FF:10426-106D3: Difference between revisions

Latest revision as of 14:01, 3 June 2020

Name:	epidermoid carcinoma cell line:A431
Species:	Human (Homo sapiens)
Library ID:	CNhs10743
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	vulva
dev stage	85 year old adult
sex	female
age	85
cell type	unclassifiable
cell line	A431
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005605

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10743		CAGE		DRX007879		DRR008751

Accession ID Hg19

Library id		BAM		CTSS
CNhs10743		DRZ000176		DRZ001561

Accession ID Hg38

Library id		BAM		CTSS
CNhs10743		DRZ011526		DRZ012911

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.00591
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.545
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0421
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0406
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0.0406
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0681
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.144
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.173
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0406
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.961
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.244
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.04
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-1.175183e-4
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.144
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.112
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00258
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0406
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.423
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0031
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0406
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0409
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10743

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0331
MA0003.1	MA0003.1	0.466
MA0004.1	MA0004.1	0.607
MA0006.1	MA0006.1	0.0998
MA0007.1	MA0007.1	0.196
MA0009.1	MA0009.1	0.227
MA0014.1	MA0014.1	0.0961
MA0017.1	MA0017.1	0.884
MA0018.2	MA0018.2	0.704
MA0019.1	MA0019.1	0.548
MA0024.1	MA0024.1	1.30272e-5
MA0025.1	MA0025.1	0.0102
MA0027.1	MA0027.1	0.971
MA0028.1	MA0028.1	0.222
MA0029.1	MA0029.1	0.545
MA0030.1	MA0030.1	0.00928
MA0031.1	MA0031.1	0.105
MA0035.2	MA0035.2	0.0589
MA0038.1	MA0038.1	0.184
MA0039.2	MA0039.2	2.41552e-4
MA0040.1	MA0040.1	0.179
MA0041.1	MA0041.1	0.849
MA0042.1	MA0042.1	0.953
MA0043.1	MA0043.1	0.505
MA0046.1	MA0046.1	0.267
MA0047.2	MA0047.2	0.105
MA0048.1	MA0048.1	0.251
MA0050.1	MA0050.1	1.22104e-4
MA0051.1	MA0051.1	5.47206e-4
MA0052.1	MA0052.1	0.435
MA0055.1	MA0055.1	5.90627e-5
MA0057.1	MA0057.1	0.185
MA0058.1	MA0058.1	0.199
MA0059.1	MA0059.1	0.184
MA0060.1	MA0060.1	3.73957e-5
MA0061.1	MA0061.1	0.838
MA0062.2	MA0062.2	0.465
MA0065.2	MA0065.2	0.381
MA0066.1	MA0066.1	0.369
MA0067.1	MA0067.1	0.445
MA0068.1	MA0068.1	0.704
MA0069.1	MA0069.1	0.793
MA0070.1	MA0070.1	0.721
MA0071.1	MA0071.1	0.372
MA0072.1	MA0072.1	0.371
MA0073.1	MA0073.1	0.745
MA0074.1	MA0074.1	0.208
MA0076.1	MA0076.1	0.42
MA0077.1	MA0077.1	0.26
MA0078.1	MA0078.1	0.765
MA0079.2	MA0079.2	0.308
MA0080.2	MA0080.2	0.00112
MA0081.1	MA0081.1	0.135
MA0083.1	MA0083.1	0.317
MA0084.1	MA0084.1	0.07
MA0087.1	MA0087.1	0.52
MA0088.1	MA0088.1	0.822
MA0090.1	MA0090.1	0.0392
MA0091.1	MA0091.1	7.81161e-4
MA0092.1	MA0092.1	0.207
MA0093.1	MA0093.1	0.575
MA0099.2	MA0099.2	9.18333e-13
MA0100.1	MA0100.1	0.916
MA0101.1	MA0101.1	0.293
MA0102.2	MA0102.2	0.826
MA0103.1	MA0103.1	2.04008e-7
MA0104.2	MA0104.2	0.671
MA0105.1	MA0105.1	0.0809
MA0106.1	MA0106.1	6.35795e-4
MA0107.1	MA0107.1	0.344
MA0108.2	MA0108.2	0.0398
MA0111.1	MA0111.1	0.627
MA0112.2	MA0112.2	0.489
MA0113.1	MA0113.1	0.66
MA0114.1	MA0114.1	0.408
MA0115.1	MA0115.1	0.581
MA0116.1	MA0116.1	0.298
MA0117.1	MA0117.1	0.439
MA0119.1	MA0119.1	0.803
MA0122.1	MA0122.1	0.87
MA0124.1	MA0124.1	0.682
MA0125.1	MA0125.1	0.0325
MA0131.1	MA0131.1	0.55
MA0135.1	MA0135.1	0.0861
MA0136.1	MA0136.1	0.139
MA0137.2	MA0137.2	0.859
MA0138.2	MA0138.2	0.0336
MA0139.1	MA0139.1	0.973
MA0140.1	MA0140.1	0.485
MA0141.1	MA0141.1	0.116
MA0142.1	MA0142.1	0.0784
MA0143.1	MA0143.1	0.92
MA0144.1	MA0144.1	0.511
MA0145.1	MA0145.1	0.228
MA0146.1	MA0146.1	0.15
MA0147.1	MA0147.1	0.537
MA0148.1	MA0148.1	0.00959
MA0149.1	MA0149.1	0.138
MA0150.1	MA0150.1	0.414
MA0152.1	MA0152.1	0.677
MA0153.1	MA0153.1	0.613
MA0154.1	MA0154.1	0.223
MA0155.1	MA0155.1	0.37
MA0156.1	MA0156.1	0.913
MA0157.1	MA0157.1	0.462
MA0159.1	MA0159.1	0.307
MA0160.1	MA0160.1	0.776
MA0162.1	MA0162.1	0.886
MA0163.1	MA0163.1	0.0588
MA0164.1	MA0164.1	0.591
MA0258.1	MA0258.1	0.28
MA0259.1	MA0259.1	0.69

