FF:10166-103B4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00004727 | ||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004727 | |||
|HumanCAGEScanFiles=NCig10037;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/cerebellum%252c%2520adult%252c%2520donor10252.NCig10037.10166-103B4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/cerebellum%252c%2520adult%252c%2520donor10252.NCig10037.10166-103B4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/cerebellum%252c%2520adult%252c%2520donor10252.NCig10037.10166-103B4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/cerebellum%252c%2520adult%252c%2520donor10252.NCig10037.10166-103B4.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008632;DRR009504;DRZ000929;DRZ002314;DRZ012279;DRZ013664 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057156;DRR062915;DRZ007991 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002037,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002028 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010083 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:147127142..147127168,+!p1@ZIC1!2.52!333.40!ZIC1;;chr2:182545234..182545252,-!p1@NEUROD1!2.41!257.65!NEUROD1;;chr17:37764128..37764258,-!p1@NEUROD2!2.35!222.60!NEUROD2;;chr1:244214577..244214593,+!p1@ZNF238!2.27!185.88!ZNF238;;chr3:147127177..147127194,+!p2@ZIC1!2.18!148.95!ZIC1;;chr9:114287433..114287513,+!p1@ZNF483!2.11!315.48!ZNF483;;chr3:22414241..22414278,-!p5@ZNF385D!2.10!125.62!ZNF385D;;chr11:31832658..31832681,-!p1@PAX6!2.10!123.52!PAX6;;chr11:31832862..31832884,-!p2@PAX6!2.08!119.65!PAX6;;chr7:100065686..100065701,-!p2@TSC22D4!2.06!113.45!TSC22D4;;chr19:13135582..13135600,+!p3@NFIX!2.02!102.73!NFIX;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.01!100.18!PEG3;;chr3:114819124..114819200,-!p3@ZBTB20!2.00!224.48!ZBTB20;;chr3:22414187..22414230,-!p6@ZNF385D!1.93!83.60!ZNF385D;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.91!79.84!EN2;;chr8:106330656..106330684,+!p1@ZFPM2!1.89!193.62!ZFPM2;;chr20:62795799..62795819,+!p1@MYT1!1.89!76.63!MYT1;;chr8:106330696..106330719,+!p2@ZFPM2!1.88!95.21!ZFPM2;;chr14:73360799..73360817,-!p1@DPF3!1.85!229.45!DPF3;;chr3:181429704..181429722,+!p1@SOX2!1.82!64.36!SOX2;;chr19:13135386..13135435,+!p4@NFIX!1.81!64.25!NFIX;;chr8:53166899..53166914,-!p3@ST18!1.81!63.58!ST18;;chrX:136648279..136648295,+!p1@ZIC3!1.80!62.48!ZIC3;;chr21:34442439..34442455,+!p1@OLIG1!1.80!61.81!OLIG1;;chr17:35294075..35294102,+!p1@ENST00000559335!1.80!61.59!LHX1;;chr7:14025855..14025890,-!p6@ETV1!1.78!58.83!ETV1;;chr13:100634031..100634045,+!p1@ZIC2!1.78!58.83!ZIC2;;chr1:61548069..61548102,+!p3@NFIA!1.72!120.42!NFIA;;chr2:2334997..2335053,-!p1@MYT1L!1.71!50.09!MYT1L;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.69!48.21!SMARCE1;;chr15:31658288..31658338,+!p4@KLF13!1.68!46.44!KLF13;;chr7:73038839..73038862,-!p1@MLXIPL!1.66!45.12!MLXIPL;;chr1:214161272..214161322,+!p1@PROX1!1.65!61.26!PROX1;;chr12:26277817..26277863,-!p2@BHLHE41!1.65!58.39!BHLHE41;;chr17:53342311..53342400,+!p1@HLF!1.65!49.98!HLF;;chr18:22932080..22932170,-!p1@ZNF521!1.64!172.17!ZNF521;;chr11:31832807..31832823,-!p4@PAX6!1.63!42.02!PAX6;;chr11:31832610..31832639,-!p5@PAX6!1.63!41.80!PAX6;;chr7:14028488..14028516,-!p2@ETV1!1.62!44.34!ETV1;;chr3:147124307..147124336,-!p2@ZIC4!1.62!41.14!ZIC4;;chr8:93107451..93107468,-!p2@RUNX1T1!1.61!40.03!RUNX1T1;;chr3:114173720..114173794,-!p6@ZBTB20!1.61!39.70!ZBTB20;;chr3:147114260..147114290,-!p3@ZIC4!1.61!39.48!ZIC4;;chr7:14025816..14025842,-!p9@ETV1!1.59!38.15!ETV1;;chr15:61521417..61521460,-!p2@RORA!1.58!81.05!RORA;;chr11:113930425..113930471,+!p1@ZBTB16!1.58!52.75!ZBTB16;;chr1:244219775..244219893,+!p2@ZNF238!1.58!50.42!ZNF238;;chr14:58798013..58798071,+!p2@ARID4A!1.58!37.38!ARID4A;;chr20:62795758..62795784,+!p4@MYT1!1.58!36.82!MYT1;;chr19:38085768..38085821,+!p1@ZNF540!1.57!52.75!ZNF540;;chr11:113930291..113930339,+!p2@ZBTB16!1.56!57.28!ZBTB16;;chr8:93074803..93074845,-!p1@RUNX1T1!1.56!35.27!RUNX1T1;;chr6:15401104..15401166,+!p5@JARID2!1.56!35.16!JARID2;;chr3:141105705..141105770,+!p4@ZBTB38!1.55!42.02!ZBTB38;;chr14:57277178..57277203,-!p1@OTX2!1.54!34.06!OTX2;;chr3:147127329..147127341,+!p7@ZIC1!1.54!33.73!ZIC1;;chr17:7492684..7492778,-!p2@SOX15!1.53!67.56!SOX15;;chr22:38380543..38380569,-!p1@SOX10!1.53!32.73!SOX10;;chr12:26277956..26277980,-!p1@BHLHE41!1.52!111.69!BHLHE41;;chr2:166326200..166326216,+!p1@CSRNP3!1.52!46.66!CSRNP3;;chr7:1272500..1272513,+!p1@UNCX!1.