FF:10100-102D1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005111 | ||
|accession_numbers=CAGE;DRX008756;DRR009628;DRZ001053;DRZ002438;DRZ012403;DRZ013788 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000995,UBERON:0006834,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010100 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520adult%252c%2520pool1.CNhs11676.10100-102D1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520adult%252c%2520pool1.CNhs11676.10100-102D1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520adult%252c%2520pool1.CNhs11676.10100-102D1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/uterus%252c%2520adult%252c%2520pool1.CNhs11676.10100-102D1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/uterus%252c%2520adult%252c%2520pool1.CNhs11676.10100-102D1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10100-102D1 | |id=FF:10100-102D1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010100 | ||
|is_obsolete= | |||
|library_id=CNhs11676 | |||
|library_id_phase_based=2:CNhs11676 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10100 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10100 | |||
|name=uterus, adult, pool1 | |name=uterus, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11676,LSID808,release008,COMPLETED | |profile_hcage=CNhs11676,LSID808,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number=Cat: 636643 Lot: 8101369A-20 | |rna_catalog_number=Cat: 636643 Lot: 8101369A-20 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.77214618075842e-230!GO:0005737;cytoplasm;1.51714522281266e-139!GO:0043226;organelle;7.07859233121509e-138!GO:0043229;intracellular organelle;1.6135730528704e-137!GO:0043227;membrane-bound organelle;3.82188482019832e-125!GO:0043231;intracellular membrane-bound organelle;3.82188482019832e-125!GO:0005515;protein binding;4.21113458253126e-99!GO:0044444;cytoplasmic part;1.39674173832837e-81!GO:0044422;organelle part;1.07656878555284e-69!GO:0044446;intracellular organelle part;1.86515238833271e-68!GO:0043170;macromolecule metabolic process;6.10359893632446e-59!GO:0032991;macromolecular complex;7.0222896626568e-57!GO:0044238;primary metabolic process;2.06499366566667e-55!GO:0005634;nucleus;1.80243691625415e-54!GO:0044237;cellular metabolic process;2.7512690603196e-52!GO:0003723;RNA binding;6.25260919586359e-47!GO:0030529;ribonucleoprotein complex;1.03559532356771e-44!GO:0016043;cellular component organization and biogenesis;3.90445045953623e-44!GO:0044428;nuclear part;1.020342033984e-42!GO:0043233;organelle lumen;8.27960754041346e-42!GO:0031974;membrane-enclosed lumen;8.27960754041346e-42!GO:0019538;protein metabolic process;4.92580392796238e-38!GO:0033036;macromolecule localization;3.61061319022558e-37!GO:0015031;protein transport;5.53102560278181e-37!GO:0043283;biopolymer metabolic process;2.19628801237623e-35!GO:0045184;establishment of protein localization;1.13812387672323e-34!GO:0008104;protein localization;7.26627349597407e-34!GO:0010467;gene expression;7.50202086498215e-33!GO:0044260;cellular macromolecule metabolic process;4.14511303227184e-32!GO:0044267;cellular protein metabolic process;1.84143278877823e-31!GO:0016071;mRNA metabolic process;8.46365901694916e-31!GO:0006396;RNA processing;4.59117468767079e-30!GO:0043234;protein complex;1.74026592917242e-29!GO:0005739;mitochondrion;3.28725585466462e-29!GO:0046907;intracellular transport;8.44303166192002e-29!GO:0031090;organelle membrane;9.06952066793194e-28!GO:0008380;RNA splicing;1.17787690256471e-27!GO:0031981;nuclear lumen;8.65704463266349e-27!GO:0006886;intracellular protein transport;9.59738578698342e-27!GO:0006397;mRNA processing;7.83779681817326e-26!GO:0005829;cytosol;1.20888971512359e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.62605817701893e-25!GO:0031967;organelle envelope;5.98510871769548e-23!GO:0031975;envelope;6.7031747690635e-23!GO:0005840;ribosome;8.03663771807259e-23!GO:0065003;macromolecular complex assembly;1.0379166280538e-22!GO:0006412;translation;1.73885685168333e-22!GO:0022607;cellular component assembly;6.49248346231991e-21!GO:0044429;mitochondrial part;8.83221115447614e-21!GO:0008134;transcription factor binding;2.57166299356973e-20!GO:0003735;structural constituent of ribosome;1.94489233415666e-19!GO:0051649;establishment of cellular localization;4.314851890837e-19!GO:0016070;RNA metabolic process;6.24010315627071e-19!GO:0051641;cellular localization;6.97057184102328e-19!GO:0005681;spliceosome;8.13682994764921e-19!GO:0005654;nucleoplasm;4.18667962992096e-18!GO:0033279;ribosomal subunit;8.73634533685422e-18!GO:0006996;organelle organization and biogenesis;1.4586695968136e-17!GO:0003676;nucleic acid binding;4.86503429447005e-17!GO:0043228;non-membrane-bound organelle;5.61019185125535e-17!GO:0043232;intracellular non-membrane-bound organelle;5.61019185125535e-17!GO:0050794;regulation of cellular process;1.54814706230323e-16!GO:0016192;vesicle-mediated transport;1.94528545193978e-16!GO:0044451;nucleoplasm part;8.36766566068591e-16!GO:0048770;pigment granule;1.27054776257425e-15!GO:0042470;melanosome;1.27054776257425e-15!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.14371735746164e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.2111058304041e-15!GO:0050789;regulation of biological process;8.61340579375188e-15!GO:0006512;ubiquitin cycle;1.04969533975205e-14!GO:0000166;nucleotide binding;1.37644368154327e-14!GO:0005740;mitochondrial envelope;1.51591299983924e-14!GO:0031966;mitochondrial membrane;3.12201983502506e-14!GO:0009059;macromolecule biosynthetic process;3.69003965922547e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;5.90386941469481e-14!GO:0048193;Golgi vesicle transport;9.69486065786433e-14!GO:0019866;organelle inner membrane;1.20180124124707e-13!GO:0005794;Golgi apparatus;1.26070354242123e-13!GO:0019941;modification-dependent protein catabolic process;1.26070354242123e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.26070354242123e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.35920904781737e-13!GO:0044257;cellular protein catabolic process;1.87326116622293e-13!GO:0048523;negative regulation of cellular