FF:10405-106A9: Difference between revisions

Latest revision as of 13:59, 3 June 2020

Name:	acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed)
Species:	Human (Homo sapiens)
Library ID:	CNhs10724
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	1 year old child
sex	male
age	1
cell type	monoblast
cell line	THP-1
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004824

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10724		CAGE		DRX007815		DRR008687

Accession ID Hg19

Library id		BAM		CTSS
CNhs10724		DRZ000112		DRZ001497

Accession ID Hg38

Library id		BAM		CTSS
CNhs10724		DRZ011462		DRZ012847

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0746
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.693
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	1.073
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0657
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0368
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.209
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.263
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.358
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.467
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0348
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.067
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.49
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.222
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.125
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.176
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.125
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10724

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0907
MA0003.1	MA0003.1	0.879
MA0004.1	MA0004.1	0.2
MA0006.1	MA0006.1	0.176
MA0007.1	MA0007.1	0.505
MA0009.1	MA0009.1	0.0451
MA0014.1	MA0014.1	0.483
MA0017.1	MA0017.1	0.00634
MA0018.2	MA0018.2	0.852
MA0019.1	MA0019.1	0.357
MA0024.1	MA0024.1	2.59928e-9
MA0025.1	MA0025.1	0.00191
MA0027.1	MA0027.1	0.672
MA0028.1	MA0028.1	4.02925e-8
MA0029.1	MA0029.1	0.86
MA0030.1	MA0030.1	0.204
MA0031.1	MA0031.1	0.0275
MA0035.2	MA0035.2	0.924
MA0038.1	MA0038.1	0.212
MA0039.2	MA0039.2	0.662
MA0040.1	MA0040.1	0.206
MA0041.1	MA0041.1	0.358
MA0042.1	MA0042.1	0.145
MA0043.1	MA0043.1	1.11995e-4
MA0046.1	MA0046.1	0.747
MA0047.2	MA0047.2	0.45
MA0048.1	MA0048.1	0.135
MA0050.1	MA0050.1	0.401
MA0051.1	MA0051.1	0.23
MA0052.1	MA0052.1	0.443
MA0055.1	MA0055.1	0.0253
MA0057.1	MA0057.1	0.686
MA0058.1	MA0058.1	0.112
MA0059.1	MA0059.1	0.00645
MA0060.1	MA0060.1	2.35813e-7
MA0061.1	MA0061.1	0.347
MA0062.2	MA0062.2	7.68189e-15
MA0065.2	MA0065.2	0.0368
MA0066.1	MA0066.1	0.691
MA0067.1	MA0067.1	0.166
MA0068.1	MA0068.1	0.866
MA0069.1	MA0069.1	0.298
MA0070.1	MA0070.1	0.894
MA0071.1	MA0071.1	0.14
MA0072.1	MA0072.1	0.434
MA0073.1	MA0073.1	0.621
MA0074.1	MA0074.1	0.222
MA0076.1	MA0076.1	9.5122e-9
MA0077.1	MA0077.1	0.974
MA0078.1	MA0078.1	0.777
MA0079.2	MA0079.2	0.306
MA0080.2	MA0080.2	3.51646e-13
MA0081.1	MA0081.1	1.92152e-4
MA0083.1	MA0083.1	0.793
MA0084.1	MA0084.1	0.268
MA0087.1	MA0087.1	0.169
MA0088.1	MA0088.1	0.00648
MA0090.1	MA0090.1	1.59405e-4
MA0091.1	MA0091.1	0.562
MA0092.1	MA0092.1	0.548
MA0093.1	MA0093.1	0.158
MA0099.2	MA0099.2	8.277e-4
MA0100.1	MA0100.1	1.49792e-7
MA0101.1	MA0101.1	0.247
MA0102.2	MA0102.2	8.95306e-6
MA0103.1	MA0103.1	0.411
MA0104.2	MA0104.2	8.42149e-5
MA0105.1	MA0105.1	0.552
MA0106.1	MA0106.1	0.375
MA0107.1	MA0107.1	0.0137
MA0108.2	MA0108.2	3.37056e-5
MA0111.1	MA0111.1	0.136
MA0112.2	MA0112.2	0.396
MA0113.1	MA0113.1	0.584
MA0114.1	MA0114.1	0.0033
MA0115.1	MA0115.1	0.192
MA0116.1	MA0116.1	0.0029
MA0117.1	MA0117.1	0.533
MA0119.1	MA0119.1	0.644
MA0122.1	MA0122.1	0.714
MA0124.1	MA0124.1	0.592
MA0125.1	MA0125.1	0.995
MA0131.1	MA0131.1	0.00935
MA0135.1	MA0135.1	0.986
MA0136.1	MA0136.1	9.8968e-24
MA0137.2	MA0137.2	0.88
MA0138.2	MA0138.2	0.311
MA0139.1	MA0139.1	0.822
MA0140.1	MA0140.1	0.543
MA0141.1	MA0141.1	0.128
MA0142.1	MA0142.1	0.685
MA0143.1	MA0143.1	0.704
MA0144.1	MA0144.1	0.635
MA0145.1	MA0145.1	0.738
MA0146.1	MA0146.1	0.316
MA0147.1	MA0147.1	7.65313e-5
MA0148.1	MA0148.1	0.345
MA0149.1	MA0149.1	0.58
MA0150.1	MA0150.1	0.125
MA0152.1	MA0152.1	0.442
MA0153.1	MA0153.1	0.323
MA0154.1	MA0154.1	0.781
MA0155.1	MA0155.1	0.0823
MA0156.1	MA0156.1	2.95371e-19
MA0157.1	MA0157.1	0.0748
MA0159.1	MA0159.1	0.73
MA0160.1	MA0160.1	0.289
MA0162.1	MA0162.1	0.395
MA0163.1	MA0163.1	5.42695e-7
MA0164.1	MA0164.1	0.78
MA0258.1	MA0258.1	0.186
MA0259.1	MA0259.1	0.028

