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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007694
|DRA_sample_Accession=CAGE@SAMD00005591
|accession_numbers=CAGE;DRX007799;DRR008671;DRZ000096;DRZ001481
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005591
|accession_numbers=CAGE;DRX007799;DRR008671;DRZ000096;DRZ001481;DRZ011446;DRZ012831
|accession_numbers_RNASeq=RNA-Seq;DRX057124;DRR062883;DRZ007959
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000084
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000084
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.63!421.30!TCF7;;chr5:170736243..170736279,+!p1@TLX3!2.36!229.08!TLX3;;chr4:109087445..109087463,-!p1@LEF1!2.32!209.80!LEF1;;chr4:109090075..109090095,-!p2@LEF1!2.24!171.45!LEF1;;chr6:135502501..135502546,+!p1@MYB!1.99!114.11!MYB;;chr9:77112244..77112262,+!p1@RORB!1.92!91.70!RORB;;chr5:133451347..133451358,+!p3@TCF7!1.87!72.35!TCF7;;chr4:109089901..109089930,-!p3@LEF1!1.81!63.89!LEF1;;chr5:133450365..133450444,+!p1@TCF7!1.73!229.57!TCF7;;chr5:170736216..170736238,+!p2@TLX3!1.73!52.22!TLX3;;chr8:60031619..60031676,-!p1@TOX!1.70!103.16!TOX;;chr20:42574529..42574563,+!p3@TOX2!1.69!47.74!TOX2;;chr1:25291475..25291511,-!p2@RUNX3!1.68!46.38!RUNX3;;chr10:8096631..8096660,+!p1@GATA3!1.63!49.44!GATA3;;chr2:214014959..214015006,-!p4@IKZF2!1.63!41.40!IKZF2;;chr7:50343634..50343717,+!p2@IKZF1!1.63!41.33!IKZF1;;chr1:23857698..23857733,-!p1@E2F2!1.61!72.07!E2F2;;chr3:18480217..18480239,-!p3@SATB1!1.59!38.27!SATB1;;chr2:172967621..172967637,-!p1@DLX2!1.56!92.84!DLX2;;chr10:8096772..8096787,+!p2@GATA3!1.55!40.34!GATA3;;chr2:214013461..214013517,-!p6@IKZF2!1.55!34.50!IKZF2;;chr2:214015111..214015179,-!p1@IKZF2!1.54!58.62!IKZF2;;chr3:18486354..18486377,-!p2@SATB1!1.54!42.04!SATB1;;chr2:68592406..68592424,+!p1@PLEK!1.53!32.65!PLEK;;chr3:141747459..141747475,-!p1@TFDP2!1.50!246.93!TFDP2;;chr17:37934365..37934387,-!p2@IKZF3!1.50!30.80!IKZF3;;chr4:109089996..109090012,-!p5@LEF1!1.49!30.02!LEF1;;chr6:135502408..135502459,+!p2@MYB!1.47!33.15!MYB;;chr4:109090054..109090073,-!p7@LEF1!1.47!28.60!LEF1;;chr3:141868293..141868355,-!p2@TFDP2!1.45!229.79!TFDP2;;chr7:50344251..50344288,+!p3@IKZF1!1.40!23.83!IKZF1;;chr19:50432453..50432468,+!p1@ATF5!1.37!1198.53!ATF5;;chr21:36421535..36421610,-!p2@RUNX1!1.34!73.49!RUNX1;;chr4:109087906..109087928,-!p12@LEF1!1.33!20.56!LEF1;;chr2:214015343..214015366,-!p3@IKZF2!1.32!19.71!IKZF2;;chr7:44143925..44143970,+!p1@AEBP1!1.29!403.30!AEBP1;;chr21:47063625..47063658,+!p1@PCBP3!1.27!75.48!PCBP3;;chr11:19263160..19263176,-!p1@E2F8!1.25!19.92!E2F8;;chr7:50344289..50344323,+!p1@IKZF1!1.25!16.79!IKZF1;;chr3:141747441..141747452,-!p4@TFDP2!1.24!22.77!TFDP2;;chr4:109089573..109089585,-!p8@LEF1!1.23!16.15!LEF1;;chr16:67063036..67063088,+!p1@CBFB!1.22!243.31!CBFB;;chr4:109086281..109086319,-!p9@LEF1!1.22!15.44!LEF1;;chr13:79177703..79177729,-!p2@POU4F1!1.21!15.08!POU4F1;;chr4:109090106..109090124,-!p10@LEF1!1.20!14.94!LEF1;;chr13:79177674..79177701,-!p1@POU4F1!1.20!14.80!POU4F1;;chr10:8095593..8095625,+!p3@GATA3!1.19!17.07!GATA3;;chr2:68592394..68592405,+!p2@PLEK!1.18!14.01!PLEK;;chr6:135502472..135502489,+!p3@MYB!1.15!13.16!MYB;;chr17:42295777..42295816,-!p7@UBTF!1.14!15.37!UBTF;;chr7:50348268..50348366,+!p4@IKZF1!1.14!12.66!IKZF1;;chr8:60031534..60031553,-!p8@TOX!1.13!12.38!TOX;;chr1:92949331..92949377,-