process;1.87326116622293e-13!GO:0044445;cytosolic part;1.96428219892401e-13!GO:0006119;oxidative phosphorylation;2.4192576515967e-13!GO:0003712;transcription cofactor activity;4.86032158525335e-13!GO:0016874;ligase activity;6.07155650800653e-13!GO:0005783;endoplasmic reticulum;1.1264557510523e-12!GO:0005743;mitochondrial inner membrane;1.21104775825306e-12!GO:0043412;biopolymer modification;1.4782083007269e-12!GO:0006605;protein targeting;2.01798544161736e-12!GO:0043687;post-translational protein modification;2.29345126400626e-12!GO:0006457;protein folding;2.65442959067249e-12!GO:0016462;pyrophosphatase activity;7.6450234937664e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.02350995125955e-11!GO:0043285;biopolymer catabolic process;1.04418506023396e-11!GO:0048519;negative regulation of biological process;1.14985962008665e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;1.17677036866138e-11!GO:0012505;endomembrane system;1.37819206642437e-11!GO:0006464;protein modification process;1.39287446660338e-11!GO:0017111;nucleoside-triphosphatase activity;1.59985611685954e-11!GO:0022618;protein-RNA complex assembly;1.65841281211081e-11!GO:0030163;protein catabolic process;2.39680117306641e-11!GO:0044265;cellular macromolecule catabolic process;3.16416890185798e-11!GO:0009058;biosynthetic process;6.40826627403265e-11!GO:0044249;cellular biosynthetic process;6.83428503377209e-11!GO:0016604;nuclear body;7.90994084497263e-11!GO:0006366;transcription from RNA polymerase II promoter;1.03795992540341e-10!GO:0006913;nucleocytoplasmic transport;1.28171643584467e-10!GO:0006461;protein complex assembly;1.52015392816974e-10!GO:0008565;protein transporter activity;1.66136026735127e-10!GO:0065007;biological regulation;2.68535241798605e-10!GO:0051169;nuclear transport;3.17742059148267e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;4.38712461877421e-10!GO:0000375;RNA splicing, via transesterification reactions;4.38712461877421e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.38712461877421e-10!GO:0044455;mitochondrial membrane part;4.86647039757863e-10!GO:0016607;nuclear speck;4.8744892881538e-10!GO:0016564;transcription repressor activity;9.81621469162438e-10!GO:0008135;translation factor activity, nucleic acid binding;2.11200243750172e-09!GO:0032553;ribonucleotide binding;2.15119170502661e-09!GO:0032555;purine ribonucleotide binding;2.15119170502661e-09!GO:0015935;small ribosomal subunit;2.39075650632512e-09!GO:0051082;unfolded protein binding;2.50156080923454e-09!GO:0000502;proteasome complex (sensu Eukaryota);2.80902161534362e-09!GO:0015934;large ribosomal subunit;3.44503405437087e-09!GO:0005730;nucleolus;3.92021654179817e-09!GO:0005635;nuclear envelope;4.15107083446775e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.67520476423743e-09!GO:0017076;purine nucleotide binding;4.75676247951382e-09!GO:0006259;DNA metabolic process;6.04341105594555e-09!GO:0009057;macromolecule catabolic process;6.5430993446033e-09!GO:0005746;mitochondrial respiratory chain;8.12892364338557e-09!GO:0008639;small protein conjugating enzyme activity;8.36748862302387e-09!GO:0030036;actin cytoskeleton organization and biogenesis;8.50074318490216e-09!GO:0004842;ubiquitin-protein ligase activity;9.3372836970278e-09!GO:0031965;nuclear membrane;1.467637072196e-08!GO:0019787;small conjugating protein ligase activity;1.62982622497101e-08!GO:0050136;NADH dehydrogenase (quinone) activity;1.6739205255128e-08!GO:0003954;NADH dehydrogenase activity;1.6739205255128e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.6739205255128e-08!GO:0031980;mitochondrial lumen;2.2699489223563e-08!GO:0005759;mitochondrial matrix;2.2699489223563e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.98807829745229e-08!GO:0031252;leading edge;3.19892830398804e-08!GO:0044432;endoplasmic reticulum part;3.49651226413804e-08!GO:0012501;programmed cell death;4.86925793969673e-08!GO:0007264;small GTPase mediated signal transduction;5.33582152844356e-08!GO:0006446;regulation of translational initiation;6.64010263607551e-08!GO:0008219;cell death;6.64010263607551e-08!GO:0016265;death;6.64010263607551e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.69227534692835e-08!GO:0005793;ER-Golgi intermediate compartment;1.05962647351985e-07!GO:0006915;apoptosis;1.07524628198214e-07!GO:0006793;phosphorus metabolic process;1.1147023540948e-07!GO:0006796;phosphate metabolic process;1.1147023540948e-07!GO:0019899;enzyme binding;1.18478579105576e-07!GO:0031988;membrane-bound vesicle;1.35379566194888e-07!GO:0003714;transcription corepressor activity;1.36065460102191e-07!GO:0031982;vesicle;1.6082325277529e-07!GO:0017038;protein import;1.70624856788796e-07!GO:0030029;actin filament-based process;2.02607260426319e-07!GO:0019222;regulation of metabolic process;2.3155111814088e-07!GO:0042775;organelle ATP synthesis coupled electron transport;2.48520158245566e-07!GO:0042773;ATP synthesis coupled electron transport;2.48520158245566e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.5922850736023e-07!GO:0003743;translation initiation factor activity;2.59804077702016e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.82575700964354e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.84196494130052e-07!GO:0031324;negative regulation of cellular metabolic process;3.09007703707166e-07!GO:0031410;cytoplasmic vesicle;3.27874938909308e-07!GO:0044248;cellular catabolic process;3.37816446487194e-07!GO:0030964;NADH dehydrogenase complex (quinone);3.40368875585266e-07!GO:0045271;respiratory chain complex I;3.40368875585266e-07!GO:0005747;mitochondrial respiratory chain complex I;3.40368875585266e-07!GO:0008092;cytoskeletal protein binding;3.64091420487306e-07!GO:0016881;acid-amino acid ligase activity;3.9178564015926e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.77022530941115e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.98833271829079e-07!GO:0016481;negative regulation of transcription;6.02006818809904e-07!GO:0006413;translational initiation;6.66644242439574e-07!GO:0016049;cell growth;8.25988341627092e-07!GO:0006606;protein import into nucleus;9.30585133733053e-07!GO:0008361;regulation of cell size;1.14063218139681e-06!