FF:10436-106E4: Difference between revisions

Latest revision as of 14:02, 3 June 2020

Name:	signet ring carcinoma cell line:Kato III
Species:	Human (Homo sapiens)
Library ID:	CNhs10753
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	stomach
dev stage	NA
sex	unknown
age	NA
cell type	unclassifiable
cell line	Kato III
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005478

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10753		CAGE		DRX008002		DRR008874

Accession ID Hg19

Library id		BAM		CTSS
CNhs10753		DRZ000299		DRZ001684

Accession ID Hg38

Library id		BAM		CTSS
CNhs10753		DRZ011649		DRZ013034

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10057		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0402
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.497
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0.832
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-7.531246e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0278
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.112
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.168
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.199
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.297
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.368
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-5.566968e-4
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0188
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.513
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10753

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.409
MA0003.1	MA0003.1	0.935
MA0004.1	MA0004.1	0.00397
MA0006.1	MA0006.1	0.477
MA0007.1	MA0007.1	0.47
MA0009.1	MA0009.1	0.0155
MA0014.1	MA0014.1	0.05
MA0017.1	MA0017.1	7.71166e-4
MA0018.2	MA0018.2	0.356
MA0019.1	MA0019.1	0.249
MA0024.1	MA0024.1	7.29062e-5
MA0025.1	MA0025.1	0.0563
MA0027.1	MA0027.1	0.96
MA0028.1	MA0028.1	1.72707e-4
MA0029.1	MA0029.1	0.123
MA0030.1	MA0030.1	0.156
MA0031.1	MA0031.1	0.0177
MA0035.2	MA0035.2	0.00892
MA0038.1	MA0038.1	8.88441e-6
MA0039.2	MA0039.2	4.37188e-4
MA0040.1	MA0040.1	0.395
MA0041.1	MA0041.1	0.865
MA0042.1	MA0042.1	0.797
MA0043.1	MA0043.1	0.539
MA0046.1	MA0046.1	3.26501e-7
MA0047.2	MA0047.2	8.03824e-5
MA0048.1	MA0048.1	0.537
MA0050.1	MA0050.1	0.00932
MA0051.1	MA0051.1	0.00864
MA0052.1	MA0052.1	0.23
MA0055.1	MA0055.1	0.0037
MA0057.1	MA0057.1	0.647
MA0058.1	MA0058.1	7.47392e-4
MA0059.1	MA0059.1	0.0026
MA0060.1	MA0060.1	8.70942e-11
MA0061.1	MA0061.1	0.734
MA0062.2	MA0062.2	5.08405e-6
MA0065.2	MA0065.2	1.80624e-4
MA0066.1	MA0066.1	0.978
MA0067.1	MA0067.1	0.607
MA0068.1	MA0068.1	0.127
MA0069.1	MA0069.1	0.902
MA0070.1	MA0070.1	0.0359
MA0071.1	MA0071.1	0.659
MA0072.1	MA0072.1	0.916
MA0073.1	MA0073.1	0.932
MA0074.1	MA0074.1	0.656
MA0076.1	MA0076.1	0.00172
MA0077.1	MA0077.1	0.0985
MA0078.1	MA0078.1	0.957
MA0079.2	MA0079.2	0.7
MA0080.2	MA0080.2	0.162
MA0081.1	MA0081.1	0.116
MA0083.1	MA0083.1	9.45172e-5
MA0084.1	MA0084.1	0.647
MA0087.1	MA0087.1	0.862
MA0088.1	MA0088.1	0.0991
MA0090.1	MA0090.1	0.716
MA0091.1	MA0091.1	0.0567
MA0092.1	MA0092.1	0.765
MA0093.1	MA0093.1	0.00339
MA0099.2	MA0099.2	1.13119e-5
MA0100.1	MA0100.1	0.735
MA0101.1	MA0101.1	0.285
MA0102.2	MA0102.2	0.568
MA0103.1	MA0103.1	1.50543e-10
MA0104.2	MA0104.2	0.00303
MA0105.1	MA0105.1	0.373
MA0106.1	MA0106.1	0.833
MA0107.1	MA0107.1	0.392
MA0108.2	MA0108.2	0.0121
MA0111.1	MA0111.1	0.223
MA0112.2	MA0112.2	0.0318
MA0113.1	MA0113.1	0.561
MA0114.1	MA0114.1	3.37396e-5
MA0115.1	MA0115.1	0.00295
MA0116.1	MA0116.1	0.872
MA0117.1	MA0117.1	0.249
MA0119.1	MA0119.1	0.0259
MA0122.1	MA0122.1	0.526
MA0124.1	MA0124.1	0.0964
MA0125.1	MA0125.1	0.0373
MA0131.1	MA0131.1	0.753
MA0135.1	MA0135.1	0.868
MA0136.1	MA0136.1	0.91
MA0137.2	MA0137.2	0.689
MA0138.2	MA0138.2	0.126
MA0139.1	MA0139.1	0.0364
MA0140.1	MA0140.1	0.0699
MA0141.1	MA0141.1	0.0185
MA0142.1	MA0142.1	0.551
MA0143.1	MA0143.1	0.268
MA0144.1	MA0144.1	0.594
MA0145.1	MA0145.1	0.157
MA0146.1	MA0146.1	0.0058
MA0147.1	MA0147.1	0.00415
MA0148.1	MA0148.1	3.19763e-4
MA0149.1	MA0149.1	0.0111
MA0150.1	MA0150.1	0.328
MA0152.1	MA0152.1	0.363
MA0153.1	MA0153.1	2.52539e-6
MA0154.1	MA0154.1	0.76
MA0155.1	MA0155.1	0.43
MA0156.1	MA0156.1	0.256
MA0157.1	MA0157.1	0.192
MA0159.1	MA0159.1	0.0026
MA0160.1	MA0160.1	0.00523
MA0162.1	MA0162.1	0.585
MA0163.1	MA0163.1	0.473
MA0164.1	MA0164.1	0.149
MA0258.1	MA0258.1	0.0917
MA0259.1	MA0259.1	0.152

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10753

Novel motif	Logo	P-value
1	1	0.148
10	10	0.29
100	100	0.534
101	101	0.777
102	102	0.285
103	103	0.903
104	104	0.757
105	105	0.219
106	106	0.343
107	107	0.669
108	108	0.773
109	109	0.0124
11	11	0.343
110	110	0.152
111	111	0.935
112	112	0.943
113	113	0.257
114	114	0.755
115	115	0.794
116	116	0.289
117	117	0.107
118	118	0.332
119	119	0.195
12	12	0.149
120	120	0.467
121	121	0.667
122	122	0.0899
123	123	0.175
124	124	0.471
125	125	0.955
126	126	0.248
127	127	0.561
128	128	0.757
129	129	0.052
13	13	0.00268
130	130	0.681
131	131	0.127
132	132	0.972
133	133	0.0844
134	134	0.433
135	135	0.0352
136	136	0.443
137	137	0.872
138	138	0.614
139	139	0.32
14	14	0.721
140	140	0.228
141	141	0.391
142	142	0.118
143	143	0.379
144	144	0.0947
145	145	0.985
146	146	0.36
147	147	0.783
148	148	0.286
149	149	0.876
15	15	0.169
150	150	0.38
151	151	0.456
152	152	0.773
153	153	0.601
154	154	0.956
155	155	0.561
156	156	0.226
157	157	0.809
158	158	0.461
159	159	0.962
16	16	0.387
160	160	0.56
161	161	0.929
162	162	0.766
163	163	0.719
164	164	0.754
165	165	0.956
166	166	0.437
167	167	0.272
168	168	0.935
169	169	0.012
17	17	0.273
18	18	0.607
19	19	0.816
2	2	0.918
20	20	0.502
21	21	0.989
22	22	0.586
23	23	0.826
24	24	0.0901
25	25	0.454
26	26	0.032
27	27	0.921
28	28	0.504
29	29	0.183
3	3	0.665
30	30	0.758
31	31	0.915
32	32	0.0249
33	33	0.0591
34	34	0.591
35	35	0.721
36	36	0.0339
37	37	0.388
38	38	0.241
39	39	0.463
4	4	0.268
40	40	0.0203
41	41	0.219
42	42	0.547
43	43	0.484
44	44	0.816
45	45	0.976
46	46	0.489
47	47	0.0982
48	48	0.24
49	49	0.263
5	5	0.937
50	50	0.317
51	51	0.894
52	52	0.693
53	53	0.731
54	54	0.969
55	55	0.674
56	56	0.44
57	57	0.292
58	58	0.767
59	59	0.797
6	6	0.674
60	60	0.368
61	61	0.191
62	62	0.8
63	63	0.178
64	64	0.215
65	65	0.578
66	66	2.03208e-4
67	67	0.346
68	68	0.0176
69	69	0.0484
7	7	0.127
70	70	0.626
71	71	0.273
72	72	0.714
73	73	0.247
74	74	0.143
75	75	0.206
76	76	0.407
77	77	0.338
78	78	0.0385
79	79	0.0675
8	8	0.369
80	80	0.564
81	81	0.139
82	82	0.0373
83	83	0.524
84	84	0.414
85	85	0.228
86	86	0.974
87	87	0.0585
88	88	0.868
89	89	0.388
9	9	0.569
90	90	0.618
91	91	0.36
92	92	0.897
93	93	0.0937
94	94	0.611
95	95	0.0466
96	96	0.693
97	97	0.0681
98	98	0.109
99	99	0.717

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10753

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:3493 signet ring cell adenocarcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101092 KATO-III cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002178 (epithelial cell of stomach)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)
3493 (signet ring cell adenocarcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100787 (gastric cancer cell line sample)
0101092 (KATO-III cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
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+|accession_numbers=CAGE;DRX008002;DRR008874;DRZ000299;DRZ001684;DRZ011649;DRZ013034
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
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+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100787,FF:0101092
 |comment=