!p2@GFI1!1.12!12.17!GFI1;;chrX:84498989..84499003,+!p1@ZNF711!1.11!16.29!ZNF711;;chr4:109089966..109089977,-!p15@LEF1!1.11!11.81!LEF1;;chr19:22034809..22034878,-!p2@ZNF43!1.10!40.69!ZNF43;;chr9:117150254..117150271,-!p1@AKNA!1.10!32.08!AKNA;;chr1:158979686..158979745,+!p1@IFI16!1.09!374.21!IFI16;;chr7:148581360..148581425,-!p1@EZH2!1.08!54.14!EZH2;;chrX:84499081..84499115,+!p2@ZNF711!1.08!16.22!ZNF711;;chr15:76629123..76629151,+!p1@ISL2!1.08!12.31!ISL2;;chr3:18480173..18480189,-!p6@SATB1!1.08!11.10!SATB1;;chr7:44143978..44143989,+!p2@AEBP1!1.07!19.71!AEBP1;;chr11:19263192..19263222,-!p2@E2F8!1.06!12.81!E2F8;;chr7:50343895..50343936,+!p5@IKZF1!1.06!10.60!IKZF1;;chr4:109086321..109086357,-!p16@LEF1!1.06!10.60!LEF1;;chr17:42295682..42295731,-!p17@UBTF!1.06!10.39!UBTF;;chr2:214016254..214016282,-!p7@IKZF2!1.05!10.24!IKZF2;;chrY:21906594..21906622,-!p1@KDM5D!1.04!10.03!KDM5D;;chr2:42721205..42721307,+!p4@MTA3!1.03!9.60!MTA3;;chr1:151032922..151032951,+!p2@MLLT11!1.01!15.58!MLLT11;;chr5:133450458..133450469,+!p4@TCF7!1.01!9.25!TCF7;;chr8:128748308..128748324,+!p2@MYC!1.00!255.61!MYC;;chr19:20188776..20188826,+!p1@ZNF90!1.00!24.97!ZNF90;;chr4:109090408..109090441,-!p21@LEF1!1.00!8.89!LEF1;;chr20:42295713..42295738,+!p2@MYBL2!0.99!53.07!MYBL2;;chr1:23857674..23857685,-!p3@E2F2!0.99!8.75!E2F2;;chr1:25291620..25291635,-!p4@RUNX3!0.99!8.68!RUNX3;;chr1:92951607..92951661,-!p1@GFI1!0.97!8.32!GFI1;;chr9:77112225..77112238,+!p2@RORB!0.96!8.18!RORB;;chr4:109088940..109089037,-!p4@LEF1!0.96!8.04!LEF1;;chr6:21593973..21593988,+!p1@SOX4!0.95!292.46!SOX4;;chr20:42295745..42295765,+!p1@MYBL2!0.95!133.18!MYBL2;;chr7:64838786..64838809,+!p2@ZNF92!0.95!46.81!ZNF92;;chr19:19976683..19976709,+!p1@ZNF253!0.95!36.14!ZNF253;;chr20:50159198..50159299,-!p1@NFATC2!0.94!11.38!NFATC2;;chr15:56970903..56970914,-!p10@ZNF280D!0.94!7.61!ZNF280D;;chr19:24097675..24097699,+!p1@ZNF726!0.93!25.90!ZNF726;;chr3:141820622..141820635,-!p5@TFDP2!0.93!13.80!TFDP2;;chr4:109088089..109088101,-!p11@LEF1!0.93!7.54!LEF1;;chr13:41593425..41593480,-!p1@ELF1!0.91!47.52!ELF1;;chr19:23433144..23433204,-!p1@ZNF724P!0.91!33.65!ZNF724P;;chr15:57210961..57211012,+!p3@TCF12!0.91!23.76!TCF12;;chr19:21106081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|expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.63!421.30!TCF7;;chr5:170736243..170736279,+!p1@TLX3!2.36!229.08!TLX3;;chr4:109087445..109087463,-!p1@LEF1!2.32!209.80!LEF1;;chr4:109090075..109090095,-!p2@LEF1!2.24!171.45!LEF1;;chr6:135502501..135502546,+!p1@MYB!1.99!114.11!MYB;;chr9:77112244..77112262,+!p1@RORB!1.92!91.70!RORB;;chr5:133451347..133451358,+!p3@TCF7!1.87!72.35!TCF7;;chr4:109089901..109089930,-!p3@LEF1!1.81!63.89!LEF1;;chr5:133450365..133450444,+!p1@TCF7!1.73!229.57!TCF7;;chr5:170736216..170736238,+!p2@TLX3!1.73!52.22!TLX3;;chr8:60031619..60031676,-!p1@TOX!1.70!103.16!TOX;;chr20:42574529..42574563,+!p3@TOX2!1.69!47.74!TOX2;;chr1:25291475..25291511,-!p2@RUNX3!1.68!46.38!RUNX3;;chr10:8096631..8096660,+!p1@GATA3!1.63!49.44!GATA3;;chr2:214014959..214015006,-!p4@IKZF2!1.63!41.40!IKZF2;;chr7:50343634..50343717,+!p2@IKZF1!1.63!41.33!IKZF1;;chr1:23857698..23857733,-!p1@E2F2!1.61!72.07!E2F2;;chr3:18480217..18480239,-!p3@SATB1!1.59!38.27!SATB1;;chr2:172967621..172967637,-!p1@DLX2!1.56!92.84!DLX2;;chr10:8096772..8096787,+!p2@GATA3!1.55!40.34!GATA3;;chr2:214013461..214013517,-!p6@IKZF2!1.