FF:10428-106D5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005691 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548 | |accession_numbers=CAGE;DRX007826;DRR008698;DRZ000123;DRZ001508;DRZ011473;DRZ012858 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002046,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002530,UBERON:0010317,UBERON:0000949 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0103209,FF:0101610,FF:0100919 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.37!233.19!PAX8;;chr15:83953397..83953425,-!p1@BNC1!1.75!63.22!BNC1;;chr14:61116183..61116208,-!p1@SIX1!1.66!163.62!SIX1;;chr10:28034739..28034756,-!p1@MKX!1.56!35.40!MKX;;chr18:19749541..19749557,+!p1@GATA6!1.34!64.11!GATA6;;chr11:31832658..31832681,-!p1@PAX6!1.29!18.37!PAX6;;chr6:10412392..10412409,-!p4@TFAP2A!1.28!20.81!TFAP2A;;chr9:77112244..77112262,+!p1@RORB!1.26!19.15!RORB;;chr20:42543441..42543497,+!p1@TOX2!1.24!72.46!TOX2;;chr2:185463247..185463263,+!p1@ZNF804A!1.16!23.93!ZNF804A;;chr6:34204672..34204692,+!p1@HMGA1!1.11!1339.71!HMGA1;;chr20:42543506..42543549,+!p2@TOX2!1.11!28.72!TOX2;;chr6:34204921..34204939,+!p3@HMGA1!1.08!332.15!HMGA1;;chr2:172967621..172967637,-!p1@DLX2!1.06!28.72!DLX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.05!37.51!BHLHE41;;chr6:45390002..45390023,+!p6@RUNX2!1.03!16.92!RUNX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.00!15.03!TFAP2A;;chr20:6748325..6748352,+!p1@BMP2!1.00!13.25!BMP2;;chr3:157823517..157823562,-!p1@SHOX2!1.00!9.80!SHOX2;;chr12:26277817..26277863,-!p2@BHLHE41!0.99!11.91!BHLHE41;;chr3:141087339..141087387,+!p2@ZBTB38!0.97!87.93!ZBTB38;;chr6:1610293..1610310,+!p1@FOXC1!0.97!14.14!FOXC1;;chr6:28321971..28321995,-!p1@ZNF323!0.97!8.35!ZNF323;;chr9:14314131..14314147,-!p2@NFIB!0.96!46.64!NFIB;;chr10:8096631..8096660,+!p1@GATA3!0.96!9.80!GATA3;;chr6:45390025..45390076,+!p2@RUNX2!0.95!19.59!RUNX2;;chr20:50179368..50179392,-!p2@NFATC2!0.95!10.46!NFATC2;;chr14:61116168..61116180,-!p2@SIX1!0.95!9.02!SIX1;;chr11:34642612..34642646,+!p1@EHF!0.95!8.01!EHF;;chr20:50721803..50721857,-!p2@ZFP64!0.94!12.36!ZFP64;;chr8:55370487..55370503,+!p1@SOX17!0.94!7.79!SOX17;;chr3:141087393..141087426,+!p3@ZBTB38!0.93!30.61!ZBTB38;;chr9:14314566..14314618,-!p1@NFIB!0.91!90.27!NFIB;;chr12:66218598..66218645,+!p2@HMGA2!0.91!34.06!HMGA2;;chr6:45390300..45390335,+!p4@RUNX2!0.91!11.24!RUNX2;;chr6:28321909..28321965,-!p3@ZNF323!0.91!7.12!ZNF323;;chr9:100615499..100615519,+!p1@FOXE1!0.91!7.12!FOXE1;;chr9:77112225..77112238,+!p2@RORB!0.89!6.79!RORB;;chr15:83953373..83953386,-!p2@BNC1!0.89!6.68!BNC1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.88!86.26!ZC3H12A;;chr19:45252008..45252024,+!p2@BCL3!0.88!22.48!BCL3;;chr6:45389835..45389861,+!p7@RUNX2!0.88!10.91!RUNX2;;chr20:39317868..39317884,-!p1@MAFB!0.87!80.14!MAFB;;chr11:65667884..65667895,-!p2@FOSL1!0.86!25.49!FOSL1;;chr17:41622765..41622821,-!p2@ETV4!0.86!9.68!ETV4;;chr2:200323414..200323455,-!p1@SATB2!0.85!13.69!SATB2;;chr2:101436564..101436647,+!p1@NPAS2!0.84!129.01!NPAS2;;chr20:2673383..2673441,+!p1@EBF4!0.84!9.68!EBF4;;chr22:38598086..38598105,+!p1@MAFF!0.83!65.23!MAFF;;chr6:1312325..1312340,+!p1@FOXQ1!0.83!9.68!FOXQ1;;chr18:19749386..19749404,+!p2@GATA6!0.81!8.01!GATA6;;chr11:65667846..65667868,-!p1@FOSL1!0.80!151.49!FOSL1;;chr2:178128149..178128198,-!p2@NFE2L2!0.80!30.61!NFE2L2;;chr9:14082760..14082775,-!p6@NFIB!0.80!9.02!NFIB;;chr9:4299959..4299974,-!p4@GLIS3!0.80!8.68!GLIS3;;chr2:200322654..200322707,-!p2@SATB2!0.80!8.01!SATB2;;chr9:73029219..73029289,-!p2@KLF9!0.79!16.70!KLF9;;chr6:45390269..45390298,+!p5@RUNX2!0.79!8.90!RUNX2;;chr12:66218836..66218888,+!p1@HMGA2!0.78!50.76!