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 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.23!266.38!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!2.19!154.88!EHF;;chr13:73633131..73633149,+!p1@KLF5!1.72!518.04!KLF5;;chr1:201979743..201979762,+!p1@ELF3!1.72!51.23!ELF3;;chr11:34645791..34645836,+!p3@EHF!1.58!36.90!EHF;;chr21:36421535..36421610,-!p2@RUNX1!1.52!110.52!RUNX1;;chr11:34642656..34642667,+!p2@EHF!1.51!31.60!EHF;;chr19:1753498..1753519,+!p1@ONECUT3!1.51!31.31!ONECUT3;;chr17:70117153..70117174,+!p1@SOX9!1.50!304.17!SOX9;;chr7:63505799..63505904,+!p1@ZNF727!1.47!28.27!ZNF727;;chr17:46675558..46675577,-!p2@HOXB6!1.42!25.42!HOXB6;;chr3:12330560..12330579,+!p1@PPARG!1.40!27.87!PPARG;;chr6:106546808..106546833,+!p3@PRDM1!1.38!28.86!PRDM1;;chr1:209979467..209979494,-!p1@IRF6!1.37!25.32!IRF6;;chr17:46622440..46622477,-!p5@HOXB2!1.33!22.87!HOXB2;;chr19:50432453..50432468,+!p1@ATF5!1.28!982.19!ATF5;;chr1:214161272..214161322,+!p1@PROX1!1.25!23.75!PROX1;;chr1:201979703..201979721,+!p2@ELF3!1.25!16.78!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.25!16.59!GRHL2;;chr20:42984330..42984364,+!p2@HNF4A!1.23!16.10!HNF4A;;chr12:54378923..54378966,+!p1@HOXC10!1.19!14.43!HOXC10;;chr11:2292226..2292270,-!p1@ASCL2!1.18!14.13!ASCL2;;chr17:41622765..41622821,-!p2@ETV4!1.17!21.10!ETV4;;chr17:46667594..46667619,-!p1@HOXB3!1.14!12.96!HOXB3;;chr3:181429704..181429722,+!p1@SOX2!1.14!12.96!SOX2;;chr17:46682321..46682362,-!p1@HOXB6!1.13!12.56!HOXB6;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.13!12.37!ZNF676;;chr11:61520075..61520136,+!p1@C11orf9!1.12!25.81!C11orf9;;chr18:45663490..45663528,-!p2@ZBTB7C!1.12!12.27!ZBTB7C;;chr17:41623692..41623715,-!p1@ETV4!1.11!50.35!ETV4;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.37!PITX1;;chr11:65667846..65667868,-!p1@FOSL1!1.07!287.29!FOSL1;;chr17:46675420..46675465,-!p3@HOXB6!1.07!12.56!HOXB6;;chr12:54380404..54380433,+!p3@HOXC10!1.06!10.60!HOXC10;;chr17:41622925..41622976,-!p3@ETV4!1.05!15.51!ETV4;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.33!HOXB7;;chr8:76319876..76319926,+!p1@HNF4G!1.05!10.21!HNF4G;;chr11:34535297..34535317,-!p1@ELF5!1.05!10.21!ELF5;;chr17:46667628..46667642,-!p2@HOXB3!1.02!9.52!HOXB3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.02!9.52!TFCP2L1;;chr5:174151612..174151633,+!p2@MSX2!1.01!9.32!MSX2;;chr12:54393880..54393962,+!p1@HOXC9!1.01!9.23!HOXC9;;chr3:181429741..181429767,+!p2@SOX2!1.01!9.13!SOX2;;chr1:23857698..23857733,-!p1@E2F2!1.00!16.88!E2F2;;chr17:46622205..46622218,-!p3@HOXB2!1.00!10.40!HOXB2;;chr8:11561684..11561751,+!p1@GATA4!0.99!8.83!GATA4;;chr20:22564895..22564910,-!p1@FOXA2!0.99!8.74!FOXA2;;chr12:52445218..52445237,+!p1@NR4A1!0.98!111.79!NR4A1;;chr19:22193731..22193751,-!p1@ZNF208!0.98!8.64!ZNF208;;chr3:32023232..32023273,+!p1@ZNF860!0.97!12.07!ZNF860;;chr20:18038521..18038571,-!p1@OVOL2!0.97!8.24!OVOL2;;chr9:110252035..110252057,-!p1@KLF4!0.96!134.27!KLF4;;chr5:174151553..174151610,+!p1@MSX2!0.96!13.84!MSX2;;chr20:50159198..50159299,-!p1@NFATC2!0.95!11.68!NFATC2;;chr7:156803329..156803362,-!p1@MNX1!0.95!7.85!MNX1;;chr6:126102292..126102329,+!p3@NCOA7!0.94!26.50!NCOA7;;chr6:106546731..106546755,+!p5@PRDM1!0.92!7.36!PRDM1;;chr16:85932760..85932775,+!p1@IRF8!0.92!7.36!IRF8;;chr5:134369879..134369898,-!p2@PITX1!0.91!7.16!PITX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.90!6.97!HOXC5;;chr6:36355431..36355466,-!p1@ETV7!0.89!6.67!ETV7;;chr11:65667884..65667895,-!p2@FOSL1!0.88!26.80!FOSL1;;chr12:54366894..54366922,+!p2@HOXC11!0.87!6.48!HOXC11;;chr6:106546786..106546802,+!p6@PRDM1!0.87!6.48!PRDM1;;chr11:34535332..34535347,-!p2@ELF5!0.87!6.38!ELF5;;chr21:38071430..38071456,+!p1@SIM2!0.87!6.38!SIM2;;chr17:46622229..46622257,-!p6@HOXB2!0.86!7.46!HOXB2;;chr1:2985760..2985774,+!p1@PRDM16!0.86!6.28!PRDM16;;chr18:19749541..19749557,+!p1@GATA6!0.85!20.22!GATA6;;chr13:73636252..73636307,+!p2@KLF5!0.85!7.26!KLF5;;chr12:77459306..77459365,-!p1@E2F7!0.84!79.89!E2F7;;chr6:31126291..31126399,+!p1@TCF19!0.84!59.58!TCF19;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.99!TBX20;;chr14:75988771..75988826,+!p1@BATF!0.83!7.95!BATF;;chr13:73636516..73636532,+!p3@KLF5!0.83!6.58!KLF5;;chr6:28048343..28048354,+!p1@ZNF165!0.83!5.79!ZNF165;;chr12:54380036..54380091,+!p4@HOXC10!0.82!5.59!HOXC10;;chr18:56532100..56532130,+!p1@ZNF532!0.81!10.60!ZNF532;;chr12:54367122..54367144,+!p4@HOXC11!0.81!5.50!HOXC11;;chr12:2986275..2986363,-!p1@FOXM1!0.80!57.32!FOXM1;;chr17:41622834..41622883,-!p6@ETV4!0.80!6.48!ETV4;;chr6:10412392..10412409,-!p4@TFAP2A!0.80!6.09!TFAP2A;;chr7:17338266..17338282,+!p1@AHR!0.79!60.85!AHR;;chr6:36355513..36355578,-!p2@ETV7!0.79!6.58!ETV7;;chr1:2461692..2461710,-!p1@HES5!0.79!5.20!HES5;;chr13:28494130..28494168,+!p1@PDX1!0.79!5.20!PDX1;;chr12:80084737..80084763,-!p3@PAWR!0.78!20.32!PAWR;;chr12:57914286..57914304,-!p1@DDIT3!0.77!196.30!DDIT3;;chr10:114710098..114710130,+!p2@TCF7L2!0.77!40.63!TCF7L2;;chr11:64764435..64764449,-!p1@BATF2!0.77!6.97!BATF2;;chr20:51588873..51588953,+!p1@TSHZ2!0.77!6.67!TSHZ2;;chr22:38597987..38598021,+!p2@MAFF!0.76!31.90!MAFF;;chr17:41277372..41277418,-!p1@BRCA1!0.76!18.75!BRCA1;;chr12:54366975..54367001,+!p1@HOXC11!0.76!4.71!HOXC11;;chr17:46622070..46622109,-!p1@HOXB2!0.75!10.99!HOXB2;;chr19:50435736..50435781,+!p3@ATF5!0.75!6.67!ATF5;;chr13:73636621..73636647,+!p4@KLF5!0.75!4.61!KLF5;;chr17:46675469..46675481,-!p4@HOXB6!0.75!4.61!HOXB6;;chr22:42229246..42229270,+!p2@SREBF2!0.74!62.72!SREBF2;;chr2:239148671..239148686,-!p1@HES6!0.74!18.06!HES6;;chr20:18037473..18037494,-!p3@OVOL2!0.74!4.51!OVOL2;;chr6:106546834..106546850,+!p4@PRDM1!0.74!4.51!PRDM1;;chr3:185826855..185826911,-!p1@ETV5!0.73!134.37!ETV5;;chr12:2986206..2986258,-!p2@FOXM1!0.73!29.35!FOXM1;;chr7:17338324..17338341,+!p3@AHR!0.73!16.10!AHR;;chr6:1312155..1312187,+!p2@FOXQ1!0.73!4.42!FOXQ1;;chr1:10856694..10856715,-!p3@CASZ1!0.73!4.42!CASZ1;;chr1:209979411..209979433,-!p2@IRF6!0.73!4.42!IRF6;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.32!ETV4;;chr17:7197911..7197964,-!p1@YBX2!0.73!4.32!YBX2;;chr6:126102254..126102289,+!p5@NCOA7!0.72!12.76!NCOA7;;chr17:46621937..46621966,-!p2@HOXB2!0.72!12.47!HOXB2;;chr6:10415484..10415508,-!p3@TFAP2A!0.72!4.22!TFAP2A;;chr6:87923426..87923456,+!p13@ZNF292!0.72!4.22!ZNF292;;chr17:36105042..36105060,-!p1@HNF1B!0.70!4.02!HNF1B;;chr17:46675539..46675551,-!p7@HOXB6!0.69!3.93!HOXB6;;chr13:41593425..41593480,-!p1@ELF1!0.68!27.38!ELF1;;chr14:38064429..38064486,-!p1@FOXA1!0.68!3.83!FOXA1;;chr19:46367576..46367592,+!p1@FOXA3!0.68!3.83!FOXA3;;chr6:10413188..10413249,-!p7@TFAP2A!0.68!3.83!TFAP2A;;chr17:46703942..46703964,-!p4@HOXB9!0.67!3.73!HOXB9;;chr11:34643638..34643667,+!p8@EHF!0.67!3.73!EHF;;chr12:54379136..54379150,+!p4@HOXC5!0.67!3.73!HOXC5;;chr12:54379029..54379057,+!p2@HOXC10!0.67!3.63!HOXC10;;chr17:46806067..46806097,-!p1@HOXB13!0.67!3.63!HOXB13;;chr1:10856639..10856662,-!p2@CASZ1!0.67!3.63!CASZ1;;chr2:171571931..171571959,+!p3@SP5!0.67!3.63!SP5;;chr17:46675619..46675642,-!p5@HOXB6!0.66!3.53!HOXB6;;chr19:13135582..13135600,+!p3@NFIX!0.66!3.53!NFIX;;chr12:54366949..54366973,+!p3@HOXC11!0.66!3.53!HOXC11;;chr6:106534230..106534254,+!p2@PRDM1!0.65!9.72!PRDM1;;chr1:43148855..43148908,+!p4@YBX1!0.65!5.79!YBX1;;chr17:46622114..46622138,-!p4@HOXB2!0.65!5.69!HOXB2;;chr12:66218003..66218018,+!p9@HMGA2!0.65!4.42!HMGA2;;chr17:36105074..36105086,-!p2@HNF1B!0.65!3.44!HNF1B;;chr13:45010939..45011033,-!p1@TSC22D1!0.64!260.20!TSC22D1;;chr7:148581327..148581347,-!p2@EZH2!0.64!12.96!EZH2;;chr22:42229210..42229229,+!p3@SREBF2!0.64!8.74!SREBF2;;chr3:14058794..14058815,+!p1@TPRXL!0.64!3.34!TPRXL;;chr13:27998831..27998851,+!p2@GTF3A!0.63!22.77!GTF3A;;chr19:19729477..19729542,-!p1@PBX4!0.63!7.75!PBX4;;chr1:10754477..10754517,-!p1@CASZ1!0.63!5.89!CASZ1;;chr8:41508327..41508355,-!p1@NKX6-3!0.63!3.24!NKX6-3;;chr3:141087393..141087426,+!p3@ZBTB38!0.62!14.82!ZBTB38;;chr19:21203481..21203504,+!p2@ZNF430!0.62!8.34!ZNF430;;chr1:2985726..2985752,+!p2@PRDM16!0.62!3.14!PRDM16;;chr11:2291814..2291825,-!p2@ASCL2!0.62!3.14!ASCL2;;chr8:102504690..102504704,+!p3@GRHL2!0.62!3.14!GRHL2;;chr6:34204921..34204939,+!p3@HMGA1!0.61!111.60!HMGA1;;chr3:141087339..141087387,+!p2@ZBTB38!0.61!37.89!ZBTB38;;chr9:99180617..99180658,-!p1@ZNF367!0.61!7.66!ZNF367;;chr17:79885633..79885645,-!p4@MAFG!0.61!5.59!MAFG;;chr9:110250697..110250738,-!p2@KLF4!0.61!3.73!KLF4;;chr11:19263160..19263176,-!p1@E2F8!0.61!3.73!E2F8;;chr13:45009301..45009320,-!p7@TSC22D1!0.61!3.04!TSC22D1;;chr17:46132044..46132080,+!p4@NFE2L1!0.61!3.04!NFE2L1;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.04!HOXB7;;chr17:46688334..46688385,-!p1@HOXB7!0.60!4.61!HOXB7;;chr1:151804244..151804310,-!p1@RORC!0.60!2.94!RORC;;chr5:131826457..131826514,-!p1@IRF1!0.59!139.57!IRF1;;chr7:148581360..148581425,-!p1@EZH2!0.59!17.18!EZH2;;chr1:158985493..158985535,+!p4@IFI16!0.59!4.81!IFI16;;chr14:37131058..37131139,+!p1@PAX9!0.59!2.85!PAX9;;chr5:133450458..133450469,+!p4@TCF7!0.59!2.85!TCF7;;chr20:32274179..32274213,-!p1@E2F1!0.58!22.48!E2F1;;chr2:238600933..238600985,+!p3@LRRFIP1!0.58!18.16!LRRFIP1;;chr6:106534192..106534224,+!p1@PRDM1!0.58!9.13!PRDM1;;chr17:79885537..79885554,-!p2@MAFG!0.58!5.99!MAFG;;chr20:32274150..32274166,-!p2@E2F1!0.58!5.79!E2F1;;chr19:22817119..22817145,+!p1@ZNF492!0.58!5.20!ZNF492;;chr12:3068544..3068597,+!p1@TEAD4!0.57!20.02!TEAD4;;chr5:76383070..76383117,-!p3@ZBED3!0.57!6.18!ZBED3;;chr17:38020392..38020477,-!p1@IKZF3!0.57!2.75!IKZF3;;chr6:34204672..34204692,+!p1@HMGA1!0.56!373.27!HMGA1;;chr12:54772960..54773015,-!p3@ZNF385A!0.56!15.41!ZNF385A;;chr5:133450365..133450444,+!p1@TCF7!0.56!14.72!TCF7;;chr1:23857325..23857416,-!p2@E2F2!0.56!3.24!E2F2;;chr20:22565370..22565388,-!p2@FOXA2!0.56!2.65!FOXA2;;chr7:57509877..57509895,+!p1@ZNF716!0.56!2.65!ZNF716;;chr3:12329397..12329433,+!p2@PPARG!0.55!6.67!PPARG;;chr3:185784049..185784050,-!p7@ETV5!0.55!2.55!ETV5;;chr4:38665810..38665827,+!p1@KLF3!0.54!45.84!KLF3;;chr3:52001448..52001478,-!p2@PCBP4!0.54!43.78!PCBP4;;chrX:46404811..46404869,-!p1@ZNF674!0.54!11.09!ZNF674;;chr2:46524897..46524911,+!p2@EPAS1!0.54!8.24!EPAS1;;chr5:76383133..76383186,-!p2@ZBED3!0.54!5.89!ZBED3;;chr19:22235279..22235301,+!p1@ZNF257!0.54!5.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+|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0100787,FF:0101120
