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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004824
|accession_numbers=CAGE;DRX007815;DRR008687;DRZ000112;DRZ001497;DRZ011462;DRZ012847
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.52!330.36!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.28!191.71!SPI1;;chr6:135502501..135502546,+!p1@MYB!2.04!130.64!MYB;;chr2:68592406..68592424,+!p1@PLEK!1.99!96.94!PLEK;;chr9:96717629..96717644,-!p1@BARX1!1.86!70.91!BARX1;;chr12:54778471..54778528,-!p1@ZNF385A!1.86!70.74!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!1.76!56.56!TFEC;;chr6:135502408..135502459,+!p2@MYB!1.72!58.73!MYB;;chr2:63277948..63277974,+!p1@OTX1!1.71!49.72!OTX1;;chr19:33793430..33793447,-!p1@CEBPA!1.69!194.38!CEBPA;;chr3:18486354..18486377,-!p2@SATB1!1.69!58.90!SATB1;;chr1:92951607..92951661,-!p1@GFI1!1.59!38.04!GFI1;;chr13:72441315..72441454,-!p1@DACH1!1.58!71.91!DACH1;;chr1:92949331..92949377,-!p2@GFI1!1.57!36.37!GFI1;;chr2:200322654..200322707,-!p2@SATB2!1.53!47.72!SATB2;;chr10:31288398..31288455,-!p2@ZNF438!1.50!35.87!ZNF438;;chr1:156460436..156460462,-!p7@MEF2D!1.50!30.87!MEF2D;;chr1:41157421..41157482,+!p2@NFYC!1.43!285.98!NFYC;;chr7:50344289..50344323,+!p1@IKZF1!1.43!26.03!IKZF1;;chr1:41157363..41157416,+!p1@NFYC!1.42!460.17!NFYC;;chr7:137620650..137620677,-!p3@CREB3L2!1.42!25.19!CREB3L2;;chr2:175199675..175199688,+!p1@SP9!1.41!24.86!SP9;;chr11:47400062..47400077,-!p2@SPI1!1.41!24.53!SPI1;;chr6:135516877..135516900,+!p5@MYB!1.39!23.36!MYB;;chr5:72744594..72744609,-!p1@FOXD1!1.37!99.11!FOXD1;;chr5:88178983..88179012,-!p1@MEF2C!1.35!160.34!MEF2C;;chr6:85473156..85473210,-!p2@TBX18!1.34!25.53!TBX18;;chr1:40997285..40997352,+!p1@ZNF684!1.33!70.58!ZNF684;;chr1:40942922..40942997,+!p1@ZNF642!1.33!52.39!ZNF642;;chr1:40997363..40997392,+!p2@ZNF684!1.32!25.69!ZNF684;;chr7:27205136..27205164,-!p1@HOXA9!1.32!19.86!HOXA9;;chr7:137620684..137620711,-!p4@CREB3L2!1.32!19.69!CREB3L2;;chr6:34204973..34204990,+!p4@HMGA1!1.29!236.76!HMGA1;;chr7:113726357..113726443,+!p1@FOXP2!1.29!31.87!FOXP2;;chr2:145277640..145277771,-!p1@ZEB2!1.28!235.59!ZEB2;;chr6:135502472..135502489,+!p3@MYB!1.28!18.02!MYB;;chr2:63277978..63277995,+!p2@OTX1!1.27!17.69!OTX1;;chr1:156470515..156470542,-!p2@MEF2D!1.26!87.93!MEF2D;;chr1:3569072..3569093,+!p1@TP73!1.26!17.35!TP73;;chr1:50889103..50889145,-!p1@DMRTA2!1.26!17.02!DMRTA2;;chr18:55102598..55102623,+!p1@ONECUT2!1.25!16.68!ONECUT2;;chr1:247171316..247171336,-!p3@ZNF695!1.24!24.19!ZNF695;;chr7:27205106..27205134,-!p2@HOXA9!1.24!16.52!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!1.24!16.52!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!1.24!16.35!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.23!16.02!HOXA11;;chr11:47399996..47400014,-!p4@SPI1!1.22!15.52!SPI1;;chr18:22932080..22932170,-!p1@ZNF521!1.21!63.40!ZNF521;;chr14:75988771..75988826,+!p1@BATF!1.21!20.36!BATF;;chr6:135516909..135516925,+!p6@MYB!1.21!15.18!MYB;;chr16:54319010..54319041,-!p8@IRX3!1.19!14.52!IRX3;;chr3:18480217..18480239,-!p3@SATB1!1.19!14.35!SATB1;;chr7:50343634..50343717,+!p2@IKZF1!1.18!14.02!IKZF1;;chr3:157824001..157824078,-!p2@SHOX2!1.17!13.85!SHOX2;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!1.16!48.39!ZNF670;;chr7:128577972..128578047,+!p1@IRF5!1.16!21.36!IRF5;;chr18:22805268..22805280,-!p8@ZNF521!1.16!13.35!ZNF521;;chr1:92952473..92952489,-!p3@GFI1!1.15!13.01!GFI1;;chr3:157824202..157824211,-!p3@SHOX2!1.15!13.01!SHOX2;;chr2:68592394..68592405,+!p2@PLEK!1.14!12.68!PLEK;;chr1:156460473..156460486,-!p12@MEF2D!1.14!12.68!MEF2D;;chr10:31288370..31288393,-!p3@ZNF438!1.13!12.51!ZNF438;;chr13:41593425..41593480,-!p1@ELF1!1.11!75.75!ELF1;;chr20:42295745..42295765,+!p1@MYBL2!1.10!187.37!MYBL2;;chr11:47399947..47399961,-!p3@SPI1!1.09!11.35!SPI1;;chr16:54320646..54320672,-!p2@IRX3!1.07!16.52!IRX3;;chr18:55102628..55102646,+!p2@ONECUT2!1.06!10.51!ONECUT2;;chrY:21906594..21906622,-!p1@KDM5D!1.06!10.51!KDM5D;;chr17:41277372..41277418,-!p1@BRCA1!1.05!37.21!BRCA1;;chr2:175199697..175199706,+!p2@SP9!1.05!10.34!SP9;;chr20:42295713..42295738,+!p2@MYBL2!1.04!59.06!MYBL2;;chr1:167298300..167298319,+!p2@POU2F1!1.04!10.01!POU2F1;;chr2:200322229..200322251,-!p3@SATB2!1.04!9.84!SATB2;;chr17:79881332..79881348,-!p3@MAFG!1.03!14.18!MAFG;;chr16:54320617..54320643,-!p3@IRX3!1.03!12.68!IRX3;;chr17:48072574..48072597,-!p1@DLX3!1.02!9.51!DLX