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.30147592411544e-06!GO:0051170;nuclear import;1.50375414314629e-06!GO:0003713;transcription coactivator activity;1.57764942807021e-06!GO:0048475;coated membrane;1.77394874682273e-06!GO:0030117;membrane coat;1.77394874682273e-06!GO:0045786;negative regulation of progression through cell cycle;2.10124377253538e-06!GO:0005768;endosome;2.30902233254568e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.43689554587824e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.44939635260817e-06!GO:0009892;negative regulation of metabolic process;2.6163470066052e-06!GO:0016310;phosphorylation;3.18060463141717e-06!GO:0016563;transcription activator activity;3.25896654478361e-06!GO:0032559;adenyl ribonucleotide binding;3.28810898853676e-06!GO:0004386;helicase activity;3.89289634360189e-06!GO:0005524;ATP binding;3.91450973764221e-06!GO:0008026;ATP-dependent helicase activity;4.10422781685991e-06!GO:0016887;ATPase activity;4.5121350493008e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;4.62065594292773e-06!GO:0044453;nuclear membrane part;4.84792077024758e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.42246623451729e-06!GO:0030120;vesicle coat;6.13298718544847e-06!GO:0030662;coated vesicle membrane;6.13298718544847e-06!GO:0006403;RNA localization;6.40650778636776e-06!GO:0016568;chromatin modification;6.52973997137201e-06!GO:0030554;adenyl nucleotide binding;7.61081084459291e-06!GO:0050657;nucleic acid transport;7.65304357589647e-06!GO:0051236;establishment of RNA localization;7.65304357589647e-06!GO:0050658;RNA transport;7.65304357589647e-06!GO:0003924;GTPase activity;9.74288795306995e-06!GO:0009060;aerobic respiration;1.02862374107291e-05!GO:0045333;cellular respiration;1.18313092500691e-05!GO:0042623;ATPase activity, coupled;1.22113657795468e-05!GO:0051789;response to protein stimulus;1.2577102409084e-05!GO:0006986;response to unfolded protein;1.2577102409084e-05!GO:0051246;regulation of protein metabolic process;1.38288439310143e-05!GO:0005643;nuclear pore;1.42430857080774e-05!GO:0007265;Ras protein signal transduction;1.47518303182179e-05!GO:0005525;GTP binding;1.51956799133873e-05!GO:0005788;endoplasmic reticulum lumen;1.52385307234318e-05!GO:0006323;DNA packaging;1.58290748705443e-05!GO:0015986;ATP synthesis coupled proton transport;1.87876498280249e-05!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.87876498280249e-05!GO:0043566;structure-specific DNA binding;2.04876297072555e-05!GO:0005761;mitochondrial ribosome;2.07135576888484e-05!GO:0000313;organellar ribosome;2.07135576888484e-05!GO:0019829;cation-transporting ATPase activity;2.4130737101327e-05!GO:0031323;regulation of cellular metabolic process;2.50970123300338e-05!GO:0006350;transcription;2.84362776136012e-05!GO:0007243;protein kinase cascade;3.21886508924221e-05!GO:0005083;small GTPase regulator activity;3.48475397470203e-05!GO:0001558;regulation of cell growth;3.53522190418418e-05!GO:0006916;anti-apoptosis;3.53522190418418e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.70292179780988e-05!GO:0030027;lamellipodium;3.73664853959353e-05!GO:0043069;negative regulation of programmed cell death;4.34929051856752e-05!GO:0016044;membrane organization and biogenesis;4.38530492824548e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.43881118778862e-05!GO:0006613;cotranslational protein targeting to membrane;4.57112109416451e-05!GO:0005770;late endosome;5.15072639192004e-05!GO:0009055;electron carrier activity;5.24819297531061e-05!GO:0005789;endoplasmic reticulum membrane;5.71462211653752e-05!GO:0000245;spliceosome assembly;6.0375973768392e-05!GO:0045892;negative regulation of transcription, DNA-dependent;6.31202635904414e-05!GO:0009966;regulation of signal transduction;6.47553176531237e-05!GO:0010468;regulation of gene expression;6.47553176531237e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.08345692258605e-05!GO:0005773;vacuole;7.26325577413245e-05!GO:0005798;Golgi-associated vesicle;7.3567863016746e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.40592759484156e-05!GO:0043066;negative regulation of apoptosis;7.46902316357501e-05!GO:0030695;GTPase regulator activity;7.84892539980933e-05!GO:0051427;hormone receptor binding;7.84892539980933e-05!GO:0016469;proton-transporting two-sector ATPase complex;8.03204590153096e-05!GO:0006099;tricarboxylic acid cycle;8.43989138102112e-05!GO:0046356;acetyl-CoA catabolic process;8.43989138102112e-05!GO:0000151;ubiquitin ligase complex;9.06448208476845e-05!GO:0032561;guanyl ribonucleotide binding;9.52400848286157e-05!GO:0019001;guanyl nucleotide binding;9.52400848286157e-05!GO:0045259;proton-transporting ATP synthase complex;0.000110312347689215!GO:0044440;endosomal part;0.000110312347689215!GO:0010008;endosome membrane;0.000110312347689215!GO:0051028;mRNA transport;0.000110908377723784!GO:0042254;ribosome biogenesis and assembly;0.000116269201922479!GO:0003724;RNA helicase activity;0.000116446877703068!GO:0000074;regulation of progression through cell cycle;0.000116500169585198!GO:0051726;regulation of cell cycle;0.000118701692930884!GO:0007010;cytoskeleton organization and biogenesis;0.000118889404188005!GO:0030133;transport vesicle;0.000123222665263219!GO:0035257;nuclear hormone receptor binding;0.000149207115832481!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000156044457424176!GO:0044431;Golgi apparatus part;0.000166540708005346!GO:0030532;small nuclear ribonucleoprotein complex;0.000167258671051928!GO:0009142;nucleoside triphosphate biosynthetic process;0.000194934852098903!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000194934852098903!GO:0003779;actin binding;0.000199709950960662!GO:0032446;protein modification by small protein conjugation;0.000232445706147801!GO:0003697;single-stranded DNA binding;0.000237199157381894!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000253249304453888!GO:0065002;intracellular protein transport across a membrane;0.0002580678398391!GO:0046930;pore complex;0.000279711069566467!