 |fonse_cell_line_closure=FF:0100787,FF:0101120
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10436-106E4
-|is_a=DOID:3493;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0101092
+|is_a=DOID:3493;;EFO:0002091;;FF:0000210;;FF:0101092
+|is_obsolete=
+|library_id=CNhs10753
+|library_id_phase_based=2:CNhs10753
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10436
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10436
 |name=signet ring carcinoma cell line:Kato III
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=NCig10057,,,
 |profile_hcage=CNhs10753,LSID692,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=106
 |rna_catalog_number=
@@ Line 54: / Line 76: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=106E4
+|rna_tube_id=1.06E+06
 |rna_weight_ug=21.48075
 |sample_age=
+|sample_category=cell lines
 |sample_cell_catalog=RCB2088
 |sample_cell_line=Kato III
@@ Line 69: / Line 92: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.89538593158501e-242!GO:0043231;intracellular membrane-bound organelle;1.53457243478899e-195!GO:0043227;membrane-bound organelle;3.49316183705476e-195!GO:0043226;organelle;4.18504124794464e-191!GO:0043229;intracellular organelle;7.8870427426606e-191!GO:0005737;cytoplasm;1.24653446986394e-184!GO:0044422;organelle part;3.70229847252644e-161!GO:0044446;intracellular organelle part;8.47638063197903e-160!GO:0044444;cytoplasmic part;5.96643655519592e-133!GO:0032991;macromolecular complex;6.77140681340019e-106!GO:0030529;ribonucleoprotein complex;3.3807269227304e-85!GO:0044237;cellular metabolic process;3.87056856414516e-83!GO:0003723;RNA binding;5.56463672717985e-80!GO:0044428;nuclear part;4.74577177361568e-79!GO:0044238;primary metabolic process;6.72700388780263e-78!GO:0005634;nucleus;1.06572502566744e-75!GO:0043233;organelle lumen;1.76486484904184e-75!GO:0031974;membrane-enclosed lumen;1.76486484904184e-75!GO:0005739;mitochondrion;1.73418815518731e-74!GO:0043170;macromolecule metabolic process;4.9656476753033e-72!GO:0005515;protein binding;6.68007898417302e-61!GO:0043234;protein complex;3.09397349317029e-55!GO:0031090;organelle membrane;9.77490795182744e-55!GO:0006396;RNA processing;3.60244896804022e-54!GO:0044429;mitochondrial part;3.78936322428814e-49!GO:0005840;ribosome;6.79118827428536e-49!GO:0006412;translation;1.04218703604103e-47!GO:0019538;protein metabolic process;1.28471177013165e-45!GO:0031981;nuclear lumen;3.07393526333718e-45!GO:0031967;organelle envelope;9.15037309497497e-45!GO:0031975;envelope;2.24282437999301e-44!GO:0015031;protein transport;9.21308632329566e-44!GO:0016043;cellular component organization and biogenesis;6.52236755577417e-43!GO:0016071;mRNA metabolic process;1.62548395175638e-42!GO:0033036;macromolecule localization;2.19372925806208e-42!GO:0044267;cellular protein metabolic process;6.10743626092472e-42!GO:0003735;structural constituent of ribosome;1.75699268679862e-41!GO:0043283;biopolymer metabolic process;5.72843473108709e-40!GO:0044260;cellular macromolecule metabolic process;5.98753729018924e-40!GO:0045184;establishment of protein localization;9.78504444408299e-40!GO:0008380;RNA splicing;3.92116273844732e-39!GO:0008104;protein localization;1.24665232409358e-38!GO:0009058;biosynthetic process;1.40637091249758e-38!GO:0006397;mRNA processing;2.62547425417689e-38!GO:0006259;DNA metabolic process;4.45984464739996e-38!GO:0005829;cytosol;3.68605144460861e-37!GO:0043228;non-membrane-bound organelle;4.32319444409236e-37!GO:0043232;intracellular non-membrane-bound organelle;4.32319444409236e-37!GO:0009059;macromolecule biosynthetic process;2.86381801747923e-36!GO:0044249;cellular biosynthetic process;7.61147952082381e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.2285869185075e-35!GO:0033279;ribosomal subunit;7.64080259407005e-35!GO:0006996;organelle organization and biogenesis;4.60246576245555e-33!GO:0046907;intracellular transport;7.53374291324271e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.37777893278313e-32!GO:0007049;cell cycle;1.93093349098555e-32!GO:0065003;macromolecular complex assembly;2.67595003620912e-31!GO:0010467;gene expression;6.86170567143493e-31!GO:0005740;mitochondrial envelope;1.72480952063328e-30!GO:0019866;organelle inner membrane;3.04466829026734e-30!GO:0006886;intracellular protein transport;4.56073697906426e-30!GO:0000166;nucleotide binding;9.91253997537046e-30!GO:0031966;mitochondrial membrane;1.50145446594525e-29!GO:0005654;nucleoplasm;2.54963942878816e-28!GO:0005681;spliceosome;4.18187212665319e-28!GO:0005743;mitochondrial inner membrane;1.67765690006203e-27!GO:0022607;cellular component assembly;3.60994071967309e-27!GO:0006974;response to DNA damage stimulus;5.4304181135057e-24!GO:0005694;chromosome;1.78245391919066e-23!GO:0022402;cell cycle process;2.11193558261802e-23!GO:0031980;mitochondrial lumen;2.15504739747572e-23!GO:0005759;mitochondrial matrix;2.15504739747572e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.83702630199331e-23!GO:0000278;mitotic cell cycle;5.75965583540151e-23!GO:0044451;nucleoplasm part;9.6871185656812e-23!GO:0012505;endomembrane system;9.98325391704666e-23!GO:0006119;oxidative phosphorylation;2.76514235474079e-22!GO:0032553;ribonucleotide binding;4.15970562521257e-22!GO:0032555;purine ribonucleotide binding;4.15970562521257e-22!GO:0017076;purine nucleotide binding;4.88100586043505e-22!GO:0051649;establishment of cellular localization;5.44954875797328e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.61346471192015e-22!GO:0016462;pyrophosphatase activity;8.62263511748867e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.1095268331133e-21!GO:0051641;cellular localization;2.02969684560094e-21!GO:0005524;ATP binding;4.37607886830831e-21!GO:0044427;chromosomal part;4.63363367626754e-21!GO:0017111;nucleoside-triphosphatase activity;5.50779845457082e-21!GO:0032559;adenyl ribonucleotide binding;7.63736204441893e-21!GO:0030554;adenyl nucleotide binding;1.57221761777171e-20!GO:0006281;DNA repair;1.70044643653769e-20!GO:0044445;cytosolic part;5.74628697948153e-20!GO:0015935;small ribosomal subunit;1.23117487194386e-19!GO:0044265;cellular macromolecule catabolic process;1.42174696926244e-19!GO:0016874;ligase activity;1.68793720631601e-19!GO:0044455;mitochondrial membrane part;1.9712944828642e-19!GO:0003676;nucleic acid binding;4.77255241373798e-19!GO:0022618;protein-RNA complex assembly;1.20185303935757e-18!GO:0000087;M phase of mitotic cell cycle;1.61432617912975e-18!GO:0005730;nucleolus;2.31587856525577e-18!GO:0007067;mitosis;4.26619486861753e-18!GO:0022403;cell cycle phase;9.0130122595981e-18!GO:0000502;proteasome complex (sensu Eukaryota);1.3284354787315e-17!GO:0051301;cell division;2.61195107577997e-17!GO:0051186;cofactor metabolic process;3.63239099441979e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;3.68492696977899e-17!GO:0019941;modification-dependent protein catabolic process;6.99251110405458e-17!GO:0043632;modification-dependent macromolecule catabolic process;6.99251110405458e-17!GO:0044257;cellular protein catabolic process;9.08538433800972e-17!GO:0005783;endoplasmic reticulum;9.6338630085572e-17!GO:0006260;DNA replication;1.39178503942071e-16!GO:0009719;response to endogenous stimulus;1.43122700069909e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.55265989504503e-16!GO:0006512;ubiquitin cycle;2.19858762879032e-16!GO:0005761;mitochondrial ribosome;2.77739729515344e-16!GO:0000313;organellar ribosome;2.77739729515344e-16!GO:0015934;large