3;;chr7:50344251..50344288,+!p3@IKZF1!1.01!9.18!IKZF1;;chr2:100759037..100759058,-!p2@AFF3!1.00!9.01!AFF3;;chr13:72441074..72441172,-!p2@DACH1!0.99!8.84!DACH1;;chr1:167298384..167298412,+!p3@POU2F1!0.99!8.68!POU2F1;;chr1:40627038..40627071,+!p1@RLF!0.98!113.96!RLF;;chr15:57511609..57511651,+!p2@TCF12!0.98!14.52!TCF12;;chr11:128563948..128564003,+!p1@FLI1!0.97!103.78!FLI1;;chr19:13213662..13213686,-!p1@LYL1!0.96!12.18!LYL1;;chr1:156470494..156470505,-!p3@MEF2D!0.96!12.01!MEF2D;;chr11:47400032..47400043,-!p5@SPI1!0.96!8.18!SPI1;;chr16:54320158..54320200,-!p5@IRX3!0.95!11.68!IRX3;;chr10:135044190..135044229,+!p3@UTF1!0.95!8.01!UTF1;;chr7:27239703..27239715,-!p1@HOXA13!0.95!8.01!HOXA13;;chr9:1050331..1050363,+!p1@DMRT2!0.95!8.01!DMRT2;;chr1:92949505..92949543,-!p5@GFI1!0.95!7.84!GFI1;;chr16:54320675..54320715,-!p1@IRX3!0.93!16.85!IRX3;;chr2:185463247..185463263,+!p1@ZNF804A!0.93!13.51!ZNF804A;;chr3:18467290..18467311,-!p8@SATB1!0.93!7.51!SATB1;;chr16:54320280..54320291,-!p9@IRX3!0.93!7.51!IRX3;;chr1:41157266..41157314,+!p3@NFYC!0.92!64.90!NFYC;;chr7:64838786..64838809,+!p2@ZNF92!0.92!43.21!ZNF92;;chr12:54694758..54694805,-!p1@NFE2!0.92!8.84!NFE2;;chr19:13213954..13214021,-!p4@LYL1!0.92!7.34!LYL1;;chr2:145277882..145277967,-!p3@ZEB2!0.90!12.35!ZEB2;;chr20:21378152..21378169,-!p1@NKX2-4!0.90!7.01!NKX2-4;;chr1:247171347..247171366,-!p2@ZNF695!0.89!12.68!ZNF695;;chrX:66763856..66763896,+!p1@AR!0.89!10.01!AR;;chr19:23299814..23299844,+!p1@ZNF730!0.89!8.34!ZNF730;;chr2:200320768..200320800,-!p4@SATB2!0.89!6.67!SATB2;;chr19:20011744..20011770,+!p1@ZNF93!0.88!26.70!ZNF93;;chr19:22605097..22605121,-!p2@ZNF98!0.88!6.51!ZNF98;;chr19:50922187..50922204,+!p1@SPIB!0.88!6.51!SPIB;;chr21:34442439..34442455,+!p1@OLIG1!0.88!6.51!OLIG1;;chr19:22817119..22817145,+!p1@ZNF492!0.87!11.01!ZNF492;;chr2:145275947..145275981,-!p10@ZEB2!0.87!6.34!ZEB2;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.19!TWIST1;;chr6:45390300..45390335,+!p4@RUNX2!0.86!10.01!RUNX2;;chr16:54320101..54320125,-!p4@IRX3!0.86!9.18!IRX3;;chr16:54320322..54320343,-!p7@IRX3!0.85!6.01!IRX3;;chr2:100759010..100759035,-!p1@AFF3!0.85!6.01!AFF3;;chr21:36421535..36421610,-!p2@RUNX1!0.84!22.52!RUNX1;;chr6:45390269..45390298,+!p5@RUNX2!0.84!10.18!RUNX2;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.84!TBX20;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.84!ZFY;;chr19:22605136..22605154,-!p1@ZNF98!0.84!5.84!ZNF98;;chr12:54694807..54694832,-!p3@NFE2!0.84!5.84!NFE2;;chr13:100623375..100623425,-!p1@ZIC5!0.84!5.84!ZIC5;;chr5:88179017..88179046,-!p2@MEF2C!0.83!24.86!MEF2C;;chr6:144385698..144385742,-!p2@PLAGL1!0.83!7.17!PLAGL1;;chr7:64363638..64363667,+!p1@ZNF273!0.82!30.20!ZNF273;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.82!27.53!TAL1;;chr3:157823517..157823562,-!p1@SHOX2!0.82!6.01!SHOX2;;chr1:167298425..167298440,+!p8@POU2F1!0.82!5.67!POU2F1;;chr5:71803177..71803255,-!p1@ZNF366!0.82!5.67!ZNF366;;chr7:113726226..113726245,+!p3@FOXP2!0.82!5.67!FOXP2;;chr7:27239740..27239759,-!p2@HOXA13!0.82!5.67!HOXA13;;chr11:44331576..44331650,-!p1@ALX4!0.82!5.67!ALX4;;chr11:47400045..47400060,-!p6@SPI1!0.82!5.67!SPI1;;chr13:100634031..100634045,+!p1@ZIC2!0.82!5.67!ZIC2;;chr1:156460402..156460417,-!p22@MEF2D!0.81!5.51!MEF2D;;chr3:71630980..71631110,-!p3@FOXP1!0.80!19.86!FOXP1;;chr19:13213704..13213726,-!p3@LYL1!0.80!7.17!LYL1;;chr1:41157641..41157665,+!p7@NFYC!0.80!7.01!NFYC;;chr18:22804637..22804660,-!p10@ZNF521!0.80!5.34!ZNF521;;chr5:122424918..122424944,+!p1@PRDM6!0.80!5.34!PRDM6;;chr2:200325204..200325243,-!p7@SATB2!0.80!5.34!SATB2;;chr2:200322711..200322722,-!p10@SATB2!0.79!5.17!SATB2;;chr13:41593392..41593403,-!p7@ELF1!0.79!5.17!ELF1;;chr7:114054885..114054910,+!p4@FOXP2!0.79!5.17!FOXP2;;chr9:126774018..126774055,+!p1@LHX2!0.78!5.01!LHX2;;chr1:43148059..43148108,+!p1@YBX1!0.77!342.87!YBX1;;chr1:45805872..45805900,+!p2@TOE1!0.77!12.68!TOE1;;chr1:40367530..40367597,-!p1@MYCL1!0.77!9.34!MYCL1;;chr10:22292591..22292606,-!p2@DNAJC1!0.77!8.34!DNAJC1;;chrY:21906761..21906810,-!p2@KDM5D!0.77!4.84!KDM5D;;chr18:22931979..22931992,-!p3@ZNF521!0.77!4.84!ZNF521;;chr19:3574330..3574393,+!p2@HMG20B!0.77!4.84!HMG20B;;chr2:145275982..145276003,-!p7@ZEB2!0.77!4.84!ZEB2;;chr6:135513595..135513617,+!p4@MYB!0.77!4.84!MYB;;chr19:45971246..45971265,+!p1@FOSB!0.76!97.61!FOSB;;chr1:41157671..41157695,+!p6@NFYC!0.76!7.01!NFYC;;chr1:221052994..221053