;0.0134862479909519!GO:0008287;protein serine/threonine phosphatase complex;0.0138845027227352!GO:0030984;kininogen binding;0.0138845027227352!GO:0004213;cathepsin B activity;0.0138845027227352!GO:0017166;vinculin binding;0.0140362635380138!GO:0017022;myosin binding;0.0140362635380138!GO:0006839;mitochondrial transport;0.0144589433021108!GO:0033673;negative regulation of kinase activity;0.0148274123317757!GO:0006469;negative regulation of protein kinase activity;0.0148274123317757!GO:0005912;adherens junction;0.0148451391228277!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0153091499752655!GO:0044262;cellular carbohydrate metabolic process;0.015705521910791!GO:0044433;cytoplasmic vesicle part;0.0157605288013629!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0157606639072739!GO:0008286;insulin receptor signaling pathway;0.015910279293447!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0163251446952919!GO:0040008;regulation of growth;0.0168790237232382!GO:0043284;biopolymer biosynthetic process;0.0168896845390387!GO:0050811;GABA receptor binding;0.0168896845390387!GO:0010468;regulation of gene expression;0.0169561156631666!GO:0030031;cell projection biogenesis;0.0170791472064402!GO:0003746;translation elongation factor activity;0.0170793304481746!GO:0030125;clathrin vesicle coat;0.0171657280719886!GO:0030665;clathrin coated vesicle membrane;0.0171657280719886!GO:0030384;phosphoinositide metabolic process;0.0171657280719886!GO:0051087;chaperone binding;0.0171657280719886!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0174059377368628!GO:0046489;phosphoinositide biosynthetic process;0.017911340963959!GO:0030521;androgen receptor signaling pathway;0.0180681065612079!GO:0004447;iodide peroxidase activity;0.0187340963534735!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0192085594255837!GO:0046578;regulation of Ras protein signal transduction;0.0226440817942548!GO:0008022;protein C-terminus binding;0.0228709860996813!GO:0009083;branched chain family amino acid catabolic process;0.0230975943638684!GO:0008312;7S RNA binding;0.0234162288730365!GO:0006401;RNA catabolic process;0.023779844528636!GO:0016791;phosphoric monoester hydrolase activity;0.0244854772022998!GO:0031625;ubiquitin protein ligase binding;0.0249362409643439!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0249362409643439!GO:0031902;late endosome membrane;0.0255325143585117!GO:0008186;RNA-dependent ATPase activity;0.0256306303418645!GO:0016584;nucleosome positioning;0.0259580057190557!GO:0006984;ER-nuclear signaling pathway;0.0259605169500232!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0271197814739714!GO:0008270;zinc ion binding;0.0272708423588939!GO:0008017;microtubule binding;0.0272708423588939!GO:0008147;structural constituent of bone;0.0272751982012538!