ribosomal subunit;2.77739729515344e-16!GO:0044248;cellular catabolic process;3.23653069276845e-16!GO:0051276;chromosome organization and biogenesis;3.73833006054487e-16!GO:0043285;biopolymer catabolic process;4.10425412020136e-16!GO:0005746;mitochondrial respiratory chain;4.45112894903511e-16!GO:0006457;protein folding;4.75841094350473e-16!GO:0008135;translation factor activity, nucleic acid binding;7.35591278034855e-16!GO:0000279;M phase;8.31867909935338e-16!GO:0009057;macromolecule catabolic process;8.37003191994978e-16!GO:0016887;ATPase activity;1.03454945210853e-15!GO:0042623;ATPase activity, coupled;1.28232313292583e-15!GO:0044432;endoplasmic reticulum part;2.00128963777221e-15!GO:0048770;pigment granule;5.49937016058562e-15!GO:0042470;melanosome;5.49937016058562e-15!GO:0006605;protein targeting;6.58112713068805e-15!GO:0042254;ribosome biogenesis and assembly;7.48200669963186e-15!GO:0006732;coenzyme metabolic process;1.02627891842357e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.6334611380869e-14!GO:0005794;Golgi apparatus;2.11346842052481e-14!GO:0005635;nuclear envelope;3.21966057255483e-14!GO:0030163;protein catabolic process;5.29329717056112e-14!GO:0050136;NADH dehydrogenase (quinone) activity;6.3133106579873e-14!GO:0003954;NADH dehydrogenase activity;6.3133106579873e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.3133106579873e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;8.78901984064105e-14!GO:0000375;RNA splicing, via transesterification reactions;8.78901984064105e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.78901984064105e-14!GO:0008134;transcription factor binding;9.89922636285626e-14!GO:0043412;biopolymer modification;3.36686504356236e-13!GO:0003743;translation initiation factor activity;3.36686504356236e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.71540591180919e-13!GO:0016070;RNA metabolic process;6.269152803621e-13!GO:0016604;nuclear body;8.86976102270816e-13!GO:0051082;unfolded protein binding;1.02900495324971e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.37829345541119e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.4381800498043e-12!GO:0031965;nuclear membrane;1.88738960443386e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.96818787473072e-12!GO:0042773;ATP synthesis coupled electron transport;1.96818787473072e-12!GO:0005789;endoplasmic reticulum membrane;3.13710511968077e-12!GO:0048193;Golgi vesicle transport;4.23646079118893e-12!GO:0004386;helicase activity;6.70664271020082e-12!GO:0030964;NADH dehydrogenase complex (quinone);7.09053462892888e-12!GO:0045271;respiratory chain complex I;7.09053462892888e-12!GO:0005747;mitochondrial respiratory chain complex I;7.09053462892888e-12!GO:0044453;nuclear membrane part;8.20880223279453e-12!GO:0016192;vesicle-mediated transport;8.28318995150175e-12!GO:0051726;regulation of cell cycle;9.19967124549735e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.17859005322357e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.353438537331e-11!GO:0000074;regulation of progression through cell cycle;1.35415520269264e-11!GO:0006413;translational initiation;1.3669485954187e-11!GO:0016787;hydrolase activity;1.94018909922171e-11!GO:0006464;protein modification process;2.7381072304279e-11!GO:0006399;tRNA metabolic process;2.93307979011421e-11!GO:0006913;nucleocytoplasmic transport;3.89239849031312e-11!GO:0000785;chromatin;4.38610761881299e-11!GO:0006323;DNA packaging;4.43296140406989e-11!GO:0009055;electron carrier activity;4.43296140406989e-11!GO:0012501;programmed cell death;4.48548582064787e-11!GO:0008026;ATP-dependent helicase activity;4.53575514919637e-11!GO:0006915;apoptosis;5.32335552750536e-11!GO:0051169;nuclear transport;8.15250307365801e-11!GO:0006366;transcription from RNA polymerase II promoter;8.80300007843725e-11!GO:0006446;regulation of translational initiation;1.07753773216369e-10!GO:0008219;cell death;1.6152367368945e-10!GO:0016265;death;1.6152367368945e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.01822844257484e-10!GO:0005768;endosome;3.2376820081941e-10!GO:0008565;protein transporter activity;3.47220931013367e-10!GO:0016607;nuclear speck;3.9269015311455e-10!GO:0045333;cellular respiration;4.36375161671004e-10!GO:0009060;aerobic respiration;7.00391000944076e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.28721323923311e-10!GO:0051188;cofactor biosynthetic process;8.84000547671982e-10!GO:0065004;protein-DNA complex assembly;8.86154284051833e-10!GO:0043687;post-translational protein modification;8.91329590558314e-10!GO:0005643;nuclear pore;9.36496167576756e-10!GO:0006364;rRNA processing;1.0759754548956e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.19567886759996e-09!GO:0016072;rRNA metabolic process;1.36176189122087e-09!GO:0006403;RNA localization;2.314683013903e-09!GO:0009056;catabolic process;2.37078792534093e-09!GO:0009259;ribonucleotide metabolic process;2.46094298900162e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.53853913139874e-09!GO:0004812;aminoacyl-tRNA ligase activity;2.53853913139874e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.53853913139874e-09!GO:0050657;nucleic acid transport;2.92308924516924e-09!GO:0051236;establishment of RNA localization;2.92308924516924e-09!GO:0050658;RNA transport;2.92308924516924e-09!GO:0065002;intracellular protein transport across a membrane;2.93388104532054e-09!GO:0003712;transcription cofactor activity;3.43698367188825e-09!GO:0015986;ATP synthesis coupled proton transport;4.43396557449209e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.43396557449209e-09!GO:0015078;hydrogen ion transmembrane transporter activity;5.23747375499132e-09!GO:0006333;chromatin assembly or disassembly;7.89108367957006e-09!GO:0043038;amino acid activation;7.89732016544791e-09!GO:0006418;tRNA aminoacylation for protein translation;7.89732016544791e-09!GO:0043039;tRNA aminoacylation;7.89732016544791e-09!GO:0006163;purine nucleotide metabolic process;8.0449343355245e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.52453107810234e-09!GO:0009150;purine ribonucleotide metabolic process;2.30102221835702e-08!GO:0009108;coenzyme biosynthetic process;2.3427061985538e-08!GO:0006461;protein complex assembly;2.42869320194064e-08!GO:0007005;mitochondrion organization and biogenesis;2.44860222649007e-08!GO:0005819;spindle;2.44860222649007e-08!GO:0006261;DNA-dependent DNA replication;2.76075114188092e-08!GO:0006752;group transfer coenzyme metabolic process;3.00527998315743e-08!GO:0046034;ATP metabolic process;3.14226163783037e-08!GO:0005657;replication fork;3.76790788018552e-08!GO:0009260;ribonucleotide biosynthetic process;3.89162869854862e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.03578167978968e-08!GO:0006754;ATP biosynthetic process;5.15971512341937e-08!GO:0006753;nucleoside phosphate metabolic process;5.15971512341937e-08!GO:0006164;purine nucleotide biosynthetic process;5.30368065031805e-08!GO:0009141;nucleoside triphosphate metabolic process;5.84722908492483e-08!GO:0017038;protein import;6.74446906994011e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.99920357154629e-08!GO:0008639;small protein conjugating enzyme activity;7.62419634310655e-08!GO:0046930;pore complex;7.97673358345148e-08!GO:0000775;chromosome, pericentric region;9.5016775499964e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.011688605217e-07!GO:0019829;cation-transporting ATPase activity;1.11893543756636e-07!GO:0016779;nucleotidyltransferase activity;1.14636560923866e-07!GO:0019787;small conjugating protein ligase activity;1.18740149879448e-07!GO:0016740;transferase activity;1.18740149879448e-07!GO:0006099;tricarboxylic acid cycle;1.24012737613368e-07!GO:0046356;acetyl-CoA catabolic process;1.24012737613368e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.34626902494348e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.34626902494348e-07!GO:0006084;acetyl-CoA metabolic process;1.39264809637669e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.43407417597792e-07!GO:0004842;ubiquitin-protein ligase activity;1.53177353177944e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.8147614158405e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.8147614158405e-07!GO:0051028;mRNA transport;1.96706596590642e-07!GO:0005793;ER-Golgi intermediate compartment;2.1504938021281e-07!GO:0009109;coenzyme catabolic process;2.63997115069822e-07!GO:0007051;spindle