008,+!p6@HLX!0.76!5.67!HLX;;chr11:19263160..19263176,-!p1@E2F8!0.75!5.51!E2F8;;chr1:40105347..40105358,-!p2@HEYL!0.75!4.67!HEYL;;chr2:60780607..60780624,-!p2@BCL11A!0.74!14.85!BCL11A;;chr1:41204530..41204541,+!p8@NFYC!0.74!5.51!NFYC;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.74!4.50!ZNF469;;chr2:200322259..200322280,-!p5@SATB2!0.74!4.50!SATB2;;chr8:145669791..145669834,-!p1@TONSL!0.73!13.68!TONSL;;chr9:3525727..3525828,-!p2@RFX3!0.73!12.18!RFX3;;chr18:22932004..22932021,-!p2@ZNF521!0.73!4.34!ZNF521;;chr19:21950332..21950356,-!p2@ZNF100!0.72!9.68!ZNF100;;chr6:45390002..45390023,+!p6@RUNX2!0.72!7.84!RUNX2;;chr19:20011731..20011743,+!p3@ZNF93!0.72!5.67!ZNF93;;chr1:221052733..221052749,+!p2@HLX!0.72!5.67!HLX;;chr1:40105299..40105326,-!p1@HEYL!0.71!4.17!HEYL;;chr3:18480173..18480189,-!p6@SATB1!0.71!4.17!SATB1;;chr3:18487057..18487105,-!p4@SATB1!0.71!4.17!SATB1;;chr19:23433144..23433204,-!p1@ZNF724P!0.70!20.19!ZNF724P;;chr1:25256756..25256774,-!p1@RUNX3!0.70!8.18!RUNX3;;chr15:76629123..76629151,+!p1@ISL2!0.70!4.50!ISL2;;chr11:32457103..32457123,-!p3@WT1!0.70!4.00!WT1;;chr5:88120151..88120177,-!p6@MEF2C!0.70!4.00!MEF2C;;chr7:114054864..114054876,+!p11@FOXP2!0.70!4.00!FOXP2;;chr14:75745523..75745537,+!p1@FOS!0.69!537.42!FOS;;chr19:20011775..20011800,+!p2@ZNF93!0.69!7.51!ZNF93;;chrX:66763815..66763854,+!p2@AR!0.69!5.34!AR;;chr19:48774586..48774670,+!p1@ZNF114!0.69!5.01!ZNF114;;chr1:247267618..247267674,-!p1@ZNF669!0.68!34.20!ZNF669;;chr1:227751231..227751273,+!p1@ZNF678!0.68!27.70!ZNF678;;chr9:137217986..137218049,+!p3@RXRA!0.68!12.18!RXRA;;chr6:45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SRP1!0.21!69.41!SSRP1;;chr19:1863568..1863586,-!p1@KLF16!0.21!48.22!KLF16;;chr3:169491171..169491205,+!p1@MYNN!0.21!24.86!MYNN;;chr10:111967345..111967422,+!p1@MXI1!0.21!23.36!MXI1;;chr16:67226019..67226127,+!p1@E2F4!0.21!18.69!E2F4;;chr1:161015706..161015747,-!p1@USF1!0.21!16.85!USF1;;chr12:57916466..57916523,+!p2@MBD6!0.21!12.51!MBD6;;chr8:10697329..10697365,-!p2@PINX1,p2@SOX7!0.21!9.01!SOX7;;chr1:150849174..150849200,-!p2@ARNT!0.21!8.84!ARNT;;chr12:46123464..46123512,+!p1@ARID2!0.21!7.68!ARID2;;chr6:43139041..43139094,+!p3@SRF!0.21!7.51!SRF;;chr6:35227282..35227330,+!p2@ZNF76!0.21!4.67!ZNF76;;chr5:43121607..43121649,+!p4@ZNF131!0.21!3.34!ZNF131;;chr7:55955139..55955190,+!p1@ZNF713,p2@MRPS17!0.21!3.00!ZNF713;;chr10:44101902..44101932,+!p2@ZNF485!0.21!2.17!ZNF485;;chr11:130184311..130184362,-!p4@ZBTB44!0.21!1.84!ZBTB44;;chr5:43067583..43067606,+!p7@ZNF131!0.21!1.33!ZNF131;;chr15:42783258..42783270,-!p4@ZFP106!0.21!1.17!ZFP106;;chr14:58765305..58765324,+!p4@ARID4A!0.21!1.00!ARID4A;;chr11:47279248..47279264,+!p3@NR1H3!0.21!0.83!NR1H3;;chr12:27485733..27485742,+!p5@ARNTL2!0.21!0.83!ARNTL2;;chr17:17726892..17726903,-!p6@SREBF1!0.21!0.83!SREBF1;;chr3:170076223..170076242,+!p6@SKIL!0.21!0.83!SKIL;;chr1:35658736..35658754,-!p1@SFPQ!0.20!523.57!SFPQ;;chr10:60145155..60145206,+!p1@TFAM!0.20!61.73!TFAM;;chr19:33864600..33864732,+!p1@CEBPG!0.20!39.38!CEBPG;;chr6:56954919..56955000,+!p1@ZNF451!0.20!28.36!ZNF451;;chr1:27022164..27022220,+!p2@ARID1A!0.20!9.84!ARID1A;;chr6:35227480..35227546,+!p1@ZNF76!0.20!8.68!ZNF76;;chr19:58361185..58361235,+!p2@ZNF587!0.20!7.01!ZNF587;;chr19:9434841..9434886,+!p1@ZNF559!0.20!6.51!ZNF559;;chr16:67063211..67063240,+!p2@CBFB!0.20!6.17!CBFB;;chr17:42297028..42297056,-!p3@UBTF!0.20!5.01!UBTF;;chr14:89883412..89883478,-!p3@FOXN3!0.20!3.84!FOXN3;;chr9:2017063..2017144,+!p4@SMARCA2!0.20!3.67!SMARCA2;;chr19:37958318..37958365,-!p2@ZNF569!0.20!3.00!ZNF569;;chr12:48298765..48298783,-!p2@VDR!0.20!2.17!VDR;;chr8:124286670..124286702,-!p3@ZHX1!0.20!1.67!ZHX1;;chr6:45390442..45390479,+!p8@RUNX2!0.20!1.33!RUNX2;;chr16:67596356..67596367,+!p5@CTCF!0.20!1.17!CTCF;;chr19:53324884..53324886,-!p1@ZNF28!0.20!1.17!ZNF28;;chr6:42419290..42419314,-!p5@TRERF1!0.20!1.00!TRERF1;;chr8:116681247..116681261,-!p8@TRPS1!0.20!1.00!TRPS1;;chr10:105110720..105110744,-!p3@PCGF6!0.20!1.00!PCGF6;;chr16:29817199..29817222,+!p17@MAZ!0.20!1.00!MAZ;;chr2:176033066..176033087,-!p2@ATF2!0.20!1.00!ATF2;;chr2:219524193..219524205,-!p3@ZNF142!0.20!0.83!ZNF142;;chr6:20402070..20402082,+!p5@E2F3!0.20!0.83!E2F3;;chr19:58193388..58193411,+!p2@ZNF551,p4@ZNF776!0.20!0.83!ZNF551;;chr17:41623259..41623278,-!p7@ETV4!0.20!0.83!ETV4;;chr18:53255839..53255854,-!p13@TCF4!0.20!0.83!TCF4;;chr2:187350973..187351