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.78!17.59!TWIST2;;chr22:39916558..39916579,+!p1@ATF4!0.77!1554.87!ATF4;;chr19:45971246..45971265,+!p1@FOSB!0.77!100.40!FOSB;;chr9:14083467..14083483,-!p4@NFIB!0.77!13.02!NFIB;;chr9:14313893..14313908,-!p7@NFIB!0.76!7.01!NFIB;;chr10:8096772..8096787,+!p2@GATA3!0.76!5.79!GATA3;;chr3:101568349..101568365,+!p1@NFKBIZ!0.75!269.14!NFKBIZ;;chr12:26277929..26277955,-!p3@BHLHE41!0.75!6.79!BHLHE41;;chr1:201979703..201979721,+!p2@ELF3!0.75!4.67!ELF3;;chr19:42636586..42636607,-!p1@POU2F2!0.74!13.58!POU2F2;;chr2:192015701..192015743,-!p1@STAT4!0.74!6.34!STAT4;;chr20:48807351..48807384,+!p1@CEBPB!0.73!507.12!CEBPB;;chr19:45908292..45908374,-!p1@PPP1R13L!0.73!43.63!PPP1R13L;;chr7:28448965..28448994,+!p2@CREB5!0.73!16.81!CREB5;;chr6:45389791..45389832,+!p3@RUNX2!0.73!12.13!RUNX2;;chr1:59249645..59249656,-!p4@JUN!0.73!11.91!JUN;;chr5:150284532..150284549,-!p1@ZNF300!0.73!9.68!ZNF300;;chr13:72441315..72441454,-!p1@DACH1!0.73!9.46!DACH1;;chr8:80679993..80680011,-!p1@HEY1!0.73!6.57!HEY1;;chr12:66218003..66218018,+!p9@HMGA2!0.73!5.45!HMGA2;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.34!ETV4;;chr9:102584128..102584144,+!p3@NR4A3!0.72!8.57!NR4A3;;chr9:102584159..102584174,+!p2@NR4A3!0.72!8.24!NR4A3;;chr10:28035133..28035148,-!p3@MKX!0.72!4.23!MKX;;chr2:46524537..46524553,+!p1@EPAS1!0.71!466.38!EPAS1;;chr17:46126136..46126152,+!p1@NFE2L1!0.71!241.21!NFE2L1;;chr20:306489..306564,+!p1@SOX12!0.71!50.53!SOX12;;chr2:157189180..157189290,-!p1@NR4A2!0.71!24.38!NR4A2;;chr3:114343768..114343822,-!p1@ZBTB20!0.71!20.26!ZBTB20;;chr14:73360799..73360817,-!p1@DPF3!0.71!15.92!DPF3;;chr7:19157248..19157268,-!p1@TWIST1!0.71!12.47!TWIST1;;chr6:85473156..85473210,-!p2@TBX18!0.71!5.23!TBX18;;chr5:137801160..137801176,+!p1@EGR1!0.70!458.81!EGR1;;chr18:3450161..3450183,+!p1@TGIF1!0.70!155.61!TGIF1;;chr8:57123815..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| |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.37!233.19!PAX8;;chr15:83953397..83953425,-!p1@BNC1!1.75!63.22!BNC1;;chr14:61116183..61116208,-!p1@SIX1!1.66!163.62!SIX1;;chr10:28034739..28034756,-!p1@MKX!1.56!35.40!MKX;;chr18:19749541..19749557,+!p1@GATA6!1.34!64.11!GATA6;;chr11:31832658..31832681,-!p1@PAX6!1.29!18.37!PAX6;;chr6:10412392..10412409,-!p4@TFAP2A!1.28!20.81!TFAP2A;;chr9:77112244..77112262,+!p1@RORB!1.26!19.15!RORB;;chr20:42543441..42543497,+!p1@TOX2!1.24!72.46!TOX2;;chr2:185463247..185463263,+!p1@ZNF804A!1.16!23.93!ZNF804A;;chr6:34204672..34204692,+!p1@HMGA1!1.11!1339.71!HMGA1;;chr20:42543506..42543549,+!p2@TOX2!1.11!28.72!TOX2;;chr6:34204921..34204939,+!p3@HMGA1!1.08!332.15!HMGA1;;chr2:172967621..172967637,-!p1@DLX2!1.06!28.72!DLX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.05!37.51!BHLHE41;;chr6:45390002..45390023,+!p6@RUNX2!1.03!16.92!RUNX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.00!15.03!TFAP2A;;chr20:6748325..6748352,+!p1@BMP2!1.00!13.25!BMP2;;chr3:157823517..157823562,-!p1@SHOX2!1.00!9.80!SHOX2;;chr12:26277817..26277863,-!p2@BHLHE41!0.99!11.91!BHLHE41;;chr3:141087339..141087387,+!p2@ZBTB38!0.97!87.93!ZBTB38;;chr6:1610293..1610310,+!p1@FOXC1!0.97!14.14!FOXC1;;chr6:28321971..28321995,-!p1@ZNF323!0.97!8.35!ZNF323;;chr9:14314131..14314147,-!p2@NFIB!0.96!46.64!NFIB;;chr10:8096631..8096660,+!p1@GATA3!0.96!9.80!GATA3;;chr6:45390025..45390076,+!p2@RUNX2!0.95!19.59!RUNX2;;chr20:50179368..50179392,-!p2@NFATC2!0.95!10.46!NFATC2;;chr14:61116168..61116180,-!p2@SIX1!0.95!9.02!SIX1;;chr11:34642612..34642646,+!p1@EHF!0.95!8.01!EHF;;chr20:50721803..50721857,-!p2@ZFP64!0.94!12.36!ZFP64;;chr8:55370487..55370503,+!p1@SOX17!0.94!7.79!SOX17;;chr3:141087393..141087426,+!p3@ZBTB38!0.93!30.61!ZBTB38;;chr9:14314566..14314618,-!p1@NFIB!0.91!90.27!NFIB;;chr12:66218598..66218645,+!p2@HMGA2!0.91!34.06!HMGA2;;chr6:45390300..45390335,+!p4@RUNX2!0.91!11.24!RUNX2;;chr6:28321909..28321965,-!p3@ZNF323!0.91!7.12!ZNF323;;chr9:100615499..100615519,+!p1@FOXE1!0.91!7.12!FOXE1;;chr9:77112225..77112238,+!p2@RORB!0.89!6.79!RORB;;chr15:83953373..83953386,-!p2@BNC1!0.89!6.68!BNC1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.88!86.26!ZC3H12A;;chr19:45252008..45252024,+!p2@BCL3!0.88!22.48!BCL3;;chr6:45389835..45389861,+!p7@RUNX2!0.88!10.91!RUNX2;;chr20:39317868..39317884,-!p1@MAFB!0.87!80.14!MAFB;;chr11:65667884..65667895,-!p2@FOSL1!0.86!25.49!FOSL1;;chr17:41622765..41622821,-!p2@ETV4!0.86!9.68!ETV4;;chr2:200323414..200323455,-!p1@SATB2!0.85!13.69!SATB2;;chr2:101436564..101436647,+!p1@NPAS2!0.84!129.01!NPAS2;;chr20:2673383..2673441,+!p1@EBF4!0.84!9.68!EBF4;;chr22:38598086..38598105,+!p1@MAFF!0.83!65.23!MAFF;;chr6:1312325..1312340,+!p1@FOXQ1!0.83!9.68!FOXQ1;;chr18:19749386..19749404,+!p2@GATA6!0.81!8.01!GATA6;;chr11:65667846..65667868,-!p1@FOSL1!0.80!151.49!FOSL1;;chr2:178128149..178128198,-!p2@NFE2L2!0.80!30.61!NFE2L2;;chr9:14082760..14082775,-!p6@NFIB!0.80!9.02!NFIB;;chr9:4299959..4299974,-!p4@GLIS3!0.80!8.68!GLIS3;;chr2:200322654..200322707,-!p2@SATB2!0.80!8.01!SATB2;;chr9:73029219..73029289,-!p2@KLF9!0.79!16.70!KLF9;;chr6:45390269..45390298,+!p5@RUNX2!0.79!8.90!RUNX2;;chr12:66218836..66218888,+!p1@HMGA2!0.78!50.76!