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000280772741492651!GO:0005791;rough endoplasmic reticulum;0.000284554841228546!GO:0007049;cell cycle;0.000294989106730283!GO:0000323;lytic vacuole;0.000294989106730283!GO:0005764;lysosome;0.000294989106730283!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000348109680450749!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000348109680450749!GO:0048471;perinuclear region of cytoplasm;0.000353538056423371!GO:0032774;RNA biosynthetic process;0.000356113254754995!GO:0006974;response to DNA damage stimulus;0.000382113036165267!GO:0009199;ribonucleoside triphosphate metabolic process;0.000384649992325665!GO:0006084;acetyl-CoA metabolic process;0.000392363807350223!GO:0006351;transcription, DNA-dependent;0.000401245904985777!GO:0006754;ATP biosynthetic process;0.000401245904985777!GO:0006753;nucleoside phosphate metabolic process;0.000401245904985777!GO:0051186;cofactor metabolic process;0.000406069831032042!GO:0016567;protein ubiquitination;0.000415466447586963!GO:0016197;endosome transport;0.000426946209791591!GO:0030867;rough endoplasmic reticulum membrane;0.000438830524833815!GO:0045045;secretory pathway;0.000444005295322883!GO:0007242;intracellular signaling cascade;0.000444160453989454!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000451714073772936!GO:0004812;aminoacyl-tRNA ligase activity;0.000451714073772936!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000451714073772936!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000462749507779497!GO:0051276;chromosome organization and biogenesis;0.000469504528697985!GO:0009259;ribonucleotide metabolic process;0.000469980298406079!GO:0009141;nucleoside triphosphate metabolic process;0.000470165283788132!GO:0009109;coenzyme catabolic process;0.000496548228719887!GO:0030518;steroid hormone receptor signaling pathway;0.000498134718920629!GO:0008654;phospholipid biosynthetic process;0.00050840408488365!GO:0042981;regulation of apoptosis;0.000544667938185088!GO:0009150;purine ribonucleotide metabolic process;0.000551718987931624!GO:0043067;regulation of programmed cell death;0.000591176509784258!GO:0009056;catabolic process;0.000598099655125953!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000632299665452686!GO:0009144;purine nucleoside triphosphate metabolic process;0.000632299665452686!GO:0043623;cellular protein complex assembly;0.000637298156822601!GO:0009152;purine ribonucleotide biosynthetic process;0.000682357868523763!GO:0045449;regulation of transcription;0.000756767677046164!GO:0005839;proteasome core complex (sensu Eukaryota);0.000759411594342121!GO:0005813;centrosome;0.000763473982550839!GO:0006612;protein targeting to membrane;0.000804351578915195!GO:0009260;ribonucleotide biosynthetic process;0.00081817025990485!GO:0043038;amino acid activation;0.000822069961122616!GO:0006418;tRNA aminoacylation for protein translation;0.000822069961122616!GO:0043039;tRNA aminoacylation;0.000822069961122616!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000850391082776188!GO:0015980;energy derivation by oxidation of organic compounds;0.000902699363295752!GO:0006163;purine nucleotide metabolic process;0.000910953775724886!GO:0005667;transcription factor complex;0.000918526404676941!GO:0035258;steroid hormone receptor binding;0.000918526404676941!GO:0005912;adherens junction;0.000928285600216506!GO:0046034;ATP metabolic process;0.000955686599664953!GO:0006402;mRNA catabolic process;0.000960073181235822!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000970506762534424!GO:0001726;ruffle;0.000989994977926176!GO:0006897;endocytosis;0.00103923328993459!GO:0010324;membrane invagination;0.00103923328993459!GO:0042802;identical protein binding;0.00108356957418172!GO:0008047;enzyme activator activity;0.00109539745733321!GO:0006164;purine nucleotide biosynthetic process;0.00118981076205344!GO:0008286;insulin receptor signaling pathway;0.00129597713055957!GO:0006891;intra-Golgi vesicle-mediated transport;0.00130328543643546!GO:0048522;positive regulation of cellular process;0.00131952895353543!GO:0005096;GTPase activator activity;0.00132178201720099!GO:0008250;oligosaccharyl transferase complex;0.00135227816713269!GO:0051128;regulation of cellular component organization and biogenesis;0.00141740146380524!GO:0003690;double-stranded DNA binding;0.00145077202842856!GO:0004298;threonine endopeptidase activity;0.00146809038957223!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00166223428376046!GO:0003702;RNA polymerase II transcription factor activity;0.00170176199264105!GO:0015078;hydrogen ion transmembrane transporter activity;0.0017083459663228!GO:0008186;RNA-dependent ATPase activity;0.0017204317040606!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00172527285595618!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00172527285595618!GO:0051187;cofactor catabolic process;0.00174237248110543!GO:0008270;zinc ion binding;0.00177108543083049!GO:0005769;early endosome;0.00190258738527783!GO:0005815;microtubule organizing center;0.0020119081103652!GO:0006732;coenzyme metabolic process;0.00202538140601043!GO:0040008;regulation of growth;0.00207378104419109!GO:0045893;positive regulation of transcription, DNA-dependent;0.00208247455267242!GO:0007266;Rho protein signal transduction;0.0020910174912781!GO:0005905;coated pit;0.00237833494871476!GO:0051168;nuclear export;0.00237833494871476!GO:0008287;protein serine/threonine phosphatase complex;0.00247797523267913!GO:0004576;oligosaccharyl transferase activity;0.00284536805323686!GO:0032940;secretion by cell;0.00292255586721205!GO:0051920;peroxiredoxin activity;0.00303538041020929!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00304369188800261!GO:0006355;regulation of transcription, DNA-dependent;0.00311048595960969!GO:0030134;ER to Golgi transport vesicle;0.00311646423001447!GO:0033116;ER-Golgi intermediate compartment membrane;0.00312058070060499!GO:0008154;actin polymerization and/or depolymerization;0.00314370078802897!GO:0043021;ribonucleoprotein binding;0.00318202084157894!GO:0030522;intracellular receptor-mediated signaling pathway;0.00329007968874741!GO:0030118;clathrin coat;0.00360369485151606!GO:0030521;androgen receptor signaling pathway;0.0037758722401625!GO:0000902;cell morphogenesis;0.0037876140512047!GO:0032989;cellular structure morphogenesis;0.0037876140512047!GO:0005856;cytoskeleton;0.00380696816129754!GO:0009719;response to endogenous stimulus;0.00386384422699137!GO:0006333;chromatin assembly or disassembly;0.00387028539654832!GO:0051087;chaperone binding;0.00388413948093565!