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0277715721063163!GO:0005583;fibrillar collagen;0.028436243574363!GO:0048522;positive regulation of cellular process;0.0284782351594505!GO:0016311;dephosphorylation;0.0288797344752759!GO:0051348;negative regulation of transferase activity;0.0290836930859664!GO:0031628;opioid receptor binding;0.0296787192316126!GO:0031852;mu-type opioid receptor binding;0.0296787192316126!GO:0043681;protein import into mitochondrion;0.0301895409268852!GO:0032940;secretion by cell;0.0301895409268852!GO:0005637;nuclear inner membrane;0.0303405389203649!GO:0005869;dynactin complex;0.0305736651123404!GO:0005774;vacuolar membrane;0.0306476183401136!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0312427085116647!GO:0005874;microtubule;0.0319803926223073!GO:0006334;nucleosome assembly;0.0321422328982652!GO:0005938;cell cortex;0.0322057608851138!GO:0030140;trans-Golgi network transport vesicle;0.0323168125041436!GO:0051539;4 iron, 4 sulfur cluster binding;0.0326573650771822!GO:0005159;insulin-like growth factor receptor binding;0.0341000561894388!GO:0000118;histone deacetylase complex;0.0341000561894388!GO:0016408;C-acyltransferase activity;0.0341747187015096!GO:0006611;protein export from nucleus;0.0352553395199511!GO:0030312;external encapsulating structure;0.0363723283353238!GO:0030522;intracellular receptor-mediated signaling pathway;0.0364255625516903!GO:0030911;TPR domain binding;0.0367326420433667!GO:0006376;mRNA splice site selection;0.0370509067029357!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0370509067029357!GO:0003756;protein disulfide isomerase activity;0.0383576990687312!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0383576990687312!GO:0016363;nuclear matrix;0.0391077937221493!GO:0031589;cell-substrate adhesion;0.0417739885093457!GO:0004721;phosphoprotein phosphatase activity;0.0425972296094188!GO:0016853;isomerase activity;0.0428937117016323!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0428937117016323!GO:0005694;chromosome;0.0435631817834616!GO:0003711;transcription elongation regulator activity;0.0438721593974079!GO:0022415;viral reproductive process;0.0440861247165938!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0446825377779242!GO:0005684;U2-dependent spliceosome;0.0449606053341971!GO:0030833;regulation of actin filament polymerization;0.0462110429637414!GO:0050681;androgen receptor binding;0.0467668695312398!GO:0035035;histone acetyltransferase binding;0.0467668695312398!GO:0006383;transcription from RNA polymerase III promoter;0.047114793062199!GO:0017091;AU-rich element binding;0.0474870235599975!GO:0050779;RNA destabilization;0.0474870235599975!GO:0000289;poly(A) tail shortening;0.0474870235599975!GO:0005784;translocon complex;0.0480285696596497!GO:0031901;early endosome membrane;0.0480463519662165!GO:0006509;membrane protein ectodomain proteolysis;0.0489453281936945!GO:0033619;membrane protein proteolysis;0.0489453281936945!GO:0006672;ceramide metabolic process;0.0496510225498771!GO:0030032;lamellipodium biogenesis;0.0497196135817513!GO:0030100;regulation of endocytosis;0.0499122854360111 | |||