52!32.18!UNCX;;chr19:46801639..46801699,+!p1@HIF3A!1.51!31.63!HIF3A;;chr18:52989031..52989079,-!p2@TCF4!1.50!69.78!TCF4;;chr7:14028743..14028799,-!p3@ETV1!1.50!38.26!ETV1;;chr13:100634004..100634025,+!p2@ZIC2!1.50!30.52!ZIC2;;chr5:170736243..170736279,+!p1@TLX3!1.49!30.08!TLX3;;chr15:57511609..57511651,+!p2@TCF12!1.47!46.78!TCF12;;chr2:182545282..182545294,-!p2@NEUROD1!1.46!28.09!NEUROD1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.46!27.98!POU3F3;;chr8:93074848..93074871,-!p3@RUNX1T1!1.46!27.87!RUNX1T1;;chr1:2235077..2235103,+!p9@SKI!1.46!27.87!SKI;;chr20:62795834..62795878,+!p2@MYT1!1.45!27.09!MYT1;;chr12:106976678..106976708,+!p2@RFX4!1.45!26.98!RFX4;;chr7:64342913..64342935,+!p2@ZNF273!1.45!26.87!ZNF273;;chr19:46800289..46800327,+!p2@HIF3A!1.45!26.87!HIF3A;;chr14:21994449..21994524,-!p2@SALL2!1.43!75.42!SALL2;;chr13:100623993..100624011,-!p4@ZIC5!1.43!25.76!ZIC5;;chr2:180726040..180726052,-!p2@ZNF385B!1.43!25.76!ZNF385B;;chr7:14029283..14029311,-!p1@ETV1!1.42!129.71!ETV1;;chr7:14026022..14026044,-!p7@ETV1!1.42!25.43!ETV1;;chr19:57352109..57352153,-!p2@ZIM2!1.42!25.21!ZIM2;;chr7:14029312..14029325,-!p4@ETV1!1.41!30.52!ETV1;;chr7:14028693..14028704,-!p12@ETV1!1.41!24.44!ETV1;;chr19:13135566..13135577,+!p9@NFIX!1.41!24.44!NFIX;;chr21:47063625..47063658,+!p1@PCBP3!1.40!101.62!PCBP3;;chr3:141105235..141105307,+!p7@ZBTB38!1.40!24.33!ZBTB38;;chr13:100634130..100634143,+!p3@ZIC2!1.40!24.11!ZIC2;;chr16:67197654..67197716,+!p3@HSF4!1.40!24.00!HSF4;;chr7:14026063..14026091,-!p10@ETV1!1.39!23.66!ETV1;;chr3:147139053..147139112,+!p5@ZIC1!1.39!23.44!ZIC1;;chr2:182545296..182545307,-!p3@NEUROD1!1.39!23.33!NEUROD1;;chr3:147110055..147110129,-!p1@ZIC4!1.39!23.33!ZIC4;;chr5:178368186..178368238,+!p1@ZNF454!1.38!41.02!ZNF454;;chr2:223163706..223163730,-!p1@PAX3!1.38!23.11!PAX3;;chr13:100623375..100623425,-!p1@ZIC5!1.37!22.34!ZIC5;;chr1:61547894..61547968,+!p2@NFIA!1.36!62.48!NFIA;;chr2:185463247..185463263,+!p1@ZNF804A!1.36!38.48!ZNF804A;;chr22:41763452..41763466,+!p2@TEF!1.36!22.12!TEF;;chr14:58797974..58798011,+!p3@ARID4A!1.36!21.89!ARID4A;;chr11:125034640..125034655,+!p1@PKNOX2!1.36!21.67!PKNOX2;;chr19:58629742..58629787,-!p2@ZSCAN18!1.35!21.34!ZSCAN18;;chr2:2328299..2328363,-!p3@MYT1L!1.35!21.23!MYT1L;;chr2:100721328..100721348,-!p4@AFF3!1.34!21.01!AFF3;;chr11:31832581..31832601,-!p7@PAX6!1.34!20.90!PAX6;;chr1:42384532..42384603,-!p2@HIVEP3!1.34!20.68!HIVEP3;;chr1:61548374..61548415,+!p4@NFIA!1.33!37.15!NFIA;;chr2:100721281..100721307,-!p5@AFF3!1.33!20.24!AFF3;;chr15:61521462..61521482,-!p4@RORA!1.32!20.01!RORA;;chr14:24020938..24020988,-!p1@ZFHX2!1.31!27.98!ZFHX2;;chr8:93107696..93107716,-!p8@RUNX1T1!1.31!19.57!RUNX1T1;;chr8:106330823..106330836,+!p3@ZFPM2!1.31!19.24!ZFPM2;;chr17:38256822..38256851,-!p1@NR1D1!1.30!145.74!NR1D1;;chr9:3525910..3525955,-!p4@RFX3!1.30!55.62!RFX3;;chr13:100624012..100624026,-!p3@ZIC5!1.30!18.80!ZIC5;;chr9:3525968..3526016,-!p1@RFX3!1.29!104.72!RFX3;;chr5:158526917..158526932,-!p1@EBF1!1.29!45.67!EBF1;;chr3:141103634..141103665,+!p18@ZBTB38!1.29!18.69!ZBTB38;;chr1:8585945..8586056,-!p3@RERE!1.28!60.16!RERE;;chr2:145277882..145277967,-!p3@ZEB2!1.28!31.29!ZEB2;;chr3:126076242..126076257,-!p1@KLF15!1.28!22.34!KLF15;;chr3:114173859..114173873,-!p15@ZBTB20!1.28!17.91!ZBTB20;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.28!17.91!ZBED1;;chr12:54779511..54779577,-!p5@ZNF385A!1.27!17.69!ZNF385A;;chr5:170736216..170736238,+!p2@TLX3!1.27!17.58!TLX3;;chrX:136648297..136648319,+!p3@ZIC3!1.26!17.14!ZIC3;;chr18:22932004..22932021,-!p2@ZNF521!1.26!17.14!ZNF521;;chr21:34398234..34398250,+!p1@OLIG2!1.26!17.14!OLIG2;;chr15:31618903..31618962,+!p3@KLF13!1.25!45.67!KLF13;;chr3:114477934..114477961,-!p14@ZBTB20!1.25!16.81!ZBTB20;;chr9:3525867..3525902,-!p3@RFX3!1.24!56.51!RFX3;;chr18:47814186..47814232,-!p2@CXXC1!1.24!33.51!CXXC1;;chr2:74229812..74229867,+!p1@TET3!1.23!39.81!TET3;;chr6:143266185..143266238,-!p2@HIVEP2!1.23!21.89!HIVEP2;;chr3:147111505..147111529,+!p6@ZIC1!1.23!16.14!ZIC1;;chr11:31832687..31832704,-!p6@PAX6!1.23!16.14!PAX6;;chr14:21994525..21994547,-!p4@SALL2!1.23!15.92!SALL2;;chr20:20348740..20348757,+!p1@INSM1!1.23!15.92!INSM1;;chr1:244214611..244214624,+!p4@ZNF238!1.23!15.81!ZNF238;;chr2:180726058..180726098,-!p3@ZNF385B!1.23!15.81!ZNF385B;;chr3:187463248..187463264,-!p1@BCL6!1.22!326.21!BCL6;;chr2:178128250..178128293,-!p6@NFE2L2!1.22!38.70!NFE2L2;;chr3:181429741..181429767,+!p2@SOX2!1.22!15.70!SOX2;;chr7:63505799..63505904,+!p1@ZNF