072,+!p1@ZC3H15!0.19!120.63!ZC3H15;;chr2:74374995..74375055,-!p1@BOLA3!0.19!61.90!BOLA3;;chr19:11071685..11071798,+!p1@SMARCA4!0.19!39.21!SMARCA4;;chr14:103058948..103059005,+!p1@RCOR1!0.19!37.87!RCOR1;;chr2:208394658..208394692,+!p1@CREB1!0.19!33.04!CREB1;;chr2:174828545..174828644,-!p1@SP3!0.19!20.86!SP3;;chr1:67390665..67390698,+!p1@MIER1!0.19!18.85!MIER1;;chr6:155635583..155635644,-!p1@TFB1M!0.19!17.69!TFB1M;;chr6:7107939..7107993,+!p1@RREB1!0.19!16.02!RREB1;;chr20:61493117..61493187,-!p1@TCFL5!0.19!15.35!TCFL5;;chr14:65569244..65569264,-!p2@MAX!0.19!15.35!MAX;;chr8:146052918..146052975,+!p1@ZNF7!0.19!14.85!ZNF7;;chr10:105110831..105110885,-!p1@PCGF6!0.19!13.01!PCGF6;;chr19:53141584..53141625,-!p2@ZNF83!0.19!10.51!ZNF83;;chr9:104161123..104161205,+!p1@ZNF189!0.19!9.18!ZNF189;;
|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.52!330.36!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.28!191.71!SPI1;;chr6:135502501..135502546,+!p1@MYB!2.04!130.64!MYB;;chr2:68592406..68592424,+!p1@PLEK!1.99!96.94!PLEK;;chr9:96717629..96717644,-!p1@BARX1!1.86!70.91!BARX1;;chr12:54778471..54778528,-!p1@ZNF385A!1.86!70.74!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!1.76!56.56!TFEC;;chr6:135502408..135502459,+!p2@MYB!1.72!58.73!MYB;;chr2:63277948..63277974,+!p1@OTX1!1.71!49.72!OTX1;;chr19:33793430..33793447,-!p1@CEBPA!1.69!194.38!CEBPA;;chr3:18486354..18486377,-!p2@SATB1!1.69!58.90!SATB1;;chr1:92951607..92951661,-!p1@GFI1!1.59!38.04!GFI1;;chr13:72441315..72441454,-!p1@DACH1!1.58!71.91!DACH1;;chr1:92949331..92949377,-!p2@GFI1!1.57!36.37!GFI1;;chr2:200322654..200322707,-!p2@SATB2!1.53!47.72!SATB2;;chr10:31288398..31288455,-!p2@ZNF438!1.50!35.87!ZNF438;;chr1:156460436..156460462,-!p7@MEF2D!1.50!30.87!MEF2D;;chr1:41157421..41157482,+!p2@NFYC!1.43!285.98!NFYC;;chr7:50344289..50344323,+!p1@IKZF1!1.43!26.03!IKZF1;;chr1:41157363..41157416,+!p1@NFYC!1.42!460.17!NFYC;;chr7:137620650..137620677,-!p3@CREB3L2!1.42!25.19!CREB3L2;;chr2:175199675..175199688,+!p1@SP9!1.41!24.86!SP9;;chr11:47400062..47400077,-!p2@SPI1!1.41!24.53!SPI1;;chr6:135516877..135516900,+!p5@MYB!1.39!23.36!MYB;;chr5:72744594..72744609,-!p1@FOXD1!1.37!99.11!FOXD1;;chr5:88178983..88179012,-!p1@MEF2C!1.35!160.34!MEF2C;;chr6:85473156..85473210,-!p2@TBX18!1.34!25.53!TBX18;;chr1:40997285..40997352,+!p1@ZNF684!1.33!70.58!ZNF684;;chr1:40942922..40942997,+!p1@ZNF642!1.33!52.39!ZNF642;;chr1:40997363..40997392,+!p2@ZNF684!1.32!25.69!ZNF684;;chr7:27205136..27205164,-!p1@HOXA9!1.32!19.86!HOXA9;;chr7:137620684..137620711,-!p4@CREB3L2!1.32!19.69!CREB3L2;;chr6:34204973..34204990,+!p4@HMGA1!1.29!236.76!HMGA1;;chr7:113726357..113726443,+!p1@FOXP2!1.29!31.87!FOXP2;;chr2:145277640..145277771,-!p1@ZEB2!1.28!235.59!ZEB2;;chr6:135502472..135502489,+!p3@MYB!1.28!18.02!MYB;;chr2:63277978..63277995,+!p2@OTX1!1.27!17.69!OTX1;;chr1:156470515..156470542,-!p2@MEF2D!1.26!87.93!MEF2D;;chr1:3569072..3569093,+!p1@TP73!1.26!17.35!TP73;;chr1:50889103..50889145,-!p1@DMRTA2!1.26!17.02!DMRTA2;;chr18:55102598..55102623,+!p1@ONECUT2!1.25!16.68!ONECUT2;;chr1:247171316..247171336,-!p3@ZNF695!1.24!24.19!ZNF695;;chr7:27205106..27205134,-!p2@HOXA9!1.24!16.52!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!1.24!16.52!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!1.24!16.35!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.23!16.02!HOXA11;;chr11:47399996..47400014,-!p4@SPI1!1.22!15.52!SPI1;;chr18:22932080..22932170,-!p1@ZNF521!1.21!63.40!ZNF521;;chr14:75988771..75988826,+!p1@BATF!1.21!20.36!BATF;;chr6:135516909..135516925,+!p6@MYB!1.21!15.18!MYB;;chr16:54319010..54319041,-!p8@IRX3!1.19!14.52!IRX3;;chr3:18480217..18480239,-!p3@SATB1!1.19!14.35!SATB1;;chr7:50343634..50343717,+!p2@IKZF1!1.18!14.02!IKZF1;;chr3:157824001..157824078,-!p2@SHOX2!1.17!13.85!SHOX2;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!1.16!48.39!ZNF670;;chr7:128577972..128578047,+!p1@IRF5!1.16!21.36!IRF5;;chr18:22805268..22805280,-!p8@ZNF521!1.16!13.35!ZNF521;;chr1:92952473..92952489,-!p3@GFI1!1.15!13.01!GFI1;;chr3:157824202..157824211,-!p3@SHOX2!1.15!13.01!SHOX2;;chr2:68592394..68592405,+!p2@PLEK!1.14!12.68!PLEK;;chr1:156460473..156460486,-!p12@MEF2D!1.14!12.68!MEF2D;;chr10:31288370..31288393,-!p3@ZNF438!1.13!12.51!ZNF438;;chr13:41593425..41593480,-!p1@ELF1!1.11!75.75!ELF1;;chr20:42295745..42295765,+!p1@MYBL2!1.10!187.37!MYBL2;;chr11:47399947..47399961,-!p3@SPI1!1.09