FF:10429-106D6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005591 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005591 | ||
|accession_numbers=CAGE;DRX007799;DRR008671;DRZ000096;DRZ001481;DRZ011446;DRZ012831 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057124;DRR062883;DRZ007959 | |||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000084 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0100741,FF:0101952 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101035 | |fonse_cell_line=FF:0101035 | ||
|fonse_cell_line_closure=FF:0101035 | |fonse_cell_line_closure=FF:0101035 | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528T-ALL%2529%2520cell%2520line%253aHPB-ALL.CNhs10746.10429-106D6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528T-ALL%2529%2520cell%2520line%253aHPB-ALL.CNhs10746.10429-106D6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528T-ALL%2529%2520cell%2520line%253aHPB-ALL.CNhs10746.10429-106D6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528T-ALL%2529%2520cell%2520line%253aHPB-ALL.CNhs10746.10429-106D6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528T-ALL%2529%2520cell%2520line%253aHPB-ALL.CNhs10746.10429-106D6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10429-106D6 | |id=FF:10429-106D6 | ||
|is_a=CL:0000084;;EFO:0002091;;FF: | |is_a=CL:0000084;;EFO:0002091;;FF:0000210;;FF:0101952 | ||
|is_obsolete= | |||
|library_id=CNhs10746 | |||
|library_id_phase_based=2:CNhs10746 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10429 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10429 | |||
|name=acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL | |name=acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10746,LSID692,release008,COMPLETED | |profile_hcage=CNhs10746,LSID692,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 79: | ||
|rna_tube_id=106D6 | |rna_tube_id=106D6 | ||
|rna_weight_ug=28.5745 | |rna_weight_ug=28.5745 | ||
|rnaseq_library_id=RDhi10067 | |||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1935 | |sample_cell_catalog=RCB1935 | ||
|sample_cell_line=HPB-ALL | |sample_cell_line=HPB-ALL | ||
| Line 69: | Line 94: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.47791307119137e-281!GO:0043227;membrane-bound organelle;2.41190074993021e-251!GO:0043231;intracellular membrane-bound organelle;5.16038962032333e-251!GO:0043226;organelle;2.56382371762709e-239!GO:0043229;intracellular organelle;7.56383529743576e-239!GO:0044422;organelle part;1.44113370753855e-162!GO:0044446;intracellular organelle part;7.6522694823748e-161!GO:0005634;nucleus;3.69863405628363e-159!GO:0005737;cytoplasm;4.93823052186354e-139!GO:0044237;cellular metabolic process;5.12511818111611e-131!GO:0044238;primary metabolic process;3.91012191048693e-128!GO:0043170;macromolecule metabolic process;3.30141803767756e-124!GO:0032991;macromolecular complex;1.7023990079435e-116!GO:0044428;nuclear part;5.55782232712286e-114!GO:0043283;biopolymer metabolic process;6.12651912002754e-95!GO:0043233;organelle lumen;3.77966555225146e-93!GO:0031974;membrane-enclosed lumen;3.77966555225146e-93!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.44467126775905e-91!GO:0003723;RNA binding;8.17055736642155e-91!GO:0044444;cytoplasmic part;1.86938568266432e-89!GO:0030529;ribonucleoprotein complex;2.90079810894899e-89!GO:0010467;gene expression;9.35953105824827e-78!GO:0031981;nuclear lumen;2.40796581465749e-68!GO:0003676;nucleic acid binding;8.44032699161844e-66!GO:0006396;RNA processing;1.65610117194401e-65!GO:0006259;DNA metabolic process;1.97993879427115e-65!GO:0043234;protein complex;2.70841258715548e-61!GO:0005739;mitochondrion;3.62227778235531e-59!GO:0005515;protein binding;5.52861051054116e-59!GO:0016071;mRNA metabolic process;2.74321406407323e-55!GO:0006412;translation;1.41588915971984e-49!GO:0016070;RNA metabolic process;8.53523543405281e-48!GO:0008380;RNA splicing;1.84439729761223e-47!GO:0006397;mRNA processing;1.99002106003626e-47!GO:0019538;protein metabolic process;1.46697374544967e-44!GO:0005654;nucleoplasm;2.24447018190095e-44!GO:0005840;ribosome;2.02828600606756e-43!GO:0007049;cell cycle;2.22258752151137e-43!GO:0006996;organelle organization and biogenesis;6.04805379721798e-42!GO:0044267;cellular protein metabolic process;6.60202171136036e-42!GO:0044260;cellular macromolecule metabolic process;1.07540443900738e-41!GO:0016043;cellular component organization and biogenesis;8.12032314529534e-41!GO:0033036;macromolecule localization;1.28334523678602e-39!GO:0031967;organelle envelope;3.48727567405355e-39!GO:0044429;mitochondrial part;4.13542443075794e-39!GO:0031975;envelope;7.42663963424694e-39!GO:0043228;non-membrane-bound organelle;1.37882923197455e-38!GO:0043232;intracellular non-membrane-bound organelle;1.37882923197455e-38!GO:0005694;chromosome;4.70405156781986e-38!GO:0000166;nucleotide binding;9.93758443773849e-38!GO:0003735;structural constituent of ribosome;3.01917451343509e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.31540655535469e-37!GO:0031090;organelle membrane;6.96610488646295e-37!GO:0009059;macromolecule biosynthetic process;7.04341135191992e-37!GO:0015031;protein transport;1.30423623723808e-36!GO:0006974;response to DNA damage stimulus;3.81578307326071e-36!GO:0044451;nucleoplasm part;1.66290409190005e-35!GO:0044249;cellular biosynthetic process;9.46324640492372e-35!GO:0005681;spliceosome;1.01915674438656e-34!GO:0008104;protein localization;2.65112950838013e-34!GO:0022402;cell cycle process;5.92422080431361e-34!GO:0065003;macromolecular complex assembly;8.70393768773939e-34!GO:0000278;mitotic cell cycle;9.44001022709631e-34!GO:0009058;biosynthetic process;1.0090234156437e-33!GO:0006281;DNA repair;1.20540615115572e-33!GO:0045184;establishment of protein localization;2.88574777668325e-33!GO:0033279;ribosomal subunit;4.38302538918451e-33!GO:0044427;chromosomal part;2.26648349753759e-32!GO:0051276;chromosome organization and biogenesis;5.7445304792357e-31!GO:0046907;intracellular transport;6.08162410430373e-31!GO:0022403;cell cycle phase;2.02130981759958e-29!GO:0022607;cellular component assembly;3.37867715564399e-29!GO:0000087;M phase of mitotic cell cycle;3.31611203442773e-28!GO:0005829;cytosol;4.35528392637373e-28!GO:0051301;cell division;1.02435921490328e-27!GO:0006886;intracellular protein transport;1.40915824139375e-27!GO:0007067;mitosis;1.69301259133698e-27!GO:0000279;M phase;3.69774114228411e-26!GO:0032553;ribonucleotide binding;6.6121005509715e-26!GO:0032555;purine ribonucleotide binding;6.6121005509715e-26!GO:0005524;ATP binding;7.66992189211797e-26!GO:0006512;ubiquitin cycle;2.22063126451747e-25!GO:0006260;DNA replication;2.76002215562429e-25!GO:0017076;purine nucleotide binding;3.78131559127346e-25!GO:0032559;adenyl ribonucleotide binding;5.73999303797777e-25!GO:0009719;response to endogenous stimulus;7.70297241467189e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.37596894207508e-24!GO:0019866;organelle inner membrane;5.4193511950324e-24!GO:0030554;adenyl nucleotide binding;5.84709512582716e-24!GO:0017111;nucleoside-triphosphatase activity;8.25021239410905e-24!GO:0016462;pyrophosphatase activity;1.31996682619392e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.65980197473602e-23!GO:0016874;ligase activity;1.88765506330726e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.94180181789297e-23!GO:0005730;nucleolus;6.5492908371088e-23!GO:0005740;mitochondrial envelope;8.10609545232538e-23!GO:0006325;establishment and/or maintenance of chromatin architecture;8.26400457560925e-23!GO:0044265;cellular macromolecule catabolic process;4.47303108261905e-22!GO:0006323;DNA packaging;4.89694748917092e-22!GO:0031966;mitochondrial membrane;6.27809797820944e-22!GO:0044445;cytosolic