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10724

Novel motif	Logo	P-value
1	1	0.129
10	10	0.0336
100	100	0.177
101	101	0.292
102	102	0.982
103	103	0.357
104	104	0.655
105	105	0.808
106	106	0.0423
107	107	0.0337
108	108	0.216
109	109	0.0313
11	11	0.271
110	110	0.375
111	111	0.635
112	112	0.746
113	113	0.164
114	114	0.496
115	115	0.757
116	116	0.865
117	117	0.0546
118	118	0.128
119	119	0.141
12	12	0.695
120	120	0.502
121	121	0.667
122	122	0.161
123	123	0.241
124	124	0.277
125	125	0.624
126	126	0.583
127	127	0.0698
128	128	0.0644
129	129	0.826
13	13	0.00159
130	130	0.489
131	131	0.00307
132	132	0.655
133	133	0.332
134	134	0.466
135	135	0.0594
136	136	0.101
137	137	0.182
138	138	0.89
139	139	0.697
14	14	0.835
140	140	0.0774
141	141	0.973
142	142	0.584
143	143	0.15
144	144	0.611
145	145	0.427
146	146	0.82
147	147	0.0568
148	148	0.0174
149	149	0.0845
15	15	0.467
150	150	0.594
151	151	0.446
152	152	0.0509
153	153	0.47
154	154	0.64
155	155	0.0689
156	156	0.968
157	157	0.449
158	158	0.479
159	159	0.385
16	16	0.577
160	160	0.792
161	161	0.134
162	162	0.351
163	163	0.518
164	164	0.502
165	165	0.0138
166	166	0.256
167	167	0.389
168	168	0.873
169	169	0.712
17	17	0.391
18	18	0.514
19	19	0.986
2	2	0.112
20	20	0.375
21	21	0.597
22	22	0.866
23	23	0.00478
24	24	0.0573
25	25	0.238
26	26	0.941
27	27	0.849
28	28	0.928
29	29	0.0217
3	3	0.0625
30	30	0.108
31	31	0.252
32	32	0.0377
33	33	0.279
34	34	0.406
35	35	0.699
36	36	0.0463
37	37	0.477
38	38	0.527
39	39	0.123
4	4	0.344
40	40	0.376
41	41	0.745
42	42	0.116
43	43	0.996
44	44	0.821
45	45	0.256
46	46	0.404
47	47	0.0821
48	48	0.146
49	49	0.973
5	5	0.845
50	50	0.955
51	51	0.88
52	52	0.118
53	53	0.906
54	54	0.418
55	55	0.396
56	56	0.586
57	57	0.497
58	58	0.303
59	59	0.982
6	6	0.248
60	60	0.431
61	61	0.121
62	62	0.498
63	63	0.616
64	64	0.503
65	65	0.411
66	66	0.0145
67	67	0.856
68	68	0.322
69	69	0.738
7	7	0.111
70	70	0.0781
71	71	0.153
72	72	0.995
73	73	0.846
74	74	0.93
75	75	0.0436
76	76	0.337
77	77	0.245
78	78	0.609
79	79	0.198
8	8	0.394
80	80	0.439
81	81	0.65
82	82	0.517
83	83	0.501
84	84	0.538
85	85	0.0337
86	86	0.763
87	87	0.0322
88	88	0.406
89	89	0.325
9	9	0.557
90	90	0.0814
91	91	0.222
92	92	0.0339
93	93	0.802
94	94	0.95
95	95	0.0042
96	96	0.758
97	97	0.67
98	98	0.758
99	99	0.146