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00398887194617766!GO:0007050;cell cycle arrest;0.00413109287641088!GO:0045792;negative regulation of cell size;0.00422529590242885!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00422529590242885!GO:0031589;cell-substrate adhesion;0.00423871463471486!GO:0005741;mitochondrial outer membrane;0.0045329853661194!GO:0017166;vinculin binding;0.0045329853661194!GO:0030127;COPII vesicle coat;0.00465490072500085!GO:0012507;ER to Golgi transport vesicle membrane;0.00465490072500085!GO:0004004;ATP-dependent RNA helicase activity;0.00474103076399811!GO:0006281;DNA repair;0.0048426969236895!GO:0015630;microtubule cytoskeleton;0.00496354314277269!GO:0003729;mRNA binding;0.00500334375196009!GO:0033673;negative regulation of kinase activity;0.00503787920205457!GO:0006469;negative regulation of protein kinase activity;0.00503787920205457!GO:0016859;cis-trans isomerase activity;0.00506944383535857!GO:0045941;positive regulation of transcription;0.00518722940525525!GO:0051252;regulation of RNA metabolic process;0.00522466311662988!GO:0030308;negative regulation of cell growth;0.0052897958979525!GO:0005885;Arp2/3 protein complex;0.00569209427216068!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00596886647170602!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00604513772840329!GO:0048500;signal recognition particle;0.00616874001410965!GO:0007160;cell-matrix adhesion;0.0064974905191844!GO:0016363;nuclear matrix;0.00654175014575137!GO:0019843;rRNA binding;0.00654175014575137!GO:0006414;translational elongation;0.00669303887112594!GO:0006399;tRNA metabolic process;0.00694661415997687!GO:0005100;Rho GTPase activator activity;0.00710010976325791!GO:0000139;Golgi membrane;0.00710959414515851!GO:0048518;positive regulation of biological process;0.00714910530254547!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00716729044163257!GO:0051270;regulation of cell motility;0.00726288581782817!GO:0006364;rRNA processing;0.00732066872108255!GO:0019904;protein domain specific binding;0.00736568220328709!GO:0030041;actin filament polymerization;0.00742371701501604!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00742371701501604!GO:0030658;transport vesicle membrane;0.00744240087077399!GO:0006607;NLS-bearing substrate import into nucleus;0.00794120156247194!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00819248288468115!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00819248288468115!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00819248288468115!GO:0001725;stress fiber;0.00819421227542136!GO:0032432;actin filament bundle;0.00819421227542136!GO:0030663;COPI coated vesicle membrane;0.00819421227542136!GO:0030126;COPI vesicle coat;0.00819421227542136!GO:0031968;organelle outer membrane;0.00819421227542136!GO:0019867;outer membrane;0.00856750291545126!GO:0005099;Ras GTPase activator activity;0.00877262915557829!GO:0005048;signal sequence binding;0.00889548814979462!GO:0043488;regulation of mRNA stability;0.0093643332769099!GO:0043487;regulation of RNA stability;0.0093643332769099!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00937980186175456!GO:0016072;rRNA metabolic process;0.00962926853568296!GO:0007005;mitochondrion organization and biogenesis;0.00969290664076879!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00984779540597226!GO:0006892;post-Golgi vesicle-mediated transport;0.010119939586434!GO:0065004;protein-DNA complex assembly;0.0102031767254838!GO:0005938;cell cortex;0.0106886360153073!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0108550928951836!GO:0051348;negative regulation of transferase activity;0.0109514936004144!GO:0007167;enzyme linked receptor protein signaling pathway;0.0111934956078252!GO:0044420;extracellular matrix part;0.0112351364899785!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.011634008270423!GO:0022402;cell cycle process;0.0118336502841071!GO:0018196;peptidyl-asparagine modification;0.0119500183475821!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0119500183475821!GO:0031902;late endosome membrane;0.0123774726014858!GO:0006650;glycerophospholipid metabolic process;0.0124604341441102!GO:0008601;protein phosphatase type 2A regulator activity;0.013111778832552!GO:0065009;regulation of a molecular function;0.0132760551193348!GO:0051056;regulation of small GTPase mediated signal transduction;0.0134624665350335!GO:0005581;collagen;0.0141906506069137!GO:0015629;actin cytoskeleton;0.0142812551368897!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0148221936910338!GO:0045047;protein targeting to ER;0.0148221936910338!GO:0051287;NAD binding;0.0149279393465802!GO:0030384;phosphoinositide metabolic process;0.0154393861561943!GO:0008139;nuclear localization sequence binding;0.0155290292208731!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0168387250647809!GO:0006401;RNA catabolic process;0.0177010212497796!GO:0046474;glycerophospholipid biosynthetic process;0.018370480953268!GO:0040011;locomotion;0.018370480953268!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.018370480953268!GO:0031901;early endosome membrane;0.0185179367255845!GO:0050681;androgen receptor binding;0.0191082084503211!GO:0040012;regulation of locomotion;0.0191082084503211!GO:0031625;ubiquitin protein ligase binding;0.0194312148863432!GO:0051188;cofactor biosynthetic process;0.0194522957058271!GO:0006950;response to stress;0.0195714859805035!GO:0030137;COPI-coated vesicle;0.0200125735585425!GO:0008312;7S RNA binding;0.0204412036131438!GO:0000059;protein import into nucleus, docking;0.0210893925495509!GO:0048468;cell development;0.0212284643967006!GO:0005925;focal adhesion;0.021312861069462!GO:0047485;protein N-terminus binding;0.0215039106502559!GO:0030241;muscle thick filament assembly;0.0220139969000034!GO:0031034;myosin filament assembly;0.0220139969000034!GO:0031033;myosin filament assembly or disassembly;0.0220139969000034!GO:0048739;cardiac muscle fiber development;0.0220139969000034!GO:0000118;histone deacetylase complex;0.0229394018716655!GO:0006260;DNA replication;0.023281618248065!