55!34.50!IKZF2;;chr2:214015111..214015179,-!p1@IKZF2!1.54!58.62!IKZF2;;chr3:18486354..18486377,-!p2@SATB1!1.54!42.04!SATB1;;chr2:68592406..68592424,+!p1@PLEK!1.53!32.65!PLEK;;chr3:141747459..141747475,-!p1@TFDP2!1.50!246.93!TFDP2;;chr17:37934365..37934387,-!p2@IKZF3!1.50!30.80!IKZF3;;chr4:109089996..109090012,-!p5@LEF1!1.49!30.02!LEF1;;chr6:135502408..135502459,+!p2@MYB!1.47!33.15!MYB;;chr4:109090054..109090073,-!p7@LEF1!1.47!28.60!LEF1;;chr3:141868293..141868355,-!p2@TFDP2!1.45!229.79!TFDP2;;chr7:50344251..50344288,+!p3@IKZF1!1.40!23.83!IKZF1;;chr19:50432453..50432468,+!p1@ATF5!1.37!1198.53!ATF5;;chr21:36421535..36421610,-!p2@RUNX1!1.34!73.49!RUNX1;;chr4:109087906..109087928,-!p12@LEF1!1.33!20.56!LEF1;;chr2:214015343..214015366,-!p3@IKZF2!1.32!19.71!IKZF2;;chr7:44143925..44143970,+!p1@AEBP1!1.29!403.30!AEBP1;;chr21:47063625..47063658,+!p1@PCBP3!1.27!75.48!PCBP3;;chr11:19263160..19263176,-!p1@E2F8!1.25!19.92!E2F8;;chr7:50344289..50344323,+!p1@IKZF1!1.25!16.79!IKZF1;;chr3:141747441..141747452,-!p4@TFDP2!1.24!22.77!TFDP2;;chr4:109089573..109089585,-!p8@LEF1!1.23!16.15!LEF1;;chr16:67063036..67063088,+!p1@CBFB!1.22!243.31!CBFB;;chr4:109086281..109086319,-!p9@LEF1!1.22!15.44!LEF1;;chr13:79177703..79177729,-!p2@POU4F1!1.21!15.08!POU4F1;;chr4:109090106..109090124,-!p10@LEF1!1.20!14.94!LEF1;;chr13:79177674..79177701,-!p1@POU4F1!1.20!14.80!POU4F1;;chr10:8095593..8095625,+!p3@GATA3!1.19!17.07!GATA3;;chr2:68592394..68592405,+!p2@PLEK!1.18!14.01!PLEK;;chr6:135502472..135502489,+!p3@MYB!1.15!13.16!MYB;;chr17:42295777..42295816,-!p7@UBTF!1.14!15.37!UBTF;;chr7:50348268..50348366,+!p4@IKZF1!1.14!12.66!IKZF1;;chr8:60031534..60031553,-!p8@TOX!1.13!12.38!TOX;;chr1:92949331..92949377,-!p2@GFI1!1.12!12.17!GFI1;;chrX:84498989..84499003,+!p1@ZNF711!1.11!16.29!ZNF711;;chr4:109089966..109089977,-!p15@LEF1!1.11!11.81!LEF1;;chr19:22034809..22034878,-!p2@ZNF43!1.10!40.69!ZNF43;;chr9:117150254..117150271,-!p1@AKNA!1.10!32.08!AKNA;;chr1:158979686..158979745,+!p1@IFI16!1.09!374.21!IFI16;;chr7:148581360..148581425,-!p1@EZH2!1.08!54.14!EZH2;;chrX:84499081..84499115,+!p2@ZNF711!1.08!16.22!ZNF711;;chr15:76629123..76629151,+!p1@ISL2!1.08!12.31!ISL2;;chr3:18480173..18480189,-!p6@SATB1!1.08!11.10!SATB1;;chr7:44143978..44143989,+!p2@AEBP1!1.07!19.71!AEBP1;;chr11:19263192..19263222,-!p2@E2F8!1.06!12.81!E2F8;;chr7:50343895..50343936,+!p5@IKZF1!1.06!10.60!IKZF1;;chr4:109086321..109086357,-!p16@LEF1!1.06!10.60!LEF1;;chr17:42295682..42295731,-!p17@UBTF!1.06!10.39!UBTF;;chr2:214016254..214016282,-!p7@IKZF2!1.05!10.24!IKZF2;;chrY:21906594..21906622,-!p1@KDM5D!1.04!10.03!KDM5D;;chr2:42721205..42721307,+!p4@MTA3!1.03!9.60!MTA3;;chr1:151032922..151032951,+!p2@MLLT11!1.01!15.58!MLLT11;;chr5:133450458..133450469,+!p4@TCF7!1.01!9.25!TCF7;;chr8:128748308..128748324,+!p2@MYC!1.00!255.61!MYC;;chr19:20188776..20188826,+!p1@ZNF90!1.00!24.97!ZNF90;;chr4:109090408..109090441,-!p21@LEF1!1.00!8.89!LEF1;;chr20:42295713..42295738,+!p2@MYBL2!0.99!53.07!MYBL2;;chr1:23857674..23857685,-!p3@E2F2!0.99!8.75!E2F2;;chr1:25291620..25291635,-!p4@RUNX3!0.99!8.68!RUNX3;;chr1:92951607..92951661,-!p1@GFI1!0.97!8.32!GFI1;;chr9:77112225..77112238,+!p2@RORB!0.96!8.18!RORB;;chr4:109088940..109089037,-!p4@LEF1!0.96!8.04!LEF1;;chr6:21593973..21593988,+!p1@SOX4!0.95!292.46!SOX4;;chr20:42295745..42295765,+!p1@MYBL2!0.95!133.18!MYBL2;;chr7:64838786..64838809,+!p2@ZNF92!0.95