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10724

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101370 THP-1 cell sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101370 (THP-1 cell sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0102332 (monocytic leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007710
+|DRA_sample_Accession=CAGE@SAMD00004824
-|accession_numbers=CAGE;DRX007815;DRR008687;DRZ000112;DRZ001497
+|accession_numbers=CAGE;DRX007815;DRR008687;DRZ000112;DRZ001497;DRZ011462;DRZ012847
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.52!330.36!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.28!191.71!SPI1;;chr6:135502501..135502546,+!p1@MYB!2.04!130.64!MYB;;chr2:68592406..68592424,+!p1@PLEK!1.99!96.94!PLEK;;chr9:96717629..96717644,-!p1@BARX1!1.86!70.91!BARX1;;chr12:54778471..54778528,-!p1@ZNF385A!1.86!70.74!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!1.76!56.56!TFEC;;chr6:135502408..135502459,+!p2@MYB!1.72!58.73!MYB;;chr2:63277948..63277974,+!p1@OTX1!1.71!49.72!OTX1;;chr19:33793430..33793447,-!p1@CEBPA!1.69!194.38!CEBPA;;chr3:18486354..18486377,-!p2@SATB1!1.69!58.90!SATB1;;chr1:92951607..92951661,-!p1@GFI1!1.59!38.04!GFI1;;chr13:72441315..72441454,-!p1@DACH1!1.58!71.91!DACH1;;chr1:92949331..92949377,-!p2@GFI1!1.57!36.37!GFI1;;chr2:200322654..200322707,-!p2@SATB2!1.53!47.72!SATB2;;chr10:31288398..31288455,-!p2@ZNF438!1.50!35.87!ZNF438;;chr1:156460436..156460462,-!p7@MEF2D!1.50!30.87!MEF2D;;chr1:41157421..41157482,+!p2@NFYC!1.43!285.98!NFYC;;chr7:50344289..50344323,+!p1@IKZF1!1.43!26.03!IKZF1;;chr1:41157363..41157416,+!p1@NFYC!1.42!460.17!NFYC;;chr7:137620650..137620677,-!p3@CREB3L2!1.42!25.19!CREB3L2;;chr2:175199675..175199688,+!p1@SP9!1.41!24.86!SP9;;chr11:47400062..47400077,-!p2@SPI1!1.41!24.53!SPI1;;chr6:135516877..135516900,+!p5@MYB!1.39!23.36!MYB;;chr5:72744594..72744609,-!p1@FOXD1!1.37!99.11!FOXD1;;chr5:88178983..88179012,-!p1@MEF2C!1.35!160.34!MEF2C;;chr6:85473156..85473210,-!p2@TBX18!1.34!25.53!TBX18;;chr1:40997285..40997352,+!p1@ZNF684!1.33!70.58!ZNF684;;chr1:40942922..40942997,+!p1@ZNF642!1.33!52.39!ZNF642;;chr1:40997363..40997392,+!p2@ZNF684!1.32!25.69!ZNF684;;chr7:27205136..27205164,-!p1@HOXA9!1.32!19.86!HOXA9;;chr7:137620684..137620711,-!p4@CREB3L2!1.32!19.69!CREB3L2;;chr6:34204973..34204990,+!p4@HMGA1!1.29!236.76!HMGA1;;chr7:113726357..113726443,+!p1@FOXP2!1.29!31.87!FOXP2;;chr2:145277640..145277771,-!p1@ZEB2!1.28!235.59!ZEB2;;chr6:135502472..135502489,+!p3@MYB!1.28!18.02!MYB;;chr2:63277978..63277995,+!p2@OTX1!1.27!17.69!OTX1;;chr1:156470515..156470542,-!p2@MEF2D!1.26!87.93!MEF2D;;chr1:3569072..3569093,+!p1@TP73!1.26!17.35!TP73;;chr1:50889103..50889145,-!p1@DMRTA2!1.26!17.02!DMRTA2;;chr18:55102598..55102623,+!p1@ONECUT2!1.25!16.68!ONECUT2;;chr1:247171316..247171336,-!p3@ZNF695!1.24!24.19!ZNF695;;chr7:27205106..27205134,-!p2@HOXA9!1.24!16.52!