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0233797782868864!GO:0015399;primary active transmembrane transporter activity;0.0233797782868864!GO:0009967;positive regulation of signal transduction;0.0242126713687086!GO:0031072;heat shock protein binding;0.0243373385089177!GO:0001527;microfibril;0.0243757369800427!GO:0046578;regulation of Ras protein signal transduction;0.0246036814312074!GO:0030660;Golgi-associated vesicle membrane;0.0254074774900962!GO:0048660;regulation of smooth muscle cell proliferation;0.0256365076362806!GO:0005869;dynactin complex;0.0259692541531072!GO:0043087;regulation of GTPase activity;0.0259692541531072!GO:0045098;type III intermediate filament;0.0259970894370203!GO:0009117;nucleotide metabolic process;0.0264039684779375!GO:0031124;mRNA 3'-end processing;0.0269264749031985!GO:0030132;clathrin coat of coated pit;0.0282620880155924!GO:0045926;negative regulation of growth;0.0282620880155924!GO:0030055;cell-matrix junction;0.0282639867491412!GO:0005924;cell-substrate adherens junction;0.028439950691413!GO:0043204;perikaryon;0.0291089862270944!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0299303679539989!GO:0004722;protein serine/threonine phosphatase activity;0.0299670592716664!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0299780346524749!GO:0005862;muscle thin filament tropomyosin;0.0300022771015267!GO:0008147;structural constituent of bone;0.0301298509982817!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0301612964117647!GO:0030119;AP-type membrane coat adaptor complex;0.0302546632256642!GO:0019902;phosphatase binding;0.0303013392113222!GO:0001944;vasculature development;0.0303908826360143!GO:0006509;membrane protein ectodomain proteolysis;0.0307809113815569!GO:0033619;membrane protein proteolysis;0.0307809113815569!GO:0005159;insulin-like growth factor receptor binding;0.0309588156813405!GO:0000159;protein phosphatase type 2A complex;0.0310168742382304!GO:0001666;response to hypoxia;0.0310168742382304!GO:0004674;protein serine/threonine kinase activity;0.0324435642807078!GO:0012506;vesicle membrane;0.0324611730233952!GO:0043034;costamere;0.0326668964300565!GO:0046489;phosphoinositide biosynthetic process;0.0326759983214727!GO:0046467;membrane lipid biosynthetic process;0.0328452054936343!GO:0015631;tubulin binding;0.0330932467796123!GO:0006979;response to oxidative stress;0.0332107764603161!GO:0001568;blood vessel development;0.0332265464569843!GO:0030131;clathrin adaptor complex;0.0332273090096287!GO:0035035;histone acetyltransferase binding;0.0336771304547066!GO:0006376;mRNA splice site selection;0.0336771304547066!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0336771304547066!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0338834126304457!GO:0008234;cysteine-type peptidase activity;0.0338834126304457!GO:0016779;nucleotidyltransferase activity;0.0341383968120523!GO:0016787;hydrolase activity;0.0357843703876117!GO:0030032;lamellipodium biogenesis;0.0357843703876117!GO:0005762;mitochondrial large ribosomal subunit;0.0358774167472084!GO:0000315;organellar large ribosomal subunit;0.0358774167472084!GO:0046914;transition metal ion binding;0.0360136105948724!GO:0009108;coenzyme biosynthetic process;0.0383915874581221!GO:0003746;translation elongation factor activity;0.0384513204455966!GO:0030100;regulation of endocytosis;0.0386631660666998!GO:0016301;kinase activity;0.0387444329954338!GO:0006752;group transfer coenzyme metabolic process;0.0396343730170914!GO:0008097;5S rRNA binding;0.0401386766721532!GO:0043407;negative regulation of MAP kinase activity;0.0403574595012996!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0403755045871816!GO:0016791;phosphoric monoester hydrolase activity;0.0415856800489682!GO:0001516;prostaglandin biosynthetic process;0.0420093945843703!GO:0046457;prostanoid biosynthetic process;0.0420093945843703!GO:0003682;chromatin binding;0.0432558625629626!GO:0031529;ruffle organization and biogenesis;0.0433695993298898!GO:0005774;vacuolar membrane;0.0436407872295377!GO:0005586;collagen type III;0.0459176816737668!GO:0046983;protein dimerization activity;0.0461316458948885!GO:0006611;protein export from nucleus;0.0472221207944322!GO:0016311;dephosphorylation;0.0476815162308913!GO:0016584;nucleosome positioning;0.0477729492274995!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0477759270286098!GO:0046813;virion attachment, binding of host cell surface receptor;0.0477759270286098!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0477759270286098!GO:0030659;cytoplasmic vesicle membrane;0.0480553479660078!GO:0030235;nitric-oxide synthase regulator activity;0.0484063783683442!GO:0007004;telomere maintenance via telomerase;0.0484615596123842 | |||
|sample_id=10100 | |sample_id=10100 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=uterus | |sample_tissue=uterus | ||
|top_motifs=SRF:2.955438527;MZF1:2.39157342533;RBPJ:2.38931636381;HBP1_HMGB_SSRP1_UBTF:2.30927907767;TFAP2{A,C}:2.27743775746;SMAD1..7,9:2.1507778576;FOX{D1,D2}:2.13193642362;MAZ:2.1241596711;MYBL2:2.11118375703;NFATC1..3:1.95760268763;SPZ1:1.94373732757;RREB1:1.89374746139;GTF2I:1.88852371367;SP1:1.73645791888;PRDM1:1.69761283982;FOX{I1,J2}:1.67821342208;MED-1{core}:1.63678663089;GCM1,2:1.62796669329;NANOG:1.60872041399;TBP:1.51880755906;IKZF1:1.51634860758;PAX5:1.50420457663;XCPE1{core}:1.49633298759;PATZ1:1.47195144338;TLX1..3_NFIC{dimer}:1.43619752299;ZNF238:1.4306896145;MTE{core}:1.37252266713;EGR1..3:1.36058266174;MYFfamily:1.34637535634;TFAP2B:1.32714005201;MEF2{A,B,C,D}:1.28555825691;TFAP4:1.28126687623;EP300:1.22036309587;HIC1:1.19975230592;FOXO1,3,4:1.19026085769;BPTF:1.18953720095;STAT1,3:1.16928855339;XBP1:1.14556106995;TLX2:1.14421754673;ESR1:1.11989144003;TEAD1:1.06691128113;TFCP2:1.05402281665;NKX2-3_NKX2-5:1.01641658231;AR:0.973289119256;SOX2:0.93891768984;GATA4