|sample_id=10060 | |sample_id=10060 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 103: | ||
|sample_tissue=thyroid | |sample_tissue=thyroid | ||
|top_motifs=ZNF384:3.90255124684;SPZ1:2.66989305158;FOXP1:2.49021385507;FOXL1:2.25123886928;MEF2{A,B,C,D}:2.20063615164;PAX6:2.0277437856;HMGA1,2:1.89210827354;HOX{A4,D4}:1.82709560498;PITX1..3:1.82667140872;CDX1,2,4:1.79615636662;SOX5:1.77436191488;ZBTB16:1.73673249865;BPTF:1.70824146484;MAZ:1.69946941237;MYBL2:1.68516347067;FOXP3:1.65237923651;RBPJ:1.54787543443;IKZF2:1.54513465809;HIC1:1.50685023189;NR6A1:1.45182045154;NKX6-1,2:1.41637101095;FOXN1:1.41191516431;MTF1:1.3886885707;TOPORS:1.37795513477;TFAP2B:1.37282711391;SP1:1.36749117958;XBP1:1.3533326127;PAX5:1.27818719914;ZIC1..3:1.24548611141;ATF6:1.24203158955;MED-1{core}:1.22760005608;RREB1:1.22668116533;HSF1,2:1.21675593938;NKX2-1,4:1.21412818528;SNAI1..3:1.1855710623;NR1H4:1.11027686239;TFAP2{A,C}:1.10839637765;XCPE1{core}:1.08421586719;TGIF1:1.07470059087;CREB1:1.0488407313;GATA4:1.04257451101;ATF2:1.03139666176;FOXO1,3,4:1.0254777785;PRDM1:1.02515279886;ZEB1:1.01366708825;GCM1,2:0.995863117622;NFIX:0.989317190417;TBP:0.959716265137;LMO2:0.952979908953;POU6F1:0.916878391571;TEAD1:0.91441312315;PATZ1:0.902118222327;EGR1..3:0.901606506043;PAX1,9:0.891141731623;DBP:0.862796823861;POU3F1..4:0.834296934531;ZFP161:0.817865242623;LHX3,4:0.80922633448;MZF1:0.806031190056;FOX{D1,D2}:0.775253807387;KLF4:0.770095759238;TLX1..3_NFIC{dimer}:0.763954866242;SRF:0.753179037003;GTF2I:0.678224135692;NFATC1..3:0.677203840945;POU1F1:0.665936733136;FOXM1:0.651358711601;GTF2A1,2:0.638786999826;ATF4:0.635451352255;TBX4,5:0.61155688911;GFI1B:0.600673439765;ESR1:0.586571076438;HOX{A6,A7,B6,B7}:0.579810050005;BREu{core}:0.551934475251;CDC5L:0.540364478469;EP300:0.521468506891;MYOD1:0.517818651607;UFEwm:0.513316133951;RFX1:0.447943919376;NKX2-3_NKX2-5:0.44685831117;MTE{core}:0.411150096773;RXRA_VDR{dimer}:0.408402149856;NHLH1,2:0.397385303242;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.378894228454;FOXD3:0.373864933987;IKZF1:0.34033410801;MYFfamily:0.334912124462;GLI1..3:0.317219064999;T:0.316348999369;TEF:0.30791743026;PAX4:0.2669030626;CUX2:0.257752127505;STAT1,3:0.253685657991;NR5A1,2:0.251380248905;ALX1:0.239159037195;FOXA2:0.236186637693;SOX{8,9,10}:0.214582763643;SREBF1,2:0.204418251371;RFX2..5_RFXANK_RFXAP:0.192927113466;SMAD1..7,9:0.187627339