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!1.24!16.52!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!1.24!16.35!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.23!16.02!HOXA11;;chr11:47399996..47400014,-!p4@SPI1!1.22!15.52!SPI1;;chr18:22932080..22932170,-!p1@ZNF521!1.21!63.40!ZNF521;;chr14:75988771..75988826,+!p1@BATF!1.21!20.36!BATF;;chr6:135516909..135516925,+!p6@MYB!1.21!15.18!MYB;;chr16:54319010..54319041,-!p8@IRX3!1.19!14.52!IRX3;;chr3:18480217..18480239,-!p3@SATB1!1.19!14.35!SATB1;;chr7:50343634..50343717,+!p2@IKZF1!1.18!14.02!IKZF1;;chr3:157824001..157824078,-!p2@SHOX2!1.17!13.85!SHOX2;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!1.16!48.39!ZNF670;;chr7:128577972..128578047,+!p1@IRF5!1.16!21.36!IRF5;;chr18:22805268..22805280,-!p8@ZNF521!1.16!13.35!ZNF521;;chr1:92952473..92952489,-!p3@GFI1!1.15!13.01!GFI1;;chr3:157824202..157824211,-!p3@SHOX2!1.15!13.01!SHOX2;;chr2:68592394..68592405,+!p2@PLEK!1.14!12.68!PLEK;;chr1:156460473..156460486,-!p12@MEF2D!1.14!12.68!MEF2D;;chr10:31288370..31288393,-!p3@ZNF438!1.13!12.51!ZNF438;;chr13:41593425..41593480,-!p1@ELF1!1.11!75.75!ELF1;;chr20:42295745..42295765,+!p1@MYBL2!1.10!187.37!MYBL2;;chr11:47399947..47399961,-!p3@SPI1!1.09!11.35!SPI1;;chr16:54320646..54320672,-!p2@IRX3!1.07!16.52!IRX3;;chr18:55102628..55102646,+!p2@ONECUT2!1.06!10.51!ONECUT2;;chrY:21906594..21906622,-!p1@KDM5D!1.06!10.51!KDM5D;;chr17:41277372..41277418,-!p1@BRCA1!1.05!37.21!BRCA1;;chr2:175199697..175199706,+!p2@SP9!1.05!10.34!SP9;;chr20:42295713..42295738,+!p2@MYBL2!1.04!59.06!MYBL2;;chr1:167298300..167298319,+!p2@POU2F1!1.04!10.01!POU2F1;;chr2:200322229..200322251,-!p3@SATB2!1.04!9.84!SATB2;;chr17:79881332..79881348,-!p3@MAFG!1.03!14.18!MAFG;;chr16:54320617..54320643,-!p3@IRX3!1.03!12.68!IRX3;;chr17:48072574..48072597,-!p1@DLX3!1.02!9.51!DLX3;;chr7:50344251..50344288,+!p3@IKZF1!1.01!9.18!IKZF1;;chr2:100759037..100759058,-!p2@AFF3!1.00!9.01!AFF3;;chr13:72441074..72441172,-!p2@DACH1!0.99!8.84!DACH1;;chr1:167298384..167298412,+!p3@POU2F1!0.99!8.68!POU2F1;;chr1:40627038..40627071,+!p1@RLF!0.98!113.96!RLF;;chr15:57511609..57511651,+!p2@TCF12!0.98!14.52!TCF12;;chr11:128563948..128564003,+!p1@FLI1!0.97!103.78!FLI1;;chr19:13213662..13213686,-!p1@LYL1!0.96!12.18!LYL1;;chr1:156470494..156470505,-!p3@MEF2D!0.96!12.01!MEF2D;;chr11:47400032..47400043,-!p5@SPI1!0.96!8.18!SPI1;;chr16:54320158..54320200,-!p5@IRX3!0.95!11.68!IRX3;;chr10:135044190..135044229,+!p3@UTF1!0.95!8.01!UTF1;;chr7:27239703..27239715,-!p1@HOXA13!0.95!8.01!HOXA13;;chr9:1050331..1050363,+!p1@DMRT2!0.95!8.01!DMRT2;;chr1:92949505..92949543,-!p5@GFI1!0.95!7.84!GFI1;;chr16:54320675..54320715,-!p1@IRX3!0.93!16.85!IRX3;;chr2:185463247..185463263,+!p1@ZNF804A!0.93!13.51!ZNF804A;;chr3:18467290..18467311,-!p8@SATB1!0.93!7.51!SATB1;;chr16:54320280..54320291,-!p9@IRX3!0.93!7.51!IRX3;;chr1:41157266..41157314,+!p3@NFYC!0.92!64.90!NFYC;;chr7