organization and biogenesis;2.66244606243586e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.73857882105395e-07!GO:0015630;microtubule cytoskeleton;2.86303733666017e-07!GO:0043566;structure-specific DNA binding;3.32509333664565e-07!GO:0003724;RNA helicase activity;3.39569471617465e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.57819911827772e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.60929616240656e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.60929616240656e-07!GO:0016568;chromatin modification;4.34584461022917e-07!GO:0004298;threonine endopeptidase activity;4.35644701634022e-07!GO:0005770;late endosome;6.13033119090256e-07!GO:0051187;cofactor catabolic process;6.76298237314136e-07!GO:0000151;ubiquitin ligase complex;7.44605046371134e-07!GO:0016567;protein ubiquitination;7.44605046371134e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.53519816755551e-07!GO:0016881;acid-amino acid ligase activity;7.97778176737924e-07!GO:0000245;spliceosome assembly;8.29293204765335e-07!GO:0005667;transcription factor complex;9.12476527481656e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.28190739100343e-07!GO:0005813;centrosome;1.16775305650286e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.16775305650286e-06!GO:0048475;coated membrane;1.32663750971182e-06!GO:0030117;membrane coat;1.32663750971182e-06!GO:0003697;single-stranded DNA binding;1.43902523507899e-06!GO:0044440;endosomal part;1.43902523507899e-06!GO:0010008;endosome membrane;1.43902523507899e-06!GO:0006793;phosphorus metabolic process;1.46998380304153e-06!GO:0006796;phosphate metabolic process;1.46998380304153e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.58176854196563e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.66416029448989e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.75068847258765e-06!GO:0032446;protein modification by small protein conjugation;1.83905057611796e-06!GO:0045259;proton-transporting ATP synthase complex;2.18979033198087e-06!GO:0005773;vacuole;2.48396467100109e-06!GO:0030120;vesicle coat;3.0724061674386e-06!GO:0030662;coated vesicle membrane;3.0724061674386e-06!GO:0043623;cellular protein complex assembly;3.09220601627547e-06!GO:0044431;Golgi apparatus part;3.3295528547594e-06!GO:0005815;microtubule organizing center;3.40851465592012e-06!GO:0051329;interphase of mitotic cell cycle;4.96504007911066e-06!GO:0006302;double-strand break repair;5.40103440495013e-06!GO:0000323;lytic vacuole;5.76587153912762e-06!GO:0005764;lysosome;5.76587153912762e-06!GO:0006334;nucleosome assembly;7.26997780259128e-06!GO:0006613;cotranslational protein targeting to membrane;9.04773416193042e-06!GO:0051325;interphase;9.60156149144598e-06!GO:0031497;chromatin assembly;1.04078782916801e-05!GO:0000314;organellar small ribosomal subunit;1.26114759387697e-05!GO:0005763;mitochondrial small ribosomal subunit;1.26114759387697e-05!GO:0005762;mitochondrial large ribosomal subunit;1.28961834941174e-05!GO:0000315;organellar large ribosomal subunit;1.28961834941174e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.32861230772896e-05!GO:0015399;primary active transmembrane transporter activity;1.32861230772896e-05!GO:0042981;regulation of apoptosis;1.35748101847197e-05!GO:0051168;nuclear export;1.38240773271922e-05!GO:0045454;cell redox homeostasis;1.43871206145471e-05!GO:0043067;regulation of programmed cell death;1.64408864251823e-05!GO:0003713;transcription coactivator activity;1.65139198410873e-05!GO:0009117;nucleotide metabolic process;1.65139198410873e-05!GO:0007059;chromosome segregation;1.80030396040865e-05!GO:0051427;hormone receptor binding;1.8636981624367e-05!GO:0016563;transcription activator activity;2.06603097890718e-05!GO:0008186;RNA-dependent ATPase activity;2.16571913381252e-05!GO:0016310;phosphorylation;2.35062562444327e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.47701517829927e-05!GO:0051170;nuclear import;2.47701517829927e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.56324823003781e-05!GO:0006091;generation of precursor metabolites and energy;2.7975603105612e-05!GO:0000075;cell cycle checkpoint;2.88836322984303e-05!GO:0051246;regulation of protein metabolic process;3.03270811226559e-05!GO:0016491;oxidoreductase activity;3.54605858786888e-05!GO:0031968;organelle outer membrane;3.84278781710992e-05!GO:0003899;DNA-directed RNA polymerase activity;3.91760784103991e-05!GO:0035257;nuclear hormone receptor binding;4.11758694247888e-05!GO:0019867;outer membrane;4.50469177076441e-05!GO:0006606;protein import into nucleus;4.80189269450734e-05!GO:0005769;early endosome;6.20810120434803e-05!GO:0005741;mitochondrial outer membrane;6.39611973698749e-05!GO:0004004;ATP-dependent RNA helicase activity;6.52658455109909e-05!GO:0043069;negative regulation of programmed cell death;6.52658455109909e-05!GO:0006352;transcription initiation;6.86818356116452e-05!GO:0008654;phospholipid biosynthetic process;7.34566518565338e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.41213164021715e-05!GO:0043021;ribonucleoprotein binding;7.57037745393665e-05!GO:0005798;Golgi-associated vesicle;8.37827861381462e-05!GO:0008094;DNA-dependent ATPase activity;9.80632959855696e-05!GO:0043066;negative regulation of apoptosis;0.000100056311260506!GO:0006612;protein targeting to membrane;0.000100056311260506!GO:0045786;negative regulation of progression through cell cycle;0.000110193319549995!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000116798756305778!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000117483705808383!GO:0000139;Golgi membrane;0.000117848534457043!GO:0051052;regulation of DNA metabolic process;0.000118619370049004!GO:0003729;mRNA binding;0.000119353797063301!GO:0003690;double-stranded DNA binding;0.000149414327056557!GO:0007088;regulation of mitosis;0.000197251903106526!GO:0048523;negative regulation of cellular process;0.00020170538395613!GO:0016251;general RNA polymerase II transcription factor activity;0.000206433836744432!GO:0031988;membrane-bound vesicle;0.000216392327125709!GO:0000786;nucleosome;0.000224785202906305!GO:0016023;cytoplasmic membrane-bound vesicle;0.000227960960948219!GO:0043492;ATPase activity, coupled to movement of substances;0.000243096300783187!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000257008793741921!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00026149161115414!GO:0016564;transcription repressor activity;0.000265067446944462!GO:0000776;kinetochore;0.000273765528745313!GO:0006626;protein targeting to mitochondrion;0.000284171291777142!GO:0005788;endoplasmic reticulum lumen;0.000285869512723675!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000287612917859411!GO:0006916;anti-apoptosis;0.000288742697065863!GO:0006401;RNA catabolic process;0.000289062201543693!GO:0015992;proton transport;0.000307756806141377!GO:0006818;hydrogen transport;0.000324035034199334!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000328993909459803!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000332423565438969!GO:0044452;nucleolar part;0.000356816749423279!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000399938645721749!GO:0007052;mitotic spindle organization and biogenesis;0.000466173758199195!GO:0008033;tRNA processing;0.000499230095407149!GO:0006082;organic acid metabolic process;0.000500633024828363!GO:0005525;GTP binding;0.000507495332384756!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000513125087943008!GO:0019752;carboxylic acid metabolic process;0.000542850712469767!GO:0016853;isomerase activity;0.000543272816081229!GO:0006402;mRNA catabolic process;0.00057558491034885!GO:0007243;protein kinase cascade;0.000578490442950719!GO:0004527;exonuclease activity;0.000641571473272446!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000646415847124276!GO:0003682;chromatin binding;0.000654118702602527!GO:0043681;protein import into mitochondrion;0.000659793945913765!GO:0051252;regulation of RNA metabolic process;0.000660751799798714!GO:0043596;nuclear replication fork;0.000683855733401317!GO:0042802;identical protein binding;0.000733453495831615!