:0.934803599546;GFI1B:0.932923239541;BREu{core}:0.927292000752;CDC5L:0.87388257232;FOXP1:0.856684633898;TGIF1:0.84913791194;NHLH1,2:0.843650092847;ZNF384:0.824561877148;SOX5:0.804367531003;TBX4,5:0.793889552772;GTF2A1,2:0.776363394642;RFX2..5_RFXANK_RFXAP:0.774501478132;ZIC1..3:0.756672042759;HMX1:0.728639692251;ATF2:0.719443356527;MTF1:0.66527232597;NKX2-1,4:0.662168660679;ZFP161:0.661510893444;FOXN1:0.661291328496;IKZF2:0.641436106462;NR1H4:0.633127827001;KLF4:0.627975048481;IRF7:0.611434827679;POU1F1:0.60780434208;GZF1:0.55077986902;RXRA_VDR{dimer}:0.544754725354;ZNF148:0.538513428498;POU6F1:0.535168965332;ADNP_IRX_SIX_ZHX:0.53369782698;HOX{A6,A7,B6,B7}:0.533368397756;HSF1,2:0.519390448913;SREBF1,2:0.511903262364;FOX{F1,F2,J1}:0.497838362761;AHR_ARNT_ARNT2:0.494346919851;RFX1:0.435812495985;NFIX:0.431944131334;ETS1,2:0.426293995122;ZNF423:0.419346974599;FOXM1:0.403818714093;TEF:0.402767643413;NKX3-2:0.397596305667;GFI1:0.37161688438;PBX1:0.369133112734;GATA6:0.316231171512;EBF1:0.310648713735;HNF1A:0.307472964443;ATF6:0.295317346745;PAX6:0.287112363264;NR3C1:0.277119624586;HAND1,2:0.275937344433;CREB1:0.24251175932;SPIB:0.241761352083;ZNF143:0.241498460374;SOX{8,9,10}:0.223040696584;LEF1_TCF7_TCF7L1,2:0.220333359757;IRF1,2:0.210535995996;GLI1..3:0.20582051073;NRF1:0.191244154163;TAL1_TCF{3,4,12}:0.187762140236;JUN:0.177992245917;REST:0.169934945844;PRRX1,2:0.164870749079;PDX1:0.152407200397;ARID5B:0.148566048763;ALX1:0.14325891207;FOXL1:0.134490624064;PITX1..3:0.132366173013;PAX1,9:0.128240805812;MAFB:0.0753236691376;ZBTB6:0.0625821241172;LHX3,4:0.0620360541832;ESRRA:0.0607891780353;RXR{A,B,G}:0.0606249371792;SNAI1..3:0.0502994715908;SPI1:0.0477566965627;STAT2,4,6:0.023185400492;SOX17:0.00989813128566;ELF1,2,4:0.00112522459613;FOXP3:-0.00499365022211;POU5F1:-0.00715930448762;POU3F1..4:-0.0109864258488;DBP:-0.0290185340253;T:-0.0414983602046;CUX2:-0.0532173125763;RORA:-0.0603000524521;ATF4:-0.0605447321534;NR6A1:-0.0716446325714;FOXA2:-0.122087881004;HNF4A_NR2F1,2:-0.174125499978;LMO2:-0.194007877488;TP53:-0.198948025997;NR5A1,2:-0.208320079661;PAX3,7:-0.214242960417;MYOD1:-0.222459157234;ZEB1:-0.288095288529;HOX{A4,D4}:-0.302591504994;HOX{A5,B5}:-0.321766745021;NFKB1_REL_RELA:-0.36276309715;VSX1,2:-0.365226544182;FOXD3:-0.370629106073;HES1:-0.390771436528;RUNX1..3:-0.398974021486;FOSL2:-0.446617227472;TOPORS:-0.452627308312;FOS_FOS{B,L1}_JUN{B,D}:-0.463928671971;HLF:-0.469191518566;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.483294192831;CEBPA,B_DDIT3:-0.484790533517;FOXQ1:-0.485080549807;NFIL3:-0.49099027155;EN1,2:-0.508695112238;BACH2:-0.545255032486;NFE2:-0.553357525245;ALX4:-0.560139858232;ELK1,4_GABP{A,B1}:-0.561851176644;NFY{A,B,C}:-0.563148864906;NANOG{mouse}:-0.563750691926;CDX1,2,4:-0.573034103907;E2F1..5:-0.577778120346;UFEwm:-0.592777711603;CRX:-0.630029444527;NKX6-1,2:-0.656866269144;POU2F1..3:-0.669208664061;bHLH_family:-0.681954364202;ZBTB16:-0.731818864718;PAX2:-0.764754225748;ATF5_CREB3:-0.782028300646;NKX3-1:-0.784396125106;TFDP1:-0.788126298686;HIF1A:-0.815627296577;YY1:-0.834724691944;NFE2L2:-0.853010289797;NFE2L1:-0.873479194722;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.906988331081;HMGA1,2:-0.930544068188;DMAP1_NCOR{1,2}_SMARC:-0.979372551882;OCT4_SOX2{dimer}:-1.01303577457;ONECUT1,2:-1.05015621684;HOXA9_MEIS1:-1.1786910669;PAX8:-1.21714402988;AIRE:-1.22827880552;MYB:-1.32067407139;PPARG:-1.35760149635;PAX4:-1.41348004361;NKX2-2,8:-1.44665346848;EVI1:-1.50792949132;STAT5{A,B}:-2.30667199266 | |top_motifs=SRF:2.955438527;MZF1:2.39157342533;RBPJ:2.38931636381;HBP1_HMGB_SSRP1_UBTF:2.30927907767;TFAP2{A,C}:2.27743775746;SMAD1..7,9:2.1507778576;FOX{D1,D2}:2.13193642362;MAZ:2.1241596711;MYBL2:2.11118375703;NFATC1..3:1.95760268763;SPZ1:1.94373732757;RREB1:1.89374746139;GTF2I:1.88852371367;SP1:1.73645791888;PRDM1:1.69761283982;FOX{I1,J2}:1.67821342208;MED-1{core}:1.63678663089;GCM1,2:1.62796669329;NANOG:1.60872041399;TBP:1.51880755906;IKZF1:1.51634860758;PAX5:1.50420457663;XCPE1{core}:1.49633298759;PATZ1:1.47195144338;TLX1..3_NFIC{dimer}:1.43619752299;ZNF238:1.4306896145;MTE{core}:1.37252266713;EGR1..3:1.36058266174;MYFfamily:1.34637535634;TFAP2B:1.32714005201;MEF2{A,B,C,D}:1.28555825691;TFAP4:1.28126687623;EP300:1.22036309587;HIC1:1.19975230592;FOXO1,3,4:1.19026085769;BPTF:1.18953720095;STAT1,3:1.16928855339;XBP1:1.14556106995;TLX2:1.14421754673;ESR1:1.11989144003;TEAD1:1.06691128113;TFCP2:1.05402281665;NKX2-3_NKX2-5:1.01641658231;AR:0.973289119256;SOX2:0.93891768984;GATA4:0.934803599546;GFI1B:0.932923239541;BREu{core}:0.927292000752;CDC5L:0.87388257232;FOXP1:0.856684633898;TGIF1:0.84913791194;NHLH1,2:0.843650092847;ZNF384:0.824561877148;SOX5:0.804367531003;TBX4,5:0.793889552772;GTF2A1,2:0.776363394642;RFX2..5_RFXANK_RFXAP:0.774501478132;ZIC1..3:0.756672042759;HMX1:0.728639692251;ATF2:0.719443356527;MTF1:0.66527232597;NKX2-1,4:0.662168660679;ZFP161:0.661510893444;FOXN1:0.661291328496;IKZF2:0.641436106462;NR1H4:0.633127827001;KLF4:0.627975048481;IRF7:0.611434827679;POU1F1:0.60780434208;GZF1:0.55077986902;RXRA_VDR{dimer}:0.544754725354;ZNF148:0.538513428498;POU6F1:0.535168965332;ADNP_IRX_SIX_ZHX:0.53369782698;HOX{A6,A7,B6,B7}:0.533368397756;HSF1,2:0.519390448913;SREBF1,2:0.511903262364;FOX{F1,F2,J1}:0.497838362761;AHR_ARNT_ARNT2:0.494346919851;RFX1:0.435812495985;NFIX:0.431944131334;ETS1,2:0.426293995122;ZNF423:0.419346974599;FOXM1:0.403818714093;TEF:0.402767643413;NKX3-2:0.397596305667;GFI1:0.37161688438;PBX1:0.369133112734;GATA6:0.316231171512;EBF1:0.310648713735;HNF1A:0.307472964443;ATF6:0.295317346745;PAX6:0.287112363264;NR3C1:0.277119624586;HAND1,2:0.275937344433;CREB1:0.24251175932;SPIB:0.241761352083;ZNF143:0.241498460374;SOX{8,9,10}:0.223040696584;LEF1_TCF7_TCF7L1,2:0.220333359757;IRF1,2:0.210535995996;GLI1..3:0.20582051073;NRF1:0.191244154163;TAL1_TCF{3,4,12}:0.187762140236;JUN:0.177992245917;REST:0.169934945844;PRRX1,2:0.164870749079;PDX1:0.152407200397;ARID5B:0.148566048763;ALX1:0.14325891207;FOXL1:0.134490624064;PITX1..3:0.132366173013;PAX1,9:0.128240805812;MAFB:0.0753236691376;ZBTB6:0.0625821241172;LHX3,4:0.0620360541832;ESRRA:0.0607891780353;RXR{A,B,G}:0.0606249371792;SNAI1..3:0.0502