!46.81!ZNF92;;chr19:19976683..19976709,+!p1@ZNF253!0.95!36.14!ZNF253;;chr20:50159198..50159299,-!p1@NFATC2!0.94!11.38!NFATC2;;chr15:56970903..56970914,-!p10@ZNF280D!0.94!7.61!ZNF280D;;chr19:24097675..24097699,+!p1@ZNF726!0.93!25.90!ZNF726;;chr3:141820622..141820635,-!p5@TFDP2!0.93!13.80!TFDP2;;chr4:109088089..109088101,-!p11@LEF1!0.93!7.54!LEF1;;chr13:41593425..41593480,-!p1@ELF1!0.91!47.52!ELF1;;chr19:23433144..23433204,-!p1@ZNF724P!0.91!33.65!ZNF724P;;chr15:57210961..57211012,+!p3@TCF12!0.91!23.76!TCF12;;chr19:21106081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Line 41: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528T-ALL%2529%2520cell%2520line%253aHPB-ALL.CNhs10746.10429-106D6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528T-ALL%2529%2520cell%2520line%253aHPB-ALL.CNhs10746.10429-106D6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528T-ALL%2529%2520cell%2520line%253aHPB-ALL.CNhs10746.10429-106D6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528T-ALL%2529%2520cell%2520line%253aHPB-ALL.CNhs10746.10429-106D6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528T-ALL%2529%2520cell%2520line%253aHPB-ALL.CNhs10746.10429-106D6.hg38.nobarcode.ctss.bed.gz
|id=FF:10429-106D6
|id=FF:10429-106D6
|is_a=CL:0000084;;EFO:0002091;;FF:0000210;;FF:0101952
|is_a=CL:0000084;;EFO:0002091;;FF:0000210;;FF:0101952
|is_obsolete=
|is_obsolete=
|library_id=CNhs10746
|library_id=CNhs10746
|library_id_phase_based=1:CNhs10746
|library_id_phase_based=2:CNhs10746
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10429
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10429
|name=acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL
|name=acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 62:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10746,LSID692,release008,COMPLETED
|profile_hcage=CNhs10746,LSID692,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=cell lines
Line 90: Line 103:
|top_motifs=MYB:2.68746035829;E2F1..5:2.23062862167;PDX1:1.88215133537;NFY{A,B,C}:1.87122882705;BREu{core}:1.71017743814;ZBTB16:1.52095812613;BPTF:1.5137421834;RORA:1.50783100498;CDX1,2,4:1.46447782174;ZNF143:1.42998307881;POU1F1:1.40354324123;DMAP1_NCOR{1,2}_SMARC:1.37842590613;FOXA2:1.37169274704;RUNX1..3:1.33431135631;TFDP1:1.32277998726;NRF1:1.3032818506;PAX8:1.28454306788;ELK1,4_GABP{A,B1}:1.23318994471;NANOG:1.22669560717;YY1:1.21521226919;T:1.17498914798;NKX2-1,4:1.16516910319;PAX3,7:1.15030855347;FOXP1:1.14193200255;ELF1,2,4:1.14001135589;IKZF2:1.09426495967;NR5A1,2:1.0756295432;RBPJ:0.962017955703;PAX6:0.938394704046;STAT1,3:0.934849105231;PITX1..3:0.927921849902;FOXP3:0.912736290317;LEF1_TCF7_TCF7L1,2:0.906543032647;SPZ1:0.879975136364;AIRE:0.869668908703;EVI1:0.849454581102;PBX1:0.834052362523;PAX4:0.807645790647;FOX{I1,J2}:0.738502344536;GATA6:0.735517157462;SOX5:0.668718476621;HBP1_HMGB_SSRP1_UBTF:0.655899873994;NKX6-1,2:0.655699194946;GFI1:0.630255879176;MYOD1:0.616039768449;TEF:0.59543403097;CUX2:0.588015685657;ZEB1:0.580053230233;RREB1:0.535878217337;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.533007497047;SPI1:0.530075705393;SOX17:0.518732998484;HES1:0.516698349197;HOXA9_MEIS1:0.50264456086;CRX:0.426360357327;SOX{8,9,10}:0.421865001999;ETS1,2:0.366903724255;POU6F1:0.360839066971;EN1,2:0.336098650686;ATF4:0.322443791785;VSX1,2:0.321733781037;POU3F1..4:0.317