593;EVI1:0.148240388005;REST:0.128651114492;AIRE:0.115715488506;NRF1:0.114054031817;TFCP2:0.0969351958255;TAL1_TCF{3,4,12}:0.0965491173459;JUN:0.092482957955;NKX3-1:0.086926238693;HBP1_HMGB_SSRP1_UBTF:0.0857983107725;FOX{I1,J2}:0.0472024805244;TFAP4:0.0260747461584;GZF1:0.0242924677274;ZNF143:0.0170949956117;RXR{A,B,G}:0.00647614562584;HOXA9_MEIS1:0.00252196779289;SOX17:-0.00388857724707;HAND1,2:-0.00394247207838;IRF7:-0.00451353097038;EN1,2:-0.0320511439134;STAT2,4,6:-0.0412790489063;ZBTB6:-0.0536812319739;TLX2:-0.0748128807275;ARID5B:-0.0770260274782;AR:-0.0899511252357;SOX2:-0.105097656454;NFY{A,B,C}:-0.136535184094;TFDP1:-0.139406698352;HIF1A:-0.142158382995;STAT5{A,B}:-0.148306140371;ONECUT1,2:-0.155765445663;PBX1:-0.167050434628;ZNF423:-0.170496623611;ELF1,2,4:-0.181154157115;VSX1,2:-0.207677400916;EBF1:-0.217741943723;ALX4:-0.233728305174;NKX3-2:-0.235489229571;ETS1,2:-0.260045762388;NR3C1:-0.291259285668;RORA:-0.291748163284;ATF5_CREB3:-0.291929728662;IRF1,2:-0.303677864047;HMX1:-0.319424412571;HNF1A:-0.320447505378;HNF4A_NR2F1,2:-0.320902559261;PAX3,7:-0.32263708762;SPI1:-0.33091471163;YY1:-0.347450484217;PPARG:-0.358160465999;SPIB:-0.380557421576;NANOG{mouse}:-0.385014077952;LEF1_TCF7_TCF7L1,2:-0.397059209725;MAFB:-0.402687970033;GFI1:-0.427248501914;NFIL3:-0.484385962563;TP53:-0.487565619308;ELK1,4_GABP{A,B1}:-0.513209514188;POU5F1:-0.560644989836;PDX1:-0.568684713324;FOX{F1,F2,J1}:-0.572092764847;PRRX1,2:-0.597299582699;PAX2:-0.618433241986;GATA6:-0.639615628083;FOXQ1:-0.663410305839;OCT4_SOX2{dimer}:-0.67623926431;NFKB1_REL_RELA:-0.717936450395;E2F1..5:-0.765275114399;ESRRA:-0.772730041534;HLF:-0.822583191134;ZNF238:-0.846487061875;HES1:-0.894078425607;ADNP_IRX_SIX_ZHX:-0.956048244468;NFE2:-0.962049086263;FOSL2:-0.982048724711;FOS_FOS{B,L1}_JUN{B,D}:-1.00293587005;RUNX1..3:-1.00706224348;NFE2L1:-1.03056812602;ZNF148:-1.06050027825;DMAP1_NCOR{1,2}_SMARC:-1.06259659868;NKX2-2,8:-1.08544272657;HOX{A5,B5}:-1.08923569451;BACH2:-1.09818140733;AHR_ARNT_ARNT2:-1.10239642227;NANOG:-1.10281983446;CEBPA,B_DDIT3:-1.14370308197;bHLH_family:-1.17276588729;NFE2L2:-1.27024387272;POU2F1..3:-1.48003571386;MYB:-1.48145394576;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.69971494993;PAX8:-1.89292718527;CRX:-2.07153462583 | |top_motifs=ZNF384:3.90255124684;SPZ1:2.66989305158;FOXP1:2.49021385507;FOXL1:2.25123886928;MEF2{A,B,C,D}:2.20063615164;PAX6:2.0277437856;HMGA1,2:1.89210827354;HOX{A4,D4}:1.82709560498;PITX1..3:1.82667140872;CDX1,2,4:1.79615636662;SOX5:1.77436191488;ZBTB16:1.73673249865;BPTF:1.70824146484;MAZ:1.69946941237;MYBL2:1.68516347067;FOXP3:1.65237923651;RBPJ:1.54787543443;IKZF2:1.54513465809;HIC1:1.50685023189;NR6A1:1.45182045154;NKX6-1,2:1.41637101095;FOXN1:1.41191516431;MTF1:1.3886885707;TOPORS:1.37795513477;TFAP2B