part;6.81595717800128e-22!GO:0016887;ATPase activity;7.97408562269149e-22!GO:0042623;ATPase activity, coupled;8.66874143856185e-22!GO:0022618;protein-RNA complex assembly;1.09509372881009e-21!GO:0005743;mitochondrial inner membrane;2.60093586082046e-21!GO:0051641;cellular localization;5.1325056908409e-21!GO:0051649;establishment of cellular localization;5.7640293974946e-21!GO:0031980;mitochondrial lumen;2.54101846694292e-19!GO:0005759;mitochondrial matrix;2.54101846694292e-19!GO:0006119;oxidative phosphorylation;4.96935495304258e-19!GO:0043412;biopolymer modification;7.2579867170993e-19!GO:0019941;modification-dependent protein catabolic process;9.70118104727761e-19!GO:0043632;modification-dependent macromolecule catabolic process;9.70118104727761e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;9.70118104727761e-19!GO:0006511;ubiquitin-dependent protein catabolic process;1.00157441964168e-18!GO:0015935;small ribosomal subunit;1.3332038514322e-18!GO:0044257;cellular protein catabolic process;2.64005664657306e-18!GO:0004386;helicase activity;5.1238371526156e-18!GO:0008135;translation factor activity, nucleic acid binding;1.07615873804703e-17!GO:0016568;chromatin modification;1.07615873804703e-17!GO:0016604;nuclear body;1.13028083140692e-17!GO:0019222;regulation of metabolic process;1.79562317190318e-17!GO:0031965;nuclear membrane;2.06767825493156e-17!GO:0044455;mitochondrial membrane part;2.73115819957761e-17!GO:0044453;nuclear membrane part;3.15319057825197e-17!GO:0008134;transcription factor binding;3.58977780497816e-17!GO:0009057;macromolecule catabolic process;3.8784437662364e-17!GO:0043285;biopolymer catabolic process;3.94172822954034e-17!GO:0005635;nuclear envelope;4.79519597650982e-17!GO:0006457;protein folding;5.27140268191522e-17!GO:0044248;cellular catabolic process;7.36377233748875e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;1.34446092256732e-16!GO:0000375;RNA splicing, via transesterification reactions;1.34446092256732e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.34446092256732e-16!GO:0012505;endomembrane system;2.4133352818862e-16!GO:0042254;ribosome biogenesis and assembly;5.44959041534669e-16!GO:0006403;RNA localization;5.54139032136829e-16!GO:0050657;nucleic acid transport;6.83521148520662e-16!GO:0051236;establishment of RNA localization;6.83521148520662e-16!GO:0050658;RNA transport;6.83521148520662e-16!GO:0015934;large ribosomal subunit;1.24964262601281e-15!GO:0006464;protein modification process;1.36717116323439e-15!GO:0000775;chromosome, pericentric region;1.52174513009347e-15!GO:0006605;protein targeting;1.80165807795569e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.96552070542597e-15!GO:0006913;nucleocytoplasmic transport;3.42301365335386e-15!GO:0005643;nuclear pore;3.9167100151844e-15!GO:0043687;post-translational protein modification;6.42529506119852e-15!GO:0051169;nuclear transport;7.24850476818057e-15!GO:0051726;regulation of cell cycle;7.27275162642607e-15!GO:0050794;regulation of cellular process;8.71233026603235e-15!GO:0008026;ATP-dependent helicase activity;9.11271813792624e-15!GO:0031323;regulation of cellular metabolic process;1.07154408749665e-14!GO:0000074;regulation of progression through cell cycle;1.08563097163328e-14!GO:0000785;chromatin;1.17135666517375e-14!GO:0005746;mitochondrial respiratory chain;2.47275017491759e-14!GO:0006350;transcription;2.9022362605927e-14!GO:0003743;translation initiation factor activity;2.95782696882058e-14!GO:0051028;mRNA transport;8.77633055147531e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.33259053712837e-13!GO:0006333;chromatin assembly or disassembly;1.40435064443803e-13!GO:0006413;translational initiation;1.6802348112254e-13!GO:0030163;protein catabolic process;1.87117243960916e-13!GO:0006261;DNA-dependent DNA replication;2.60533622166913e-13!GO:0016607;nuclear speck;3.23069775602467e-13!GO:0065004;protein-DNA complex assembly;3.51849049410467e-13!GO:0005819;spindle;3.51849049410467e-13!GO:0005761;mitochondrial ribosome;3.76626555818057e-13!GO:0000313;organellar ribosome;3.76626555818057e-13!GO:0003677;DNA binding;4.65487539743024e-13!GO:0050136;NADH dehydrogenase (quinone) activity;5.16674829024524e-13!GO:0003954;NADH dehydrogenase activity;5.16674829024524e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.16674829024524e-13!GO:0051082;unfolded protein binding;6.38440776014518e-13!GO:0046930;pore complex;9.02766368247779e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.04754281368947e-12!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.71825004444437e-12!GO:0015630;microtubule cytoskeleton;2.92216757689163e-12!GO:0010468;regulation of gene expression;3.41584928088483e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.03299292547794e-12!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.39737034955018e-12!GO:0006446;regulation of translational initiation;9.3532682381071e-12!GO:0032774;RNA biosynthetic process;1.27450480204278e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.31069414383875e-11!GO:0042773;ATP synthesis coupled electron transport;1.31069414383875e-11!GO:0043566;structure-specific DNA binding;1.31888857195731e-11!GO:0065002;intracellular protein transport across a membrane;1.56505432020585e-11!GO:0048770;pigment granule;1.90141590307361e-11!GO:0042470;melanosome;1.90141590307361e-11!GO:0006351;transcription, DNA-dependent;2.02135885218553e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.1803923842669e-11!GO:0005813;centrosome;3.51042921299427e-11!GO:0006310;DNA recombination;3.56875943686204e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.92831074667634e-11!GO:0045271;respiratory chain complex I;3.92831074667634e-11!GO:0005747;mitochondrial respiratory chain complex I;3.92831074667634e-11!GO:0044432;endoplasmic reticulum part;4.33879552032989e-11!GO:0051186;cofactor metabolic process;4.79292504061642e-11!GO:0048193;Golgi vesicle transport;4.79707916435208e-11!GO:0006364;rRNA processing;5.38614665749977e-11!GO:0008639;small protein conjugating enzyme activity;5.53878181860002e-11!GO:0000075;cell cycle checkpoint;6.77347026923821e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.087364609159e-11!GO:0006399;tRNA metabolic process;7.13130950269447e-11!GO:0005815;microtubule organizing center;7.94146118028471e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.61272685548922e-11!GO:0016072;rRNA metabolic process;9.01206082082301e-11!GO:0019787;small conjugating protein ligase activity;1.07981507859673e-10!GO:0004842;ubiquitin-protein ligase activity;1.15033480066475e-10!GO:0003712;transcription cofactor activity;1.2223787355058e-10!GO:0003697;single-stranded DNA binding;1.45486986173632e-10!GO:0006366;transcription from RNA polymerase II promoter;2.54704626825323e-10!GO:0016779;nucleotidyltransferase activity;2.69240468024971e-10!GO:0017038;protein import;4.3044601696314e-10!GO:0009259;ribonucleotide metabolic process;6.83258399029592e-10!GO:0006163;purine nucleotide metabolic process;8.46599936306094e-10!GO:0030532;small nuclear ribonucleoprotein complex;9.0156753635798e-10!GO:0012501;programmed cell death;9.35227896876036e-10!GO:0050789;regulation of biological process;9.53412967465168e-10!GO:0006732;coenzyme metabolic process;1.05437525813341e-09!GO:0045449;regulation of transcription;1.1073989836545e-09!GO:0006915;apoptosis;1.40908331827097e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.78467613376647e-09!GO:0005657;replication fork;1.97314723807792e-09!GO:0006164;purine nucleotide biosynthetic process;2.47554834239036e-09!GO:0007051;spindle organization and biogenesis;2.63281001027312e-09!GO:0008094;DNA-dependent ATPase activity;2.68424304155416e-09!GO:0005783;endoplasmic