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.78!17.59!TWIST2;;chr22:39916558..39916579,+!p1@ATF4!0.77!1554.87!ATF4;;chr19:45971246..45971265,+!p1@FOSB!0.77!100.40!FOSB;;chr9:14083467..14083483,-!p4@NFIB!0.77!13.02!NFIB;;chr9:14313893..14313908,-!p7@NFIB!0.76!7.01!NFIB;;chr10:8096772..8096787,+!p2@GATA3!0.76!5.79!GATA3;;chr3:101568349..101568365,+!p1@NFKBIZ!0.75!269.14!NFKBIZ;;chr12:26277929..26277955,-!p3@BHLHE41!0.75!6.79!BHLHE41;;chr1:201979703..201979721,+!p2@ELF3!0.75!4.67!ELF3;;chr19:42636586..42636607,-!p1@POU2F2!0.74!13.58!POU2F2;;chr2:192015701..192015743,-!p1@STAT4!0.74!6.34!STAT4;;chr20:48807351..48807384,+!p1@CEBPB!0.73!507.12!CEBPB;;chr19:45908292..45908374,-!p1@PPP1R13L!0.73!43.63!PPP1R13L;;chr7:28448965..28448994,+!p2@CREB5!0.73!16.81!CREB5;;chr6:45389791..45389832,+!p3@RUNX2!0.73!12.13!RUNX2;;chr1:59249645..59249656,-!p4@JUN!0.73!11.91!JUN;;chr5:150284532..150284549,-!p1@ZNF300!0.73!9.68!ZNF300;;chr13:72441315..72441454,-!p1@DACH1!0.73!9.46!DACH1;;chr8:80679993..80680011,-!p1@HEY1!0.73!6.57!HEY1;;chr12:66218003..66218018,+!p9@HMGA2!0.73!5.45!HMGA2;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.34!ETV4;;chr9:102584128..102584144,+!p3@NR4A3!0.72!8.57!NR4A3;;chr9:102584159..102584174,+!p2@NR4A3!0.72!8.24!NR4A3;;chr10:28035133..28035148,-!p3@MKX!0.72!4.23!MKX;;chr2:46524537..46524553,+!p1@EPAS1!0.71!466.38!EPAS1;;chr17:46126136..46126152,+!p1@NFE2L1!0.71!241.21!NFE2L1;;chr20:306489..306564,+!p1@SOX12!0.71!50.53!SOX12;;chr2:157189180..157189290,-!p1@NR4A2!0.71!24.38!NR4A2;;chr3:114343768..114343822,-!p1@ZBTB20!0.71!20.26!ZBTB20;;chr14:73360799..73360817,-!p1@DPF3!0.71!15.92!DPF3;;chr7:19157248..19157268,-!p1@TWIST1!0.71!12.47!TWIST1;;chr6:85473156..85473210,-!p2@TBX18!0.71!5.23!TBX18;;chr5:137801160..137801176,+!p1@EGR1!0.70!458.81!EGR1;;chr18:3450161..3450183,+!p1@TGIF1!0.70!155.61!TGIF1;;chr8:57123815..57123867,-!p1@PLAG1!0.70!18.37!PLAG1;;chr5:134369905..134369972,-!p1@PITX1!0.70!6.57!PITX1;;chr4:149363475..149363492,-!p2@NR3C2!0.70!4.01!NR3C2;;chr14:62162285..62162296,+!p3@HIF1A!0.69!22.82!HIF1A;;chr12:96588368..96588394,+!p3@ELK3!0.69!11.69!ELK3;;chr18:19749517..19749531,+!p3@GATA6!0.69!7.57!GATA6;;chr9:73029018..73029042,-!p6@KLF9!0.69!5.34!KLF9;;chr6:45390077..45390105,+!p9@RUNX2!0.69!5.12!RUNX2;;chr15:67357924..67357952,+!p2@SMAD3!0.68!28.38!SMAD3;;chr3:24536253..24536328,-!p1@THRB!0.68!7.68!THRB;;chr9:16870710..16870763,-!p1@BNC2!0.68!7.12!BNC2;;chr17:41623259..41623278,-!p7@ETV4!0.68!4.56!ETV4;;chr4:149363494..149363543,-!p1@NR3C2!0.68!3.78!NR3C2;;chr11:128563948..128564003,+!p1@FLI1!0.67!51.20!FLI1;;chr14:62162258..62162269,+!p2@HIF1A!0.67!40.74!HIF1A;;chr5:137804484..137804498,+!p2@EGR1!0.67!16.70!EGR1;;chr12:66218255..66218304,+!p3@HMGA2!0.67!11.13!HMGA2;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.90!ETV4;;chr14:24630902..24630948,+!p2@IRF9!0.67!4.67!IRF9;;chr2:191878812..191878823,-!p2@STAT1!0.66!4.67!STAT1;;chr12:26278008..26278024,-!p4@BHLHE41!0.66!4.34!BHLHE41;;chr6:21593973..21593988,+!p1@SOX4!0.65!145.37!SOX4;;chr9:110252035..110252057,-!p1@KLF4!0.65!65.12!KLF4;;chr14:61191018..61191048,-!p1@SIX4!0.65!8.35!SIX4;;chr2:28618532..28618610,+!p4@FOSL2!0.65!6.46!FOSL2;;chr17:46675420..46675465,-!p3@HOXB6!0.65!4.12!HOXB6;;chr2:113982635..113982648,-!p8@PAX8!0.65!3.45!PAX8;;chr2:96012397..96012417,+!p3@KCNIP3!0.65!3.45!KCNIP3;;chr2:191878874..191878938,-!p1@STAT1!0.64!217.72!STAT1;;chr17:70117153..70117174,+!p1@SOX9!0.64!40.41!SOX9;;chr19:53636125..53636178,-!p1@ZNF415!0.64!10.80!ZNF415;;chr9:14314106..14314119,-!p5@NFIB!0.64!6.68!NFIB;;chr14:37131058..37131139,+!p1@PAX9!0.64!3.34!PAX9;;chr5:158526917..158526932,-!p1@EBF1!0.63!9.24!EBF1;;chr6:45390442..45390479,+!p8@RUNX2!0.63!5.34!RUNX2;;chr3:169381420..169381535,-!p1@MECOM!0.63!3.90!MECOM;;chr2:102091566..102091581,-!p1@RFX8!0.63!3.23!RFX8;;chr2:46612891..46612907,+!p10@EPAS1!0.63!3.23!EPAS1;;chr3:141087562..141087594,+!p12@ZBTB38!0.63!3.23!ZBTB38;;chr22:38597987..38598021,+!p2@MAFF!0.62!22.82!MAFF;;chr15:60884706..60884743,-!p1@RORA!0.62!19.26!RORA;;chr20:39946361..39946379,-!