654530406;POU5F1:0.311318027269;NR1H4:0.310737822718;ZNF384:0.296630981742;HAND1,2:0.291514319126;HOX{A6,A7,B6,B7}:0.276895270226;FOX{F1,F2,J1}:0.26790797808;TOPORS:0.238224604127;CREB1:0.208264013781;SNAI1..3:0.199310029381;SPIB:0.183045428447;AR:0.164014279364;RFX2..5_RFXANK_RFXAP:0.162574131733;LMO2:0.161840180715;ATF5_CREB3:0.13901461825;TGIF1:0.112112601098;POU2F1..3:0.0918114494793;LHX3,4:0.066934882881;FOXD3:0.0665887230483;OCT4_SOX2{dimer}:0.0468203555635;SOX2:0.0223575349644;HMGA1,2:0.00957036999151;ONECUT1,2:-0.0183730177811;PRRX1,2:-0.0281456615043;SREBF1,2:-0.0391256450872;FOXO1,3,4:-0.0746538906995;NKX2-2,8:-0.0844365039968;NKX2-3_NKX2-5:-0.0952385413431;SMAD1..7,9:-0.112481062463;ZNF148:-0.115604940558;FOXQ1:-0.119507660867;bHLH_family:-0.143685733881;CDC5L:-0.161744094405;IRF1,2:-0.161755254053;ALX1:-0.163243841564;TFAP4:-0.172481155721;NKX3-1:-0.205166346497;HOX{A4,D4}:-0.211156310877;HNF4A_NR2F1,2:-0.231501348482;MZF1:-0.237092395546;NFKB1_REL_RELA:-0.245533763035;FOXN1:-0.245813633033;PAX2:-0.26923441003;JUN:-0.321544843648;ADNP_IRX_SIX_ZHX:-0.356010413077;NANOG{mouse}:-0.377950902052;NR3C1:-0.400080783701;HNF1A:-0.400477871141;RFX1:-0.40316192556;ZIC1..3:-0.4134699461;ZFP161:-0.43349437228;GATA4:-0.451187546958;IRF7:-0.45678079169;AHR_ARNT_ARNT2:-0.489204725159;FOX{D1,D2}:-0.490286756548;NFE2:-0.491192355822;STAT5{A,B}:-0.492541229716;TLX2:-0.499399059741;MEF2{A,B,C,D}:-0.504579338762;CEBPA,B_DDIT3:-0.521630041572;MED-1{core}:-0.526078796359;ZNF238:-0.534534473742;FOSL2:-0.537354507234;PATZ1:-0.547357797921;HLF:-0.555903455518;HOX{A5,B5}:-0.602679005458;EGR1..3:-0.60734170474;ZNF423:-0.616040612256;NFIL3:-0.616482320478;KLF4:-0.618215312911;GCM1,2:-0.627406428481;ARID5B:-0.650002286661;MYFfamily:-0.659195785763;NHLH1,2:-0.666699775718;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.672287145872;UFEwm:-0.677513150575;TAL1_TCF{3,4,12}:-0.681326625055;MYBL2:-0.699209037602;SRF:-0.712092314064;REST:-0.722027744285;FOS_FOS{B,L1}_JUN{B,D}:-0.724368533564;EP300:-0.746752989436;FOXL1:-0.776723231758;MTE{core}:-0.785694635652;MAZ:-0.797053039177;ATF2:-0.807313691704;BACH2:-0.813864672867;DBP:-0.83868498159;RXR{A,B,G}:-0.88327836618;ESRRA:-0.890405969808;HIF1A:-0.899277194106;NKX3-2:-0.933893242933;NFATC1..3:-0.976226654038;GZF1:-0.977010858304;GTF2I:-0.978339713943;TFAP2B:-1.01766813738;FOXM1:-1.02015533126;GTF2A1,2:-1.02133150861;GFI1B:-1.0707543934;NFE2L1:-1.10005709396;PRDM1:-1.10777591246;NR6A1:-1.11429756468;PAX5:-1.11972818707;ZBTB6:-1.1340695268;HIC1:-1.14413277491;MAFB:-1.15217635179;NFE2L2:-1.16857769526;PPARG:-1.17472522949;ALX4:-1.26301331209;IKZF1:-1.27457060386;ESR1:-1.27613292816;TBX4,5:-1.28200481902;TP53:-1.33676093826;XCPE1{core}:-1.34503848072;STAT2,4,6:-1.35362310434;RXRA_VDR{dimer}:-1.37321716108;XBP1:-1.39748249881;HMX1:-1.43559817781;HSF1,2:-1.44496519471;TEAD1:-1.49853857293;TLX1..3_NFIC{dimer}:-1.51395435597;EBF1:-1.53985940415;PAX1,9:-1.63220732185;TBP:-1.73655771923;NFIX:-1.73708918421;MTF1:-1.7566388388;SP1:-1.78733004252;GLI1..3:-1.83421170085;TFCP2:-2.14071501016;ATF6:-2.29134907597;TFAP2{A,C}:-2.3825664674