:1.37282711391;SP1:1.36749117958;XBP1:1.3533326127;PAX5:1.27818719914;ZIC1..3:1.24548611141;ATF6:1.24203158955;MED-1{core}:1.22760005608;RREB1:1.22668116533;HSF1,2:1.21675593938;NKX2-1,4:1.21412818528;SNAI1..3:1.1855710623;NR1H4:1.11027686239;TFAP2{A,C}:1.10839637765;XCPE1{core}:1.08421586719;TGIF1:1.07470059087;CREB1:1.0488407313;GATA4:1.04257451101;ATF2:1.03139666176;FOXO1,3,4:1.0254777785;PRDM1:1.02515279886;ZEB1:1.01366708825;GCM1,2:0.995863117622;NFIX:0.989317190417;TBP:0.959716265137;LMO2:0.952979908953;POU6F1:0.916878391571;TEAD1:0.91441312315;PATZ1:0.902118222327;EGR1..3:0.901606506043;PAX1,9:0.891141731623;DBP:0.862796823861;POU3F1..4:0.834296934531;ZFP161:0.817865242623;LHX3,4:0.80922633448;MZF1:0.806031190056;FOX{D1,D2}:0.775253807387;KLF4:0.770095759238;TLX1..3_NFIC{dimer}:0.763954866242;SRF:0.753179037003;GTF2I:0.678224135692;NFATC1..3:0.677203840945;POU1F1:0.665936733136;FOXM1:0.651358711601;GTF2A1,2:0.638786999826;ATF4:0.635451352255;TBX4,5:0.61155688911;GFI1B:0.600673439765;ESR1:0.586571076438;HOX{A6,A7,B6,B7}:0.579810050005;BREu{core}:0.551934475251;CDC5L:0.540364478469;EP300:0.521468506891;MYOD1:0.517818651607;UFEwm:0.513316133951;RFX1:0.447943919376;NKX2-3_NKX2-5:0.44685831117;MTE{core}:0.411150096773;RXRA_VDR{dimer}:0.408402149856;NHLH1,2:0.397385303242;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.378894228454;FOXD3:0.373864933987;IKZF1:0.34033410801;MYFfamily:0.334912124462;GLI1..3:0.317219064999;T:0.316348999369;TEF:0.30791743026;PAX4:0.2669030626;CUX2:0.257752127505;STAT1,3:0.253685657991;NR5A1,2:0.251380248905;ALX1:0.239159037195;FOXA2:0.236186637693;SOX{8,9,10}:0.214582763643;SREBF1,2:0.204418251371;RFX2..5_RFXANK_RFXAP:0.192927113466;SMAD1..7,9:0.187627339593;EVI1:0.148240388005;REST:0.128651114492;AIRE:0.115715488506;NRF1:0.114054031817;TFCP2:0.0969351958255;TAL1_TCF{3,4,12}:0.0965491173459;JUN:0.092482957955;NKX3-1:0.086926238693;HBP1_HMGB_SSRP1_UBTF:0.0857983107725;FOX{I1,J2}:0.0472024805244;TFAP4:0.0260747461584;GZF1:0.0242924677274;ZNF143:0.0170949956117;RXR{A,B,G}:0.00647614562584;HOXA9_MEIS1:0.00252196779289;SOX17:-0.00388857724707;HAND1,2:-0.00394247207838;IRF7:-0.00451353097038;EN1,2:-0.0320511439134;STAT2,4,6:-0.0412790489063;ZBTB6:-0.0536812319739;TLX2:-0.0748128807275;ARID5B:-0.0770260274782;AR:-0.0899511252357;SOX2:-0.105097656454;NFY{A,B,C}:-0.136535184094;TFDP1:-0.139406698352;HIF1A:-0.142158382995;STAT5{A,B}:-0.148306140371;ONECUT1,2:-0.155765445663;PBX1:-0.167050434628;ZNF423:-0.170496623611;ELF1,2,4:-0.181154157115;VSX1,2:-0.207677400916;EBF1:-0.217741943723;ALX4:-0.233728305174;NKX3-2:-0.235489229571;ETS1,2:-0.260045762388;NR3C1:-0.291259285668;RORA:-0.291748163284;ATF5_CREB3:-0.291929728662;IRF1,2:-0.303677864047;HMX1:-0.319424412571;HNF1A:-0.320447505378;HNF4A_NR2F1,2:-0.320