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10743

Novel motif	Logo	P-value
1	1	0.922
10	10	0.551
100	100	0.665
101	101	0.446
102	102	0.397
103	103	0.423
104	104	0.607
105	105	0.23
106	106	0.891
107	107	0.422
108	108	0.898
109	109	0.00855
11	11	0.305
110	110	0.645
111	111	0.574
112	112	0.482
113	113	0.197
114	114	0.207
115	115	0.846
116	116	0.0476
117	117	0.456
118	118	0.72
119	119	0.309
12	12	0.807
120	120	0.995
121	121	0.399
122	122	0.188
123	123	0.782
124	124	0.0764
125	125	0.34
126	126	0.996
127	127	0.68
128	128	0.288
129	129	0.643
13	13	0.00429
130	130	0.467
131	131	0.588
132	132	0.935
133	133	0.0101
134	134	0.28
135	135	0.0104
136	136	0.0237
137	137	0.127
138	138	0.878
139	139	0.00253
14	14	0.771
140	140	0.0569
141	141	0.912
142	142	0.487
143	143	0.0117
144	144	0.133
145	145	0.863
146	146	0.566
147	147	0.674
148	148	0.258
149	149	0.045
15	15	0.373
150	150	0.251
151	151	0.888
152	152	0.116
153	153	0.873
154	154	0.605
155	155	0.732
156	156	0.802
157	157	0.853
158	158	0.494
159	159	0.836
16	16	0.807
160	160	0.631
161	161	0.95
162	162	0.613
163	163	0.796
164	164	0.997
165	165	0.941
166	166	0.374
167	167	0.572
168	168	0.498
169	169	0.222
17	17	0.372
18	18	0.295
19	19	0.0665
2	2	0.979
20	20	0.189
21	21	0.82
22	22	0.75
23	23	0.538
24	24	0.117
25	25	0.773
26	26	0.673
27	27	0.415
28	28	0.289
29	29	0.587
3	3	0.789
30	30	0.207
31	31	0.16
32	32	0.00151
33	33	0.227
34	34	0.58
35	35	0.00265
36	36	0.984
37	37	0.514
38	38	0.662
39	39	0.694
4	4	0.777
40	40	0.185
41	41	0.131
42	42	0.592
43	43	0.262
44	44	0.652
45	45	0.324
46	46	0.501
47	47	0.689
48	48	0.822
49	49	0.109
5	5	0.349
50	50	0.161
51	51	0.816
52	52	0.305
53	53	0.809
54	54	0.905
55	55	0.852
56	56	0.864
57	57	0.715
58	58	0.881
59	59	0.748
6	6	0.312
60	60	0.352
61	61	0.597
62	62	0.408
63	63	0.589
64	64	0.968
65	65	0.333
66	66	0.0574
67	67	0.713
68	68	0.0401
69	69	0.597
7	7	0.487
70	70	0.571
71	71	0.558
72	72	0.986
73	73	0.161
74	74	0.00309
75	75	0.325
76	76	0.814
77	77	0.826
78	78	0.103
79	79	1.43895e-4
8	8	0.468
80	80	0.167
81	81	0.0249
82	82	0.00232
83	83	0.887
84	84	0.962
85	85	0.0607
86	86	0.432
87	87	0.025
88	88	0.841
89	89	0.564
9	9	0.353
90	90	0.0478
91	91	0.0307
92	92	0.113
93	93	0.663
94	94	0.0433
95	95	0.106
96	96	0.114
97	97	0.655
98	98	0.144
99	99	0.345