p2@ZHX3!0.62!10.80!ZHX3;;chr12:27485762..27485776,+!p3@ARNTL2!0.62!9.80!ARNTL2;;chr7:44143978..44143989,+!p2@AEBP1!0.62!6.46!AEBP1;;chr2:239756739..239756755,+!p2@TWIST2!0.62!5.90!TWIST2;;chr19:33865009..33865090,+!p3@CEBPG!0.62!4.45!CEBPG;;chr8:72756637..72756664,-!p3@MSC!0.62!3.67!MSC;;chr13:45010939..45011033,-!p1@TSC22D1!0.61!243.54!TSC22D1;;chr12:11802600..11802685,+!p1@ETV6!0.61!55.99!ETV6;;chr19:52839515..52839572,+!p1@ZNF610!0.61!7.35!ZNF610;;chr11:615570..615721,-!p2@IRF7!0.61!6.68!IRF7;;chr6:1612248..1612281,+!p2@FOXC1!0.61!3.45!FOXC1;;chr6:1612300..1612324,+!p3@FOXC1!0.61!3.12!FOXC1;;chr11:31832687..31832704,-!p6@PAX6!0.61!3.12!PAX6;;chr3:114866084..114866118,-!p2@ZBTB20!0.60!12.58!ZBTB20;;chr9:14314522..14314556,-!p3@NFIB!0.60!8.01!NFIB;;chr10:28034772..28034783,-!p4@MKX!0.60!3.01!MKX;;chr22:41697520..41697613,+!p1@ZC3H7B!0.59!199.69!ZC3H7B;;chr19:19932513..19932569,-!p1@ZNF506!0.59!66.56!ZNF506;;chr20:48599506..48599526,+!p1@SNAI1!0.59!22.26!SNAI1;;chr8:22550982..22550999,-!p1@EGR3!0.59!9.57!EGR3;;chr10:64576105..64576133,-!p1@EGR2!0.59!6.68!EGR2;;chr20:48807615..48807644,+!p6@CEBPB!0.59!5.23!CEBPB;;chr3:168864315..168864339,-!p2@MECOM!0.59!5.23!MECOM;;chr6:10415276..10415341,-!p2@TFAP2A!0.59!3.67!TFAP2A;;chr9:4299874..4299887,-!p9@GLIS3!0.59!2.89!GLIS3;;chr2:96012277..96012290,+!p5@KCNIP3!0.59!2.89!KCNIP3;;chr12:53614115..53614154,-!p1@RARG!0.58!18.25!RARG;;chr20:48807779..48807802,+!p10@CEBPB!0.58!5.01!CEBPB;;chr11:31832610..31832639,-!p5@PAX6!0.58!2.78!PAX6;;chr12:85673977..85674015,+!p1@ALX1!0.58!2.78!ALX1;;chr20:306177..306211,+!p2@SOX12!0.57!22.48!SOX12;;chr6:19837592..19837621,+!p1@ID4!0.57!20.48!ID4;;chr9:117150254..117150271,-!p1@AKNA!0.57!8.79!AKNA;;chr19:12203100..12203132,+!p1@ZNF788!0.57!6.23!ZNF788;;chr16:54320158..54320200,-!p5@IRX3!0.57!4.23!IRX3;;chr15:67418119..67418162,+!p5@SMAD3!0.57!3.12!SMAD3;;chr7:44143925..44143970,+!p1@AEBP1!0.56!74.24!AEBP1;;chr1:158979872..158979898,+!p3@IFI16!0.56!9.68!IFI16;;chr15:96874244..96874259,+!p5@NR2F2!0.56!7.35!NR2F2;;chr19:12163769..12163798,-!p1@ZNF878!0.56!3.67!ZNF878;;chr3:141087144..141087170,+!p11@ZBTB38!0.56!3.56!ZBTB38;;chr18:19749504..19749515,+!p5@GATA6!0.56!2.67!GATA6;;chr14:24630465..24630531,+!p1@IRF9!0.55!123.66!IRF9;;chr12:57914286..57914304,-!p1@DDIT3!0.55!116.21!DDIT3;;chr15:96874012..96874042,+!p2@NR2F2!0.55!28.72!NR2F2;;chr17:38256822..38256851,-!p1@NR1D1!0.55!25.16!NR1D1;;chr9:102584262..102584276,+!p1@NR4A3!0.55!6.68!NR4A3;;chr8:73921136..73921151,+!p2@TERF1!0.55!4.23!TERF1;;chr1:214161272..214161322,+!p1@PROX1!0.55!3.90!PROX1;;chr20:50179584..50179611,-!p6@NFATC2!0.55!2.56!NFATC2;;chr6:28321827..28321856,-!p5@ZNF323!0.55!2.56!ZNF323;;chr6:28322004..28322023,-!p6@ZNF323!0.55!2.56!ZNF323;;chr10:64018918..64018936,+!p2@ZNF365!0.55!2.56!ZNF365;;chr12:56753869..56753930,-!p1@STAT2!0.54!140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MAF1!0.22!1.34!MAF1;;chr14:89878529..89878559,-!p5@FOXN3!0.22!1.22!FOXN3;;chrX:129402754..129402766,-!p3@ZNF280C!0.22!1.22!ZNF280C;;chr4:146403912..146403972,+!p5@SMAD1!0.22!1.11!SMAD1;;chr5:150284461..150284481,-!p4@ZNF300!0.22!1.00!ZNF300;;chr22:41735880..41735903,+!p5@ZC3H7B!0.22!0.89!ZC3H7B;;chr4:149363544..149363583,-!p3@NR3C2!0.22!0.89!NR3C2;;chr12:66218152..66218174,+!p10@HMGA2!0.22!0.78!HMGA2;;chr11:31832549..31832562,-!p10@PAX6!0.22!0.67!PAX6;;chr11:31832862..31832884,-!p2@PAX6!0.22!0.67!PAX6;;chr12:66218923..66218934,+!p14@HMGA2!0.22!0.67!HMGA2;;chr13:72440901..72440968,-!p4@DACH1!0.22!0.67!DACH1;;chr5:134369222..134369237,-!p8@PITX1!0.22!0.67!PITX1;;chr5:158527139..158527161,-!p5@EBF1!0.22!0.67!EBF1;;chr6:1312155..1312187,+!p2@FOXQ1!0.22!0.67!FOXQ1;;chr8:30890810..30890880,-!p1@PURG!0.22!0.67!PURG;;chr8:57123898..57123909,-!p3@PLAG1!0.22!0.67!PLAG1;;chr19:42636625..42636632,-!p2@POU2F2!0.22!0.67!POU2F2;;chr20:49547417..49547424,-!p8@ADNP!0.22!0.67!ADNP;;chr21:36260495..36260506,-!p23@RUNX1!0.22!0.67!RUNX1;;chr9:22446814..22446830,+!p4@DMRTA1!0.22!0.67!DMRTA1;;chr9:14314066..14314075,-!p11@NFIB!0.22!0.67!NFIB;;chr22:39916888..39916894,+!p12@ATF4!0.22!0.67!ATF4;;chr2:113978342..113978354,-!p18@PAX8!0.22!0.67!PAX8;;chr2:172967242..172967265,-!p2@DLX2!0.22!0.67!DLX2;;chr2:172967323..172967336,-!p4@DLX2!0.22!0.67!DLX2;;chr2:172967353..172967365,-!p5@DLX2!0