727!1.22!15.59!ZNF727;;chr13:100638100..100638115,+!p4@ZIC2!1.22!15.59!ZIC2;;chr3:147111231..147111281,+!p3@ZIC1!1.22!15.48!ZIC1;;chr14:21994337..21994442,-!p1@SALL2!1.21!41.36!SALL2;;chr19:53496768..53496799,-!p1@ZNF702P!1.21!23.44!ZNF702P;;chr11:125034605..125034636,+!p2@PKNOX2!1.21!15.37!PKNOX2;;chr2:2328725..2328739,-!p5@MYT1L!1.21!15.04!MYT1L;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.20!14.71!POU3F3;;chr16:4323246..4323299,-!p5@TFAP4!1.20!14.71!TFAP4;;chr1:151804244..151804310,-!p1@RORC!1.19!14.60!RORC;;chr3:147110145..147110180,-!p4@ZIC4!1.19!14.49!ZIC4;;chr14:33403648..33403710,+!p3@NPAS3!1.19!14.49!NPAS3;;chr6:28321827..28321856,-!p5@ZNF323!1.19!14.38!ZNF323;;chr17:70117153..70117174,+!p1@SOX9!1.18!142.43!SOX9;;chr9:2015275..2015287,+!p8@SMARCA2!1.18!22.67!SMARCA2;;chr19:13136130..13136165,+!p6@NFIX!1.18!18.91!NFIX;;chr2:113057415..113057477,+!p3@ZC3H6!1.18!18.25!ZC3H6;;chr12:125003087..125003141,-!p4@NCOR2!1.18!18.13!NCOR2;;chr6:28321909..28321965,-!p3@ZNF323!1.18!14.26!ZNF323;;chr14:33403881..33403924,+!p1@NPAS3!1.18!14.15!NPAS3;;chr1:8877692..8877732,-!p1@RERE!1.17!110.25!RERE;;chr6:19837592..19837621,+!p1@ID4!1.17!84.04!ID4;;chr9:73029219..73029289,-!p2@KLF9!1.17!41.25!KLF9;;chr9:77112244..77112262,+!p1@RORB!1.17!15.59!RORB;;chr19:57183114..57183145,-!p1@ZNF835!1.17!15.59!ZNF835;;chr12:106976774..106976788,+!p1@RFX4!1.17!13.82!RFX4;;chr8:93115274..93115323,-!p4@RUNX1T1!1.17!13.71!RUNX1T1;;chr9:109625401..109625458,+!p1@ZNF462!1.16!35.39!ZNF462;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.16!28.42!ZNF395;;chr2:214016314..214016343,-!p2@IKZF2!1.16!22.56!IKZF2;;chr7:64023410..64023428,-!p2@ZNF680!1.16!21.34!ZNF680;;chr18:52989081..52989117,-!p7@TCF4!1.16!20.57!TCF4;;chr10:48355030..48355090,+!p1@ZNF488!1.16!17.36!ZNF488;;chr1:61548118..61548129,+!p9@NFIA!1.16!15.15!NFIA;;chr11:125034586..125034604,+!p3@PKNOX2!1.16!13.49!PKNOX2;;chr8:145560111..145560165,-!p2@SCRT1!1.16!13.49!SCRT1;;chr8:53166916..53166925,-!p10@ST18!1.16!13.38!ST18;;chr7:64023441..64023462,-!p1@ZNF680!1.15!104.50!ZNF680;;chr8:30890810..30890880,-!p1@PURG!1.15!13.16!PURG;;chr8:53162037..53162058,-!p5@ST18!1.15!13.05!ST18;;chr2:17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| |expression_enrichment_score=chr3:147127142..147127168,+!p1@ZIC1!2.52!333.40!ZIC1;;chr2:182545234..182545252,-!p1@NEUROD1!2.41!257.65!NEUROD1;;chr17:37764128..37764258,-!p1@NEUROD2!2.35!222.60!NEUROD2;;chr1:244214577..244214593,+!p1@ZNF238!2.27!185.88!ZNF238;;chr3:147127177..147127194,+!p2@ZIC1!2.18!148.95!ZIC1;;chr9:114287433..114287513,+!p1@ZNF483!2.11!315.48!ZNF483;;chr3:22414241..22414278,-!p5@ZNF385D!2.10!125.62!ZNF385D;;chr11:31832658..31832681,-!p1@PAX6!2.10!123.52!PAX6;;chr11:31832862..31832884,-!p2@PAX6!2.08!119.65!PAX6;;chr7:100065686..100065701,-!p2@TSC22D4!2.06!113.45!TSC22D4;;chr19:13135582..13135600,+!p3@NFIX!2.02!102.73!NFIX;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.01!100.18!PEG3;;chr3:114819124..114819200,-!p3@ZBTB20!2.00!224.48!ZBTB20;;chr3:22414187..22414230,-!p6@ZNF385D!1.93!83.60!ZNF385D;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.91!79.84!EN2;;chr8:106330656..106330684,+!p1@ZFPM2!1.89!193.62!ZFPM2;;chr20:62795799..62795819,+!p1@MYT1!1.89!76.63!MYT1;;chr8:106330696..106330719,+!p2@ZFPM2!1.88!95.21!ZFPM2;;chr14:73360799..73360817,-!p1@DPF3!1.85!229.45!DPF3;;chr3:181429704..181429722,+!p1@SOX2!1.82!64.36!SOX2;;chr19:13135386..13135435,+!p4@NFIX!1.81!64.25!NFIX;;chr8:53166899..53166914,-!p3@ST18!1.81!63.58!ST18;;chrX:136648279..136648295,+!p1@ZIC3!1.80!62.48!ZIC3;;chr21:34442439..34442455,+!p1@OLIG1!1.80!61.81!OLIG1;;chr17:35294075..35294102,+!p1@ENST00000559335!1.80!61.59!LHX1;;chr7:14025855..14025890,-!p6@ETV1!1.78!58.83!ETV1;;chr13:100634031..100634045,+!p1@ZIC2!1.78!58.83!ZIC2;;chr1:61548069..61548102,+!p3@NFIA!1.72!120.42!NFIA;;chr2:2334997..2335053,-!p1@MYT1L!1.71!50.09!MYT1L;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.69!48.21!SMARCE1;;chr15:31658288..31658338,+!p4@KLF13!1.68!46.44!KLF13;;chr7:73038839..73038862,-!p1@MLXIPL!1.66!45.12!MLXIPL;;chr1:214161272..214161322,+!p1@PROX1!1.65!61.26!PROX1;;chr12:26277817..26277863,-!p2@BHLHE41!1.65!58.39!BHLHE41;;chr17:53342311..53342400,+!p1@HLF!1.65!49.98!HLF;;chr18:22932080..22932170,-!p1@ZNF521!1.64!172.17!ZNF521;;chr11:31832807..31832823,-!p4@PAX6!1.63!42.02!PAX6;;chr11:31832610..31832639,-!p5@PAX6!1.63!41.80!PAX6;;chr7:14028488..14028516,-!p2@ETV1!1.62!44.34!ETV1;;chr3:147124307..147124336