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10743

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100017 A-431 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000997 (mammalian vulva)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0005056 (external female genitalia)
0010317 (germ layer / neural crest derived structure)
0004176 (external genitalia)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100017 (A-431 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005605
+|accession_numbers=CAGE;DRX007879;DRR008751;DRZ000176;DRZ001561;DRZ011526;DRZ012911
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000997,UBERON:0003134,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0005056,UBERON:0010317,UBERON:0004176,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.30!198.14!EHF;;chr1:201979743..201979762,+!p1@ELF3!2.25!175.11!ELF3;;chr3:189507432..189507459,+!p1@TP63!2.22!165.90!TP63;;chr1:209979467..209979494,-!p1@IRF6!2.16!160.61!IRF6;;chr17:7493405..7493419,-!p1@SOX15!2.01!100.34!SOX15;;chr8:10588010..10588030,-!p1@SOX7!1.97!92.31!SOX7;;chr1:209979411..209979433,-!p2@IRF6!1.94!85.55!IRF6;;chr11:65554528..65554546,+!p1@OVOL1!1.93!84.37!OVOL1;;chr6:1312325..1312340,+!p1@FOXQ1!1.87!116.51!FOXQ1;;chr17:80797886..80797906,-!p1@ZNF750!1.85!70.06!ZNF750;;chr6:126240380..126240430,+!p2@NCOA7!1.80!155.61!NCOA7;;chr14:37131058..37131139,+!p1@PAX9!1.80!62.42!PAX9;;chr2:176969228..176969260,+!p1@HOXD11!1.77!57.33!HOXD11;;chr1:201979703..201979721,+!p2@ELF3!1.75!55.07!ELF3;;chr6:126240442..126240459,+!p4@NCOA7!1.73!67.12!NCOA7;;chr6:10415276..10415341,-!p2@TFAP2A!1.68!56.54!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!1.64!433.52!KLF5;;chr6:10415484..10415508,-!p3@TFAP2A!1.62!40.47!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.61!44.88!BNC1;;chr8:102504651..102504683,+!p1@GRHL2!1.61!39.69!GRHL2;;chr11:65554563..65554576,+!p2@OVOL1!1.60!39.10!OVOL1;;chr5:134369905..134369972,-!p1@PITX1!1.57!54.19!PITX1;;chr1:6479968..6479986,-!p1@HES2!1.49!30.08!HES2;;chr5:134369879..134369898,-!p2@PITX1!1.49!29.89!PITX1;;chr14:38064429..38064486,-!p1@FOXA1!1.47!28.61!FOXA1;;chr6:126240463..126240489,+!p6@NCOA7!1.45!30.18!NCOA7;;chr2:176969179..176969226,+!p2@HOXD11!1.43!25.67!HOXD11;;chr19:45971246..45971265,+!p1@FOSB!1.42!447.14!FOSB;;chr7:27205106..27205134,-!p2@HOXA9!1.42!25.58!HOXA9;;chr17:7492684..7492778,-!p2@SOX15!1.40!49.88!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.37!33.81!ZNF385A;;chr20:55204351..55204377,+!p1@TFAP2C!1.37!28.61!TFAP2C;;chr12:52445218..52445237,+!p1@NR4A1!1.36!266.83!NR4A1;;chr15:101069113..101069169,-!p1@CERS3!1.36!21.66!CERS3;;chr8:22550982..22550999,-!p1@EGR3!1.35!58.99!EGR3;;chr11:34642656..34642667,+!p2@EHF!1.35!21.56!EHF;;chr5:2751762..2751784,-!p1@IRX2!1.33!20.28!IRX2;;chr3:189507460..189507471,+!p3@TP63!1.27!17.64!TP63;;chr6:10412600..10412637,-!p1@TFAP2A!1.26!28.71!TFAP2A;;chr17:46687959..46688007,-!p2@HOXB7!1.26!23.62!HOXB7