.22!0.67!DLX2;;chr2:200323212..200323223,-!p8@SATB2!0.22!0.67!SATB2;;chr2:85981027..85981047,+!p8@ATOH8!0.22!0.67!ATOH8;;chr2:95963052..95963106,+!p1@KCNIP3!0.22!0.67!KCNIP3;;chr3:24536332..24536358,-!p2@THRB!0.22!0.67!THRB;;chr14:75746340..75746368,+!p3@FOS!0.22!0.67!FOS;;chr14:99738138..99738163,-!p1@BCL11B!0.22!0.67!BCL11B;;chr15:83953782..83953786,-!p5@BNC1!0.22!0.67!BNC1;;chr15:96869165..96869183,+!p20@NR2F2!0.22!0.67!NR2F2;;chr17:7387459..7387470,-!p10@ZBTB4!0.22!0.67!ZBTB4;;chr18:32924372..32924430,-!p1@ZNF24!0.21!44.52!ZNF24;;chr2:27357479..27357524,-!p1@PREB!0.21!41.74!PREB;;chr14:89029366..89029425,+!p1@ZC3H14!0.21!33.50!ZC3H14;;chr20:39946279..39946356,-!p1@ZHX3!0.21!21.93!ZHX3;;chr9:2015335..2015370,+!p1@SMARCA2!0.21!17.25!SMARCA2;;chr20:61493117..61493187,-!p1@TCFL5!0.21!16.03!TCFL5;;chr19:52772832..52772861,+!p1@ZNF766!0.21!14.14!ZNF766;;chr19:52643169..52643199,-!p1@ZNF616!0.21!7.90!ZNF616;;chr6:34205372..34205412,+!p5@HMGA1!0.21!6.79!HMGA1;;chr19:44507091..44507163,+!p1@ZNF230!0.21!5.68!ZNF230;;chr16:30546141..30546240,-!p1@ZNF747,p2@ZNF768!0.21!5.12!ZNF747;;chr17:7382856..7382889,-!p3@ZBTB4!0.21!5.12!ZBTB4;;chr16:71918033..71918101,-!p1@ZNF821!0.21!4.67!ZNF821;;chr19:12146483..12146546,-!p1@ZNF433!0.21!4.56!ZNF433;;chr19:46272106..46272115,-!p3@SIX5!0.21!3.23!SIX5;;chr10:94449675..94449694,+!p2@HHEX!0.21!3.12!HHEX;;chr16:3185125..3185173,+!p1@ZNF213!0.21!2.89!ZNF213;;chr19:35225078..35225120,+!p2@ZNF181!0.21!2.56!ZNF181;;chr10:63809134..63809145,+!p6@ARID5B!0.21!2.56!ARID5B;;chr4:146402925..146402957,+!p4@SMAD1!0.21!2.56!SMAD1;;chr3:126194815..126194848,-!p2@ZXDC!0.21!2.45!ZXDC;;chr5:180287681..180287694,-!p2@ZFP62!0.21!2.34!ZFP62;;chr14:89628064..89628109,-!p4@FOXN3!0.21!2.23!FOXN3;;chr6:21597514..21597578,+!p4@SOX4!0.21!1.67!SOX4;;chr9:20621927..20621996,-!p3@MLLT3!0.21!1.67!MLLT3;;chr5:178287021..178287042,+!p2@ZNF354B!0.21!1.56!ZNF354B;;chr11:3400442..3400453,-!p2@ZNF195!0.21!1.56!ZNF195;;chr14:64970451..64970473,-!p6@ZBTB25!0.21!1.56!ZBTB25;;chr4:87928166..87928186,+!p12@AFF1!0.21!1.45!AFF1;;chr15:67358128..67358133,+!p12@SMAD3!0.21!1.22!SMAD3;;chr2:46612334..46612349,+!p6@EPAS1!0.21!1.11!EPAS1;;chr11:57103283..57103290,-!p3@SSRP1!0.21!1.11!SSRP1;;chr14:69261310..69261326,-!p5@ZFP36L1!0.21!1.11!ZFP36L1;;chr16:4323323..4323333,-!p4@TFAP4!0.21!1.00!TFAP4;; | ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0007123,UBERON:0010316 | |||
|fonse_cell_line=FF:0101120,FF:0101610 | |fonse_cell_line=FF:0101120,FF:0101610 | ||
|fonse_cell_line_closure=FF:0101120,FF:0101610 | |fonse_cell_line_closure=FF:0101120,FF:0101610 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10428-106D5 | |id=FF:10428-106D5 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100919 | |is_a=EFO:0002091;;FF:0000210;;FF:0100919 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10745 | |||
|library_id_phase_based=2:CNhs10745 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10428 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10428 | |||
|name=anaplastic carcinoma cell line:8305C | |name=anaplastic carcinoma cell line:8305C | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10745,LSID692,release008,COMPLETED | |profile_hcage=CNhs10745,LSID692,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 78: | ||
|rna_weight_ug=19.9385 | |rna_weight_ug=19.9385 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1909 | |sample_cell_catalog=RCB1909 | ||
|sample_cell_line=8305C | |sample_cell_line=8305C | ||
| Line 79: | Line 100: | ||
|top_motifs=NKX2-1,4:2.02671835886;NKX3-1:1.617003361;EN1,2:1.47844367434;NFIX:1.31515308015;bHLH_family:1.15622804955;HBP1_HMGB_SSRP1_UBTF:1.09678594036;HIF1A:1.01475358668;EVI1:1.01151918087;AIRE:1.00106992477;PAX5:1.00054613577;TFDP1:0.973749769304;RXR{A,B,G}:0.924602930724;FOXA2:0.915437000062;DBP:0.908729789657;PAX4:0.905622221986;GTF2A1,2:0.87064598238;TBX4,5:0.864825477491;ZBTB16:0.809843093262;ELK1,4_GABP{A,B1}:0.804001927021;ATF6:0.785413927192;FOXP1:0.770953720226;ZFP161:0.769820581701;PITX1..3:0.753722635774;HOX{A4,D4}:0.6787277893;ONECUT1,2:0.675462133912;POU1F1:0.634033534893;ALX1:0.596210382622;AHR_ARNT_ARNT2:0.591915014259;MAFB:0.573094207432;LHX3,4:0.557852396129;IRF7:0.553789357351;FOXL1:0.530704564721;HLF:0.530167044679;PPARG:0.528281257