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000739648571806077!GO:0050794;regulation of cellular process;0.000858906053215314!GO:0005048;signal sequence binding;0.000864500000506319!GO:0006310;DNA recombination;0.000872884868366753!GO:0022890;inorganic cation transmembrane transporter activity;0.000884959249314286!GO:0065009;regulation of a molecular function;0.000884959249314286!GO:0031982;vesicle;0.00089653164429802!GO:0005774;vacuolar membrane;0.000897730286049808!GO:0050662;coenzyme binding;0.000913689664954205!GO:0006891;intra-Golgi vesicle-mediated transport;0.000941073998075735!GO:0003924;GTPase activity;0.000973025900756372!GO:0003678;DNA helicase activity;0.00100332932571153!GO:0000049;tRNA binding;0.00104762770794244!GO:0033116;ER-Golgi intermediate compartment membrane;0.00104789839735593!GO:0031410;cytoplasmic vesicle;0.00104789839735593!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00105464751377903!GO:0051920;peroxiredoxin activity;0.0011194030019929!GO:0016363;nuclear matrix;0.00114521766359035!GO:0019899;enzyme binding;0.00117678275779597!GO:0030118;clathrin coat;0.00118137337292566!GO:0015980;energy derivation by oxidation of organic compounds;0.0012917598742445!GO:0046474;glycerophospholipid biosynthetic process;0.00132722542071766!GO:0048471;perinuclear region of cytoplasm;0.00133414780630743!GO:0031072;heat shock protein binding;0.00137677405113926!GO:0005885;Arp2/3 protein complex;0.00137723799702951!GO:0046489;phosphoinositide biosynthetic process;0.00151233790852031!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00154840044973309!GO:0005684;U2-dependent spliceosome;0.00156286544049958!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00157396038267813!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00157396038267813!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00157396038267813!GO:0006839;mitochondrial transport;0.00165998926193322!GO:0030880;RNA polymerase complex;0.00178330085017837!GO:0004518;nuclease activity;0.00179023232921191!GO:0031252;leading edge;0.00182297783149632!GO:0043488;regulation of mRNA stability;0.00187195863870865!GO:0043487;regulation of RNA stability;0.00187195863870865!GO:0031902;late endosome membrane;0.00187195863870865!GO:0048500;signal recognition particle;0.00188964648794623!GO:0008632;apoptotic program;0.00196159364430401!GO:0000059;protein import into nucleus, docking;0.00202065893521955!GO:0016272;prefoldin complex;0.00202065893521955!GO:0008637;apoptotic mitochondrial changes;0.00202065893521955!GO:0006650;glycerophospholipid metabolic process;0.00209252196869655!GO:0031324;negative regulation of cellular metabolic process;0.00216162614148493!GO:0006414;translational elongation;0.00218043620280147!GO:0030521;androgen receptor signaling pathway;0.00222337446434044!GO:0005637;nuclear inner membrane;0.00222337446434044!GO:0048519;negative regulation of biological process;0.00227339316092877!GO:0044437;vacuolar part;0.00229414206479365!GO:0030867;rough endoplasmic reticulum membrane;0.00238024894493962!GO:0032508;DNA duplex unwinding;0.00240915352328829!GO:0032392;DNA geometric change;0.00240915352328829!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00250826625639768!GO:0005876;spindle microtubule;0.00258124088468517!GO:0016197;endosome transport;0.00267512165505475!GO:0031124;mRNA 3'-end processing;0.00269551797081011!GO:0030176;integral to endoplasmic reticulum membrane;0.0027102743481031!GO:0006405;RNA export from nucleus;0.0027890371901767!GO:0030119;AP-type membrane coat adaptor complex;0.0027890371901767!GO:0008312;7S RNA binding;0.00280149067665781!GO:0007264;small GTPase mediated signal transduction;0.00284797662352141!GO:0032561;guanyl ribonucleotide binding;0.00286838222787536!GO:0019001;guanyl nucleotide binding;0.00286838222787536!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0030981205924187!GO:0051087;chaperone binding;0.00314194153144008!GO:0008022;protein C-terminus binding;0.00317807725136941!GO:0048522;positive regulation of cellular process;0.00326784199850119!GO:0030131;clathrin adaptor complex;0.00327371244106195!GO:0006268;DNA unwinding during replication;0.00328208476697505!GO:0051540;metal cluster binding;0.00332762115146224!GO:0051536;iron-sulfur cluster binding;0.00332762115146224!GO:0003702;RNA polymerase II transcription factor activity;0.00337810780739715!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00345074921506605!GO:0035258;steroid hormone receptor binding;0.0034535231027569!GO:0009892;negative regulation of metabolic process;0.00353297098532007!GO:0042393;histone binding;0.00356170521573721!GO:0015631;tubulin binding;0.00366680640703564!GO:0051789;response to protein stimulus;0.00367135144300975!GO:0006986;response to unfolded protein;0.00367135144300975!GO:0043601;nuclear replisome;0.00373379849373435!GO:0030894;replisome;0.00373379849373435!GO:0006383;transcription from RNA polymerase III promoter;0.00373379849373435!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00373379849373435!GO:0000428;DNA-directed RNA polymerase complex;0.00373379849373435!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0037792515170833!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00380190974612629!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00380190974612629!GO:0005765;lysosomal membrane;0.00392394256938484!GO:0004576;oligosaccharyl transferase activity;0.00396540571907756!GO:0006950;response to stress;0.00406565747028091!GO:0030384;phosphoinositide metabolic process;0.00406565747028091!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00430864506960198!GO:0045047;protein targeting to ER;0.00430864506960198!GO:0003684;damaged DNA binding;0.00447159426947267!GO:0006270;DNA replication initiation;0.00455826421875181!GO:0016741;transferase activity, transferring one-carbon groups;0.00463871708381432!GO:0007033;vacuole organization and biogenesis;0.00463944622312201!GO:0000725;recombinational repair;0.00464434539827964!GO:0000724;double-strand break repair via homologous recombination;0.00464434539827964!GO:0003714;transcription corepressor activity;0.00466203740487034!GO:0046483;heterocycle metabolic process;0.00472436970021068!GO:0000922;spindle pole;0.00484958839989003!GO:0006611;protein export from nucleus;0.00501194097326703!GO:0030133;transport vesicle;0.00513333160267393!GO:0007040;lysosome organization and biogenesis;0.00513333160267393!GO:0000228;nuclear chromosome;0.00513333160267393!GO:0007093;mitotic cell cycle checkpoint;0.00514738053922326!GO:0008250;oligosaccharyl transferase complex;0.0052876804245799!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0052876804245799!GO:0015002;heme-copper terminal oxidase activity;0.0052876804245799!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0052876804245799!GO:0004129;cytochrome-c oxidase activity;0.0052876804245799!GO:0000070;mitotic sister chromatid segregation;0.00557442818946093!GO:0000287;magnesium ion binding;0.00559526962990591!GO:0008234;cysteine-type peptidase activity;0.005730347175256!GO:0004674;protein serine/threonine kinase activity;0.00593002248924012!GO:0008408;3'-5' exonuclease activity;0.00607595126876708!GO:0008168;methyltransferase activity;0.00607595126876708!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0061729023298837!GO:0009165;nucleotide biosynthetic process;0.00628362795090931!GO:0005669;transcription factor TFIID complex;0.00631031703783578!GO:0030663;COPI coated vesicle membrane;0.00639681333012612!GO:0030126;COPI vesicle coat;0.00639681333012612!GO:0006520;amino acid metabolic process;0.00659535535296041!GO:0016408;C-acyltransferase activity;0.00674975867524691!GO:0048037;cofactor binding;0.00676980278597702!GO:0043022;ribosome binding;0.00676987628219851!GO:0019843;rRNA binding;0.0069313688218559!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00716931388940592!GO:0000819;sister chromatid segregation;0.0074081929416343!GO:0005791;rough endoplasmic reticulum;0.00770658148099477!GO:0048487;beta-tubulin binding;0.00785802147336718!GO:0050790;regulation of catalytic activity;0.00796280688562518!GO:0030658;transport vesicle membrane;0.00798632387153753!GO:0030659;cytoplasmic vesicle membrane;0.00833394687674235!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00839781121675684!GO:0006376;mRNA splice site selection;0.00841202092401975!