;;chr19:45908292..45908374,-!p1@PPP1R13L!1.25!145.42!PPP1R13L;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.85!ZBED1;;chr7:27205136..27205164,-!p1@HOXA9!1.21!15.29!HOXA9;;chr11:65667884..65667895,-!p2@FOSL1!1.19!56.25!FOSL1;;chr12:54785054..54785072,-!p4@ZNF385A!1.19!16.36!ZNF385A;;chr6:10419768..10419819,-!p6@TFAP2A!1.19!14.40!TFAP2A;;chr17:17726907..17726958,-!p2@SREBF1!1.17!84.37!SREBF1;;chr11:34645791..34645836,+!p3@EHF!1.16!13.42!EHF;;chr8:102504979..102505010,+!p2@GRHL2!1.14!12.93!GRHL2;;chr19:48773337..48773339,+!p2@ZNF114!1.14!12.74!ZNF114;;chr15:67418119..67418162,+!p5@SMAD3!1.11!13.33!SMAD3;;chr6:126240356..126240379,+!p7@NCOA7!1.10!14.11!NCOA7;;chr8:102504690..102504704,+!p3@GRHL2!1.09!11.37!GRHL2;;chr11:129245526..129245553,+!p1@BARX2!1.09!11.17!BARX2;;chr2:70142232..70142251,+!p1@MXD1!1.08!62.23!MXD1;;chr1:158979872..158979898,+!p3@IFI16!1.07!33.61!IFI16;;chr11:65667846..65667868,-!p1@FOSL1!1.06!278.20!FOSL1;;chr7:101917447..101917479,+!p4@CUX1!1.05!10.19!CUX1;;chr12:27485762..27485776,+!p3@ARNTL2!1.04!27.24!ARNTL2;;chr17:38256799..38256815,-!p3@NR1D1!1.04!18.42!NR1D1;;chr18:19749541..19749557,+!p1@GATA6!1.03!30.97!GATA6;;chr11:65668011..65668020,-!p3@FOSL1!1.02!9.41!FOSL1;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.98!MECOM;;chr3:111314186..111314204,-!p1@ZBED2!1.00!9.11!ZBED2;;chr20:50721803..50721857,-!p2@ZFP64!0.97!13.33!ZFP64;;chr6:10413188..10413249,-!p7@TFAP2A!0.96!8.04!TFAP2A;;chr8:71157595..71157616,-!p13@NCOA2!0.96!8.04!NCOA2;;chr2:172967621..172967637,-!p1@DLX2!0.95!21.85!DLX2;;chr14:75745523..75745537,+!p1@FOS!0.94!959.05!FOS;;chr15:83953373..83953386,-!p2@BNC1!0.94!7.74!BNC1;;chr1:209979375..209979386,-!p4@IRF6!0.94!7.74!IRF6;;chr5:137804405..137804444,+!p3@EGR1!0.93!9.02!EGR1;;chr3:193853927..193853944,+!p1@HES1!0.92!247.33!HES1;;chr17:70117153..70117174,+!p1@SOX9!0.92!79.18!SOX9;;chr15:67418047..67418093,+!p4@SMAD3!0.92!9.41!SMAD3;;chr1:209979449..209979460,-!p3@IRF6!0.92!7.35!IRF6;;chr2:157189180..157189290,-!p1@NR4A2!0.91!38.41!NR4A2;;chr11:61520075..61520136,+!p1@C11orf9!0.91!15.58!C11orf9;;chr17:48072574..48072597,-!p1@DLX3!0.91!7.06!DLX3;;chr17:38256822..38256851,-!p1@NR1D1!0.90!56.93!NR1D1;;chr18:19749386..19749404,+!p2@GATA6!0.90!10.09!GATA6;;chr20:55205825..55205847,+!p2@TFAP2C!0.90!6.96!TFAP2C;;chr1:24645832..24645853,+!p1@GRHL3!0.90!6.86!GRHL3;;chr9:110252035..110252057,-!p1@KLF4!0.89!115.14!KLF4;;chr14:37051798..37051831,-!p1@NKX2-8!0.89!6.76!NKX2-8;;chr5:137801160..137801176,+!p1@EGR1!0.88!685.26!EGR1;;chr6:1389789..1389821,+!p1@FOXF2!0.87!9.11!FOXF2;;chr6:10412576..10412599,-!p5@TFAP2A!0.87!6.37!TFAP2A;;chr2:10091815..10091864,+!p1@GRHL1!0.86!8.53!GRHL1;;chr10:48355030..48355090,+!p1@ZNF488!0.86!8.13!ZNF488;;chr17:80797863..80797874,-!p2@ZNF750!0.86!6.27!ZNF750;;chr6:28321971..28321995,-!p1@ZNF323!0.86!6.17!ZNF323;;chrX:10701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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epidermoid%2520carcinoma%2520cell%2520line%253aA431.CNhs10743.10426-106D3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epidermoid%2520carcinoma%2520cell%2520line%253aA431.CNhs10743.10426-106D3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epidermoid%2520carcinoma%2520cell%2520line%253aA431.CNhs10743.10426-106D3.hg38.nobarcode.bam