411;IRF1,2:0.528112305289;NHLH1,2:0.516914854813;CEBPA,B_DDIT3:0.513496089148;TLX1..3_NFIC{dimer}:0.495520690186;BPTF:0.482235573961;DMAP1_NCOR{1,2}_SMARC:0.450714184057;PRDM1:0.433486861174;SP1:0.425795928342;MTE{core}:0.425415387385;NKX2-2,8:0.409873389188;TFAP2{A,C}:0.386786404727;CDC5L:0.377585452822;VSX1,2:0.37336774332;MED-1{core}:0.364750648534;ARID5B:0.361915142762;TEAD1:0.358290196339;FOX{D1,D2}:0.354561589382;FOXQ1:0.347286482938;STAT5{A,B}:0.345598166056;MAZ:0.342561681152;UFEwm:0.318248813782;HIC1:0.31119312307;HOXA9_MEIS1:0.300897693183;NKX3-2:0.300683469256;PATZ1:0.286186686778;FOS_FOS{B,L1}_JUN{B,D}:0.260623645744;TEF:0.247043601498;HSF1,2:0.244842825724;ATF5_CREB3:0.241212558275;TOPORS:0.240037092512;BACH2:0.235391185001;POU2F1..3:0.231616078412;CDX1,2,4:0.228121832722;NRF1:0.224989766713;EGR1..3:0.218594957516;FOSL2:0.216116814315;EP300:0.212676870306;FOXO1,3,4:0.19436610153;FOX{F1,F2,J1}:0.189193138388;POU5F1:0.189144548473;ELF1,2,4:0.181562901522;NFKB1_REL_RELA:0.177161613161;NFE2:0.160749305805;TFAP2B:0.158488168781;ZBTB6:0.157013734554;NFATC1..3:0.156735512945;HES1:0.149339162284;GZF1:0.148716619547;FOX{I1,J2}:0.143431244972;PAX8:0.133005353382;ATF4:0.131807304446;AR:0.12898649159;NKX6-1,2:0.117504439534;FOXN1:0.112664056322;CRX:0.107467353888;MYFfamily:0.105386276487;MYBL2:0.103848862052;SRF:0.0731929722078;SOX17:0.0715044083848;MZF1:0.0642575215622;MTF1:0.0617955964998;STAT2,4,6:0.0607084150174;SOX{8,9,10}:0.0575665367547;POU3F1..4:0.0563681521808;ZNF238:0.0537043016163;SPZ1:0.0501740945517;TBP:0.0233958957656;GFI1B:0.0218200960807;RREB1:0.0125855251191;NR6A1:0.00107842376824;ZNF143:-0.00617871555207;BREu{core}:-0.00648762674336;FOXD3:-0.0145189312237;HOX{A5,B5}:-0.0295855119173;ADNP_IRX_SIX_ZHX:-0.0408518919235;NFE2L2:-0.0411310125143;HNF1A:-0.0414941969194;LEF1_TCF7_TCF7L1,2:-0.0838493606291;GATA6:-0.0900804642917;HMGA1,2:-0.10256266581;SOX2:-0.127275291426;REST:-0.128086779768;YY1:-0.135429882743;GTF2I:-0.136020760658;T:-0.138531162542;ETS1,2:-0.141996604548;SREBF1,2:-0.15634681561;RUNX1..3:-0.177558905687;XCPE1{core}:-0.186085023913;POU6F1:-0.199674641605;TLX2:-0.21355128983;NFY{A,B,C}:-0.217179793207;SPI1:-0.217286905383;CUX2:-0.221243142353;TP53:-0.223704589261;EBF1:-0.240593608529;RORA:-0.257403166936;ZNF384:-0.260994486022;XBP1:-0.264149719458;PAX2:-0.273801935005;MYOD1:-0.301682040218;NFIL3:-0.310422291977;RFX1:-0.32232530197;MEF2{A,B,C,D}:-0.340668831396;NR3C1:-0.363128642129;GLI1..3:-0.369586134901;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.400900675153;NR1H4:-0.40105293741;HMX1:-0.402094987907;KLF4:-0.403376867232;PRRX1,2:-0.416418081206;ZEB1:-0.421960263667;SOX5:-0.425870023794;IKZF2:-0.431402626759;SPIB:-0.436722408054;TAL1_TCF{3,4,12}:-0.437856177768;HNF4A_NR2F1,2:-0.440206352804;PAX3,7:-0.443308148631;ALX4:-0.456935073598;GFI1:-0.466957641073;SMAD1..7,9:-0.471271403296;ATF2:-0.474546699606;STAT1,3:-0.47788339954;MYB:-0.481245864941;PDX1:-0.490400078027;NFE2L1:-0.490968333325;PAX6:-0.497600212616;RFX2..5_RFXANK_RFXAP:-0.501275008416;IKZF1:-0.50342528897;PBX1:-0.506214408286;E2F1..5:-0.509007444339;TFCP2:-0.509063049014;ZIC1..3:-0.525457555456;TGIF1:-0.537003491657;TFAP4:-0.544708019315;HAND1,2:-0.546572523293;ZNF423:-0.5547825524;ZNF148:-0.605820035703;FOXP3:-0.611596661929;RBPJ:-0.644405558695;RXRA_VDR{dimer}:-0.64631634962;OCT4_SOX2{dimer}:-0.685769628172;FOXM1:-0.692419847695;CREB1:-0.742115698239;NANOG{mouse}:-0.769590869622;LMO2:-0.774055313491;JUN:-0.777430631825;NKX2-3_NKX2-5:-0.844197836068;SNAI1..3:-0.846652397775;GATA4:-0.86975073851;GCM1,2:-0.935541808184;ESR1:-1.01197590083;PAX1,9:-1.06965912743;HOX{A6,A7,B6,B7}:-1.1322636278;NANOG:-1.15740364088;ESRRA:-1.1955859622;NR5A1,2:-1.79244209627;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.99476241037 | |top_motifs=NKX2-1,4:2.02671835886;NKX3-1:1.617003361;EN1,2:1.47844367434;NFIX:1.31515308015;bHLH_family:1.15622804955;HBP1_HMGB_SSRP1_UBTF:1.09678594036;HIF1A:1.01475358668;EVI1:1.01151918087;AIRE:1.00106992477;PAX5:1.00054613577;TFDP1:0.973749769304;RXR{A,B,G}:0.924602930724;FOXA2:0.915437000062;DBP:0.908729789657;PAX4:0.905622221986;GTF2A1,2:0.87064598238;TBX4,5:0.864825477491;ZBTB16:0.809843093262;ELK1,4_GABP{A,B1}:0.804001927021;ATF6:0.785413927192;FOXP1:0.770953720226;ZFP161:0.769820581701;PITX1..3:0.753722635774;HOX{A4,D4}:0.6787277893;ONECUT1,2:0.675462133912;POU1F1:0.634033534893;ALX1:0.596210382622;AHR_ARNT_ARNT2:0.591915014259;MAFB:0.573094207432;LHX3,4:0.557852396129;IRF7:0.553789357351;FOXL1:0.530704564721;HLF:0.530167044679;PPARG:0.528281257411;IRF1,2:0.528112305289;NHLH1,2:0.516914854813;CEBPA,B_DDIT3:0.513496089148;TLX1..3_NFIC{dimer}:0.495520690186;BPTF:0.482235573961;DMAP1_NCOR{1,2}_SMARC:0.450714184057;PRDM1:0.433486861174;SP1:0.425795928342;MTE{core}:0.425415387385;NKX2-2,8:0.409873389188;TFAP2{A,C}:0.386786404727;CDC5L:0.377585452822;VSX1,2:0.37336774332;MED-1{core}:0.364750648534;ARID5B:0.361915142762;TEAD1:0.358290196339;FOX{D1,D2}:0.354561589382;FOXQ1:0.347286482938;STAT5{A,B}:0.345598166056;MAZ:0.342561681152;UFEwm:0.318248813782;HIC1:0.31119312307;HOXA9_MEIS1:0.300897693183;NKX3-2:0.300683469256;PATZ1:0.286186686778;FOS_FOS{B,L1}_JUN{B,D}:0.260623645744;TEF:0.247043601498;HSF1,2:0.244842825724;ATF5_CREB3:0.241212558275;TOPORS:0.240037092512;BACH2:0.235391185001;POU2F1..3:0.231616078412;CDX1,2,4:0.228121832722;NRF1:0.224989766713;EGR1..3:0.218594957516;FOSL2:0.216116814315;EP300:0.212676870306;FOXO1,3,4:0.19436610153;FOX{F1,F2,J1}:0.189193138388;POU5F1:0.189144548473;ELF1,2,4:0.181562901522;NFKB1_REL_RELA:0.177161613161;NFE2:0.160749305805;TFAP2B:0.158488168781;ZBTB6:0.157013734554;NFATC1..3:0.156735512945;HES1:0.149339162284;GZF1:0.148716619547;FOX{I1,J2}:0.143431244972;PAX8:0.133005353382;ATF4:0.131807304446;AR:0.12898649159;NKX6-1,2:0.117504439534;FOXN1:0.112664056322;CRX:0.107467353888;MYFfamily:0.105386276487;MYBL2:0.103848862052;SRF:0.0731929722078;SOX17:0.0715044083848;MZF1:0.0642575215622;MTF1:0.0617955964998;STAT2,4,6:0.0607084150174;SOX{8,9,10}:0.0575665367547;POU3F1..4:0.0563681521808;ZNF238:0.0537043016163;SPZ1:0.0501740945517;TBP:0.0233958957656;GFI1B:0.0218200960807;RREB1:0.0125855251191;NR6A1:0.00107842376824;ZNF143:-0.00617871555207;BREu{core}:-0.00648762674336;FOXD3:-0.0145189312237;HOX{A5,B5}:-0.0295855119173;ADNP_IRX_SIX_ZHX:-0.0408518919235;NFE2L2:-0.0411310125143;HNF1A:-0.0414941969194;LEF1_TCF7_TCF7L1,2:-0.0838493606291;GATA6:-0.0900804642917;HMGA1,2:-0.10256266581;SOX2:-0.127275291426;REST:-0.128086779768;YY1:-0.135429882743;GTF2I:-0.136020760658;T:-0.138531162542;ETS1,2:-0.141996604548;SREBF1,2:-0.15634681561;RUNX1..3:-0.177558905687;XCPE1{core}:-0.186085023913;POU6F1:-0.199674641605;TLX2:-0.21355128983;NFY{A,B,C}:-0.217179793207;SPI1:-0.217286905383;CUX2:-0.221243142353;TP53:-0.223704589261;EBF1:-0.240593608529;RORA:-0.257403166936;ZNF384:-0.260994486022;XBP1:-0.264149719458;PAX2:-0.273801935005;MYOD1:-0.301682040218;NFIL3:-0.310422291977;RFX1:-0.32232530197;MEF2{A,B,C,D}:-0.340668831396;NR3C1:-0.363128642129;GLI1..3:-0.369586134901;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.400900675153;NR1H4:-0.40105293741;HMX1:-0.402094987907;KLF4:-0.403376867232;PRRX1,2:-0.416418081206;ZEB1:-0.421960263667;SOX5:-0.425870023794;IKZF2:-0.431402626759;SPIB:-0.436722408054;TAL1_TCF{3,4,12}:-0.437856177768;HNF4A_NR2F1,2:-0.440206352804;PAX3,7:-0.443308148631;ALX4:-0.456935073598;GFI1:-0.466957641073;SMAD1..7,9:-0.471271403296;ATF2:-0.474546699606;STAT1,3:-0.47788339954;MYB:-0.481245864941;PDX1:-0.490400078027;NFE2L1:-0.490968333325;PAX6:-0.497600212616;RFX2..5_RFXANK_RFXAP:-0.501275008416;IKZF1:-0.50342528897;PBX1:-0.506214408286;E2F1..5:-0.509007444339;TFCP2:-0.509063049014;ZIC1..3:-0.525457555456;TGIF1:-0.537003491657;TFAP4:-0.544708019315;HAND1,2:-0.546572523293;ZNF423:-0.5547825524;ZNF148:-0.605820035703;FOXP3:-0.611596661929;RBPJ:-0.644405558695;RXRA_VDR{dimer}:-0.64631634962;OCT4_SOX2{dimer}:-0.685769628172;FOXM1:-0.692419847695;CREB1:-0.742115698239;NANOG{mouse}:-0.769590869622;LMO2:-0.774055313491;JUN:-0.777430631825;NKX2-3_NKX2-5:-0.844197836068;SNAI1..3:-0.846652397775;GATA4:-0.86975073851;GCM1,2:-0.935541808184;ESR1:-1.01197590083;PAX1,9:-1.06965912743;HOX{A6,A7,B6,B7}:-1.1322636278;NANOG:-1.15740364088;ESRRA:-1.1955859622;NR5A1,2:-1.79244209627;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.99476241037 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10428-106D5;search_select_hide=table117:FF:10428-106D5 | |||
}} | }} | ||
Latest revision as of 14:01, 3 June 2020