:64838786..64838809,+!p2@ZNF92!0.92!43.21!ZNF92;;chr12:54694758..54694805,-!p1@NFE2!0.92!8.84!NFE2;;chr19:13213954..13214021,-!p4@LYL1!0.92!7.34!LYL1;;chr2:145277882..145277967,-!p3@ZEB2!0.90!12.35!ZEB2;;chr20:21378152..21378169,-!p1@NKX2-4!0.90!7.01!NKX2-4;;chr1:247171347..247171366,-!p2@ZNF695!0.89!12.68!ZNF695;;chrX:66763856..66763896,+!p1@AR!0.89!10.01!AR;;chr19:23299814..23299844,+!p1@ZNF730!0.89!8.34!ZNF730;;chr2:200320768..200320800,-!p4@SATB2!0.89!6.67!SATB2;;chr19:20011744..20011770,+!p1@ZNF93!0.88!26.70!ZNF93;;chr19:22605097..22605121,-!p2@ZNF98!0.88!6.51!ZNF98;;chr19:50922187..50922204,+!p1@SPIB!0.88!6.51!SPIB;;chr21:34442439..34442455,+!p1@OLIG1!0.88!6.51!OLIG1;;chr19:22817119..22817145,+!p1@ZNF492!0.87!11.01!ZNF492;;chr2:145275947..145275981,-!p10@ZEB2!0.87!6.34!ZEB2;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.19!TWIST1;;chr6:45390300..45390335,+!p4@RUNX2!0.86!10.01!RUNX2;;chr16:54320101..54320125,-!p4@IRX3!0.86!9.18!IRX3;;chr16:54320322..54320343,-!p7@IRX3!0.85!6.01!IRX3;;chr2:100759010..100759035,-!p1@AFF3!0.85!6.01!AFF3;;chr21:36421535..36421610,-!p2@RUNX1!0.84!22.52!RUNX1;;chr6:45390269..45390298,+!p5@RUNX2!0.84!10.18!RUNX2;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.84!TBX20;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.84!ZFY;;chr19:22605136..22605154,-!p1@ZNF98!0.84!5.84!ZNF98;;chr12:54694807..54694832,-!p3@NFE2!0.84!5.84!NFE2;;chr13:100623375..100623425,-!p1@ZIC5!0.84!5.84!ZIC5;;chr5:88179017..88179046,-!p2@MEF2C!0.83!24.86!MEF2C;;chr6:144385698..144385742,-!p2@PLAGL1!0.83!7.17!PLAGL1;;chr7:64363638..64363667,+!p1@ZNF273!0.82!30.20!ZNF273;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.82!27.53!TAL1;;chr3:157823517..157823562,-!p1@SHOX2!0.82!6.01!SHOX2;;chr1:167298425..167298440,+!p8@POU2F1!0.82!5.67!POU2F1;;chr5:71803177..71803255,-!p1@ZNF366!0.82!5.67!ZNF366;;chr7:113726226..113726245,+!p3@FOXP2!0.82!5.67!FOXP2;;chr7:27239740..27239759,-!p2@HOXA13!0.82!5.67!HOXA13;;chr11:44331576..44331650,-!p1@ALX4!0.82!5.67!ALX4;;chr11:47400045..47400060,-!p6@SPI1!0.82!5.67!SPI1;;chr13:100634031..100634045,+!p1@ZIC2!0.82!5.67!ZIC2;;chr1:156460402..156460417,-!p22@MEF2D!0.81!5.51!MEF2D;;chr3:71630980..71631110,-!p3@FOXP1!0.80!19.86!FOXP1;;chr19:13213704..13213726,-!p3@LYL1!0.80!7.17!LYL1;;chr1:41157641..41157665,+!p7@NFYC!0.80!7.01!NFYC;;chr18:22804637..22804660,-!p10@ZNF521!0.80!5.34!ZNF521;;chr5:122424918..122424944,+!p1@PRDM6!0.80!5.34!PRDM6;;chr2:200325204..200325243,-!p7@SATB2!0.80!5.34!SATB2;;chr2:200322711..200322722,-!p10@SATB2!0.79!5.17!SATB2;;chr13:41593392..41593403,-!p7@ELF1!0.79!5.17!ELF1;;chr7:114054885..114054910,+!p4@FOXP2!0.79!5.17!FOXP2;;chr9:126774018..126774055,+!p1@LHX2!0.78!5.01!LHX2;;chr1:43148059..43148108,+!p1@YBX1!0.77!342.87!YBX1;;chr1:45805872..45805900,+!p2@TOE1!0.77!12.68!TOE1;;chr1:40367530..40367597,-!p1@MYCL1!0.77!9.34!MYCL1;;chr10:22292591..22292