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 |id=FF:10426-106D3
 |is_a=EFO:0002091;;FF:0000210;;FF:0100017
 |is_obsolete=
+|library_id=CNhs10743
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+|microRNAs=
+|microRNAs_nn=
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10426
 |name=epidermoid carcinoma cell line:A431
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
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-|profile_rnaseq=,,,
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@@ Line 63: / Line 78: @@
 |rna_weight_ug=57.988
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 |sample_cell_catalog=RCB1872
 |sample_cell_line=A431
@@ Line 84: / Line 100: @@
 |top_motifs=SNAI1..3:1.85527433538;ZEB1:1.74254348003;TBX4,5:1.69212043202;VSX1,2:1.5418234101;TFDP1:1.41410643605;TP53:1.39041472974;ZNF148:1.36352010666;NKX2-3_NKX2-5:1.28396798883;RBPJ:1.2670376809;SP1:1.1638753479;PITX1..3:1.15220608505;IRF7:1.14037271817;NKX2-1,4:1.1130303964;E2F1..5:1.08138405598;POU2F1..3:0.989697279776;ADNP_IRX_SIX_ZHX:0.96694214988;GLI1..3:0.925620185079;FOXN1:0.841328594167;XCPE1{core}:0.838050289909;MYOD1:0.825258239863;POU1F1:0.813692444508;FOS_FOS{B,L1}_JUN{B,D}:0.741329530698;CEBPA,B_DDIT3:0.692430441168;TFCP2:0.672781868457;TBP:0.646273104715;NFY{A,B,C}:0.634867332438;FOXQ1:0.622121387118;FOX{I1,J2}:0.620629622563;ONECUT1,2:0.559410496516;TEAD1:0.555484285;NFE2:0.543305103323;NFIL3:0.520030230519;HSF1,2:0.51317997753;FOX{F1,F2,J1}:0.506985184652;TFAP2{A,C}:0.481351798695;BACH2:0.462411802165;POU5F1:0.408607145104;OCT4_SOX2{dimer}:0.408260491508;IKZF1:0.402554221137;ELK1,4_GABP{A,B1}:0.385708531684;FOSL2:0.371758984305;FOXA2:0.367838335865;FOXP1:0.36403996072;bHLH_family:0.349526736904;PPARG:0.348349944277;HOX{A5,B5}:0.326706261257;POU6F1:0.312854430885;MAZ:0.307960106543;STAT5{A,B}:0.304844055773;CDC5L:0.303200783591;ZNF143:0.302860721686;HOX{A6,A7,B6,B7}:0.289507312226;SOX17:0.279206584993;TLX2:0.273703583852;NANOG:0.253611550229;PAX8:0.24337422701;FOXL1:0.239981666081;NR6A1:0.229662716543;MED-1{core}:0.227060301415;ATF5_CREB3:0.216440026952;MYB:0.209823578848;HAND1,2:0.189344173148;HIF1A:0.183457901705;ARID5B:0.183073287362;NKX6-1,2:0.149576064738;NR5A1,2:0.145667247169;ZNF423:0.115012945136;EN1,2:0.108168428602;PAX2:0.090743608584;PAX1,9:0.0866342594881;IRF1,2:0.0676918144675;NFKB1_REL_RELA:0.0613917332169;CRX:0.0550505698076;RFX2..5_RFXANK_RFXAP:0.0505375898033;FOX{D1,D2}:0.0478534660634;PDX1:0.0417954239831;HLF:0.0292829530956;NRF1:0.0276566272016;RFX1:0.0271254203194;TLX1..3_NFIC{dimer}:0.017906806445;YY1:0.00136843578372;PBX1:-0.00