,-!p2@ZIC4!1.62!41.14!ZIC4;;chr8:93107451..93107468,-!p2@RUNX1T1!1.61!40.03!RUNX1T1;;chr3:114173720..114173794,-!p6@ZBTB20!1.61!39.70!ZBTB20;;chr3:147114260..147114290,-!p3@ZIC4!1.61!39.48!ZIC4;;chr7:14025816..14025842,-!p9@ETV1!1.59!38.15!ETV1;;chr15:61521417..61521460,-!p2@RORA!1.58!81.05!RORA;;chr11:113930425..113930471,+!p1@ZBTB16!1.58!52.75!ZBTB16;;chr1:244219775..244219893,+!p2@ZNF238!1.58!50.42!ZNF238;;chr14:58798013..58798071,+!p2@ARID4A!1.58!37.38!ARID4A;;chr20:62795758..62795784,+!p4@MYT1!1.58!36.82!MYT1;;chr19:38085768..38085821,+!p1@ZNF540!1.57!52.75!ZNF540;;chr11:113930291..113930339,+!p2@ZBTB16!1.56!57.28!ZBTB16;;chr8:93074803..93074845,-!p1@RUNX1T1!1.56!35.27!RUNX1T1;;chr6:15401104..15401166,+!p5@JARID2!1.56!35.16!JARID2;;chr3:141105705..141105770,+!p4@ZBTB38!1.55!42.02!ZBTB38;;chr14:57277178..57277203,-!p1@OTX2!1.54!34.06!OTX2;;chr3:147127329..147127341,+!p7@ZIC1!1.54!33.73!ZIC1;;chr17:7492684..7492778,-!p2@SOX15!1.53!67.56!SOX15;;chr22:38380543..38380569,-!p1@SOX10!1.53!32.73!SOX10;;chr12:26277956..26277980,-!p1@BHLHE41!1.52!111.69!BHLHE41;;chr2:166326200..166326216,+!p1@CSRNP3!1.52!46.66!CSRNP3;;chr7:1272500..1272513,+!p1@UNCX!1.52!32.18!UNCX;;chr19:46801639..46801699,+!p1@HIF3A!1.51!31.63!HIF3A;;chr18:52989031..52989079,-!p2@TCF4!1.50!69.78!TCF4;;chr7:14028743..14028799,-!p3@ETV1!1.50!38.26!ETV1;;chr13:100634004..100634025,+!p2@ZIC2!1.50!30.52!ZIC2;;chr5:170736243..170736279,+!p1@TLX3!1.49!30.08!TLX3;;chr15:57511609..57511651,+!p2@TCF12!1.47!46.78!TCF12;;chr2:182545282..182545294,-!p2@NEUROD1!1.46!28.09!NEUROD1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.46!27.98!POU3F3;;chr8:93074848..93074871,-!p3@RUNX1T1!1.46!27.87!RUNX1T1;;chr1:2235077..2235103,+!p9@SKI!1.46!27.87!SKI;;chr20:62795834..62795878,+!p2@MYT1!1.45!27.09!MYT1;;chr12:106976678..106976708,+!p2@RFX4!1.45!26.98!RFX4;;chr7:64342913..64342935,+!p2@ZNF273!1.45!26.87!ZNF273;;chr19:46800289..46800327,+!p2@HIF3A!1.45!26.87!HIF3A;;chr14:21994449..21994524,-!p2@SALL2!1.43!75.42!SALL2;;chr13:100623993..100624011,-!p4@ZIC5!1.43!25.76!ZIC5;;chr2:180726040..180726052,-!p2@ZNF385B!1.43!25.76!ZNF385B;;chr7:14029283..14029311,-!p1@ETV1!1.42!129.71!ETV1;;chr7:14026022..14026044,-!p7@ETV1!1.42!25.43!ETV1;;chr19:57352109..57352153,-!p2@ZIM2!1.42!25.21!ZIM2;;chr7:14029312..14029325,-!p4@ETV1!1.41!30.52!ETV1;;chr7:14028693..14028704,-!p12@ETV1!1.41!24.44!ETV1;;chr19:13135566..13135577,+!p9@NFIX!1.41!24.44!NFIX;;chr21:47063625..47063658,+!p1@PCBP3!1.40!101.62!PCBP3;;chr3:141105235..141105307,+!p7@ZBTB38!1.40!24.33!ZBTB38;;chr13:100634130..100634143,+!p3@ZIC2!1.40!24.11!ZIC2;;chr16:67197654..67197716,+!p3@HSF4!1.40!24.00!HSF4;;chr7:14026063..14026091,-!p10@ETV1!1.39!23.66!ETV1;;chr3:147139053..147139112,+!p5@ZIC1!1.39!23.44!ZIC1;;chr2:182545296..182545307,-!p3@NEUROD1!1.39!23.33!NEUROD1;;chr3:147110055..147110129,-!p1@ZIC4!1.39!23.33!ZIC4;;chr5:178368186..178368238,+!p1@ZNF454!1.38!41.02!ZNF454;;chr2:223163706..223163730,-!p1@PAX3!1.38!23.11!PAX3;;chr13:100623375..100623425,-!p1@ZIC5!1.37!22.34!ZIC5;;chr1:61547894..61547968,+!p2@NFIA!1.36!62.48!NFIA;;chr2:185463247..185463263,+!p1@ZNF804A!1.36!38.48!ZNF804A;;chr22:41763452..41763466,+!p2@TEF!1.36!22.12!TEF;;chr14:58797974..58798011,+!p3@ARID4A!1.36!21.89!ARID4A;;chr11:125034640..125034655,+!p1@PKNOX2!1.36!21.67!PKNOX2;;chr19:58629742..58629787,-!p2@ZSCAN18!1.35!21.34!ZSCAN18;;chr2:2328299..2328363,-!p3@MYT1L!1.35!21.23!MYT1L;;chr2:100721328..100721348,-!p4@AFF3!1.34!21.01!AFF3;;chr11:31832581..31832601,-!p7@PAX6!1.34!20.90!PAX6;;chr1:42384532..42384603,-!p2@HIVEP3!1.34!20.68!HIVEP3;;chr1:61548374..61548415,+!p4@NFIA!1.33!37.15!NFIA;;chr2:100721281..100721307,-!p5@AFF3!1.33!20.24!AFF3;;chr15:61521462..61521482,-!p4@RORA!1.32!20.01!RORA;;chr14:24020938..24020988,-!p1@ZFHX2!1.31!27.98!ZFHX2;;chr8:93107696..93107716,-!p8@RUNX1T1!1.31!19.57!RUNX1T1;;chr8:106330823..106330836,+!p3@ZFPM2!1.31!19.24!ZFPM2;;chr17:38256822..38256851,-!p1@NR1D1!1.30!145.74!NR1D1;;chr9:3525910..3525955,-!p4@RFX3!1.30!55.62!RFX3;;chr13:100624012..100624026,-!p3@ZIC5!1.30!18.80!ZIC5;;chr9:3525968..3526016,-!p1@RFX3!1.29!104.72!RFX3;;chr5:158526917..158526932,-!p1@EBF1!1.29!45.67!EBF1;;chr3:141103634..141103665,+!p18@ZBTB38!1.29!18.69!ZBTB38;;chr1:8585945..8586056,-!p3@RERE!1.28!60.16!RERE;;chr2:145277882..145277967,-!p3@ZEB2!1.28!31.29!ZEB2;;chr3:126076242..126076257,-!p1@KLF15!1.28!22.34!KLF15;;chr3:114173859..114173873,-!p15@ZBTB20!1.28!17.91!ZBTB20;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