reticulum;2.88770150187821e-09!GO:0016881;acid-amino acid ligase activity;3.89926181059643e-09!GO:0005667;transcription factor complex;4.18117337425752e-09!GO:0005789;endoplasmic reticulum membrane;4.20792897486141e-09!GO:0009056;catabolic process;4.5668413744097e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.64758295645451e-09!GO:0004812;aminoacyl-tRNA ligase activity;4.64758295645451e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.64758295645451e-09!GO:0016787;hydrolase activity;6.96313312870141e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.22943228509629e-09!GO:0009260;ribonucleotide biosynthetic process;7.36296079869773e-09!GO:0051325;interphase;1.21234611554956e-08!GO:0043038;amino acid activation;1.29967095859376e-08!GO:0006418;tRNA aminoacylation for protein translation;1.29967095859376e-08!GO:0043039;tRNA aminoacylation;1.29967095859376e-08!GO:0006355;regulation of transcription, DNA-dependent;1.52336448991799e-08!GO:0009150;purine ribonucleotide metabolic process;1.56786389770979e-08!GO:0051329;interphase of mitotic cell cycle;1.606307782602e-08!GO:0008219;cell death;1.62165926396696e-08!GO:0016265;death;1.62165926396696e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.02929678810129e-08!GO:0009060;aerobic respiration;2.13258907019363e-08!GO:0032446;protein modification by small protein conjugation;2.4855770190308e-08!GO:0003682;chromatin binding;2.97632457995523e-08!GO:0019829;cation-transporting ATPase activity;3.21137116916765e-08!GO:0006302;double-strand break repair;3.24873730322248e-08!GO:0007059;chromosome segregation;4.14433094822328e-08!GO:0008565;protein transporter activity;4.33006187548295e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.79115102229761e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.9663119505811e-08!GO:0016740;transferase activity;5.13396133632558e-08!GO:0045333;cellular respiration;6.18809028094722e-08!GO:0051246;regulation of protein metabolic process;6.72735908116127e-08!GO:0006793;phosphorus metabolic process;7.29567246649169e-08!GO:0006796;phosphate metabolic process;7.29567246649169e-08!GO:0031497;chromatin assembly;8.22656917032471e-08!GO:0016363;nuclear matrix;8.43650213237734e-08!GO:0016567;protein ubiquitination;9.09136629786296e-08!GO:0051052;regulation of DNA metabolic process;1.00315128043253e-07!GO:0006334;nucleosome assembly;1.15024374078066e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.32337010513552e-07!GO:0051168;nuclear export;1.47072721885551e-07!GO:0000245;spliceosome assembly;1.62658591487832e-07!GO:0003899;DNA-directed RNA polymerase activity;1.86883880720236e-07!GO:0008270;zinc ion binding;1.88741577397959e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.11207144458869e-07!GO:0019899;enzyme binding;2.8341476816104e-07!GO:0016563;transcription activator activity;3.88114658710334e-07!GO:0051170;nuclear import;3.93091093875809e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.17878319845956e-07!GO:0006099;tricarboxylic acid cycle;4.47062169349792e-07!GO:0046356;acetyl-CoA catabolic process;4.47062169349792e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.54053052519568e-07!GO:0016310;phosphorylation;4.66048833119458e-07!GO:0000151;ubiquitin ligase complex;4.68326851018367e-07!GO:0009055;electron carrier activity;4.81709849833842e-07!GO:0006084;acetyl-CoA metabolic process;5.11410806210903e-07!GO:0000776;kinetochore;5.57985191954341e-07!GO:0015986;ATP synthesis coupled proton transport;6.05869033660726e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.05869033660726e-07!GO:0003724;RNA helicase activity;6.08021962693891e-07!GO:0009117;nucleotide metabolic process;6.15029380606526e-07!GO:0006461;protein complex assembly;6.56867441538018e-07!GO:0006606;protein import into nucleus;7.00994819444961e-07!GO:0016741;transferase activity, transferring one-carbon groups;7.3432833860566e-07!GO:0031324;negative regulation of cellular metabolic process;7.73635242178783e-07!GO:0008168;methyltransferase activity;7.93412158409017e-07!GO:0003678;DNA helicase activity;8.6081615030424e-07!GO:0003713;transcription coactivator activity;1.05123985083762e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.14007156106387e-06!GO:0051188;cofactor biosynthetic process;1.16881382392771e-06!GO:0003690;double-stranded DNA binding;1.55906607279947e-06!GO:0007093;mitotic cell cycle checkpoint;1.98933709562554e-06!GO:0005794;Golgi apparatus;2.32782135534807e-06!GO:0042981;regulation of apoptosis;2.67270739935173e-06!GO:0046034;ATP metabolic process;2.74577944809808e-06!GO:0043067;regulation of programmed cell death;3.14380197743448e-06!GO:0009141;nucleoside triphosphate metabolic process;3.25491353099791e-06!GO:0006754;ATP biosynthetic process;3.25491353099791e-06!GO:0006753;nucleoside phosphate metabolic process;3.25491353099791e-06!GO:0045259;proton-transporting ATP synthase complex;3.37366794178945e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.40795892587158e-06!GO:0015399;primary active transmembrane transporter activity;3.40795892587158e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.41501157987951e-06!GO:0009199;ribonucleoside triphosphate metabolic process;3.55871856955094e-06!GO:0006352;transcription initiation;4.23950083868394e-06!GO:0009109;coenzyme catabolic process;4.42822040321915e-06!GO:0006752;group transfer coenzyme metabolic process;4.43599615204128e-06!GO:0004298;threonine endopeptidase activity;4.52250582560191e-06!GO:0009892;negative regulation of metabolic process;4.78282679680589e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.11192274942407e-06!GO:0016564;transcription repressor activity;5.18357692408025e-06!GO:0048523;negative regulation of cellular process;5.2702662206673e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.93030913704018e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.94267130492955e-06!GO:0009142;nucleoside triphosphate biosynthetic process;6.02036429745052e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.02036429745052e-06!GO:0000228;nuclear chromosome;6.49981389770818e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.61548612569458e-06!GO:0003729;mRNA binding;6.9599420218849e-06!GO:0006613;cotranslational protein targeting to membrane;7.19059174485177e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.48603509609871e-06!GO:0009144;purine nucleoside triphosphate metabolic process;7.48603509609871e-06!GO:0000226;microtubule cytoskeleton organization and biogenesis;8.31132105726935e-06!GO:0009108;coenzyme biosynthetic process;8.5469060317564e-06!GO:0007088;regulation of mitosis;9.52314044286085e-06!GO:0051427;hormone receptor binding;9.60066021618059e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.3271076068382e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.3271076068382e-05!GO:0043623;cellular protein complex assembly;1.37225001489255e-05!GO:0045786;negative regulation of progression through cell cycle;1.59339320187578e-05!GO:0006612;protein targeting to membrane;1.71098463270732e-05!GO:0005793;ER-Golgi intermediate compartment;1.77605548034115e-05!GO:0046914;transition metal ion binding;1.8257112666836e-05!GO:0035257;nuclear hormone receptor binding;2.01913952480085e-05!GO:0004518;nuclease activity;2.06675736197363e-05!GO:0007052;mitotic spindle organization and biogenesis;2.11754805237038e-05!GO:0008186;RNA-dependent ATPase activity;2.42574413766621e-05!GO:0015631;tubulin binding;2.61649183081812e-05!GO:0043492;ATPase activity, coupled to movement of substances;2.67968561399362e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;2.74718038632935e-05!GO:0030120;vesicle coat;2.76666684064078e-05!GO:0030662;coated vesicle membrane;2.76666684064078e-05!GO:0016251;general RNA