902559261;PAX3,7:-0.32263708762;SPI1:-0.33091471163;YY1:-0.347450484217;PPARG:-0.358160465999;SPIB:-0.380557421576;NANOG{mouse}:-0.385014077952;LEF1_TCF7_TCF7L1,2:-0.397059209725;MAFB:-0.402687970033;GFI1:-0.427248501914;NFIL3:-0.484385962563;TP53:-0.487565619308;ELK1,4_GABP{A,B1}:-0.513209514188;POU5F1:-0.560644989836;PDX1:-0.568684713324;FOX{F1,F2,J1}:-0.572092764847;PRRX1,2:-0.597299582699;PAX2:-0.618433241986;GATA6:-0.639615628083;FOXQ1:-0.663410305839;OCT4_SOX2{dimer}:-0.67623926431;NFKB1_REL_RELA:-0.717936450395;E2F1..5:-0.765275114399;ESRRA:-0.772730041534;HLF:-0.822583191134;ZNF238:-0.846487061875;HES1:-0.894078425607;ADNP_IRX_SIX_ZHX:-0.956048244468;NFE2:-0.962049086263;FOSL2:-0.982048724711;FOS_FOS{B,L1}_JUN{B,D}:-1.00293587005;RUNX1..3:-1.00706224348;NFE2L1:-1.03056812602;ZNF148:-1.06050027825;DMAP1_NCOR{1,2}_SMARC:-1.06259659868;NKX2-2,8:-1.08544272657;HOX{A5,B5}:-1.08923569451;BACH2:-1.09818140733;AHR_ARNT_ARNT2:-1.10239642227;NANOG:-1.10281983446;CEBPA,B_DDIT3:-1.14370308197;bHLH_family:-1.17276588729;NFE2L2:-1.27024387272;POU2F1..3:-1.48003571386;MYB:-1.48145394576;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.69971494993;PAX8:-1.89292718527;CRX:-2.07153462583 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10060-101H6;search_select_hide=table117:FF:10060-101H6 | |||
}} | }} | ||
Latest revision as of 12:18, 3 June 2020
| Name: | thyroid, fetal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11769 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11769
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11769
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.118 |
| 10 | 10 | 0.12 |
| 100 | 100 | 0.72 |
| 101 | 101 | 0.853 |
| 102 | 102 | 0.808 |
| 103 | 103 | 0.00932 |
| 104 | 104 | 0.53 |
| 105 | 105 | 0.94 |
| 106 | 106 | 0.128 |
| 107 | 107 | 0.533 |
| 108 | 108 | 0.946 |
| 109 | 109 | 0.00159 |
| 11 | 11 | 0.0385 |
| 110 | 110 | 0.141 |
| 111 | 111 | 0.476 |
| 112 | 112 | 0.955 |
| 113 | 113 | 0.0479 |
| 114 | 114 | 0.0562 |
| 115 | 115 | 0.998 |
| 116 | 116 | 0.991 |
| 117 | 117 | 0.0327 |
| 118 | 118 | 0.162 |
| 119 | 119 | 0.549 |
| 12 | 12 | 0.493 |
| 120 | 120 | 0.189 |
| 121 | 121 | 0.917 |
| 122 | 122 | 0.242 |
| 123 | 123 | 0.23 |
| 124 | 124 | 0.31 |
| 125 | 125 | 0.486 |
| 126 | 126 | 0.522 |
| 127 | 127 | 0.19 |
| 128 | 128 | 0.433 |
| 129 | 129 | 0.533 |
| 13 | 13 | 0.332 |
| 130 | 130 | 0.159 |
| 131 | 131 | 0.734 |
| 132 | 132 | 0.05 |
| 133 | 133 | 0.397 |
| 134 | 134 | 0.855 |
| 135 | 135 | 0.839 |
| 136 | 136 | 0.318 |
| 137 | 137 | 0.275 |
| 138 | 138 | 0.775 |
| 139 | 139 | 0.611 |
| 14 | 14 | 0.916 |
| 140 | 140 | 0.6 |
| 141 | 141 | 0.928 |
| 142 | 142 | 0.151 |
| 143 | 143 | 0.00699 |
| 144 | 144 | 0.709 |
| 145 | 145 | 0.652 |
| 146 | 146 | 0.156 |