!11.35!SPI1;;chr16:54320646..54320672,-!p2@IRX3!1.07!16.52!IRX3;;chr18:55102628..55102646,+!p2@ONECUT2!1.06!10.51!ONECUT2;;chrY:21906594..21906622,-!p1@KDM5D!1.06!10.51!KDM5D;;chr17:41277372..41277418,-!p1@BRCA1!1.05!37.21!BRCA1;;chr2:175199697..175199706,+!p2@SP9!1.05!10.34!SP9;;chr20:42295713..42295738,+!p2@MYBL2!1.04!59.06!MYBL2;;chr1:167298300..167298319,+!p2@POU2F1!1.04!10.01!POU2F1;;chr2:200322229..200322251,-!p3@SATB2!1.04!9.84!SATB2;;chr17:79881332..79881348,-!p3@MAFG!1.03!14.18!MAFG;;chr16:54320617..54320643,-!p3@IRX3!1.03!12.68!IRX3;;chr17:48072574..48072597,-!p1@DLX3!1.02!9.51!DLX3;;chr7:50344251..50344288,+!p3@IKZF1!1.01!9.18!IKZF1;;chr2:100759037..100759058,-!p2@AFF3!1.00!9.01!AFF3;;chr13:72441074..72441172,-!p2@DACH1!0.99!8.84!DACH1;;chr1:167298384..167298412,+!p3@POU2F1!0.99!8.68!POU2F1;;chr1:40627038..40627071,+!p1@RLF!0.98!113.96!RLF;;chr15:57511609..57511651,+!p2@TCF12!0.98!14.52!TCF12;;chr11:128563948..128564003,+!p1@FLI1!0.97!103.78!FLI1;;chr19:13213662..13213686,-!p1@LYL1!0.96!12.18!LYL1;;chr1:156470494..156470505,-!p3@MEF2D!0.96!12.01!MEF2D;;chr11:47400032..47400043,-!p5@SPI1!0.96!8.18!SPI1;;chr16:54320158..54320200,-!p5@IRX3!0.95!11.68!IRX3;;chr10:135044190..135044229,+!p3@UTF1!0.95!8.01!UTF1;;chr7:27239703..27239715,-!p1@HOXA13!0.95!8.01!HOXA13;;chr9:1050331..1050363,+!p1@DMRT2!0.95!8.01!DMRT2;;chr1:92949505..92949543,-!p5@GFI1!0.95!7.84!GFI1;;chr16:54320675..54320715,-!p1@IRX3!0.93!16.85!IRX3;;chr2:185463247..185463263,+!p1@ZNF804A!0.93!13.51!ZNF804A;;chr3:18467290..18467311,-!p8@SATB1!0.93!7.51!SATB1;;chr16:54320280..54320291,-!p9@IRX3!0.93!7.51!IRX3;;chr1:41157266..41157314,+!p3@NFYC!0.92!64.90!NFYC;;chr7:64838786..64838809,+!p2@ZNF92!0.92!43.21!ZNF92;;chr12:54694758..54694805,-!p1@NFE2!0.92!8.84!NFE2;;chr19:13213954..13214021,-!p4@LYL1!0.92!7.34!LYL1;;chr2:145277882..145277967,-!p3@ZEB2!0.90!12.35!ZEB2;;chr20:21378152..21378169,-!p1@NKX2-4!0.90!7.01!NKX2-4;;chr1:247171347..247171366,-!p2@ZNF695!0.89!12.68!ZNF695;;chrX:66763856..66763896,+!p1@AR!0.89!10.01!AR;;chr19:23299814..23299844,+!p1@ZNF730!0.89!8.34!ZNF730;;chr2:200320768..200320800,-!p4@SATB2!0.89!6.67!SATB2;;chr19:20011744..20011770,+!p1@ZNF93!0.88!26.70!ZNF93;;chr19:22605097..22605121,-!p2@ZNF98!0.88!6.51!ZNF98;;chr19:50922187..50922204,+!p1@SPIB!0.88!6.51!SPIB;;chr21:34442439..34442455,+!p1@OLIG1!0.88!6.51!OLIG1;;chr19:22817119..22817145,+!p1@ZNF492!0.87!11.01!ZNF492;;chr2:145275947..145275981,-!p10@ZEB2!0.87!6.34!ZEB2;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.19!TWIST1;;chr6:45390300..45390335,+!p4@RUNX2!0.86!10.01!RUNX2;;chr16:54320101..54320125,-!p4@IRX3!0.86!9.18!IRX3;;chr16:54320322..54320343,-!p7@IRX3!0.85!6.01!IRX3;;chr2:100759010..100759035,-!p1@AFF3!0.85!6.01!AFF3;;chr21:36421535..36421610,-!p2@RUNX1!0.84!22.52!RUNX1;;chr6:45390269..45390298,+!p5@RUNX2!0.84!10.18!RUNX2;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.84!TBX20;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.84!ZFY;;chr19:22605136..22605154,-!p1@ZNF98!0.84!5.84!ZNF98;;chr12:54694807..54694832,-!p3@NFE2!0.84!5.84!NFE2;;chr13:100623375..100623425,-!p1@ZIC5!0.84!5.84!ZIC5;;chr5:88179017..88179046,-!p2@MEF2C!0.83!24.86!MEF2C;;chr6:144385698..144385742,-!p2@PLAGL1!0.83!7.17!PLAGL1;;chr7:64363638..64363667,+!p1@ZNF273!0.82!30.20!ZNF273;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.82!27.53!TAL1;;chr3:157823517..157823562,-!p1@SHOX2!0.82!6.01!SHOX2;;chr1:167298425..167298440,+!p8@POU2F1!0.82!5.67!POU2F1;;chr5:71803177..71803255,-!p1@ZNF366!0.82!5.67!ZNF366;;chr7:113726226..113726245,+!p3@FOXP2!0.82!5.67!FOXP2;;chr7:27239740..27239759,-!p2@HOXA13!0.82!5.67!HOXA13;;chr11:44331576..44331650,-!p1@ALX4!0.82!5.67!ALX4;;chr11:47400045..47400060,-!p6@SPI1!0.82!5.67!SPI1;;chr13:100634031..100634045,+!p1@ZIC2!0.82!5.67!ZIC2;;chr1:156460402..156460417,-!p22@MEF2D!0.81!5.51!MEF2D;;chr3:71630980..71631110,-!p3@FOXP1!0.80!19.86!FOXP1;;chr19:13213704..13213726,-!p3@LYL1!0.80!7.17!LYL1;;chr1:41157641..41157665,+!p7@NFYC!0.80!7.01!NFYC;;chr18:22804637..22804660,-!p10@ZNF521!0.80!5.34!ZNF521;;chr5:122424918..122424944,+!p1@PRDM6!0.80!5.34!PRDM6;;chr2:200325204..200325243,-!p7@SATB2!0.80!5.34!SATB2;;chr2:200322711..200322722,-!p10@SATB2!0.79!5.17!SATB2;;chr13:41593392..41593403,-!p7@ELF1!0.79!5.17!ELF1;;chr7:114054885..114054910,+!p4@FOXP2!0.79!5.17!FOXP2;;chr9:126774018..126774055,+!p1@LHX2!0.78!5.01!LHX2;;chr1:43148059..43148108,+!p1@YBX1!0.77!342.87!YBX1;;chr1:45805872..45805900,+!p2@TOE1!0.77!12.68!TOE1;;chr1:40367530..40367597,-!p1@MYCL1!0.77!9.34!MYCL1;;chr10:22292591..22292606,-!p2@DNAJC1!0.77!8.34!DNAJC1;;chrY:21906761..21906810,-!p2@KDM5D!0.77!4.84!KDM5D;;chr18:22931979..22931992,-!p3@ZNF521!0.77!4.84!ZNF521;;chr19:3574330..3574393,+!p2@HMG20B!0.77!4.84!HMG20B;;chr2:145275982..145276003,-!p7@ZEB2!0.77!4.84!ZEB2;;chr6:135513595..135513617,+!p4@MYB!0.77!4.84!MYB;;chr19:45971246..45971265,+!p1@FOSB!0.76!97.61!FOSB;;chr1:41157671..41157695,+!p6@NFYC!0.76!7.01!NFYC;;chr1:221052994..221053008,+!p6@HLX!0.76!5.67!HLX;;chr11:19263160..19263176,-!p1@E2F8!0.75!5.51!E2F8;;chr1:40105347..40105358,-!p2@HEYL!0.75!4.67!HEYL;;chr2:60780607..60780624,-!p2@BCL11A!0.74!14.85!BCL11A;;chr1:41204530..41204541,+!p8@NFYC!0.74!5.51!NFYC;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.74!4.50!ZNF469;;chr2:200322259..200322280,-!p5@SATB2!0.74!4.50!SATB2;;chr8:145669791..145669834,-!p1@TONSL!0.73!13.68!TONSL;;chr9:3525727..3525828,-!p2@RFX3!0.73!12.18!RFX3;;chr18:22932004..22932021,-!p2@ZNF521!0.73!4.34!ZNF521;;chr19:21950332..21950356,-!p2@ZNF100!0.72!9.68!ZNF100;;chr6:45390002..45390023,+!p6@RUNX2!0.72!7.84!RUNX2;;chr19:20011731..20011743,+!p3@ZNF93!0.72!5.67!ZNF93;;chr1:221052733..221052749,+!p2@HLX!0.72!5.67!HLX;;chr1:40105299..40105326,-!p1@HEYL!0.71!4.17!HEYL;;chr3:18480173..18480189,-!p6@SATB1!0.71!4.17!SATB1;;chr3:18487057..18487105,-!p4@SATB1!0.71!4.17!SATB1;;chr19:23433144..23433204,-!p1@ZNF724P!0.70!20.19!ZNF724P;;chr1:25256756..25256774,-!p1@RUNX3!0.70!8.18!RUNX3;;chr15:76629123..76629151,+!p1@ISL2!0.70!4.50!ISL2;;chr11:32457103..32457123,-!p3@WT1!0.70!4.00!WT1;;chr5:88120151..88120177,-!p6@MEF2C!0.70!4.00!MEF2C;;chr7:114054864..114054876,+!p11@FOXP2!0.70!4.00!FOXP2;;chr14:75745523..75745537,+!p1@FOS!0.69!537.42!FOS;;chr19:20011775..20011800,+!p2@ZNF93!0.69!7.51!ZNF93;;chrX:66763815..66763854,+!p2@AR!0.69!5.34!AR;;chr19:48774586..48774670,+!p1@ZNF114!0.69!5.01!ZNF114;;chr1:247267618..247267674,-!p1@ZNF669!0.68!34.20!ZNF669;;chr1:227751231..227751273,+!p1@ZNF678!0.68!27.70!ZNF678;;chr9:137217986..137218049,+!p3@RXRA!0.68!12.18!RXRA;;chr6:45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|ffid_belonging_in_development=CL:0000049,CL:0000134
|fonse_cell_line=FF:0101035
|fonse_cell_line=FF:0101035
|fonse_cell_line_closure=FF:0101035
|fonse_cell_line_closure=FF:0101035
Line 37: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg38.nobarcode.ctss.bed.gz
|id=FF:10405-106A9
|id=FF:10405-106A9
|is_a=EFO:0002091;;FF:0000210;;FF:0101370;;FF:0101883
|is_a=EFO:0002091;;FF:0000210;;FF:0101370;;FF:0101883
|is_obsolete=
|is_obsolete=
|library_id=CNhs10724
|library_id_phase_based=2:CNhs10724
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10405
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10405
|name=acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed)
|name=acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed)
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10724,LSID691,release008,COMPLETED
|profile_hcage=CNhs10724,LSID691,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 60: Line 78:
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Line 81: Line 100:
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|top_motifs=MYB:2.63998255195;E2F1..5:1.80906952065;RFX2..5_RFXANK_RFXAP:1.67183807162;NANOG:1.57223595389;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.52789902115;YY1:1.36654014483;NFY{A,B,C}:1.16071914605;RFX1:1.1299253532;PPARG:0.984219501914;NRF1:0.975943117023;DMAP1_NCOR{1,2}_SMARC:0.958658960557;ELK1,4_GABP{A,B1}:0.932791888862;NFIL3:0.896711437498;SPIB:0.887987536515;ELF1,2,4:0.875572859109;SPI1:0.852990434427;FOXA2:0.826095341395;POU5F1:0.702028783683;FOXP3:0.66568524008;PAX8:0.651517848546;NR5A1,2:0.62299320722;CUX2:0.613541862045;ZNF143:0.61279868658;BREu{core}:0.610799142601;AIRE:0.584513825808;NR6A1:0.559347125777;TEF:0.554888304548;STAT1,3:0.528137690202;ETS1,2:0.517404492597;NANOG{mouse}:0.507465360957;ARID5B:0.478556378942;POU2F1..3:0.46930038715;POU1F1:0.466853356703;CDX1,2,4:0.434410616262;EN1,2:0.424024297138;HOX{A6,A7,B6,B7}:0.392526986411;NKX3-2:0.360210893261;RUNX1..3:0.347986368718;NKX2-2,8:0.330938191408;PAX5:0.329146980682;CEBPA,B_DDIT3:0.32428077773;GATA6:0.30834896768;CRX:0.306421151221;PRRX1,2:0.271138266083;