.28!17.91!ZBED1;;chr12:54779511..54779577,-!p5@ZNF385A!1.27!17.69!ZNF385A;;chr5:170736216..170736238,+!p2@TLX3!1.27!17.58!TLX3;;chrX:136648297..136648319,+!p3@ZIC3!1.26!17.14!ZIC3;;chr18:22932004..22932021,-!p2@ZNF521!1.26!17.14!ZNF521;;chr21:34398234..34398250,+!p1@OLIG2!1.26!17.14!OLIG2;;chr15:31618903..31618962,+!p3@KLF13!1.25!45.67!KLF13;;chr3:114477934..114477961,-!p14@ZBTB20!1.25!16.81!ZBTB20;;chr9:3525867..3525902,-!p3@RFX3!1.24!56.51!RFX3;;chr18:47814186..47814232,-!p2@CXXC1!1.24!33.51!CXXC1;;chr2:74229812..74229867,+!p1@TET3!1.23!39.81!TET3;;chr6:143266185..143266238,-!p2@HIVEP2!1.23!21.89!HIVEP2;;chr3:147111505..147111529,+!p6@ZIC1!1.23!16.14!ZIC1;;chr11:31832687..31832704,-!p6@PAX6!1.23!16.14!PAX6;;chr14:21994525..21994547,-!p4@SALL2!1.23!15.92!SALL2;;chr20:20348740..20348757,+!p1@INSM1!1.23!15.92!INSM1;;chr1:244214611..244214624,+!p4@ZNF238!1.23!15.81!ZNF238;;chr2:180726058..180726098,-!p3@ZNF385B!1.23!15.81!ZNF385B;;chr3:187463248..187463264,-!p1@BCL6!1.22!326.21!BCL6;;chr2:178128250..178128293,-!p6@NFE2L2!1.22!38.70!NFE2L2;;chr3:181429741..181429767,+!p2@SOX2!1.22!15.70!SOX2;;chr7:63505799..63505904,+!p1@ZNF727!1.22!15.59!ZNF727;;chr13:100638100..100638115,+!p4@ZIC2!1.22!15.59!ZIC2;;chr3:147111231..147111281,+!p3@ZIC1!1.22!15.48!ZIC1;;chr14:21994337..21994442,-!p1@SALL2!1.21!41.36!SALL2;;chr19:53496768..53496799,-!p1@ZNF702P!1.21!23.44!ZNF702P;;chr11:125034605..125034636,+!p2@PKNOX2!1.21!15.37!PKNOX2;;chr2:2328725..2328739,-!p5@MYT1L!1.21!15.04!MYT1L;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.20!14.71!POU3F3;;chr16:4323246..4323299,-!p5@TFAP4!1.20!14.71!TFAP4;;chr1:151804244..151804310,-!p1@RORC!1.19!14.60!RORC;;chr3:147110145..147110180,-!p4@ZIC4!1.19!14.49!ZIC4;;chr14:33403648..33403710,+!p3@NPAS3!1.19!14.49!NPAS3;;chr6:28321827..28321856,-!p5@ZNF323!1.19!14.38!ZNF323;;chr17:70117153..70117174,+!p1@SOX9!1.18!142.43!SOX9;;chr9:2015275..2015287,+!p8@SMARCA2!1.18!22.67!SMARCA2;;chr19:13136130..13136165,+!p6@NFIX!1.18!18.91!NFIX;;chr2:113057415..113057477,+!p3@ZC3H6!1.18!18.25!ZC3H6;;chr12:125003087..125003141,-!p4@NCOR2!1.18!18.13!NCOR2;;chr6:28321909..28321965,-!p3@ZNF323!1.18!14.26!ZNF323;;chr14:33403881..33403924,+!p1@NPAS3!1.18!14.15!NPAS3;;chr1:8877692..8877732,-!p1@RERE!1.17!110.25!RERE;;chr6:19837592..19837621,+!p1@ID4!1.17!84.04!ID4;;chr9:73029219..73029289,-!p2@KLF9!1.17!41.25!KLF9;;chr9:77112244..77112262,+!p1@RORB!1.17!15.59!RORB;;chr19:57183114..57183145,-!p1@ZNF835!1.17!15.59!ZNF835;;chr12:106976774..106976788,+!p1@RFX4!1.17!13.82!RFX4;;chr8:93115274..93115323,-!p4@RUNX1T1!1.17!13.71!RUNX1T1;;chr9:109625401..109625458,+!p1@ZNF462!1.16!35.39!ZNF462;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.16!28.42!ZNF395;;chr2:214016314..214016343,-!p2@IKZF2!1.16!22.56!IKZF2;;chr7:64023410..64023428,-!p2@ZNF680!1.16!21.34!ZNF680;;chr18:52989081..52989117,-!p7@TCF4!1.16!20.57!TCF4;;chr10:48355030..48355090,+!p1@ZNF488!1.16!17.36!ZNF488;;chr1:61548118..61548129,+!p9@NFIA!1.16!15.15!NFIA;;chr11:125034586..125034604,+!p3@PKNOX2!1.16!13.49!PKNOX2;;chr8:145560111..145560165,-!p2@SCRT1!1.16!13.49!SCRT1;;chr8:53166916..53166925,-!p10@ST18!1.16!13.38!ST18;;chr7:64023441..64023462,-!p1@ZNF680!1.15!104.50!ZNF680;;chr8:30890810..30890880,-!p1@PURG!1.15!13.16!PURG;;chr8:53162037..53162058,-!p5@ST18!1.15!13.05!ST18;;chr2:17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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001895;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002037 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006215,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10166-103B4 | |id=FF:10166-103B4 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0010083 | ||
|is_obsolete= | |||
|library_id=CNhs12323 | |||
|library_id_phase_based=2:CNhs12323 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10166 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10166 | |||
|name=cerebellum, adult, donor10252 | |name=cerebellum, adult, donor10252 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 64: | ||
|profile_cagescan=NCig10037,,, | |profile_cagescan=NCig10037,,, | ||
|profile_hcage=CNhs12323,LSID913,release011,COMPLETED | |profile_hcage=CNhs12323,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 81: | ||
|rna_tube_id=103B4 | |rna_tube_id=103B4 | ||
|rna_weight_ug=62.007 | |rna_weight_ug=62.007 | ||
|rnaseq_library_id=RDhi10099 | |||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 104: | ||