| Name: | anaplastic carcinoma cell line:8305C |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10745 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10745
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10745
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.115 |
| 10 | 10 | 0.313 |
| 100 | 100 | 0.98 |
| 101 | 101 | 0.573 |
| 102 | 102 | 0.119 |
| 103 | 103 | 0.176 |
| 104 | 104 | 0.471 |
| 105 | 105 | 0.124 |
| 106 | 106 | 0.584 |
| 107 | 107 | 0.641 |
| 108 | 108 | 0.495 |
| 109 | 109 | 0.0768 |
| 11 | 11 | 0.243 |
| 110 | 110 | 0.705 |
| 111 | 111 | 0.352 |
| 112 | 112 | 0.00396 |
| 113 | 113 | 0.107 |
| 114 | 114 | 0.083 |
| 115 | 115 | 0.239 |
| 116 | 116 | 0.526 |
| 117 | 117 | 0.419 |
| 118 | 118 | 0.925 |
| 119 | 119 | 0.32 |
| 12 | 12 | 0.655 |
| 120 | 120 | 0.715 |
| 121 | 121 | 0.558 |
| 122 | 122 | 0.0238 |
| 123 | 123 | 0.617 |
| 124 | 124 | 0.409 |
| 125 | 125 | 0.789 |
| 126 | 126 | 0.446 |
| 127 | 127 | 0.188 |
| 128 | 128 | 0.379 |
| 129 | 129 | 0.158 |
| 13 | 13 | 0.213 |
| 130 | 130 | 0.685 |
| 131 | 131 | 0.535 |
| 132 | 132 | 0.993 |
| 133 | 133 | 0.737 |
| 134 | 134 | 0.691 |
| 135 | 135 | 0.652 |
| 136 | 136 | 0.397 |
| 137 | 137 | 0.851 |
| 138 | 138 | 0.501 |
| 139 | 139 | 0.941 |
| 14 | 14 | 0.224 |
| 140 | 140 | 0.012 |
| 141 | 141 | 0.0308 |
| 142 | 142 | 0.122 |
| 143 | 143 | 0.832 |
| 144 | 144 | 0.908 |
| 145 | 145 | 0.969 |
| 146 | 146 | 0.931 |
| 147 | 147 | 0.71 |
| 148 | 148 | 0.0647 |
| 149 | 149 | 0.474 |
| 15 | 15 | 0.813 |
| 150 | 150 | 0.789 |
| 151 | 151 | 0.408 |
| 152 | 152 | 0.18 |
| 153 | 153 | 0.555 |
| 154 | 154 | 0.844 |
| 155 | 155 | 0.173 |
| 156 | 156 | 0.536 |
| 157 | 157 | 0.907 |
| 158 | 158 | 0.345 |
| 159 | 159 | 0.604 |
| 16 | 16 | 0.257 |
| 160 | 160 | 0.0969 |
| 161 | 161 | 0.749 |
| 162 | 162 | 0.581 |
| 163 | 163 | 0.109 |
| 164 | 164 | 0.374 |
| 165 | 165 | 0.955 |
| 166 | 166 | 0.613 |
| 167 | 167 | 0.533 |
| 168 | 168 | 0.0427 |
| 169 | 169 | 0.00728 |
| 17 | 17 | 0.166 |
| 18 | 18 | 0.784 |
| 19 | 19 | 0.212 |
| 2 | 2 | 0.455 |
| 20 | 20 | 0.387 |
| 21 | 21 | 0.713 |
| 22 | 22 | 0.0598 |
| 23 | 23 | 0.949 |
| 24 | 24 | 0.395 |
| 25 | 25 | 0.225 |
| 26 | 26 | 0.418 |
| 27 | 27 | 0.135 |
| 28 | 28 | 0.893 |
| 29 | 29 | 0.286 |
| 3 | 3 | 0.66 |
| 30 | 30 | 0.671 |
| 31 | 31 | 0.255 |
| 32 | 32 | 0.00641 |
| 33 | 33 | 0.903 |
| 34 | 34 | 0.0584 |
| 35 | 35 | 0.748 |
| 36 | 36 | 0.454 |
| 37 | 37 | 0.198 |
| 38 | 38 | 0.165 |
| 39 | 39 | 0.799 |
| 4 | 4 | 0.384 |
| 40 | 40 | 0.0861 |
| 41 | 41 | 0.0103 |
| 42 | 42 | 0.901 |
| 43 | 43 | 0.156 |
| 44 | 44 | 0.034 |
| 45 | 45 | 0.61 |
| 46 | 46 | 0.394 |
| 47 | 47 | 0.128 |
| 48 | 48 | 0.329 |
| 49 | 49 | 0.0929 |
| 5 | 5 | 0.863 |
| 50 | 50 | 0.978 |
| 51 | 51 | 0.124 |
| 52 | 52 | 0.204 |
| 53 | 53 | 0.634 |
| 54 | 54 | 0.296 |
| 55 | 55 | 0.162 |
| 56 | 56 | 0.317 |
| 57 | 57 | 0.688 |
| 58 | 58 | 0.108 |
| 59 | 59 | 0.0101 |
| 6 | 6 | 0.65 |
| 60 | 60 | 0.0752 |
| 61 | 61 | 0.293 |
| 62 | 62 | 0.0388 |
| 63 | 63 | 0.589 |
| 64 | 64 | 0.526 |
| 65 | 65 | 0.26 |
| 66 | 66 | 0.945 |
| 67 | 67 | 0.911 |
| 68 | 68 | 0.94 |
| 69 | 69 | 0.526 |
| 7 | 7 | 0.0466 |
| 70 | 70 | 0.164 |
| 71 | 71 | 0.189 |
| 72 | 72 | 0.372 |
| 73 | 73 | 0.0822 |
| 74 | 74 | 0.269 |
| 75 | 75 | 0.294 |
| 76 | 76 | 0.397 |
| 77 | 77 | 0.052 |
| 78 | 78 | 0.153 |
| 79 | 79 | 0.576 |
| 8 | 8 | 0.215 |
| 80 | 80 | 0.205 |
| 81 | 81 | 0.397 |
| 82 | 82 | 0.0595 |
| 83 | 83 | 0.315 |
| 84 | 84 | 0.684 |
| 85 | 85 | 0.194 |
| 86 | 86 | 0.885 |
| 87 | 87 | 0.425 |
| 88 | 88 | 0.873 |
| 89 | 89 | 0.0342 |
| 9 | 9 | 0.279 |
| 90 | 90 | 0.766 |
| 91 | 91 | 0.52 |
| 92 | 92 | 0.283 |
| 93 | 93 | 0.819 |
| 94 | 94 | 0.585 |
| 95 | 95 | 0.0534 |
| 96 | 96 | 0.0968 |
| 97 | 97 | 0.638 |
| 98 | 98 | 0.00228 |
| 99 | 99 | 0.366 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10745
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100919 8305C cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002046 (thyroid gland)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0103209 (anaplastic thyroid cancer cell line sample)
0101610 (thyroid cancer cell line sample)
0100919 (8305C cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0007123 (pharyngeal pouch 2)
UBERON:0010316 (germ layer / neural crest)