polymerase II transcription factor activity;2.87586997899002e-05!GO:0000922;spindle pole;2.9185239714622e-05!GO:0007005;mitochondrion organization and biogenesis;3.19579327786018e-05!GO:0048475;coated membrane;3.70528957646269e-05!GO:0030117;membrane coat;3.70528957646269e-05!GO:0065007;biological regulation;3.81948971036618e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;4.07223268034415e-05!GO:0032508;DNA duplex unwinding;4.15308457436529e-05!GO:0032392;DNA geometric change;4.15308457436529e-05!GO:0016192;vesicle-mediated transport;4.3964547286995e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;4.83437138524399e-05!GO:0004527;exonuclease activity;5.19775213218316e-05!GO:0006401;RNA catabolic process;5.3801667676919e-05!GO:0051187;cofactor catabolic process;5.60198860218806e-05!GO:0048519;negative regulation of biological process;6.28578114628979e-05!GO:0000819;sister chromatid segregation;6.38900798392027e-05!GO:0006402;mRNA catabolic process;6.87445705258012e-05!GO:0006383;transcription from RNA polymerase III promoter;6.91758514712699e-05!GO:0030880;RNA polymerase complex;7.5324901652015e-05!GO:0006405;RNA export from nucleus;7.82924017994702e-05!GO:0004004;ATP-dependent RNA helicase activity;8.12629940747599e-05!GO:0000070;mitotic sister chromatid segregation;8.52977748592886e-05!GO:0003684;damaged DNA binding;8.88665957341337e-05!GO:0005876;spindle microtubule;0.00011059094322227!GO:0006268;DNA unwinding during replication;0.000121015543312944!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000137562929548616!GO:0000428;DNA-directed RNA polymerase complex;0.000137562929548616!GO:0032259;methylation;0.000141258288094663!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000142541176839236!GO:0005762;mitochondrial large ribosomal subunit;0.0001431081434867!GO:0000315;organellar large ribosomal subunit;0.0001431081434867!GO:0007017;microtubule-based process;0.000164687368848953!GO:0006275;regulation of DNA replication;0.000171837228127866!GO:0044452;nucleolar part;0.000173702228491617!GO:0000082;G1/S transition of mitotic cell cycle;0.000175266989146907!GO:0016853;isomerase activity;0.000190426468141648!GO:0004674;protein serine/threonine kinase activity;0.000191084750405756!GO:0006338;chromatin remodeling;0.000191494632237192!GO:0044450;microtubule organizing center part;0.000195344727590328!GO:0043021;ribonucleoprotein binding;0.000197482861841048!GO:0009165;nucleotide biosynthetic process;0.000231015536697507!GO:0006270;DNA replication initiation;0.000231015536697507!GO:0008017;microtubule binding;0.000238433282093078!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000239891201100361!GO:0006367;transcription initiation from RNA polymerase II promoter;0.000248429743158519!GO:0016481;negative regulation of transcription;0.000266203282427845!GO:0005798;Golgi-associated vesicle;0.000302005044902797!GO:0043681;protein import into mitochondrion;0.000311475206550828!GO:0043596;nuclear replication fork;0.000314898920608264!GO:0000314;organellar small ribosomal subunit;0.000338943311162432!GO:0005763;mitochondrial small ribosomal subunit;0.000338943311162432!GO:0005768;endosome;0.000347845729092005!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000364228138105748!GO:0051053;negative regulation of DNA metabolic process;0.00038066772924213!GO:0006414;translational elongation;0.000395977858969548!GO:0032200;telomere organization and biogenesis;0.00039609261523736!GO:0000723;telomere maintenance;0.00039609261523736!GO:0005684;U2-dependent spliceosome;0.000401543268200559!GO:0000049;tRNA binding;0.000404973964972311!GO:0008276;protein methyltransferase activity;0.000408510835080374!GO:0030521;androgen receptor signaling pathway;0.000423795549747211!GO:0000792;heterochromatin;0.000442950216783946!GO:0015980;energy derivation by oxidation of organic compounds;0.000449160079023259!GO:0005874;microtubule;0.000458584510821797!GO:0003714;transcription corepressor activity;0.000471914424453686!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000473914420493911!GO:0006611;protein export from nucleus;0.000522298617766671!GO:0019900;kinase binding;0.000543025053705739!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000544217813120165!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000560141037773734!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.000564350024413641!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000564541166166733!GO:0004003;ATP-dependent DNA helicase activity;0.000571169650353055!GO:0043414;biopolymer methylation;0.000624275679225072!GO:0042101;T cell receptor complex;0.000664630621510973!GO:0000725;recombinational repair;0.000664877544853682!GO:0000724;double-strand break repair via homologous recombination;0.000664877544853682!GO:0008654;phospholipid biosynthetic process;0.000670206002469042!GO:0051252;regulation of RNA metabolic process;0.000755604003731922!GO:0000059;protein import into nucleus, docking;0.000757047190460459!GO:0031072;heat shock protein binding;0.000830649539045741!GO:0008033;tRNA processing;0.000919197590946024!GO:0009112;nucleobase metabolic process;0.000964628102997851!GO:0030518;steroid hormone receptor signaling pathway;0.00096523454619545!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00097936598998592!GO:0065009;regulation of a molecular function;0.0010265170010191!GO:0031570;DNA integrity checkpoint;0.0011109766695712!GO:0003887;DNA-directed DNA polymerase activity;0.00113668163467667!GO:0048471;perinuclear region of cytoplasm;0.00114845091045246!GO:0006417;regulation of translation;0.00116376398429591!GO:0043069;negative regulation of programmed cell death;0.00118126440216331!GO:0044454;nuclear chromosome part;0.00119059812001417!GO:0035258;steroid hormone receptor binding;0.00119825203326358!GO:0005637;nuclear inner membrane;0.00121743683166107!GO:0000786;nucleosome;0.00124770036764286!GO:0000118;histone deacetylase complex;0.00125290840864675!GO:0005770;late endosome;0.00129170133106219!GO:0000910;cytokinesis;0.00142430912505414!GO:0006916;anti-apoptosis;0.00143105281270937!GO:0016281;eukaryotic translation initiation factor 4F complex;0.001438486184095!GO:0043066;negative regulation of apoptosis;0.00144272734049306!GO:0009124;nucleoside monophosphate biosynthetic process;0.00144301435455475!GO:0009123;nucleoside monophosphate metabolic process;0.00144301435455475!GO:0004576;oligosaccharyl transferase activity;0.00154375218964543!GO:0005885;Arp2/3 protein complex;0.00156419105776452!GO:0006891;intra-Golgi vesicle-mediated transport;0.00158032390998636!GO:0005525;GTP binding;0.00158130198763476!GO:0000793;condensed chromosome;0.00160430121370639!GO:0008250;oligosaccharyl transferase complex;0.00163175573512556!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00166347166190529!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00166347166190529!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00166347166190529!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00166347166190529!GO:0048500;signal recognition particle;0.00167878959397413!GO:0006007;glucose catabolic process;0.0016924797430315!GO:0043601;nuclear replisome;0.00170395970293462!GO:0030894;replisome;0.00170395970293462!GO:0051656;establishment of organelle localization;0.00173663864713243!GO:0000781;chromosome, telomeric region;0.00175094022180252!GO:0046474;glycerophospholipid biosynthetic process;0.0017709812919349!GO:0031124;mRNA 3'-end processing;0.00189331719157827!GO:0006650;glycerophospholipid metabolic process;0.00189916185588303!GO:0045454;cell redox homeostasis;0.00203326281516938!GO:0006144;purine base metabolic process;0.00217477345721855!GO:0022890;inorganic cation transmembrane transporter activity;0.00227867531576246!