|top_motifs=MYB:2.68746035829;E2F1..5:2.23062862167;PDX1:1.88215133537;NFY{A,B,C}:1.87122882705;BREu{core}:1.71017743814;ZBTB16:1.52095812613;BPTF:1.5137421834;RORA:1.50783100498;CDX1,2,4:1.46447782174;ZNF143:1.42998307881;POU1F1:1.40354324123;DMAP1_NCOR{1,2}_SMARC:1.37842590613;FOXA2:1.37169274704;RUNX1..3:1.33431135631;TFDP1:1.32277998726;NRF1:1.3032818506;PAX8:1.28454306788;ELK1,4_GABP{A,B1}:1.23318994471;NANOG:1.22669560717;YY1:1.21521226919;T:1.17498914798;NKX2-1,4:1.16516910319;PAX3,7:1.15030855347;FOXP1:1.14193200255;ELF1,2,4:1.14001135589;IKZF2:1.09426495967;NR5A1,2:1.0756295432;RBPJ:0.962017955703;PAX6:0.938394704046;STAT1,3:0.934849105231;PITX1..3:0.927921849902;FOXP3:0.912736290317;LEF1_TCF7_TCF7L1,2:0.906543032647;SPZ1:0.879975136364;AIRE:0.869668908703;EVI1:0.849454581102;PBX1:0.834052362523;PAX4:0.807645790647;FOX{I1,J2}:0.738502344536;GATA6:0.735517157462;SOX5:0.668718476621;HBP1_HMGB_SSRP1_UBTF:0.655899873994;NKX6-1,2:0.655699194946;GFI1:0.630255879176;MYOD1:0.616039768449;TEF:0.59543403097;CUX2:0.588015685657;ZEB1:0.580053230233;RREB1:0.535878217337;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.533007497047;SPI1:0.530075705393;SOX17:0.518732998484;HES1:0.516698349197;HOXA9_MEIS1:0.50264456086;CRX:0.426360357327;SOX{8,9,10}:0.421865001999;ETS1,2:0.366903724255;POU6F1:0.360839066971;EN1,2:0.336098650686;ATF4:0.322443791785;VSX1,2:0.321733781037;POU3F1..4:0.317654530406;POU5F1:0.311318027269;NR1H4:0.310737822718;ZNF384:0.296630981742;HAND1,2:0.291514319126;HOX{A6,A7,B6,B7}:0.276895270226;FOX{F1,F2,J1}:0.26790797808;TOPORS:0.238224604127;CREB1:0.208264013781;SNAI1..3:0.199310029381;SPIB:0.183045428447;AR:0.164014279364;RFX2..5_RFXANK_RFXAP:0.162574131733;LMO2:0.161840180715;ATF5_CREB3:0.13901461825;TGIF1:0.112112601098;POU2F1..3:0.0918114494793;LHX3,4:0.066934882881;FOXD3:0.0665887230483;OCT4_SOX2{dimer}:0.0468203555635;SOX2:0.0223575349644;HMGA1,2:0.00957036999151;ONECUT1,2:-0.0183730177811;PRRX1,2:-0.0281456615043;SREBF1,2:-0.0391256450872;FOXO1,3,4:-0.0746538906995;NKX2-2,8:-0.0844365039968;NKX2-3_NKX2-5:-0.0952385413431;SMAD1..7,9:-0.112481062463;ZNF148:-0.115604940558;FOXQ1:-0.119507660867;bHLH_family:-0.143685733881;CDC5L:-0.161744094405;IRF1,2:-0.161755254053;ALX1:-0.163243841564;TFAP4:-0.172481155721;NKX3-1:-0.205166346497;HOX{A4,D4}:-0.211156310877;HNF4A_NR2F1,2:-0.231501348482;MZF1:-0.237092395546;NFKB1_REL_RELA:-0.245533763035;FOXN1:-0.245813633033;PAX2:-0.26923441003;JUN:-0.321544843648;ADNP_IRX_SIX_ZHX:-0.356010413077;NANOG{mouse}:-0.377950902052;NR3C1:-0.400080783701;HNF1A:-0.400477871141;RFX1:-0.40316192556;ZIC1..3:-0.4134699461;ZFP161:-0.43349437228;GATA4:-0.451187546958;IRF7:-0.45678079169;AHR_ARNT_ARNT2:-0.489204725159;FOX{D1,D2}:-0.490286756548;NFE2:-0.491192355822;STAT5{A,B}:-0.492541229716;TLX2:-0.499399059741;MEF2{A,B,C,D}:-0.504579338762;CEBPA,B_DDIT3:-0.521630041572;MED-1{core}:-0.526078796359;ZNF238:-0.534534473742;FOSL2:-0.537354507234;PATZ1:-0.547357797921;HLF:-0.555903455518;HOX{A5,B5}:-0.602679005458;EGR1..3:-0.60734170474;ZNF423:-0.616040612256;NFIL3:-0.616482320478;KLF4:-0.618215312911;GCM1,2:-0.627406428481;ARID5B:-0.650002286661;MYFfamily:-0.659195785763;NHLH1,2:-0.666699775718;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.672287145872;UFEwm:-0.677513150575;TAL1_TCF{3,4,12}:-0.681326625055;MYBL2:-0.699209037602;SRF:-0.712092314064;REST:-0.722027744285;FOS_FOS{B,L1}_JUN{B,D}:-0.724368533564;EP300:-0.746752989436;FOXL1:-0.776723231758;MTE{core}:-0.785694635652;MAZ:-0.797053039177;ATF2:-0.807313691704;BACH2:-0.813864672867;DBP:-0.83868498159;RXR{A,B,G}:-0.88327836618