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00841202092401975!GO:0046467;membrane lipid biosynthetic process;0.00860886149964061!GO:0016126;sterol biosynthetic process;0.00868147067858736!GO:0044438;microbody part;0.0087277511218966!GO:0044439;peroxisomal part;0.0087277511218966!GO:0007017;microtubule-based process;0.00876464796118523!GO:0006118;electron transport;0.00876464796118523!GO:0030518;steroid hormone receptor signaling pathway;0.00880499576513214!GO:0006595;polyamine metabolic process;0.00880499576513214!GO:0016584;nucleosome positioning;0.00884405101302355!GO:0006506;GPI anchor biosynthetic process;0.00891634055680345!GO:0016859;cis-trans isomerase activity;0.00893310953028274!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00918272956068657!GO:0000339;RNA cap binding;0.00918964369916492!GO:0007006;mitochondrial membrane organization and biogenesis;0.00936320113777804!GO:0005663;DNA replication factor C complex;0.00949733567042943!GO:0007010;cytoskeleton organization and biogenesis;0.00956029984101857!GO:0000096;sulfur amino acid metabolic process;0.00957920599682078!GO:0051539;4 iron, 4 sulfur cluster binding;0.00967771082680738!GO:0001711;endodermal cell fate commitment;0.00967771082680738!GO:0030858;positive regulation of epithelial cell differentiation;0.00967771082680738!GO:0031528;microvillus membrane;0.00967771082680738!GO:0001706;endoderm formation;0.00967771082680738!GO:0000082;G1/S transition of mitotic cell cycle;0.0100306013243487!GO:0006338;chromatin remodeling;0.0101221784595466!GO:0031123;RNA 3'-end processing;0.0101392360117123!GO:0031570;DNA integrity checkpoint;0.010156038967765!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0102089286847108!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0104792781816205!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0107344435776988!GO:0005832;chaperonin-containing T-complex;0.0108459484073727!GO:0044433;cytoplasmic vesicle part;0.0109935782571142!GO:0005869;dynactin complex;0.0111551271361446!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0113354652631137!GO:0045045;secretory pathway;0.0113967186565332!GO:0004532;exoribonuclease activity;0.0117173887506546!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0117173887506546!GO:0003756;protein disulfide isomerase activity;0.0117318743667802!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0117318743667802!GO:0005996;monosaccharide metabolic process;0.0117365770090278!GO:0031903;microbody membrane;0.0119144517979599!GO:0005778;peroxisomal membrane;0.0119144517979599!GO:0031647;regulation of protein stability;0.0120583187319577!GO:0046983;protein dimerization activity;0.0123648261649231!GO:0006505;GPI anchor metabolic process;0.0125455523849296!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0126990786877539!GO:0019318;hexose metabolic process;0.0128414938427275!GO:0008180;signalosome;0.0128823469633985!GO:0051287;NAD binding;0.0134327887456554!GO:0004448;isocitrate dehydrogenase activity;0.0139233608909012!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.014204059968184!GO:0006275;regulation of DNA replication;0.0143336234392019!GO:0008139;nuclear localization sequence binding;0.0146966846865012!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0148141343633539!GO:0051338;regulation of transferase activity;0.015776383936654!GO:0005874;microtubule;0.0162256761030656!GO:0032507;maintenance of cellular protein localization;0.0168651008173336!GO:0006497;protein amino acid lipidation;0.017091195456112!GO:0050681;androgen receptor binding;0.0171239431457969!GO:0000738;DNA catabolic process, exonucleolytic;0.0171970888597274!GO:0051053;negative regulation of DNA metabolic process;0.0174839842522251!GO:0030137;COPI-coated vesicle;0.0176506988359075!GO:0030660;Golgi-associated vesicle membrane;0.0177074432205531!GO:0006984;ER-nuclear signaling pathway;0.0180443065213702!GO:0017166;vinculin binding;0.0180668281179794!GO:0012506;vesicle membrane;0.018383029688623!GO:0016301;kinase activity;0.0185966592601707!GO:0006378;mRNA polyadenylation;0.018755076782714!GO:0003746;translation elongation factor activity;0.0189309696912595!GO:0006740;NADPH regeneration;0.0191891172830796!GO:0006098;pentose-phosphate shunt;0.0191891172830796!GO:0008538;proteasome activator activity;0.0196226025009364!GO:0030125;clathrin vesicle coat;0.0203060451392954!GO:0030665;clathrin coated vesicle membrane;0.0203060451392954!GO:0006730;one-carbon compound metabolic process;0.0203060451392954!GO:0030145;manganese ion binding;0.0204450604896543!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0205223464022583!GO:0000152;nuclear ubiquitin ligase complex;0.0205670736147441!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0206747020707891!GO:0030132;clathrin coat of coated pit;0.0218586859129862!GO:0006643;membrane lipid metabolic process;0.0218586859129862!GO:0000178;exosome (RNase complex);0.0219349766366296!GO:0001836;release of cytochrome c from mitochondria;0.0224399661870947!GO:0009967;positive regulation of signal transduction;0.0224399661870947!GO:0007265;Ras protein signal transduction;0.0225050393980253!GO:0006509;membrane protein ectodomain proteolysis;0.0226022289391536!GO:0033619;membrane protein proteolysis;0.0226022289391536!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0228734198547143!GO:0006672;ceramide metabolic process;0.0228734198547143!GO:0000726;non-recombinational repair;0.0228734198547143!GO:0018196;peptidyl-asparagine modification;0.0228734198547143!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0228734198547143!GO:0015036;disulfide oxidoreductase activity;0.0228734198547143!GO:0032200;telomere organization and biogenesis;0.0228749105207906!GO:0000723;telomere maintenance;0.0228749105207906!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0232708886473783!GO:0044262;cellular carbohydrate metabolic process;0.0233012292047678!GO:0003725;double-stranded RNA binding;0.023428779517301!GO:0000118;histone deacetylase complex;0.0236008715361115!GO:0019206;nucleoside kinase activity;0.0236008715361115!GO:0005905;coated pit;0.0236290672947413!GO:0042770;DNA damage response, signal transduction;0.0249472431800477!GO:0030433;ER-associated protein catabolic process;0.0254048305402501!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0254048305402501!GO:0045893;positive regulation of transcription, DNA-dependent;0.0254048305402501!GO:0007034;vacuolar transport;0.0261139890174189!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0267584888572099!GO:0019783;small conjugating protein-specific protease activity;0.0270009779018427!GO:0044450;microtubule organizing center part;0.0270956328774373!GO:0009451;RNA modification;0.0273517717285697!GO:0046966;thyroid hormone receptor binding;0.0273552596520743!GO:0006695;cholesterol biosynthetic process;0.0275307553649883!GO:0016790;thiolester hydrolase activity;0.0275375054566495!GO:0033170;DNA-protein loading ATPase activity;0.0280323291349497!GO:0003689;DNA clamp loader activity;0.0280323291349497!GO:0004003;ATP-dependent DNA helicase activity;0.028200269570797!GO:0043624;cellular protein complex disassembly;0.0282253143165728!GO:0016791;phosphoric monoester hydrolase activity;0.0285403487666644!GO:0045941;positive regulation of transcription;0.0286196718209278!GO:0005083;small GTPase regulator activity;0.028626273931061!GO:0006284;base-excision repair;0.0286964812499444!GO:0030503;regulation of cell redox homeostasis;0.0291107200862193!GO:0051651;maintenance of cellular localization;0.029372205217577!GO:0004540;ribonuclease activity;0.0296812745207762!GO:0007021;tubulin folding;0.0299363056257113!GO:0008017;microtubule binding;0.0301088212359336!GO:0017134;fibroblast growth factor binding;0.0302589294758145!GO:0043549;regulation of kinase activity;0.0306359438803176!GO:0030508;thiol-disulfide exchange intermediate activity;0.0310140233797483!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0314264529972967!GO:0046519;sphingoid metabolic process;0.0314548446085471!GO:0030522;intracellular receptor-mediated signaling pathway;0.0316695017724493!GO:0031901;early endosome membrane;0.0319459950897586!GO:0006892;post-Golgi vesicle-mediated transport;0.0321499185388423!GO:0006007;glucose catabolic process;0.0324952961587392!