|sample_tissue=cerebellum | |sample_tissue=cerebellum | ||
|top_motifs=CUX2:4.21300666186;ZFP161:4.02000292325;REST:3.81158405336;AHR_ARNT_ARNT2:3.6944116877;FOXM1:3.6021786578;MED-1{core}:3.47623753186;RREB1:3.36240170454;RORA:3.33565401713;FOX{I1,J2}:3.23547363542;MZF1:3.22168560823;POU6F1:3.18695484596;DBP:3.16282764083;ARID5B:3.1095577716;PRDM1:3.09433455395;PAX4:3.0134059983;MYFfamily:2.99425227763;ALX1:2.97991882175;ATF2:2.86606739696;GTF2I:2.84994448512;EGR1..3:2.83195846136;FOXQ1:2.80321190374;BREu{core}:2.77312776933;HMGA1,2:2.69402603766;POU3F1..4:2.68904645283;ZBTB6:2.67304059993;NRF1:2.63528856044;PATZ1:2.58776116382;PAX6:2.50982626866;FOXP1:2.47417571147;NHLH1,2:2.42068704593;LMO2:2.36081872016;TFAP2B:2.36057640495;MTE{core}:2.3094128643;GATA4:2.28893588685;BPTF:2.27920424118;CDC5L:2.21938195547;SOX5:2.19723556834;GCM1,2:2.19356684995;POU5F1:2.17201113885;ADNP_IRX_SIX_ZHX:2.17065721162;RBPJ:2.1519993201;OCT4_SOX2{dimer}:2.15191203459;MTF1:2.11913255358;TOPORS:2.09999882572;NFIX:2.09965753395;STAT1,3:2.06761848341;TGIF1:2.04672083671;NFIL3:1.99021140719;HIC1:1.98594038225;IKZF2:1.93392163432;SOX{8,9,10}:1.91562460435;KLF4:1.83335279566;ONECUT1,2:1.7678678063;SOX2:1.73810647749;RFX2..5_RFXANK_RFXAP:1.71768830249;FOXO1,3,4:1.69931081391;SMAD1..7,9:1.66842857665;HOXA9_MEIS1:1.66146408631;GFI1B:1.6504492614;ZNF143:1.64804608824;MAZ:1.6320560025;FOX{D1,D2}:1.62940238879;AR:1.62892378633;EP300:1.38149345136;MYOD1:1.36671984468;RFX1:1.35817266325;PDX1:1.31671742523;YY1:1.27713605113;PAX5:1.23972522853;NKX3-2:1.20319435348;ZNF423:1.18364248542;POU1F1:1.16141357766;FOX{F1,F2,J1}:1.15960423678;TEF:1.15137109652;TFDP1:1.08261559085;PRRX1,2:1.05632159113;MEF2{A,B,C,D}:0.987715730829;NFY{A,B,C}:0.987070765669;TLX1..3_NFIC{dimer}:0.984248120899;ZBTB16:0.965886601982;SP1:0.940829385956;ZEB1:0.890202467557;HOX{A4,D4}:0.872147242166;SPZ1:0.869697827613;SREBF1,2:0.85766609242;MYBL2:0.832803300994;XBP1:0.801993423199;JUN:0.75801000005;FOXN1:0.74135379259;NR3C1:0.739683898888;NKX2-3_NKX2-5:0.730757305943;ATF5_CREB3:0.725441953615;GTF2A1,2:0.702096123726;ZNF384:0.676351731036;GZF1:0.669788395999;ZIC1..3:0.666327710698;GFI1:0.642430381468;HAND1,2:0.620690935122;LEF1_TCF7_TCF7L1,2:0.608622362168;SOX17:0.601027198342;PITX1..3:0.583960686006;XCPE1{core}:0.542952265666;MAFB:0.518309665673;FOXL1:0.496374516671;NANOG:0.479352187239;CREB1:0.39368322696;FOXA2:0.352860213594;TFAP2{A,C}:0.318004698455;EVI1:0.281118375533;PAX2:0.267772444333;NKX2-1,4:0.251806059215;TLX2:0.249429667248;AIRE:0.224519662245;PAX3,7:0.182066331382;VSX1,2:0.167967661772;CRX:0.15450250334;ESRRA:0.1489643657;NFATC1..3:0.0674040460166;FOXD3:0.0671401603875;LHX3,4:0.0274408439194;T:0.00951897170992;UFEwm:-0.0130112030954;HBP1_HMGB_SSRP1_UBTF:-0.0978275120093;FOXP3:-0.10019512242;SNAI1..3:-0.103430729452;ATF6:-0.11876732668;ATF4:-0.119704421405;PAX1,9:-0.187476464943;NKX6-1,2:-0.252356367165;HMX1:-0.294704585751;IRF7:-0.365648523942;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.481038090898;ESR1:-0.489943622738;EBF1:-0.491182017879;SPIB:-0.522163498033;PAX8:-0.5303073931;ZNF238:-0.542777814048;IRF1,2:-0.575769938429;NANOG{mouse}:-0.588939539134;HIF1A:-0.636427085753;HOX{A6,A7,B6,B7}:-0.719864409527;HSF1,2:-0.738981437916;CDX1,2,4:-0.766719358057;NFE2L2:-0.771237276182;SPI1:-0.774748572699;E2F1..5:-0.83414235455;PBX1:-0.834718113561;TEAD1:-0.85817061064;GATA6:-0.872932613938;NFE2:-0.882251508664;TFCP2:-0.885202661965;DMAP1_NCOR{1,2}_SMARC:-0.917112504923;TAL1_TCF{3,4,12}:-0.946057854964;NFE2L1:-0.963992130102;STAT2,4,6:-0.973032767012;HNF4A_NR2F1,2:-1.00155096705;HNF1A:-1.01617637565;FOSL2:-1.01839362642;STAT5{A,B}:-1.02390769901;IKZF1:-1.05068059674;HOX{A5,B5}:-1.10185321678;ELK1,4_GABP{A,B1}:-1.12591761507;NKX3-1:-1.13081405117;ETS1,2:-1.13142458582;PPARG:-1.15822483963;NR5A1,2:-1.18037293215;CEBPA,B_DDIT3:-1.20134770841;NFKB1_REL_RELA:-1.20301152746;TP53:-1.23223653676;TFAP4:-1.24335696003;FOS_FOS{B,L1}_JUN{B,D}:-1.28533537507;bHLH_family:-1.2966393211;POU2F1..3:-1.30610532228;RUNX1..3:-1.36683810653;BACH2:-1.37139978693;HLF:-1.50610612483;ELF1,2,4:-1.52654597712;RXR{A,B,G}:-1.58958196125;RXRA_VDR{dimer}:-1.64131144941;MYB:-1.65624418348;HES1:-1.79921677213;ALX4:-1.84837166239;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.94990722747;SRF:-2.04451175345;GLI1..3:-2.19763726309;NKX2-2,8:-2.23783764487;ZNF148:-2.36512261713;NR6A1:-2.43849489977;TBP:-2.50532483752;TBX4,5:-2.57481086419;NR1H4:-2.81525489974;EN1,2:-3.10954304266 | |top_motifs=CUX2:4.21300666186;ZFP161:4.02000292325;REST:3.81158405336;AHR_ARNT_ARNT2:3.6944116877;FOXM1:3.6021786578;MED-1{core}:3.47623753186;RREB1:3.36240170454;RORA:3.33565401713;FOX{I1,J2}:3.23547363542;MZF1:3.22168560823;POU6F1:3.18695484596;DBP:3.16282764083;ARID5B:3.1095577716;PRDM1:3.09433455395;PAX4:3.0134059983;MYFfamily:2.99425227763;ALX1:2.97991882175;ATF2:2.86606739696;GTF2I:2.84994448512;EGR1..3:2.83195846136;FOXQ1:2.80321190374;BREu{core}:2.77312776933;HMGA1,2:2.69402603766;POU3F1..4:2.68904645283;ZBTB6:2.67304059993;NRF1:2.63528856044;PATZ1:2.58776116382;PAX6:2.50982626866;FOXP1:2.47417571147;NHLH1,2:2.42068704593;LMO2:2.36081872016;TFAP2B:2.36057640495;MTE{core}:2.3094128643;GATA4:2.28893588685;BPTF:2.27920424118;CDC5L:2.21938195547;SOX5:2.19723556834;GCM1,2:2.19356684995;POU5F1:2.17201113885;ADNP_IRX_SIX_ZHX:2.17065721162;RBPJ:2.1519993201;OCT4_SOX2{dimer}:2.15191203459;MTF1:2.11913255358;TOPORS:2.09999882572;NFIX:2.09965753395;STAT1,3:2.06761848341;TGIF1:2.04672083671;NFIL3:1.99021140719;HIC1:1.98594038225;IKZF2:1.93392163432;SOX{8,9,10}:1.91562460435;KLF4:1.83335279566;ONECUT1,2:1.7678678063;SOX2:1.73810647749;RFX2..5_RFXANK_RFXAP:1.71768830249;FOXO1,3,4:1.69931081391;SMAD1..7,9:1.66842857665;HOXA9_MEIS1:1.66146408631;GFI1B:1.6504492614;ZNF143:1.64804608824;MAZ:1.6320560025;FOX{D1,D2}:1.62940238879;AR:1.62892378633;EP300:1.38149345136;MYOD1:1.36671984468;RFX1:1.35817266325;PDX1:1.31671742523;YY1:1.27713605113;PAX5:1.23972522853;NKX3-2:1.20319435348;ZNF423:1.18364248542;POU1F1:1.16141357766;FOX{F1,F2,J1}:1.15960423678;TEF:1.15137109652;TFDP1:1.08261559085;PRRX1,2:1.05632159113;MEF2{A,B,C,D}:0.987715730829;NFY{A,B,C}:0.987070765669;TLX1..3_NFIC{dimer}:0.984248120899;ZBTB16:0.965886601982;SP1:0.940829385956;ZEB1:0.890202467557;HOX{A4,D4}:0.872147242166;SPZ1:0.869697827613;SREBF1,2:0.85766609242;MYBL2:0.832803300994;XBP1:0.801993423199;JUN:0.75801000005;FOXN1:0.74135379259;NR3C1:0.739683898888;NKX2-3_NKX2-5:0.730757305943;ATF5_CREB3:0.725441953615;GTF2A1,2:0.702096123726;ZNF384:0.676351731036;GZF1:0.669788395999;ZIC1..3:0.666327710698;GFI1:0.642430381468;HAND1,2:0.620690935122;LEF1_TCF7_TCF7L1,2:0.608622362168;SOX17:0.601027198342;PITX1..3:0.583960686006;XCPE1{core}:0.542952265666;MAFB:0.518309665673;FOXL1:0.496374516671;NANOG:0.479352187239;CREB1:0.39368322696;FOXA2:0.352860213594;TFAP2{A,C}:0.318004698455;EVI1:0.281118375533;PAX2:0.267772444333;NKX2-1,4:0.251806059215;TLX2:0.249429667248;AIRE:0.224519662245;PAX3,7:0.182066331382;VSX1,2:0.167967661772;CRX:0.15450250334;ESRRA:0.1489643657;NFATC1..3:0.0674040460166;FOXD3:0.0671401603875;LHX3,4:0.0274408439194;T:0.00951897170992;UFEwm:-0.0130112030954;HBP1_HMGB_SSRP1_UBTF:-0.0978275120093;FOXP3:-0.10019512242;SNAI1..3:-0.103430729452;ATF6:-0.11876732668;ATF4:-0.119704421405;PAX1,9:-0.187476464943;NKX6-1,2:-0.252356367165;HMX1:-0.294704585751;IRF7:-0.365648523942;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.481038090898;ESR1:-0.489943622738;EBF1:-0.491182017879;SPIB:-0.522163498033;PAX8:-0.5303073931;ZNF238:-0.542777814048;IRF1,2:-0.575769938429;NANOG{mouse}:-0.588939539134;HIF1A:-0.636427085753;HOX{A6,A7,B6,B7}:-0.719864409527;HSF1,2:-0.738981437916;CDX1,2,4:-0.766719358057;NFE2L2:-0.771237276182;SPI1:-0.774748572699;E2F1..5:-0.83414235455;PBX1:-0.834718113561;TEAD1:-0.85817061064;GATA6:-0.872932613938;NFE2:-0.882251508664;TFCP2:-0.885202661965;DMAP1_NCOR{1,2}_SMARC:-0.917112504923;TAL1_TCF{3,4,12}:-0.946057854964;NFE2L1:-0.963992130102;STAT2,4,6:-0.973032767012;HNF4A_NR2F1,2:-1.00155096705;HNF1A:-1.01617637565;FOSL2:-1.01839362642;STAT5{A,B}:-1.02390769901;IKZF1:-1.05068059674;HOX{A5,B5}:-1.10185321678;ELK1,4_GABP{A,B1}:-1.12591761507;NKX3-1:-1.13081405117;ETS1,2:-1.13142458582;PPARG:-1.15822483963;NR5A1,2:-1.18037293215;CEBPA,B_DDIT3:-1.20134770841;NFKB1_REL_RELA:-1.20301152746;TP53:-1.23223653676;TFAP4:-1.24335696003;FOS_FOS{B,L1}_JUN{B,D}:-1.28533537507;bHLH_family:-1.2966393211;POU2F1..3:-1.30610532228;RUNX1..3:-1.36683810653;BACH2:-1.37139978693;HLF:-1.50610612483;ELF1,2,4:-1.52654597712;RXR{A,B,G}:-1.58958196125;RXRA_VDR{dimer}:-1.64131144941;MYB:-1.65624418348;HES1:-1.79921677213;ALX4:-1.84837166239;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.94990722747;SRF:-2.04451175345;GLI1..3:-2.19763726309;NKX2-2,8:-2.23783764487;ZNF148:-2.36512261713;NR6A1:-2.43849489977;TBP:-2.50532483752;TBX4,5:-2.57481086419;NR1H4:-2.81525489974;EN1,2:-3.10954304266 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10166-103B4;search_select_hide=table117:FF:10166-103B4 | |||