762038446172;T:-0.0157101894292;GFI1B:-0.0285011409774;TFAP2B:-0.0307600387294;ELF1,2,4:-0.0365622721678;POU3F1..4:-0.0379332688208;GFI1:-0.0607230102808;HOXA9_MEIS1:-0.0623559886993;HNF4A_NR2F1,2:-0.0808005015115;MTF1:-0.0984532183735;BREu{core}:-0.100061169763;HOX{A4,D4}:-0.100865118726;PAX4:-0.108868024801;SRF:-0.109141259238;MTE{core}:-0.110265546741;AR:-0.114424230856;PAX3,7:-0.119452343605;FOXM1:-0.128664934396;SOX2:-0.138112722046;RREB1:-0.138585060395;EGR1..3:-0.139337150356;ATF4:-0.140156800345;SOX{8,9,10}:-0.14449362172;TOPORS:-0.150154091417;ATF2:-0.153724647156;NFIX:-0.161397776167;FOXO1,3,4:-0.191390515142;STAT2,4,6:-0.193404862021;LMO2:-0.21350502922;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.215557366323;GATA6:-0.226682495152;HNF1A:-0.2392222906;HBP1_HMGB_SSRP1_UBTF:-0.241138807469;EBF1:-0.254857067544;ZBTB6:-0.262422975517;TEF:-0.271016477073;JUN:-0.274354994513;MEF2{A,B,C,D}:-0.275807693751;NKX2-2,8:-0.276826662245;LEF1_TCF7_TCF7L1,2:-0.280900274867;GTF2A1,2:-0.289605925114;GTF2I:-0.294157280165;BPTF:-0.295196622101;ZNF384:-0.297425182796;PAX6:-0.324415415162;NFE2L2:-0.334119887165;NKX3-2:-0.357580610505;ZFP161:-0.35795699032;ALX4:-0.364503597545;AHR_ARNT_ARNT2:-0.368520519573;DBP:-0.369400791635;SPIB:-0.37431783061;HIC1:-0.374449967135;CUX2:-0.432760023942;MYBL2:-0.445342262707;SPI1:-0.448040892295;EP300:-0.448928062556;KLF4:-0.456541529892;DMAP1_NCOR{1,2}_SMARC:-0.458271256712;FOXD3:-0.459961113575;CREB1:-0.462613973419;HES1:-0.4682983199;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.473172552406;ETS1,2:-0.491229310075;GZF1:-0.494078909084;ZIC1..3:-0.524600700457;LHX3,4:-0.547695142977;PRRX1,2:-0.554980923643;SOX5:-0.566761222987;MAFB:-0.576802939544;ESRRA:-0.592241778141;CDX1,2,4:-0.6015929;RUNX1..3:-0.618129575305;SMAD1..7,9:-0.642385473127;NKX3-1:-0.659649164236;ZBTB16:-0.660166917021;PRDM1:-0.672699679838;UFEwm:-0.684483465822;NR3C1:-0.706399759054;AIRE:-0.75466182762;NHLH1,2:-0.76947065259;PATZ1:-0.775304339014;FOXP3:-0.787788669285;ZNF238:-0.788479193163;GATA4:-0.789945032388;HMGA1,2:-0.816425237179;RORA:-0.841485739428;REST:-0.841966461012;TAL1_TCF{3,4,12}:-0.863495269237;EVI1:-0.867170482893;SREBF1,2:-0.874704652322;GCM1,2:-0.892939481628;MZF1:-0.893821162241;MYFfamily:-0.903218034422;NR1H4:-0.926552165473;ESR1:-0.94294693694;PAX5:-0.945944937453;TGIF1:-0.956779472654;XBP1:-0.982738338379;ATF6:-0.989980919965;IKZF2:-1.01766893072;NFATC1..3:-1.05009605359;SPZ1:-1.10747780386;TFAP4:-1.11485045485;ALX1:-1.1389617956;RXR{A,B,G}:-1.22198802286;RXRA_VDR{dimer}:-1.26263588443;STAT1,3:-1.30576657873;NANOG{mouse}:-1.35913719189;NFE2L1:-1.38922448718;HMX1:-1.71332960494
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10426-106D3;search_select_hide=table117:FF:10426-106D3
 }}

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FF:10426-106D3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:01, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0