;ESRRA:-0.890405969808;HIF1A:-0.899277194106;NKX3-2:-0.933893242933;NFATC1..3:-0.976226654038;GZF1:-0.977010858304;GTF2I:-0.978339713943;TFAP2B:-1.01766813738;FOXM1:-1.02015533126;GTF2A1,2:-1.02133150861;GFI1B:-1.0707543934;NFE2L1:-1.10005709396;PRDM1:-1.10777591246;NR6A1:-1.11429756468;PAX5:-1.11972818707;ZBTB6:-1.1340695268;HIC1:-1.14413277491;MAFB:-1.15217635179;NFE2L2:-1.16857769526;PPARG:-1.17472522949;ALX4:-1.26301331209;IKZF1:-1.27457060386;ESR1:-1.27613292816;TBX4,5:-1.28200481902;TP53:-1.33676093826;XCPE1{core}:-1.34503848072;STAT2,4,6:-1.35362310434;RXRA_VDR{dimer}:-1.37321716108;XBP1:-1.39748249881;HMX1:-1.43559817781;HSF1,2:-1.44496519471;TEAD1:-1.49853857293;TLX1..3_NFIC{dimer}:-1.51395435597;EBF1:-1.53985940415;PAX1,9:-1.63220732185;TBP:-1.73655771923;NFIX:-1.73708918421;MTF1:-1.7566388388;SP1:-1.78733004252;GLI1..3:-1.83421170085;TFCP2:-2.14071501016;ATF6:-2.29134907597;TFAP2{A,C}:-2.3825664674
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10429-106D6;search_select_hide=table117:FF:10429-106D6
}}
}}

Latest revision as of 14:01, 3 June 2020

Name:acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL
Species:Human (Homo sapiens)
Library ID:CNhs10746
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
ageunknown
cell typet cell
cell lineHPB-ALL
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005591
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10746 CAGE DRX007799 DRR008671
Accession ID Hg19

Library idBAMCTSS
CNhs10746 DRZ000096 DRZ001481
Accession ID Hg38

Library idBAMCTSS
CNhs10746 DRZ011446 DRZ012831
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005591
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10067 RNA-Seq DRX057124 DRR062883
Accession ID Hg19

Library idBAMCTSS
RDhi10067 DRZ007959


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0249
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.828
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0578
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0.511
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0578
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0538
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.203
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.0298
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.113
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.205
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.244
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.9
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0506
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0298
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00154
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0578
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.084
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0.0578
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0219
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.74
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0222
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0.789
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.344
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10746

Jaspar motifP-value
MA0002.20.0324
MA0003.10.459
MA0004.10.281
MA0006.10.264
MA0007.10.488
MA0009.10.695
MA0014.10.469
MA0017.10.533
MA0018.20.567
MA0019.10.147
MA0024.11.80814e-11