606,-!p2@DNAJC1!0.77!8.34!DNAJC1;;chrY:21906761..21906810,-!p2@KDM5D!0.77!4.84!KDM5D;;chr18:22931979..22931992,-!p3@ZNF521!0.77!4.84!ZNF521;;chr19:3574330..3574393,+!p2@HMG20B!0.77!4.84!HMG20B;;chr2:145275982..145276003,-!p7@ZEB2!0.77!4.84!ZEB2;;chr6:135513595..135513617,+!p4@MYB!0.77!4.84!MYB;;chr19:45971246..45971265,+!p1@FOSB!0.76!97.61!FOSB;;chr1:41157671..41157695,+!p6@NFYC!0.76!7.01!NFYC;;chr1:221052994..221053008,+!p6@HLX!0.76!5.67!HLX;;chr11:19263160..19263176,-!p1@E2F8!0.75!5.51!E2F8;;chr1:40105347..40105358,-!p2@HEYL!0.75!4.67!HEYL;;chr2:60780607..60780624,-!p2@BCL11A!0.74!14.85!BCL11A;;chr1:41204530..41204541,+!p8@NFYC!0.74!5.51!NFYC;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.74!4.50!ZNF469;;chr2:200322259..200322280,-!p5@SATB2!0.74!4.50!SATB2;;chr8:145669791..145669834,-!p1@TONSL!0.73!13.68!TONSL;;chr9:3525727..3525828,-!p2@RFX3!0.73!12.18!RFX3;;chr18:22932004..22932021,-!p2@ZNF521!0.73!4.34!ZNF521;;chr19:21950332..21950356,-!p2@ZNF100!0.72!9.68!ZNF100;;chr6:45390002..45390023,+!p6@RUNX2!0.72!7.84!RUNX2;;chr19:20011731..20011743,+!p3@ZNF93!0.72!5.67!ZNF93;;chr1:221052733..221052749,+!p2@HLX!0.72!5.67!HLX;;chr1:40105299..40105326,-!p1@HEYL!0.71!4.17!HEYL;;chr3:18480173..18480189,-!p6@SATB1!0.71!4.17!SATB1;;chr3:18487057..18487105,-!p4@SATB1!0.71!4.17!SATB1;;chr19:23433144..23433204,-!p1@ZNF724P!0.70!20.19!ZNF724P;;chr1:25256756..25256774,-!p1@RUNX3!0.70!8.18!RUNX3;;chr15:76629123..76629151,+!p1@ISL2!0.70!4.50!ISL2;;chr11:32457103..32457123,-!p3@WT1!0.70!4.00!WT1;;chr5:88120151..88120177,-!p6@MEF2C!0.70!4.00!MEF2C;;chr7:114054864..114054876,+!p11@FOXP2!0.70!4.00!FOXP2;;chr14:75745523..75745537,+!p1@FOS!0.69!537.42!FOS;;chr19:20011775..20011800,+!p2@ZNF93!0.69!7.51!ZNF93;;chrX:66763815..66763854,+!p2@AR!0.69!5.34!AR;;chr19:48774586..48774670,+!p1@ZNF114!0.69!5.01!ZNF114;;chr1:247267618..247267674,-!p1@ZNF669!0.68!34.20!ZNF669;;chr1:227751231..227751273,+!p1@ZNF678!0.68!27.70!ZNF678;;chr9:137217986..137218049,+!p3@RXRA!0.68!12.18!RXRA;;chr6:4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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10405-106A9
 |is_a=EFO:0002091;;FF:0000210;;FF:0101370;;FF:0101883
 |is_obsolete=
 |library_id=CNhs10724
+|library_id_phase_based=2:CNhs10724
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10405
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10405
 |name=acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed)
 |namespace=FANTOM5
@@ Line 49: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10724,LSID691,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10405-106A9;search_select_hide=table117:FF:10405-106A9
 }}

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FF:10405-106A9: Difference between revisions

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Latest revision as of 13:59, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0