HBP1_HMGB_SSRP1_UBTF:0.263500434076;OCT4_SOX2{dimer}:0.261578656529;EP300:0.244588369965;MYOD1:0.236503544566;GCM1,2:0.219847915132;CREB1:0.211856550383;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.206175740226;HLF:0.169807268864;TFDP1:0.166899788817;GFI1:0.153909345566;bHLH_family:0.139826068423;ALX1:0.12134787299;HOX{A4,D4}:0.0601356343346;STAT5{A,B}:0.0586949230915;HOX{A5,B5}:0.0421151750894;HNF4A_NR2F1,2:0.0376955925269;DBP:0.0268031563888;NKX2-3_NKX2-5:0.0217641587194;FOXN1:0.0216441935106;AR:0.0163614635033;HES1:-0.000952374326074;FOXQ1:-0.0153460639999;MTF1:-0.0285894803716;NFE2L1:-0.0288863725854;SOX{8,9,10}:-0.0298771503831;ZNF238:-0.04365685459;IRF1,2:-0.0437942221507;RORA:-0.0447459736189;HNF1A:-0.0607573576838;PRDM1:-0.0614638913297;NFE2L2:-0.0703851533252;SOX17:-0.0786702691378;HIF1A:-0.0935956465229;MYBL2:-0.12540387011;RXRA_VDR{dimer}:-0.127606108368;TGIF1:-0.135778861938;IRF7:-0.147424383613;MEF2{A,B,C,D}:-0.149017389011;ESRRA:-0.157981332864;SRF:-0.161856988765;ATF5_CREB3:-0.164880076524;PBX1:-0.168454084957;PITX1..3:-0.177364616171;TAL1_TCF{3,4,12}:-0.181764974981;KLF4:-0.183470893841;SREBF1,2:-0.186266057486;SOX5:-0.190737459107;HSF1,2:-0.20329124708;PAX2:-0.210534361292;HAND1,2:-0.22190230822;ATF4:-0.224258834478;LEF1_TCF7_TCF7L1,2:-0.233636087754;POU6F1:-0.238918079673;IKZF2:-0.282561905024;FOSL2:-0.296032283198;AHR_ARNT_ARNT2:-0.297491873812;TLX2:-0.298812188281;REST:-0.301345437192;HOXA9_MEIS1:-0.310112046124;NFE2:-0.312451540129;NKX2-1,4:-0.341505933342;ZEB1:-0.346793295441;NFKB1_REL_RELA:-0.350485526277;PAX3,7:-0.355088342432;FOX{F1,F2,J1}:-0.355818575503;VSX1,2:-0.361235072812;NKX3-1:-0.37266930537;FOXP1:-0.391479383088;LMO2:-0.397888436368;XBP1:-0.418917048776;GATA4:-0.420797451609;ZFP161:-0.427036378677;FOXD3:-0.427400635548;TBX4,5:-0.433614304781;RBPJ:-0.435798952412;TOPORS:-0.438317369333;FOS_FOS{B,L1}_JUN{B,D}:-0.439664799942;ATF6:-0.440788534113;ZNF423:-0.451065104492;PDX1:-0.460550998409;PAX6:-0.460610462799;BACH2:-0.477987137834;IKZF1:-0.479823547299;NHLH1,2:-0.494893652047;TFAP2{A,C}:-0.496912248242;LHX3,4:-0.50940747353;FOX{I1,J2}:-0.511398349277;ATF2:-0.530168416802;POU3F1..4:-0.537314529429;TBP:-0.566517122559;MZF1:-0.579991626981;MTE{core}:-0.603037551811;T:-0.609340477878;ESR1:-0.611587900106;TFAP4:-0.611703655889;SNAI1..3:-0.61388494593;PAX4:-0.61511856862;MYFfamily:-0.650786073675;NR1H4:-0.656367978402;ZBTB16:-0.66821221206;NFIX:-0.683419857544;XCPE1{core}:-0.694111017386;RXR{A,B,G}:-0.706344616332;EVI1:-0.707444248024;HMGA1,2:-0.715439980851;MED-1{core}:-0.724824259463;ZNF148:-0.735263956639;MAFB:-0.766176421988;ADNP_IRX_SIX_ZHX:-0.771142907443;GZF1:-0.774836177217;TP53:-0.795334176304;ZNF384:-0.811626853372;FOXM1:-0.843889657838;UFEwm:-0.850649806717;NKX6-1,2:-0.877042988781;HIC1:-0.878765695993;ONECUT1,2:-0.885451396866;ZBTB6:-0.899416815761;PAX1,9:-0.906045550175;GTF2I:-0.915801502779;SPZ1:-0.928697160853;ZIC1..3:-0.958717975306;SOX2:-0.98548510449;STAT2,4,6:-1.00513352076;EGR1..3:-1.01623741481;JUN:-1.02034996198;TLX1..3_NFIC{dimer}:-1.0409378791;TFAP2B:-1.04133508346;TEAD1:-1.04174909318;SP1:-1.06955115389;GTF2A1,2:-1.07898736072;EBF1:-1.08143229755;NR3C1:-1.11565234374;TFCP2:-1.14474183492;HMX1:-1.14796450301;FOXO1,3,4:-1.14949981829;RREB1:-1.15866160343;MAZ:-1.18334155616;GFI1B:-1.24228199739;CDC5L:-1.24520010554;BPTF:-1.25378323696;FOX{D1,D2}:-1.25585976484;FOXL1:-1.26974303879;ALX4:-1.30833233115;GLI1..3:-1.32753243891;NFATC1..3:-1.32772848788;PATZ1:-1.32889904217;SMAD1..7,9:-1.52331595128
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10405-106A9;search_select_hide=table117:FF:10405-106A9
}}
}}

Latest revision as of 13:59, 3 June 2020

Name:acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed)
Species:Human (Homo sapiens)
Library ID:CNhs10724
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage1 year old child
sexmale
age1
cell typemonoblast
cell lineTHP-1
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004824
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10724 CAGE DRX007815 DRR008687
Accession ID Hg19

Library idBAMCTSS
CNhs10724 DRZ000112 DRZ001497
Accession ID Hg38

Library idBAMCTSS
CNhs10724 DRZ011462 DRZ012847
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0746
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.693
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived1.073