MA0025.10.481
MA0027.10.135
MA0028.11.42389e-6
MA0029.10.793
MA0030.10.227
MA0031.10.503
MA0035.20.0319
MA0038.10.888
MA0039.20.173
MA0040.10.182
MA0041.10.39
MA0042.10.614
MA0043.10.37
MA0046.10.262
MA0047.20.527
MA0048.10.762
MA0050.10.172
MA0051.10.401
MA0052.10.022
MA0055.10.34
MA0057.10.406
MA0058.10.151
MA0059.10.0385
MA0060.19.25153e-13
MA0061.10.607
MA0062.22.28702e-11
MA0065.20.644
MA0066.10.414
MA0067.10.672
MA0068.10.168
MA0069.10.445
MA0070.10.0484
MA0071.10.251
MA0072.10.217
MA0073.10.792
MA0074.10.152
MA0076.19.48402e-11
MA0077.10.939
MA0078.10.951
MA0079.20.237
MA0080.20.103
MA0081.10.327
MA0083.10.00426
MA0084.10.803
MA0087.10.275
MA0088.10.0125
MA0090.13.30941e-5
MA0091.10.8
MA0092.10.485
MA0093.10.25
MA0099.22.93595e-10
MA0100.11.01965e-5
MA0101.10.157
MA0102.20.00321
MA0103.10.0451
MA0104.20.00638
MA0105.10.244
MA0106.10.69
MA0107.10.0476
MA0108.23.38841e-11
MA0111.10.209
MA0112.20.156
MA0113.10.359
MA0114.10.655
MA0115.10.308
MA0116.10.0783
MA0117.10.695
MA0119.10.691
MA0122.10.542
MA0124.10.268
MA0125.10.828
MA0131.10.0384
MA0135.10.0596
MA0136.18.50481e-4
MA0137.20.0437
MA0138.20.408
MA0139.10.304
MA0140.10.0438
MA0141.10.901
MA0142.10.745
MA0143.10.232
MA0144.10.00428
MA0145.10.0809
MA0146.10.594
MA0147.10.00159
MA0148.10.338
MA0149.10.635
MA0150.10.0277
MA0152.10.633
MA0153.10.0435
MA0154.10.897
MA0155.10.57
MA0156.11.92325e-8
MA0157.10.424
MA0159.10.797
MA0160.10.857
MA0162.10.244
MA0163.10.0409
MA0164.10.983
MA0258.10.82
MA0259.10.0223



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10746

Novel motifP-value
10.114
100.0214
1000.642
1010.245
1020.586
1030.987
1040.756
1050.517
1060.0624
1070.0119
1080.272
1090.633
110.305
1100.899
1110.14
1120.301
1130.8
1140.797
1150.256
1160.598
1170.042
1180.509
1190.969
120.856
1200.896
1210.477
1220.882
1234.66501e-4
1240.0773
1250.342
1260.413
1270.981
1280.187
1290.443
130.285
1300.335
1310.29
1320.532
1330.281
1340.769
1350.861
1360.334
1370.469
1380.816
1390.853
140.763
1400.679
1410.324
1420.147
1430.123
1440.524
1450.569
1460.73
1470.0358
1480.726
1490.047
150.0797
1500.994
1510.762
1520.00446
1530.906
1540.766
1550.0213
1560.86
1570.467
1580.0361
1590.635
160.513
1600.816
1610.0526
1620.69
1630.447
1640.823
1650.465
1660.73
1670.0979
1680.947
1690.157
170.706
180.785
190.0734
20.39
200.473
210.124
220.376
230.0461
240.95
250.212
260.544
270.906
280.265
290.124
30.422
300.216
310.393
320.00136
330.802
340.402
350.0899
360.243
370.83
380.879
390.0738
40.337
400.468
410.926
420.117
430.939
440.994
450.324
460.435
470.091
480.334
490.0984
50.984
500.719
510.642
520.066
530.473
540.626
550.144
560.744
570.419
580.268
590.366
60.372
600.464
610.166
620.28
630.805
640.404
650.337
660.0075
670.922
680.0586
690.784
70.264
700.962
710.396
720.615
730.0156
740.133
750.0333
760.692
770.0133
780.257
790.193
80.908
800.229
810.94
820.228
830.665
840.675
850.0105
860.674
870.733
880.601
890.243
90.573
900.0485
910.38
920.328
930.911
940.167
950.7
960.262
970.357
980.807
990.138



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10746


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000084 (T cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100741 (lymphocytic leukemia cell line sample)
0101952 (HPB-ALL cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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