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00230169961555157!GO:0031577;spindle checkpoint;0.00232188642483602!GO:0046489;phosphoinositide biosynthetic process;0.00241100235580548!GO:0016859;cis-trans isomerase activity;0.0024584645168629!GO:0008156;negative regulation of DNA replication;0.00246472429635591!GO:0019901;protein kinase binding;0.00261017453841831!GO:0019783;small conjugating protein-specific protease activity;0.00264881888313857!GO:0031326;regulation of cellular biosynthetic process;0.00268500589752401!GO:0008312;7S RNA binding;0.00285597211294113!GO:0006607;NLS-bearing substrate import into nucleus;0.00287538023645525!GO:0006818;hydrogen transport;0.0030051204209069!GO:0051539;4 iron, 4 sulfur cluster binding;0.00306944309003116!GO:0051540;metal cluster binding;0.00306944309003116!GO:0051536;iron-sulfur cluster binding;0.00306944309003116!GO:0042393;histone binding;0.00307383455671289!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00312394335855696!GO:0044431;Golgi apparatus part;0.00314612451581872!GO:0005669;transcription factor TFIID complex;0.00318698766415326!GO:0007050;cell cycle arrest;0.00320486015931481!GO:0016788;hydrolase activity, acting on ester bonds;0.00320963044897396!GO:0016279;protein-lysine N-methyltransferase activity;0.00325863849080198!GO:0018024;histone-lysine N-methyltransferase activity;0.00325863849080198!GO:0016278;lysine N-methyltransferase activity;0.00325863849080198!GO:0015992;proton transport;0.00331308712292478!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00337839347153583!GO:0045047;protein targeting to ER;0.00337839347153583!GO:0006091;generation of precursor metabolites and energy;0.00355518909759117!GO:0030384;phosphoinositide metabolic process;0.00359768219710278!GO:0004843;ubiquitin-specific protease activity;0.00363189188777358!GO:0005048;signal sequence binding;0.00378260148267744!GO:0009161;ribonucleoside monophosphate metabolic process;0.00381716402769226!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00381716402769226!GO:0016790;thiolester hydrolase activity;0.00395387364566687!GO:0008139;nuclear localization sequence binding;0.00395976235909896!GO:0016584;nucleosome positioning;0.00397623886890591!GO:0000152;nuclear ubiquitin ligase complex;0.00410817638821937!GO:0051087;chaperone binding;0.00413809832760107!GO:0006595;polyamine metabolic process;0.00424748771159115!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00441178091304351!GO:0019843;rRNA binding;0.00445039522193559!GO:0030663;COPI coated vesicle membrane;0.00454172244297365!GO:0030126;COPI vesicle coat;0.00454172244297365!GO:0043488;regulation of mRNA stability;0.00456940178834489!GO:0043487;regulation of RNA stability;0.00456940178834489!GO:0006406;mRNA export from nucleus;0.00457025501324696!GO:0000018;regulation of DNA recombination;0.00461530414123006!GO:0000287;magnesium ion binding;0.00461954595140697!GO:0040029;regulation of gene expression, epigenetic;0.00464843913618402!GO:0030522;intracellular receptor-mediated signaling pathway;0.00483780102111721!GO:0000077;DNA damage checkpoint;0.00487298014684311!GO:0031123;RNA 3'-end processing;0.0049068055779795!GO:0018196;peptidyl-asparagine modification;0.00501192219413494!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00501192219413494!GO:0007346;regulation of progression through mitotic cell cycle;0.00532054126174669!GO:0003725;double-stranded RNA binding;0.00542791544863722!GO:0004221;ubiquitin thiolesterase activity;0.00542791544863722!GO:0016272;prefoldin complex;0.00545892553275888!GO:0042054;histone methyltransferase activity;0.00545892553275888!GO:0051640;organelle localization;0.00597857352419498!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00597857352419498!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00597857352419498!GO:0000726;non-recombinational repair;0.00648391124258531!GO:0046966;thyroid hormone receptor binding;0.00665474308566498!GO:0005663;DNA replication factor C complex;0.00670192917062603!GO:0001772;immunological synapse;0.00673580320333428!GO:0042802;identical protein binding;0.00690258017497138!GO:0006376;mRNA splice site selection;0.00693487037340244!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00693487037340244!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00694635833856655!GO:0015002;heme-copper terminal oxidase activity;0.00694635833856655!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00694635833856655!GO:0004129;cytochrome-c oxidase activity;0.00694635833856655!GO:0032561;guanyl ribonucleotide binding;0.00701487028105121!GO:0019001;guanyl nucleotide binding;0.00701487028105121!GO:0005788;endoplasmic reticulum lumen;0.00707502217684897!GO:0008408;3'-5' exonuclease activity;0.00714105467337643!GO:0016569;covalent chromatin modification;0.00725364510703823!GO:0022415;viral reproductive process;0.00734172478431629!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.00753912414427628!GO:0048487;beta-tubulin binding;0.00773347655585677!GO:0046112;nucleobase biosynthetic process;0.00797108891319324!GO:0007004;telomere maintenance via telomerase;0.00797108891319324!GO:0003924;GTPase activity;0.00819144145237412!GO:0006730;one-carbon compound metabolic process;0.00845874185030289!GO:0000339;RNA cap binding;0.00858481213066289!GO:0006284;base-excision repair;0.00858914572719173!GO:0051789;response to protein stimulus;0.00864066540251003!GO:0006986;response to unfolded protein;0.00864066540251003!GO:0008234;cysteine-type peptidase activity;0.00902421250261577!GO:0046365;monosaccharide catabolic process;0.00908723758407128!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.00942752320795916!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.00942752320795916!GO:0009126;purine nucleoside monophosphate metabolic process;0.00942752320795916!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.00942752320795916!GO:0050790;regulation of catalytic activity;0.00952673714659252!GO:0051920;peroxiredoxin activity;0.0100482036407152!GO:0030137;COPI-coated vesicle;0.0100688270538222!GO:0008180;signalosome;0.010221755531411!GO:0030496;midbody;0.0103153331287179!GO:0009116;nucleoside metabolic process;0.0107980964190205!GO:0005832;chaperonin-containing T-complex;0.0107990915342215!GO:0006096;glycolysis;0.0111763549187524!GO:0003711;transcription elongation regulator activity;0.0114666411183849!GO:0007010;cytoskeleton organization and biogenesis;0.0117143410532938!GO:0045947;negative regulation of translational initiation;0.0122769194149605!GO:0046982;protein heterodimerization activity;0.0125229745357503!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0125809786120974!GO:0043284;biopolymer biosynthetic process;0.0127213918092866!GO:0051297;centrosome organization and biogenesis;0.0127523569400694!GO:0031023;microtubule organizing center organization and biogenesis;0.0127523569400694!GO:0045815;positive regulation of gene expression, epigenetic;0.0128441880893701!GO:0007006;mitochondrial membrane organization and biogenesis;0.0131924167604696!GO:0004532;exoribonuclease activity;0.0132063016196218!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0132063016196218!GO:0000209;protein polyubiquitination;0.0132063016196218!GO:0006626;protein targeting to mitochondrion;0.013257771656754!GO:0009889;regulation of biosynthetic process;0.013257771656754!GO:0000119;mediator complex;0.0135130048471363!GO:0043065;positive regulation of apoptosis;0.0135130048471363!GO:0006378;mRNA polyadenylation;0.0138341525417818!GO:0006278;RNA-dependent DNA replication;0.0138380865301993!GO:0035267;NuA4 histone acetyltransferase complex;0.0138789542400943!GO:0043189;H4/H2A histone acetyltransferase complex;0.0145541627238283!GO:0043022;ribosome binding;0.0145653577692619!GO:0043068;positive regulation of programmed cell death;0.0148114881356261!GO:0030134;ER to Golgi transport vesicle;0.0149683888980088!GO:0050681;androgen receptor binding;0.0151318735681683!GO:0019320;hexose catabolic process;0.0152510317951204!GO:0000930;gamma-tubulin complex;0.0156233978061839!GO:0005869;dynactin complex;0.0158381173487414!GO:0030176;integral to endoplasmic reticulum membrane;0.0158841852965125!