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0657
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0368
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.209
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.263
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.358
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.467
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0348
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.067
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.49
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.222
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.125
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.176
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.125
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10724

Jaspar motifP-value
MA0002.20.0907
MA0003.10.879
MA0004.10.2
MA0006.10.176
MA0007.10.505
MA0009.10.0451
MA0014.10.483
MA0017.10.00634
MA0018.20.852
MA0019.10.357
MA0024.12.59928e-9
MA0025.10.00191
MA0027.10.672
MA0028.14.02925e-8
MA0029.10.86
MA0030.10.204
MA0031.10.0275
MA0035.20.924
MA0038.10.212
MA0039.20.662
MA0040.10.206
MA0041.10.358
MA0042.10.145
MA0043.11.11995e-4
MA0046.10.747
MA0047.20.45
MA0048.10.135
MA0050.10.401
MA0051.10.23
MA0052.10.443
MA0055.10.0253
MA0057.10.686
MA0058.10.112
MA0059.10.00645
MA0060.12.35813e-7
MA0061.10.347
MA0062.27.68189e-15
MA0065.20.0368
MA0066.10.691
MA0067.10.166
MA0068.10.866
MA0069.10.298
MA0070.10.894
MA0071.10.14
MA0072.10.434
MA0073.10.621
MA0074.10.222
MA0076.19.5122e-9
MA0077.10.974
MA0078.10.777
MA0079.20.306
MA0080.23.51646e-13
MA0081.11.92152e-4
MA0083.10.793
MA0084.10.268
MA0087.10.169
MA0088.10.00648
MA0090.11.59405e-4
MA0091.10.562
MA0092.10.548
MA0093.10.158
MA0099.28.277e-4
MA0100.11.49792e-7
MA0101.10.247
MA0102.28.95306e-6
MA0103.10.411
MA0104.28.42149e-5
MA0105.10.552
MA0106.10.375
MA0107.10.0137
MA0108.23.37056e-5
MA0111.10.136
MA0112.20.396
MA0113.10.584
MA0114.10.0033
MA0115.10.192
MA0116.10.0029
MA0117.10.533
MA0119.10.644
MA0122.10.714
MA0124.10.592
MA0125.10.995
MA0131.10.00935
MA0135.10.986
MA0136.19.8968e-24
MA0137.20.88
MA0138.20.311
MA0139.10.822
MA0140.10.543
MA0141.10.128
MA0142.10.685
MA0143.10.704
MA0144.10.635
MA0145.10.738
MA0146.10.316
MA0147.17.65313e-5
MA0148.10.345
MA0149.10.58
MA0150.10.125
MA0152.10.442
MA0153.10.323
MA0154.10.781
MA0155.10.0823
MA0156.12.95371e-19
MA0157.10.0748
MA0159.10.73
MA0160.10.289
MA0162.10.395
MA0163.15.42695e-7
MA0164.10.78
MA0258.10.186
MA0259.10.028



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10724

Novel motifP-value
10.129
100.0336
1000.177
1010.292
1020.982
1030.357
1040.655
1050.808
1060.0423
1070.0337
1080.216
1090.0313
110.271
1100.375
1110.635
1120.746
1130.164
1140.496
1150.757
1160.865
1170.0546
1180.128
1190.141
120.695
1200.502
1210.667
1220.161
1230.241
1240.277
1250.624
1260.583
1270.0698
1280.0644
1290.826
130.00159
1300.489
1310.00307
1320.655
1330.332
1340.466
1350.0594
1360.101
1370.182
1380.89
1390.697
140.835
1400.0774
1410.973
1420.584
1430.15
1440.611
1450.427
1460.82
1470.0568
1480.0174
1490.0845
150.467
1500.594
1510.446
1520.0509
1530.47
1540.64
1550.0689
1560.968
1570.449
1580.479
1590.385
160.577
1600.792
1610.134
1620.351
1630.518
1640.502
1650.0138
1660.256
1670.389
1680.873
1690.712
170.391
180.514
190.986
20.112
200.375
210.597
220.866
230.00478
240.0573
250.238
260.941
270.849
280.928
290.0217
30.0625
300.108
310.252
320.0377
330.279
340.406
350.699
360.0463
370.477
380.527
390.123
40.344
400.376
410.745
420.116
430.996
440.821
450.256
460.404
470.0821
480.146
490.973
50.845
500.955
510.88
520.118
530.906
540.418
550.396
560.586
570.497
580.303
590.982
60.248
600.431
610.121
620.498
630.616
640.503
650.411
660.0145
670.856
680.322
690.738
70.111
700.0781
710.153
720.995
730.846
740.93
750.0436
760.337
770.245
780.609
790.198
80.394
800.439
810.65
820.517
830.501
840.538
850.0337
860.763
870.0322
880.406
890.325
90.557
900.0814
910.222
920.0339
930.802
940.95
950.0042
960.758
970.67
980.758
990.146



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10724


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101370 (THP-1 cell sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0102332 (monocytic leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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