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0328210813546426!GO:0031529;ruffle organization and biogenesis;0.0328639943993613!GO:0008097;5S rRNA binding;0.0333385181950447!GO:0004843;ubiquitin-specific protease activity;0.0335057676780842!GO:0030968;unfolded protein response;0.0339642540826187!GO:0008320;protein transmembrane transporter activity;0.0344107720114019!GO:0005784;translocon complex;0.0347015592938053!GO:0022406;membrane docking;0.0348934985409477!GO:0048278;vesicle docking;0.0348934985409477!GO:0030134;ER to Golgi transport vesicle;0.0349355197871444!GO:0008610;lipid biosynthetic process;0.036061777654712!GO:0000077;DNA damage checkpoint;0.0365743089849388!GO:0007004;telomere maintenance via telomerase;0.0380976357378896!GO:0032984;macromolecular complex disassembly;0.0385202835152365!GO:0006644;phospholipid metabolic process;0.0385202835152365!GO:0046979;TAP2 binding;0.0385202835152365!GO:0046977;TAP binding;0.0385202835152365!GO:0046978;TAP1 binding;0.0385202835152365!GO:0046365;monosaccharide catabolic process;0.038893201466457!GO:0043154;negative regulation of caspase activity;0.0390624149320748!GO:0003711;transcription elongation regulator activity;0.0391124067543009!GO:0022884;macromolecule transmembrane transporter activity;0.0402457432660507!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0402457432660507!GO:0042158;lipoprotein biosynthetic process;0.0404280107164754!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0405684334046198!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0406064679373179!GO:0005758;mitochondrial intermembrane space;0.0406409551591578!GO:0016044;membrane organization and biogenesis;0.0408592798362336!GO:0009066;aspartate family amino acid metabolic process;0.0412713996996459!GO:0006739;NADP metabolic process;0.0414201685117219!GO:0008629;induction of apoptosis by intracellular signals;0.0415602641339472!GO:0030036;actin cytoskeleton organization and biogenesis;0.0415691508311331!GO:0000793;condensed chromosome;0.0416137825346203!GO:0004680;casein kinase activity;0.0418532724306027!GO:0005658;alpha DNA polymerase:primase complex;0.0418532724306027!GO:0044454;nuclear chromosome part;0.0427055110775767!GO:0030140;trans-Golgi network transport vesicle;0.0428633801351329!GO:0031371;ubiquitin conjugating enzyme complex;0.0437070678914085!GO:0005732;small nucleolar ribonucleoprotein complex;0.043748380531053!GO:0000175;3'-5'-exoribonuclease activity;0.0437949604758678!GO:0004300;enoyl-CoA hydratase activity;0.0440218664842799!GO:0006607;NLS-bearing substrate import into nucleus;0.0442161700137781!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0442161700137781!GO:0006733;oxidoreduction coenzyme metabolic process;0.0448341847820575!GO:0031625;ubiquitin protein ligase binding;0.0450606564968745!GO:0006301;postreplication repair;0.0451372551194501!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0451402819137651!GO:0010257;NADH dehydrogenase complex assembly;0.0451402819137651!GO:0033108;mitochondrial respiratory chain complex assembly;0.0451402819137651!GO:0031056;regulation of histone modification;0.0456126828173728!GO:0006904;vesicle docking during exocytosis;0.0457538751184339!GO:0000086;G2/M transition of mitotic cell cycle;0.0469244388048882!GO:0043189;H4/H2A histone acetyltransferase complex;0.0470950977596789!GO:0006458;'de novo' protein folding;0.0472050621155314!GO:0051084;'de novo' posttranslational protein folding;0.0472050621155314!GO:0030127;COPII vesicle coat;0.047525365116117!GO:0012507;ER to Golgi transport vesicle membrane;0.047525365116117!GO:0040029;regulation of gene expression, epigenetic;0.047577672162232!GO:0004221;ubiquitin thiolesterase activity;0.0486447578594943!GO:0016615;malate dehydrogenase activity;0.0491204094768038!GO:0008156;negative regulation of DNA replication;0.0497588842581271
 |sample_id=10436
 |sample_note=machine failed, remainder reloaded, low amount
@@ Line 76: / Line 100: @@
 |sample_tissue=stomach
 |top_motifs=SNAI1..3:2.37118163781;ZEB1:2.32490651895;LMO2:1.91034968864;MYOD1:1.5969032748;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.55308756344;NR5A1,2:1.39963985022;FOXQ1:1.31631771624;PBX1:1.31396463726;E2F1..5:1.24520362757;HOX{A6,A7,B6,B7}:1.16251674117;FOXA2:1.14427258284;FOX{F1,F2,J1}:1.10288525882;ELK1,4_GABP{A,B1}:1.06953287411;bHLH_family:1.02087411178;SOX2:1.014399706;ADNP_IRX_SIX_ZHX:0.985199604405;NFY{A,B,C}:0.962556016401;FOXD3:0.950323646171;TFDP1:0.878452224957;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.866298074573;PPARG:0.858312324892;LEF1_TCF7_TCF7L1,2:0.840631864031;HNF4A_NR2F1,2:0.832120191267;ZNF148:0.748968224241;SOX{8,9,10}:0.736076342515;XCPE1{core}:0.726494247713;FOXM1:0.620460753927;ESRRA:0.610869288072;GFI1:0.595416725144;NR6A1:0.580124850779;NANOG:0.577367021984;PAX8:0.566883014731;IRF7:0.492861523799;CEBPA,B_DDIT3:0.476867359596;EP300:0.475148334509;NKX2-3_NKX2-5:0.467659651033;MYB:0.444804343741;CDC5L:0.43509883783;FOX{I1,J2}:0.433953862538;NFIX:0.38270223454;VSX1,2:0.363939622374;TLX1..3_NFIC{dimer}:0.359398862564;ONECUT1,2:0.334672986986;PAX2:0.331986896371;OCT4_SOX2{dimer}:0.328161075061;POU2F1..3:0.318472112682;HNF1A:0.30428162132;RBPJ:0.286761144891;CUX2:0.23421584471;PRRX1,2:0.224688762959;SOX5:0.218917738511;POU3F1..4:0.218802663573;PITX1..3:0.20770767111;NKX3-2:0.207614217611;FOS_FOS{B,L1}_JUN{B,D}:0.206249887188;BACH2:0.189469624992;FOXP1:0.187362605152;ATF5_CREB3:0.178741867682;SREBF1,2:0.153814396129;NFIL3:0.14379560386;BPTF:0.14019853297;TEAD1:0.135189399465;MTF1:0.128655379924;TBX4,5:0.127535021715;STAT5{A,B}:0.118210746016;ATF4:0.11140834412;YY1:0.0994749717505;POU5F1:0.0964987247618;HOX{A5,B5}:0.0865411543307;PDX1:0.0853461567351;HLF:0.0791415575143;FOSL2:0.0717162156223;ELF1,2,4:0.0498186308618;NFE2:0.0326428549962;RORA:0.0288987982371;GATA6:0.0237487397436;ARID5B:0.00314890801124;MED-1{core}:-0.00764446939768;FOXN1:-0.00977966724344;NRF1:-0.015690400757;GTF2A1,2:-0.0184806771927;ALX1:-0.0197528153035;BREu{core}:-0.023616571347;TP53:-0.0269057082213;HBP1_HMGB_SSRP1_UBTF:-0.0304452783451;TEF:-0.0384590322228;T:-0.0648633637721;NFE2L2:-0.0702683211434;IRF1,2:-0.0751964324831;ZNF143:-0.111121759419;NKX6-1,2:-0.131638972859;FOX{D1,D2}:-0.141508674862;SP1:-0.148098159327;EN1,2:-0.168751654204;LHX3,4:-0.172834119341;HES1:-0.183674454499;HAND1,2:-0.198878739234;IKZF2:-0.201372330305;STAT2,4,6:-0.219993961854;JUN:-0.247720063848;ZNF423:-0.25220091248;SOX17:-0.263567506587;EVI1:-0.271240514054;NFKB1_REL_RELA:-0.272635260688;MYBL2:-0.291524714159;AHR_ARNT_ARNT2:-0.315835194153;PAX3,7:-0.32543063651;MTE{core}:-0.343582926473;EBF1:-0.364744821782;FOXO1,3,4:-0.365729914183;RFX1:-0.370110334972;RFX2..5_RFXANK_RFXAP:-0.373389765811;ETS1,2:-0.379223135312;ZBTB6:-0.387801768622;DMAP1_NCOR{1,2}_SMARC:-0.400862428424;MEF2{A,B,C,D}:-0.407045779963;ESR1:-0.433855185608;NKX2-1,4:-0.44168748726;NKX2-2,8:-0.445705412853;IKZF1:-0.456999779187;DBP:-0.468538797792;FOXP3:-0.47485292333;PAX4:-0.489019782394;SPIB:-0.494316601765;TFCP2:-0.518477954906;TBP:-0.526391119729;CRX:-0.532105848889;POU6F1:-0.536711541595;TOPORS:-0.542104398063;SPI1:-0.543853073238;PAX5:-0.54489082772;TAL1_TCF{3,4,12}:-0.551576646516;RXRA_VDR{dimer}:-0.56073291739;RUNX1..3:-0.565590541005;NHLH1,2:-0.586791178136;ATF2:-0.609302387568;AR:-0.609694318293;TFAP2B:-0.646088600132;UFEwm:-0.661992061642;ZBTB16:-0.665018553762;AIRE:-0.679213228942;NR1H4:-0.704780046789;GTF2I:-0.722540376828;CDX1,2,4:-0.739654400076;ALX4:-0.744109889732;ZFP161:-0.761500055524;FOXL1:-0.787611104794;PAX1,9:-0.802310545149;POU1F1:-0.829149420351;HOX{A4,D4}:-0.83807012061;REST:-0.861069959948;TLX2:-0.868459999702;HMGA1,2:-0.869938982606;NR3C1:-0.877614115293;NFE2L1:-0.882968403648;PAX6:-0.887078017805;CREB1:-0.896051625069;HIC1:-0.897636255153;HMX1:-0.916936105134;XBP1:-0.927851848888;PRDM1:-0.930130998046;HIF1A:-0.932736041391;MYFfamily:-0.96775619875;RREB1:-0.971055968632;EGR1..3:-0.974215461806;GLI1..3:-0.985879371809;STAT1,3:-1.00197846386;KLF4:-1.06017000389;NKX3-1:-1.06167674228;GFI1B:-1.06638030209;ATF6:-1.11028176012;NANOG{mouse}:-1.13397023979;TGIF1:-1.1639866259;PATZ1:-1.16922236774;GCM1,2:-1.17049654388;MAZ:-1.17650766966;TFAP4:-1.18027462669;GZF1:-1.21898373883;TFAP2{A,C}:-1.26294476329;GATA4:-1.31637788492;MAFB:-1.33160863098;SRF:-1.3345268852;SMAD1..7,9:-1.36046548784;HSF1,2:-1.38716509136;ZNF384:-1.39173290049;ZNF238:-1.39863846949;SPZ1:-1.43102981512;MZF1:-1.47422209486;NFATC1..3:-1.51865963244;ZIC1..3:-1.63661553763;HOXA9_MEIS1:-1.68925760158;RXR{A,B,G}:-1.76833544336
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10436-106E4;search_select_hide=table117:FF:10436-106E4
 }}

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FF:10436-106E4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:02, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0