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0159755412705416!GO:0044262;cellular carbohydrate metabolic process;0.0160942966925176!GO:0009451;RNA modification;0.016098122350418!GO:0008022;protein C-terminus binding;0.0161922462137552!GO:0043624;cellular protein complex disassembly;0.0164329018000996!GO:0031647;regulation of protein stability;0.0166891544121088!GO:0008170;N-methyltransferase activity;0.0168753153202106!GO:0016197;endosome transport;0.0170089794348119!GO:0005680;anaphase-promoting complex;0.0171660131506243!GO:0006740;NADPH regeneration;0.0174224953553086!GO:0006098;pentose-phosphate shunt;0.0174224953553086!GO:0006289;nucleotide-excision repair;0.0175504811521715!GO:0033673;negative regulation of kinase activity;0.018004478798091!GO:0006469;negative regulation of protein kinase activity;0.018004478798091!GO:0000139;Golgi membrane;0.0190361751693622!GO:0042770;DNA damage response, signal transduction;0.019096513006252!GO:0004722;protein serine/threonine phosphatase activity;0.019096513006252!GO:0030658;transport vesicle membrane;0.0192522677919829!GO:0000123;histone acetyltransferase complex;0.019278903740577!GO:0009303;rRNA transcription;0.0195346543153128!GO:0016585;chromatin remodeling complex;0.0201775251490616!GO:0051348;negative regulation of transferase activity;0.0203845608298511!GO:0046164;alcohol catabolic process;0.0208060896509686!GO:0000178;exosome (RNase complex);0.0208763716713842!GO:0030127;COPII vesicle coat;0.0208763716713842!GO:0012507;ER to Golgi transport vesicle membrane;0.0208763716713842!GO:0046483;heterocycle metabolic process;0.0209113240384638!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0209370424137427!GO:0016791;phosphoric monoester hydrolase activity;0.020997256044482!GO:0008097;5S rRNA binding;0.0211385213518198!GO:0000790;nuclear chromatin;0.0214786132615116!GO:0046983;protein dimerization activity;0.0215417162335203!GO:0008536;Ran GTPase binding;0.0217593791709432!GO:0008213;protein amino acid alkylation;0.0218988018611346!GO:0006479;protein amino acid methylation;0.0218988018611346!GO:0006301;postreplication repair;0.0221424722053283!GO:0045892;negative regulation of transcription, DNA-dependent;0.0224624782192266!GO:0019867;outer membrane;0.022929788742231!GO:0006497;protein amino acid lipidation;0.0229921537993463!GO:0005652;nuclear lamina;0.0231048839708617!GO:0031968;organelle outer membrane;0.0233738392582344!GO:0033116;ER-Golgi intermediate compartment membrane;0.0237369431402969!GO:0033170;DNA-protein loading ATPase activity;0.0239946326670033!GO:0003689;DNA clamp loader activity;0.0239946326670033!GO:0032039;integrator complex;0.0239946326670033!GO:0016407;acetyltransferase activity;0.0242385055060339!GO:0005092;GDP-dissociation inhibitor activity;0.0249160780905411!GO:0000731;DNA synthesis during DNA repair;0.0250398703351195!GO:0032984;macromolecular complex disassembly;0.0252400442976077!GO:0016570;histone modification;0.0254490644268743!GO:0043550;regulation of lipid kinase activity;0.0254675425252656!GO:0006506;GPI anchor biosynthetic process;0.0254675425252656!GO:0051059;NF-kappaB binding;0.0278291832203766!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0278477611063856!GO:0022411;cellular component disassembly;0.0280974520058725!GO:0005658;alpha DNA polymerase:primase complex;0.0280974520058725!GO:0006505;GPI anchor metabolic process;0.0282354248441101!GO:0044440;endosomal part;0.0282354248441101!GO:0010008;endosome membrane;0.0282354248441101!GO:0007098;centrosome cycle;0.0285741263649814!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0287851628865453!GO:0042608;T cell receptor binding;0.0292776340752144!GO:0007021;tubulin folding;0.0293038949654935!GO:0016301;kinase activity;0.029522832912539!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0296281703228611!GO:0006672;ceramide metabolic process;0.0296303627039385!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0296338267568408!GO:0016605;PML body;0.0297816518508327!GO:0004523;ribonuclease H activity;0.0299434712759164!GO:0030867;rough endoplasmic reticulum membrane;0.0299682958153282!GO:0006304;DNA modification;0.030000271109577!GO:0047485;protein N-terminus binding;0.0302725850461655!GO:0031970;organelle envelope lumen;0.0304555017817796!GO:0051320;S phase;0.031800359654268!GO:0005881;cytoplasmic microtubule;0.032035727241606!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0320497062673148!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0320497062673148!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0320497062673148!GO:0046426;negative regulation of JAK-STAT cascade;0.0323088588828064!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0324740860643081!GO:0005487;nucleocytoplasmic transporter activity;0.0327232460200281!GO:0005521;lamin binding;0.0327455871363498!GO:0031625;ubiquitin protein ligase binding;0.0329084614005832!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0329186598296504!GO:0009113;purine base biosynthetic process;0.0333801905653674!GO:0042809;vitamin D receptor binding;0.0335725171277752!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.03377997178274!GO:0050000;chromosome localization;0.0338177081591311!GO:0051303;establishment of chromosome localization;0.0338177081591311!GO:0008538;proteasome activator activity;0.0339718903307083!GO:0030174;regulation of DNA replication initiation;0.0346763288484404!GO:0006839;mitochondrial transport;0.034850817519953!GO:0044438;microbody part;0.0349515807931353!GO:0044439;peroxisomal part;0.0349515807931353!GO:0006400;tRNA modification;0.0349590850883139!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0349983456183479!GO:0030261;chromosome condensation;0.0349983456183479!GO:0042026;protein refolding;0.0352278216620844!GO:0045893;positive regulation of transcription, DNA-dependent;0.0360250804048592!GO:0019752;carboxylic acid metabolic process;0.0362301520526098!GO:0019210;kinase inhibitor activity;0.0362974623685535!GO:0030660;Golgi-associated vesicle membrane;0.0366027465960067!GO:0006520;amino acid metabolic process;0.0369828840524574!GO:0017056;structural constituent of nuclear pore;0.0369828840524574!GO:0043241;protein complex disassembly;0.0370163722124048!GO:0001832;blastocyst growth;0.0372266136430785!GO:0004239;methionyl aminopeptidase activity;0.0372747395097859!GO:0007076;mitotic chromosome condensation;0.0374011914077494!GO:0005784;translocon complex;0.0381885973337341!GO:0008632;apoptotic program;0.0384587137851879!GO:0003746;translation elongation factor activity;0.0384587137851879!GO:0048524;positive regulation of viral reproduction;0.0384587137851879!