}} | }} | ||
Latest revision as of 12:24, 3 June 2020
| Name: | cerebellum, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12323 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12323
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12323
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0506 |
| 10 | 10 | 0.0776 |
| 100 | 100 | 0.482 |
| 101 | 101 | 0.814 |
| 102 | 102 | 0.608 |
| 103 | 103 | 0.0604 |
| 104 | 104 | 0.123 |
| 105 | 105 | 0.163 |
| 106 | 106 | 0.0111 |
| 107 | 107 | 0.0395 |
| 108 | 108 | 0.717 |
| 109 | 109 | 0.00233 |
| 11 | 11 | 0.0179 |
| 110 | 110 | 0.0581 |
| 111 | 111 | 0.362 |
| 112 | 112 | 0.372 |
| 113 | 113 | 0.366 |
| 114 | 114 | 0.188 |
| 115 | 115 | 0.994 |
| 116 | 116 | 0.207 |
| 117 | 117 | 0.0165 |
| 118 | 118 | 0.274 |
| 119 | 119 | 0.298 |
| 12 | 12 | 0.748 |
| 120 | 120 | 0.156 |
| 121 | 121 | 0.673 |
| 122 | 122 | 0.904 |
| 123 | 123 | 0.304 |
| 124 | 124 | 0.381 |
| 125 | 125 | 0.292 |
| 126 | 126 | 0.0459 |
| 127 | 127 | 0.389 |
| 128 | 128 | 0.148 |
| 129 | 129 | 0.435 |
| 13 | 13 | 0.00412 |
| 130 | 130 | 0.155 |
| 131 | 131 | 0.288 |
| 132 | 132 | 0.738 |
| 133 | 133 | 0.372 |
| 134 | 134 | 0.501 |
| 135 | 135 | 0.703 |
| 136 | 136 | 0.00277 |
| 137 | 137 | 0.558 |
| 138 | 138 | 0.825 |
| 139 | 139 | 0.118 |
| 14 | 14 | 0.71 |
| 140 | 140 | 0.754 |
| 141 | 141 | 0.575 |
| 142 | 142 | 0.795 |
| 143 | 143 | 0.0624 |
| 144 | 144 | 0.959 |
| 145 | 145 | 0.226 |
| 146 | 146 | 0.537 |
| 147 | 147 | 0.901 |
| 148 | 148 | 0.0195 |
| 149 | 149 | 0.0737 |
| 15 | 15 | 0.0936 |
| 150 | 150 | 0.223 |
| 151 | 151 | 0.65 |
| 152 | 152 | 0.0306 |
| 153 | 153 | 0.982 |
| 154 | 154 | 0.624 |
| 155 | 155 | 0.516 |
| 156 | 156 | 0.579 |
| 157 | 157 | 0.353 |
| 158 | 158 | 0.0409 |
| 159 | 159 | 0.00616 |
| 16 | 16 | 0.0597 |
| 160 | 160 | 0.215 |
| 161 | 161 | 0.298 |
| 162 | 162 | 0.768 |
| 163 | 163 | 0.828 |
| 164 | 164 | 0.0852 |
| 165 | 165 | 0.0763 |
| 166 | 166 | 0.703 |
| 167 | 167 | 0.888 |
| 168 | 168 | 0.322 |
| 169 | 169 | 0.0197 |
| 17 | 17 | 0.0887 |
| 18 | 18 | 0.141 |
| 19 | 19 | 0.234 |
| 2 | 2 | 0.77 |
| 20 | 20 | 0.318 |
| 21 | 21 | 0.0707 |
| 22 | 22 | 0.202 |
| 23 | 23 | 0.164 |
| 24 | 24 | 0.0504 |
| 25 | 25 | 0.499 |
| 26 | 26 | 0.00113 |
| 27 | 27 | 0.494 |
| 28 | 28 | 0.767 |
| 29 | 29 | 0.0218 |
| 3 | 3 | 0.0559 |
| 30 | 30 | 0.923 |
| 31 | 31 | 0.897 |
| 32 | 32 | 0.0486 |
| 33 | 33 | 0.0604 |
| 34 | 34 | 0.554 |
| 35 | 35 | 0.763 |
| 36 | 36 | 0.202 |
| 37 | 37 | 0.0412 |
| 38 | 38 | 0.345 |
| 39 | 39 | 0.169 |
| 4 | 4 | 0.849 |
| 40 | 40 | 0.0493 |
| 41 | 41 | 0.224 |
| 42 | 42 | 0.243 |
| 43 | 43 | 0.113 |
| 44 | 44 | 0.182 |
| 45 | 45 | 0.652 |
| 46 | 46 | 0.0556 |
| 47 | 47 | 0.0535 |
| 48 | 48 | 0.0919 |
| 49 | 49 | 0.271 |
| 5 | 5 | 0.463 |
| 50 | 50 | 0.359 |
| 51 | 51 | 0.4 |
| 52 | 52 | 0.294 |
| 53 | 53 | 0.848 |
| 54 | 54 | 0.387 |
| 55 | 55 | 0.616 |
| 56 | 56 | 0.362 |
| 57 | 57 | 0.367 |
| 58 | 58 | 0.344 |
| 59 | 59 | 0.0396 |
| 6 | 6 | 0.959 |
| 60 | 60 | 0.0353 |
| 61 | 61 | 0.0734 |
| 62 | 62 | 0.147 |
| 63 | 63 | 0.136 |
| 64 | 64 | 0.29 |
| 65 | 65 | 0.225 |
| 66 | 66 | 0.272 |
| 67 | 67 | 0.43 |
| 68 | 68 | 0.164 |
| 69 | 69 | 0.355 |
| 7 | 7 | 0.0619 |
| 70 | 70 | 0.0165 |
| 71 | 71 | 0.0131 |
| 72 | 72 | 0.313 |
| 73 | 73 | 0.0187 |
| 74 | 74 | 0.84 |
| 75 | 75 | 0.0573 |
| 76 | 76 | 0.486 |
| 77 | 77 | 0.103 |
| 78 | 78 | 0.0308 |
| 79 | 79 | 0.349 |
| 8 | 8 | 0.0311 |
| 80 | 80 | 0.198 |
| 81 | 81 | 0.421 |
| 82 | 82 | 0.478 |
| 83 | 83 | 0.0259 |
| 84 | 84 | 0.697 |
| 85 | 85 | 0.121 |
| 86 | 86 | 0.246 |
| 87 | 87 | 2.3479e-4 |
| 88 | 88 | 0.83 |
| 89 | 89 | 0.19 |
| 9 | 9 | 0.33 |
| 90 | 90 | 0.0782 |
| 91 | 91 | 0.773 |
| 92 | 92 | 0.391 |
| 93 | 93 | 0.942 |
| 94 | 94 | 0.186 |
| 95 | 95 | 0.012 |
| 96 | 96 | 0.883 |
| 97 | 97 | 0.665 |
| 98 | 98 | 0.379 |
| 99 | 99 | 0.407 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12323
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010083 human cerebellum - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002037 (cerebellum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002028 (hindbrain)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010083 (human cerebellum - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006215 (rhombic lip)
UBERON:0010316 (germ layer / neural crest)