| 147 | 147 | 0.774 |
| 148 | 148 | 0.101 |
| 149 | 149 | 0.666 |
| 15 | 15 | 0.121 |
| 150 | 150 | 0.258 |
| 151 | 151 | 0.53 |
| 152 | 152 | 0.597 |
| 153 | 153 | 0.953 |
| 154 | 154 | 0.833 |
| 155 | 155 | 0.474 |
| 156 | 156 | 0.742 |
| 157 | 157 | 0.441 |
| 158 | 158 | 0.295 |
| 159 | 159 | 0.126 |
| 16 | 16 | 0.136 |
| 160 | 160 | 0.354 |
| 161 | 161 | 0.42 |
| 162 | 162 | 0.619 |
| 163 | 163 | 0.0305 |
| 164 | 164 | 0.953 |
| 165 | 165 | 0.988 |
| 166 | 166 | 0.979 |
| 167 | 167 | 0.287 |
| 168 | 168 | 0.397 |
| 169 | 169 | 0.0476 |
| 17 | 17 | 0.0812 |
| 18 | 18 | 0.00334 |
| 19 | 19 | 0.575 |
| 2 | 2 | 0.968 |
| 20 | 20 | 0.55 |
| 21 | 21 | 0.706 |
| 22 | 22 | 0.211 |
| 23 | 23 | 0.232 |
| 24 | 24 | 0.116 |
| 25 | 25 | 0.585 |
| 26 | 26 | 0.0788 |
| 27 | 27 | 0.169 |
| 28 | 28 | 0.675 |
| 29 | 29 | 0.073 |
| 3 | 3 | 0.116 |
| 30 | 30 | 0.507 |
| 31 | 31 | 0.534 |
| 32 | 32 | 0.977 |
| 33 | 33 | 0.275 |
| 34 | 34 | 0.799 |
| 35 | 35 | 0.272 |
| 36 | 36 | 0.0303 |
| 37 | 37 | 0.0727 |
| 38 | 38 | 0.408 |
| 39 | 39 | 0.734 |
| 4 | 4 | 0.471 |
| 40 | 40 | 0.0742 |
| 41 | 41 | 0.0634 |
| 42 | 42 | 0.128 |
| 43 | 43 | 0.0378 |
| 44 | 44 | 0.652 |
| 45 | 45 | 0.646 |
| 46 | 46 | 0.0457 |
| 47 | 47 | 0.0463 |
| 48 | 48 | 0.0998 |
| 49 | 49 | 0.106 |
| 5 | 5 | 0.333 |
| 50 | 50 | 0.933 |
| 51 | 51 | 0.28 |
| 52 | 52 | 0.719 |
| 53 | 53 | 0.938 |
| 54 | 54 | 0.285 |
| 55 | 55 | 0.706 |
| 56 | 56 | 0.244 |
| 57 | 57 | 0.613 |
| 58 | 58 | 0.547 |
| 59 | 59 | 0.0956 |
| 6 | 6 | 0.8 |
| 60 | 60 | 0.437 |
| 61 | 61 | 0.217 |
| 62 | 62 | 0.159 |
| 63 | 63 | 0.584 |
| 64 | 64 | 0.143 |
| 65 | 65 | 0.258 |
| 66 | 66 | 0.0382 |
| 67 | 67 | 0.66 |
| 68 | 68 | 0.949 |
| 69 | 69 | 0.804 |
| 7 | 7 | 0.585 |
| 70 | 70 | 0.0562 |
| 71 | 71 | 0.0414 |
| 72 | 72 | 0.1 |
| 73 | 73 | 0.182 |
| 74 | 74 | 0.692 |
| 75 | 75 | 0.053 |
| 76 | 76 | 0.648 |
| 77 | 77 | 0.341 |
| 78 | 78 | 0.636 |
| 79 | 79 | 0.938 |
| 8 | 8 | 0.0648 |
| 80 | 80 | 0.118 |
| 81 | 81 | 0.29 |
| 82 | 82 | 0.527 |
| 83 | 83 | 0.349 |
| 84 | 84 | 0.851 |
| 85 | 85 | 0.442 |
| 86 | 86 | 0.252 |
| 87 | 87 | 1.45721e-4 |
| 88 | 88 | 0.91 |
| 89 | 89 | 0.398 |
| 9 | 9 | 0.201 |
| 90 | 90 | 0.201 |
| 91 | 91 | 0.378 |
| 92 | 92 | 0.818 |
| 93 | 93 | 0.815 |
| 94 | 94 | 0.0437 |
| 95 | 95 | 0.0104 |
| 96 | 96 | 0.319 |
| 97 | 97 | 0.884 |
| 98 | 98 | 0.71 |
| 99 | 99 | 0.79 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11769
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010060 human thyroid - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002046 (thyroid gland)
0000479 (tissue)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010060 (human thyroid - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0007123 (pharyngeal pouch 2)
UBERON:0010316 (germ layer / neural crest)