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0386748291088033!GO:0001824;blastocyst development;0.0386836581711229!GO:0050662;coenzyme binding;0.0387276112139256!GO:0043631;RNA polyadenylation;0.0387276112139256!GO:0017134;fibroblast growth factor binding;0.0388630009739111!GO:0009081;branched chain family amino acid metabolic process;0.0391537270119051!GO:0051235;maintenance of localization;0.0399261506217528!GO:0046128;purine ribonucleoside metabolic process;0.0405256884264231!GO:0042278;purine nucleoside metabolic process;0.0405256884264231!GO:0000096;sulfur amino acid metabolic process;0.0405539880010521!GO:0004659;prenyltransferase activity;0.0407300231536102!GO:0006303;double-strand break repair via nonhomologous end joining;0.0407390745060165!GO:0045502;dynein binding;0.0420171676758847!GO:0046519;sphingoid metabolic process;0.0424135264199351!GO:0031903;microbody membrane;0.0424315196657516!GO:0005778;peroxisomal membrane;0.0424315196657516!GO:0003702;RNA polymerase II transcription factor activity;0.042748232796589!GO:0005689;U12-dependent spliceosome;0.043051392213385!GO:0005769;early endosome;0.0430541020690394!GO:0007243;protein kinase cascade;0.0435324111868887!GO:0006950;response to stress;0.0437027805995384!GO:0030118;clathrin coat;0.0438239718563592!GO:0008143;poly(A) binding;0.0438616097468942!GO:0019206;nucleoside kinase activity;0.0440455651325336!GO:0033261;regulation of progression through S phase;0.0444700409162654!GO:0004860;protein kinase inhibitor activity;0.044626565599959!GO:0004520;endodeoxyribonuclease activity;0.0465046624537115!GO:0000777;condensed chromosome kinetochore;0.0470251263387248!GO:0000779;condensed chromosome, pericentric region;0.0470251263387248!GO:0008299;isoprenoid biosynthetic process;0.0478693993366175!GO:0005741;mitochondrial outer membrane;0.048085386214046!GO:0032153;cell division site;0.0481944809906023!GO:0032155;cell division site part;0.0481944809906023!GO:0000738;DNA catabolic process, exonucleolytic;0.0481944809906023!GO:0000062;acyl-CoA binding;0.048320408846647!GO:0006266;DNA ligation;0.0484650897001749!GO:0006596;polyamine biosynthetic process;0.0488621239053795!GO:0007265;Ras protein signal transduction;0.049450355213682!GO:0004402;histone acetyltransferase activity;0.0494882258086381!GO:0004468;lysine N-acetyltransferase activity;0.0494882258086381!GO:0030258;lipid modification;0.0498415995346721!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.049923488955677 | |||
|sample_id=10429 | |sample_id=10429 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 102: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=MYB:2.68746035829;E2F1..5:2.23062862167;PDX1:1.88215133537;NFY{A,B,C}:1.87122882705;BREu{core}:1.71017743814;ZBTB16:1.52095812613;BPTF:1.5137421834;RORA:1.50783100498;CDX1,2,4:1.46447782174;ZNF143:1.42998307881;POU1F1:1.40354324123;DMAP1_NCOR{1,2}_SMARC:1.37842590613;FOXA2:1.37169274704;RUNX1..3:1.33431135631;TFDP1:1.32277998726;NRF1:1.3032818506;PAX8:1.28454306788;ELK1,4_GABP{A,B1}:1.23318994471;NANOG:1.22669560717;YY1:1.21521226919;T:1.17498914798;NKX2-1,4:1.16516910319;PAX3,7:1.15030855347;FOXP1:1.14193200255;ELF1,2,4:1.14001135589;IKZF2:1.09426495967;NR5A1,2:1.0756295432;RBPJ:0.962017955703;PAX6:0.938394704046;STAT1,3:0.934849105231;PITX1..3:0.927921849902;FOXP3:0.912736290317;LEF1_TCF7_TCF7L1,2:0.906543032647;SPZ1:0.879975136364;AIRE:0.869668908703;EVI1:0.849454581102;PBX1:0.834052362523;PAX4:0.807645790647;FOX{I1,J2}:0.738502344536;GATA6:0.735517157462;SOX5:0.668718476621;HBP1_HMGB_SSRP1_UBTF:0.655899873994;NKX6-1,2:0.655699194946;GFI1:0.630255879176;MYOD1:0.616039768449;TEF:0.59543403097;CUX2:0.588015685657;ZEB1:0.580053230233;RREB1:0.535878217337;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.533007497047;SPI1:0.530075705393;SOX17:0.518732998484;HES1:0.516698349197;HOXA9_MEIS1:0.50264456086;CRX:0.426360357327;SOX{8,9,10}:0.421865001999;ETS1,2:0.366903724255;POU6F1:0.360839066971;EN1,2:0.336098650686;ATF4:0.322443791785;VSX1,2:0.321733781037;POU3F1..4:0.317654530406;POU5F1:0.311318027269;NR1H4:0.310737822718;ZNF384:0.296630981742;HAND1,2:0.291514319126;HOX{A6,A7,B6,B7}:0.276895270226;FOX{F1,F2,J1}:0.26790797808;TOPORS:0.238224604127;CREB1:0.208264013781;SNAI1..3:0.199310029381;SPIB:0.183045428447;AR:0.164014279364;RFX2..5_RFXANK_RFXAP:0.162574131733;LMO2:0.161840180715;ATF5_CREB3:0.13901461825;TGIF1:0.112112601098;POU2F1..3:0.0918114494793;LHX3,4:0.066934882881;FOXD3:0.0665887230483;OCT4_SOX2{dimer}:0.0468203555635;SOX2:0.0223575349644;HMGA1,2:0.00957036999151;ONECUT1,2:-0.0183730177811;PRRX1,2:-0.0281456615043;SREBF1,2:-0.0391256450872;FOXO1,3,4:-0.0746538906995;NKX2-2,8:-0.0844365039968;NKX2-3_NKX2-5:-0.0952385413431;SMAD1..7,9:-0.112481062463;ZNF148:-0.115604940558;FOXQ1:-0.119507660867;bHLH_family:-0.143685733881;CDC5L:-0.161744094405;IRF1,2:-0.161755254053;ALX1:-0.163243841564;TFAP4:-0.172481155721;NKX3-1:-0.205166346497;HOX{A4,D4}:-0.211156310877;HNF4A_NR2F1,2:-0.231501348482;MZF1:-0.237092395546;NFKB1_REL_RELA:-0.245533763035;FOXN1:-0.245813633033;PAX2:-0.26923441003;JUN:-0.321544843648;ADNP_IRX_SIX_ZHX:-0.356010413077;NANOG{mouse}:-0.377950902052;NR3C1:-0.400080783701;HNF1A:-0.400477871141;RFX1:-0.40316192556;ZIC1..3:-0.4134699461;ZFP161:-0.43349437228;GATA4:-0.451187546958;IRF7:-0.45678079169;AHR_ARNT_ARNT2:-0.489204725159;FOX{D1,D2}:-0.490286756548;NFE2:-0.491192355822;STAT5{A,B}:-0.492541229716;TLX2:-0.499399059741;MEF2{A,B,C,D}:-0.504579338762;CEBPA,B_DDIT3:-0.521630041572;MED-1{core}:-0.526078796359;ZNF238:-0.534534473742;FOSL2:-0.537354507234;PATZ1:-0.547357797921;HLF:-0.555903455518;HOX{A5,B5}:-0.602679005458;EGR1..3:-0.60734170474;ZNF423:-0.616040612256;NFIL3:-0.616482320478;KLF4:-0.618215312911;GCM1,2:-0.627406428481;ARID5B:-0.650002286661;MYFfamily:-0.659195785763;NHLH1,2:-0.666699775718;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.672287145872;UFEwm:-0.677513150575;TAL1_TCF{3,4,12}:-0.681326625055;MYBL2:-0.699209037602;SRF:-0.712092314064;REST:-0.722027744285;FOS_FOS{B,L1}_JUN{B,D}:-0.724368533564;EP300:-0.746752989436;FOXL1:-0.776723231758;MTE{core}:-0.785694635652;MAZ:-0.797053039177;ATF2:-0.807313691704;BACH2:-0.813864672867;DBP:-0.83868498159;RXR{A,B,G}:-0.88327836618;ESRRA:-0.890405969808;HIF1A:-0.899277194106;NKX3-2:-0.933893242933;NFATC1..3:-0.976226654038;GZF1:-0.977010858304;GTF2I:-0.978339713943;TFAP2B:-1.01766813738;FOXM1:-1.02015533126;GTF2A1,2:-1.02133150861;GFI1B:-1.0707543934;NFE2L1:-1.10005709396;PRDM1:-1.10777591246;NR6A1:-1.11429756468;PAX5:-1.11972818707;ZBTB6:-1.1340695268;HIC1:-1.14413277491;MAFB:-1.15217635179;NFE2L2:-1.16857769526;PPARG:-1.17472522949;ALX4:-1.26301331209;IKZF1:-1.27457060386;ESR1:-1.27613292816;TBX4,5:-1.28200481902;TP53:-1.33676093826;XCPE1{core}:-1.34503848072;STAT2,4,6:-1.35362310434;RXRA_VDR{dimer}:-1.37321716108;XBP1:-1.39748249881;HMX1:-1.43559817781;HSF1,2:-1.44496519471;TEAD1:-1.49853857293;TLX1..3_NFIC{dimer}:-1.51395435597;EBF1:-1.53985940415;PAX1,9:-1.63220732185;TBP:-1.73655771923;NFIX:-1.73708918421;MTF1:-1.7566388388;SP1:-1.78733004252;GLI1..3:-1.83421170085;TFCP2:-2.14071501016;ATF6:-2.29134907597;TFAP2{A,C}:-2.3825664674 | |top_motifs=MYB:2.68746035829;E2F1..5:2.23062862167;PDX1:1.88215133537;NFY{A,B,C}:1.87122882705;BREu{core}:1.71017743814;ZBTB16:1.52095812613;BPTF:1.5137421834;RORA:1.50783100498;CDX1,2,4:1.46447782174;ZNF143:1.42998307881;POU1F1:1.40354324123;DMAP1_NCOR{1,2}_SMARC:1.37842590613;FOXA2:1.37169274704;RUNX1..3:1.33431135631;TFDP1:1.32277998726;NRF1:1.3032818506;PAX8:1.28454306788;ELK1,4_GABP{A,B1}:1.23318994471;NANOG:1.22669560717;YY1:1.21521226919;T:1.17498914798;NKX2-1,4:1.16516910319;PAX3,7:1.15030855347;FOXP1:1.14193200255;ELF1,2,4:1.14001135589;IKZF2:1.09426495967;NR5A1,2:1.0756295432;RBPJ:0.962017955703;PAX6:0.938394704046;STAT1,3:0.934849105231;PITX1..3:0.927921849902;FOXP3:0.912736290317;LEF1_TCF7_TCF7L1,2:0.906543032647;SPZ1:0.879975136364;AIRE:0.869668908703;EVI1:0.849454581102;PBX1:0.834052362523;PAX4:0.807645790647;FOX{I1,J2}:0.738502344536;GATA6:0.735517157462;SOX5:0.668718476621;HBP1_HMGB_SSRP1_UBTF:0.655899873994;NKX6-1,2:0.655699194946;GFI1:0.630255879176;MYOD1:0.616039768449;TEF:0.59543403097;CUX2:0.588015685657;ZEB1:0.580053230233;RREB1:0.535878217337;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.533007497047;SPI1:0.530075705393;SOX17:0.518732998484;HES1:0.516698349197;HOXA9_MEIS1:0.50264456086;CRX:0.426360357327;SOX{8,9,10}:0.421865001999;ETS1,2:0.366903724255;POU6F1:0.360839066971;EN1,2:0.336098650686;ATF4:0.322443791785;VSX1,2:0.321733781037;POU3F1..4:0.317654530406;POU5F1:0.311318027269;NR1H4:0.310737822718;ZNF384:0.296630981742;HAND1,2:0.291514319126;HOX{A6,A7,B6,B7}:0.276895270226;FOX{F1,F2,J1}:0.26790797808;TOPORS:0.238224604127;CREB1:0.208264013781;SNAI1..3:0.199310029381;SPIB:0.183045428447;AR:0.164014279364;RFX2..5_RFXANK_RFXAP:0.162574131733;LMO2:0.161840180715;ATF5_CREB3:0.13901461825;TGIF1:0.112112601098;POU2F1..3:0.0918114494793;LHX3,4:0.066934882881;FOXD3:0.0665887230483;OCT4_SOX2{dimer}:0.0468203555635;SOX2:0.0223575349644;HMGA1,2:0.00957036999151;ONECUT1,2:-0.0183730177811;PRRX1,2:-0.0281456615043;SREBF1,2:-0.0391256450872;FOXO1,3,4:-0.0746538906995;NKX2-2,8:-0.0844365039968;NKX2-3_NKX2-5:-0.0952385413431;SMAD1..7,9:-0.112481062463;ZNF148:-0.115604940558;FOXQ1:-0.119507660867;bHLH_family:-0.143685733881;CDC5L:-0.161744094405;IRF1,2:-0.161755254053;ALX1:-0.163243841564;TFAP4:-0.172481155721;NKX3-1:-0.205166346497;HOX{A4,D4}:-0.211156310877;HNF4A_NR2F1,2:-0.231501348482;MZF1:-0.237092395546;NFKB1_REL_RELA:-0.245533763035;FOXN1:-0.245813633033;PAX2:-0.26923441003;JUN:-0.321544843648;ADNP_IRX_SIX_ZHX:-0.356010413077;NANOG{mouse}:-0.377950902052;NR3C1:-0.400080783701;HNF1A:-0.400477871141;RFX1:-0.40316192556;ZIC1..3:-0.4134699461;ZFP161:-0.43349437228;GATA4:-0.451187546958;IRF7:-0.45678079169;AHR_ARNT_ARNT2:-0.489204725159;FOX{D1,D2}:-0.490286756548;NFE2:-0.491192355822;STAT5{A,B}:-0.492541229716;TLX2:-0.499399059741;MEF2{A,B,C,D}:-0.504579338762;CEBPA,B_DDIT3:-0.521630041572;MED-1{core}:-0.526078796359;ZNF238:-0.534534473742;FOSL2:-0.537354507234;PATZ1:-0.547357797921;HLF:-0.555903455518;HOX{A5,B5}:-0.602679005458;EGR1..3:-0.60734170474;ZNF423:-0.616040612256;NFIL3:-0.616482320478;KLF4:-0.618215312911;GCM1,2:-0.627406428481;ARID5B:-0.650002286661;MYFfamily:-0.659195785763;NHLH1,2:-0.666699775718;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.672287145872;UFEwm:-0.677513150575;TAL1_TCF{3,4,12}:-0.681326625055;MYBL2:-0.699209037602;SRF:-0.712092314064;REST:-0.722027744285;FOS_FOS{B,L1}_JUN{B,D}:-0.724368533564;EP300:-0.746752989436;FOXL1:-0.776723231758;MTE{core}:-0.785694635652;MAZ:-0.797053039177;ATF2:-0.807313691704;BACH2:-0.813864672867;DBP:-0.83868498159;RXR{A,B,G}:-0.88327836618;ESRRA:-0.890405969808;HIF1A:-0.899277194106;NKX3-2:-0.933893242933;NFATC1..3:-0.976226654038;GZF1:-0.977010858304;GTF2I:-0.978339713943;TFAP2B:-1.01766813738;FOXM1:-1.02015533126;GTF2A1,2:-1.02133150861;GFI1B:-1.0707543934;NFE2L1:-1.10005709396;PRDM1:-1.10777591246;NR6A1:-1.11429756468;PAX5:-1.11972818707;ZBTB6:-1.1340695268;HIC1:-1.14413277491;MAFB:-1.15217635179;NFE2L2:-1.16857769526;PPARG:-1.17472522949;ALX4:-1.26301331209;IKZF1:-1.27457060386;ESR1:-1.27613292816;TBX4,5:-1.28200481902;TP53:-1.33676093826;XCPE1{core}:-1.34503848072;STAT2,4,6:-1.35362310434;RXRA_VDR{dimer}:-1.37321716108;XBP1:-1.39748249881;HMX1:-1.43559817781;HSF1,2:-1.44496519471;TEAD1:-1.49853857293;TLX1..3_NFIC{dimer}:-1.51395435597;EBF1:-1.53985940415;PAX1,9:-1.63220732185;TBP:-1.73655771923;NFIX:-1.73708918421;MTF1:-1.7566388388;SP1:-1.78733004252;GLI1..3:-1.83421170085;TFCP2:-2.14071501016;ATF6:-2.29134907597;TFAP2{A,C}:-2.3825664674 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10429-106D6;search_select_hide=table117:FF:10429-106D6 | |||
}} | }} | ||
Latest revision as of 14:01, 3 June 2020
| Name: | acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10746 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10746
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10746
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.114 |
| 10 | 10 | 0.0214 |
| 100 | 100 | 0.642 |
| 101 | 101 | 0.245 |
| 102 | 102 | 0.586 |
| 103 | 103 | 0.987 |
| 104 | 104 | 0.756 |
| 105 | 105 | 0.517 |
| 106 | 106 | 0.0624 |
| 107 | 107 | 0.0119 |
| 108 | 108 | 0.272 |
| 109 | 109 | 0.633 |
| 11 | 11 | 0.305 |
| 110 | 110 | 0.899 |
| 111 | 111 | 0.14 |
| 112 | 112 | 0.301 |
| 113 | 113 | 0.8 |
| 114 | 114 | 0.797 |
| 115 | 115 | 0.256 |
| 116 | 116 | 0.598 |
| 117 | 117 | 0.042 |
| 118 | 118 | 0.509 |
| 119 | 119 | 0.969 |
| 12 | 12 | 0.856 |
| 120 | 120 | 0.896 |
| 121 | 121 | 0.477 |
| 122 | 122 | 0.882 |
| 123 | 123 | 4.66501e-4 |
| 124 | 124 | 0.0773 |
| 125 | 125 | 0.342 |
| 126 | 126 | 0.413 |
| 127 | 127 | 0.981 |
| 128 | 128 | 0.187 |
| 129 | 129 | 0.443 |
| 13 | 13 | 0.285 |
| 130 | 130 | 0.335 |
| 131 | 131 | 0.29 |
| 132 | 132 | 0.532 |
| 133 | 133 | 0.281 |
| 134 | 134 | 0.769 |
| 135 | 135 | 0.861 |
| 136 | 136 | 0.334 |
| 137 | 137 | 0.469 |
| 138 | 138 | 0.816 |
| 139 | 139 | 0.853 |
| 14 | 14 | 0.763 |
| 140 | 140 | 0.679 |
| 141 | 141 | 0.324 |
| 142 | 142 | 0.147 |
| 143 | 143 | 0.123 |
| 144 | 144 | 0.524 |
| 145 | 145 | 0.569 |
| 146 | 146 | 0.73 |
| 147 | 147 | 0.0358 |
| 148 | 148 | 0.726 |
| 149 | 149 | 0.047 |
| 15 | 15 | 0.0797 |
| 150 | 150 | 0.994 |
| 151 | 151 | 0.762 |
| 152 | 152 | 0.00446 |
| 153 | 153 | 0.906 |
| 154 | 154 | 0.766 |
| 155 | 155 | 0.0213 |
| 156 | 156 | 0.86 |
| 157 | 157 | 0.467 |
| 158 | 158 | 0.0361 |
| 159 | 159 | 0.635 |
| 16 | 16 | 0.513 |
| 160 | 160 | 0.816 |
| 161 | 161 | 0.0526 |
| 162 | 162 | 0.69 |
| 163 | 163 | 0.447 |
| 164 | 164 | 0.823 |
| 165 | 165 | 0.465 |
| 166 | 166 | 0.73 |
| 167 | 167 | 0.0979 |
| 168 | 168 | 0.947 |
| 169 | 169 | 0.157 |
| 17 | 17 | 0.706 |
| 18 | 18 | 0.785 |
| 19 | 19 | 0.0734 |
| 2 | 2 | 0.39 |
| 20 | 20 | 0.473 |
| 21 | 21 | 0.124 |
| 22 | 22 | 0.376 |
| 23 | 23 | 0.0461 |
| 24 | 24 | 0.95 |
| 25 | 25 | 0.212 |
| 26 | 26 | 0.544 |
| 27 | 27 | 0.906 |
| 28 | 28 | 0.265 |
| 29 | 29 | 0.124 |
| 3 | 3 | 0.422 |
| 30 | 30 | 0.216 |
| 31 | 31 | 0.393 |
| 32 | 32 | 0.00136 |
| 33 | 33 | 0.802 |
| 34 | 34 | 0.402 |
| 35 | 35 | 0.0899 |
| 36 | 36 | 0.243 |
| 37 | 37 | 0.83 |
| 38 | 38 | 0.879 |
| 39 | 39 | 0.0738 |
| 4 | 4 | 0.337 |
| 40 | 40 | 0.468 |
| 41 | 41 | 0.926 |
| 42 | 42 | 0.117 |
| 43 | 43 | 0.939 |
| 44 | 44 | 0.994 |
| 45 | 45 | 0.324 |
| 46 | 46 | 0.435 |
| 47 | 47 | 0.091 |
| 48 | 48 | 0.334 |
| 49 | 49 | 0.0984 |
| 5 | 5 | 0.984 |
| 50 | 50 | 0.719 |
| 51 | 51 | 0.642 |
| 52 | 52 | 0.066 |
| 53 | 53 | 0.473 |
| 54 | 54 | 0.626 |
| 55 | 55 | 0.144 |
| 56 | 56 | 0.744 |
| 57 | 57 | 0.419 |
| 58 | 58 | 0.268 |
| 59 | 59 | 0.366 |
| 6 | 6 | 0.372 |
| 60 | 60 | 0.464 |
| 61 | 61 | 0.166 |
| 62 | 62 | 0.28 |
| 63 | 63 | 0.805 |
| 64 | 64 | 0.404 |
| 65 | 65 | 0.337 |
| 66 | 66 | 0.0075 |
| 67 | 67 | 0.922 |
| 68 | 68 | 0.0586 |
| 69 | 69 | 0.784 |
| 7 | 7 | 0.264 |
| 70 | 70 | 0.962 |
| 71 | 71 | 0.396 |
| 72 | 72 | 0.615 |
| 73 | 73 | 0.0156 |
| 74 | 74 | 0.133 |
| 75 | 75 | 0.0333 |
| 76 | 76 | 0.692 |
| 77 | 77 | 0.0133 |
| 78 | 78 | 0.257 |
| 79 | 79 | 0.193 |
| 8 | 8 | 0.908 |
| 80 | 80 | 0.229 |
| 81 | 81 | 0.94 |
| 82 | 82 | 0.228 |
| 83 | 83 | 0.665 |
| 84 | 84 | 0.675 |
| 85 | 85 | 0.0105 |
| 86 | 86 | 0.674 |
| 87 | 87 | 0.733 |
| 88 | 88 | 0.601 |
| 89 | 89 | 0.243 |
| 9 | 9 | 0.573 |
| 90 | 90 | 0.0485 |
| 91 | 91 | 0.38 |
| 92 | 92 | 0.328 |
| 93 | 93 | 0.911 |
| 94 | 94 | 0.167 |
| 95 | 95 | 0.7 |
| 96 | 96 | 0.262 |
| 97 | 97 | 0.357 |
| 98 | 98 | 0.807 |
| 99 | 99 | 0.138 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10746
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000084 T cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101952 HPB-ALL cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000084 (T cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100741 (lymphocytic leukemia cell line sample)
0101952 (HPB-ALL cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