994715908;SPI1:0.0477566965627;STAT2,4,6:0.023185400492;SOX17:0.00989813128566;ELF1,2,4:0.00112522459613;FOXP3:-0.00499365022211;POU5F1:-0.00715930448762;POU3F1..4:-0.0109864258488;DBP:-0.0290185340253;T:-0.0414983602046;CUX2:-0.0532173125763;RORA:-0.0603000524521;ATF4:-0.0605447321534;NR6A1:-0.0716446325714;FOXA2:-0.122087881004;HNF4A_NR2F1,2:-0.174125499978;LMO2:-0.194007877488;TP53:-0.198948025997;NR5A1,2:-0.208320079661;PAX3,7:-0.214242960417;MYOD1:-0.222459157234;ZEB1:-0.288095288529;HOX{A4,D4}:-0.302591504994;HOX{A5,B5}:-0.321766745021;NFKB1_REL_RELA:-0.36276309715;VSX1,2:-0.365226544182;FOXD3:-0.370629106073;HES1:-0.390771436528;RUNX1..3:-0.398974021486;FOSL2:-0.446617227472;TOPORS:-0.452627308312;FOS_FOS{B,L1}_JUN{B,D}:-0.463928671971;HLF:-0.469191518566;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.483294192831;CEBPA,B_DDIT3:-0.484790533517;FOXQ1:-0.485080549807;NFIL3:-0.49099027155;EN1,2:-0.508695112238;BACH2:-0.545255032486;NFE2:-0.553357525245;ALX4:-0.560139858232;ELK1,4_GABP{A,B1}:-0.561851176644;NFY{A,B,C}:-0.563148864906;NANOG{mouse}:-0.563750691926;CDX1,2,4:-0.573034103907;E2F1..5:-0.577778120346;UFEwm:-0.592777711603;CRX:-0.630029444527;NKX6-1,2:-0.656866269144;POU2F1..3:-0.669208664061;bHLH_family:-0.681954364202;ZBTB16:-0.731818864718;PAX2:-0.764754225748;ATF5_CREB3:-0.782028300646;NKX3-1:-0.784396125106;TFDP1:-0.788126298686;HIF1A:-0.815627296577;YY1:-0.834724691944;NFE2L2:-0.853010289797;NFE2L1:-0.873479194722;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.906988331081;HMGA1,2:-0.930544068188;DMAP1_NCOR{1,2}_SMARC:-0.979372551882;OCT4_SOX2{dimer}:-1.01303577457;ONECUT1,2:-1.05015621684;HOXA9_MEIS1:-1.1786910669;PAX8:-1.21714402988;AIRE:-1.22827880552;MYB:-1.32067407139;PPARG:-1.35760149635;PAX4:-1.41348004361;NKX2-2,8:-1.44665346848;EVI1:-1.50792949132;STAT5{A,B}:-2.30667199266 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10100-102D1;search_select_hide=table117:FF:10100-102D1 | |||
}} | }} | ||
Latest revision as of 12:21, 3 June 2020
| Name: | uterus, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11676 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11676
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11676
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0091 |
| 10 | 10 | 0.0369 |
| 100 | 100 | 0.101 |
| 101 | 101 | 0.743 |
| 102 | 102 | 0.252 |
| 103 | 103 | 0.0287 |
| 104 | 104 | 0.483 |
| 105 | 105 | 0.448 |
| 106 | 106 | 0.1 |
| 107 | 107 | 0.72 |
| 108 | 108 | 0.327 |
| 109 | 109 | 0.0149 |
| 11 | 11 | 0.0316 |
| 110 | 110 | 0.147 |
| 111 | 111 | 6.51673e-4 |
| 112 | 112 | 0.472 |
| 113 | 113 | 0.286 |
| 114 | 114 | 0.00648 |
| 115 | 115 | 0.472 |
| 116 | 116 | 0.399 |
| 117 | 117 | 0.0149 |
| 118 | 118 | 0.0764 |
| 119 | 119 | 0.167 |
| 12 | 12 | 0.873 |
| 120 | 120 | 0.0618 |
| 121 | 121 | 0.718 |
| 122 | 122 | 0.93 |
| 123 | 123 | 0.106 |
| 124 | 124 | 0.849 |
| 125 | 125 | 0.0894 |
| 126 | 126 | 0.683 |
| 127 | 127 | 0.0832 |
| 128 | 128 | 0.335 |
| 129 | 129 | 0.516 |
| 13 | 13 | 0.0784 |
| 130 | 130 | 0.501 |
| 131 | 131 | 0.262 |
| 132 | 132 | 0.221 |
| 133 | 133 | 0.0275 |
| 134 | 134 | 0.256 |
| 135 | 135 | 0.32 |
| 136 | 136 | 0.376 |
| 137 | 137 | 0.208 |
| 138 | 138 | 0.452 |
| 139 | 139 | 0.211 |
| 14 | 14 | 0.982 |
| 140 | 140 | 0.192 |
| 141 | 141 | 0.596 |
| 142 | 142 | 0.453 |
| 143 | 143 | 0.0155 |
| 144 | 144 | 0.918 |
| 145 | 145 | 0.397 |
| 146 | 146 | 0.884 |
| 147 | 147 | 0.919 |
| 148 | 148 | 0.00669 |
| 149 | 149 | 0.635 |
| 15 | 15 | 0.0434 |
| 150 | 150 | 0.203 |
| 151 | 151 | 0.38 |
| 152 | 152 | 0.324 |
| 153 | 153 | 0.402 |
| 154 | 154 | 0.741 |
| 155 | 155 | 0.159 |
| 156 | 156 | 0.69 |
| 157 | 157 | 0.584 |
| 158 | 158 | 0.785 |
| 159 | 159 | 0.295 |
| 16 | 16 | 0.0584 |
| 160 | 160 | 0.361 |
| 161 | 161 | 0.398 |
| 162 | 162 | 0.348 |
| 163 | 163 | 0.368 |
| 164 | 164 | 0.0894 |
| 165 | 165 | 0.704 |
| 166 | 166 | 0.15 |
| 167 | 167 | 0.0113 |
| 168 | 168 | 0.605 |
| 169 | 169 | 0.0449 |
| 17 | 17 | 0.245 |
| 18 | 18 | 0.0258 |
| 19 | 19 | 0.941 |
| 2 | 2 | 0.408 |
| 20 | 20 | 0.245 |
| 21 | 21 | 0.206 |
| 22 | 22 | 0.65 |
| 23 | 23 | 0.976 |
| 24 | 24 | 0.431 |
| 25 | 25 | 0.316 |
| 26 | 26 | 0.00177 |
| 27 | 27 | 0.708 |
| 28 | 28 | 0.703 |
| 29 | 29 | 0.0161 |
| 3 | 3 | 0.149 |
| 30 | 30 | 0.116 |
| 31 | 31 | 0.649 |
| 32 | 32 | 0.38 |
| 33 | 33 | 0.138 |
| 34 | 34 | 0.466 |
| 35 | 35 | 0.206 |
| 36 | 36 | 0.00788 |
| 37 | 37 | 0.083 |
| 38 | 38 | 0.527 |
| 39 | 39 | 0.546 |
| 4 | 4 | 0.521 |
| 40 | 40 | 0.0318 |
| 41 | 41 | 0.107 |
| 42 | 42 | 0.361 |
| 43 | 43 | 0.135 |
| 44 | 44 | 0.125 |
| 45 | 45 | 0.543 |
| 46 | 46 | 0.0527 |
| 47 | 47 | 0.0381 |
| 48 | 48 | 0.133 |
| 49 | 49 | 0.0702 |
| 5 | 5 | 0.494 |
| 50 | 50 | 0.887 |
| 51 | 51 | 0.522 |
| 52 | 52 | 0.768 |
| 53 | 53 | 0.945 |
| 54 | 54 | 0.751 |
| 55 | 55 | 0.672 |
| 56 | 56 | 0.602 |
| 57 | 57 | 0.154 |
| 58 | 58 | 0.523 |
| 59 | 59 | 0.453 |
| 6 | 6 | 0.742 |
| 60 | 60 | 0.553 |
| 61 | 61 | 0.371 |
| 62 | 62 | 0.269 |
| 63 | 63 | 0.209 |
| 64 | 64 | 0.166 |
| 65 | 65 | 0.457 |
| 66 | 66 | 0.13 |
| 67 | 67 | 0.326 |
| 68 | 68 | 0.963 |
| 69 | 69 | 0.125 |
| 7 | 7 | 0.222 |
| 70 | 70 | 0.0152 |
| 71 | 71 | 0.0236 |
| 72 | 72 | 0.371 |
| 73 | 73 | 0.0564 |
| 74 | 74 | 0.531 |
| 75 | 75 | 0.00817 |
| 76 | 76 | 0.0991 |
| 77 | 77 | 0.976 |
| 78 | 78 | 0.075 |
| 79 | 79 | 0.346 |
| 8 | 8 | 0.0567 |
| 80 | 80 | 0.321 |
| 81 | 81 | 0.175 |
| 82 | 82 | 0.604 |
| 83 | 83 | 0.918 |
| 84 | 84 | 0.631 |
| 85 | 85 | 0.287 |
| 86 | 86 | 0.442 |
| 87 | 87 | 0.00504 |
| 88 | 88 | 0.961 |
| 89 | 89 | 0.394 |
| 9 | 9 | 0.789 |
| 90 | 90 | 0.0538 |
| 91 | 91 | 0.872 |
| 92 | 92 | 0.723 |
| 93 | 93 | 0.238 |
| 94 | 94 | 0.0106 |
| 95 | 95 | 0.00404 |
| 96 | 96 | 0.281 |
| 97 | 97 | 0.665 |
| 98 | 98 | 0.181 |
| 99 | 99 | 0.814 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11676
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010100 human uterus - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000995 (uterus)
0006834 (uterus or analog)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010100 (human uterus - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)
