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{{f5samples
{{f5samples
|id=FF:10437-106E5
|DRA_sample_Accession=CAGE@SAMD00005103
|name=papillary adenocarcinoma cell line:8505C, biol_rep1
|accession_numbers=CAGE;DRX007981;DRR008853;DRZ000278;DRZ001663;DRZ011628;DRZ013013
|sample_id=10437
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002046,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002530,UBERON:0010317,UBERON:0000949
|rna_tube_id=106E5
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|rna_box=106
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305,DOID:299,DOID:3112
|rna_position=E5
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0103209,FF:0101610,FF:0104965
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB2103
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
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F343!0.17!8.35!ZNF343;;chr8:135725249..135725292,-!p1@ZFAT!0.17!7.86!ZFAT;;chr7:64838786..64838809,+!p2@ZNF92!0.17!6.88!ZNF92;;chr2:238600933..238600985,+!p3@LRRFIP1!0.17!6.55!LRRFIP1;;chr3:75834687..75834720,-!p1@ZNF717!0.17!6.06!ZNF717;;chr1:8763440..8763460,-!p2@RERE!0.17!6.06!RERE;;chr2:60780753..60780800,-!p1@BCL11A!0.17!5.90!BCL11A;;chr19:58193338..58193386,+!p1@ZNF551,p2@ZNF776!0.17!5.73!ZNF551;;chr19:44331493..44331552,+!p1@ZNF283!0.17!4.09!ZNF283;;chr3:5020939..5020952,+!p2@BHLHE40!0.17!3.44!BHLHE40;;chr20:306051..306096,+!p3@SOX12!0.17!2.78!SOX12;;chr12:19671171..19671175,+!p4@AEBP2!0.17!2.29!AEBP2;;chr20:48807091..48807123,+!p7@CEBPB!0.17!2.13!CEBPB;;chr2:145275109..145275128,-!p6@ZEB2!0.17!2.13!ZEB2;;chr6:151712732..151712763,-!p3@ZBTB2!0.17!1.97!ZBTB2;;chr20:31350184..31350200,+!p1@DNMT3B!0.17!1.97!DNMT3B;;chr12:53774035..53774058,+!p4@SP1!0.17!1.80!SP1;;chr11:130184672..130184696,-!p3@ZBTB44!0.17!1.64!ZBTB44;;chr6:28303901..28303944,-!p2@ZNF323!0.17!1.31!ZNF323;;chr16:89940220..89940242,+!p3@TCF25!0.17!1.15!TCF25;;chr10:94449649..94449664,+!p3@HHEX!0.17!1.15!HHEX;;chr8:81398478..81398495,+!p7@ZBTB10!0.17!0.98!ZBTB10;;chr20:44600199..44600219,-!p3@ZNF335!0.17!0.98!ZNF335;;chr20:46130727..46130734,+!p4@NCOA3!0.17!0.98!NCOA3;;chr21:36260773..36260804,-!p7@RUNX1!0.17!0.98!RUNX1;;chr1:42671469..42671496,-!p6@FOXJ3!0.17!0.82!FOXJ3;;chr6:36355513..36355578,-!p2@ETV7!0.17!0.82!ETV7;;chr7:14029312..14029325,-!p4@ETV1!0.17!0.82!ETV1;;chr17:7370612..7370625,-!p9@ZBTB4!0.17!0.82!ZBTB4;;chr18:6414884..6414942,-!p1@L3MBTL4!0.17!0.82!L3MBTL4;;chrX:152599653..152599662,+!p3@ZNF275!0.17!0.82!ZNF275;;chr1:35644482..35644486,-!p11@SFPQ!0.17!0.66!SFPQ;;chr21:30671145..30671156,+!p8@BACH1!0.17!0.66!BACH1;;chr4:106157017..106157029,+!p7@TET2!0.17!0.66!TET2;;chr15:85144307..85144329,+!p2@ZSCAN2!0.17!0.66!ZSCAN2;;chr5:43121586..43121601,+!p10@ZNF131!0.17!0.66!ZNF131;;chr5:134369683..134369708,-!p7@PITX1!0.17!0.49!PITX1;;chr5:134369973..134369984,-!p3@PITX1!0.17!0.49!PITX1;;chr5:134370033..134370042,-!p5@PITX1!0.17!0.49!PITX1;;chr6:126210634..126210644,+!p17@NCOA7!0.17!0.49!NCOA7;;chr6:1610178..1610190,+!p5@FOXC1!0.17!0.49!FOXC1;;chr6:1612200..1612213,+!p9@FOXC1!0.17!0.49!FOXC1;;chr6:1612284..1612295,+!p10@FOXC1!0.17!0.49!FOXC1;;chr6:20402098..20402101,+!p9@E2F3!0.17!0.49!E2F3;;chr6:44232765..44232778,-!p5@NFKBIE!0.17!0.49!NFKBIE;;chr7:101917447..101917479,+!p4@CUX1!0.17!0.49!CUX1;;chr7:104752472..104752486,+!p15@MLL5!0.17!0.49!MLL5;;chr7:106810409..106810420,+!p6@HBP1!0.17!0.49!HBP1;;chr7:137565269..137565282,-!p16@CREB3L2!0.17!0.49!CREB3L2;;chr7:14029004..14029017,-!p8@ETV1!0.17!0.49!ETV1;;chr7:148581442..148581451,-!p3@EZH2!0.17!0.49!EZH2;;chr7:42276771..42276782,-!p4@GLI3!0.17!0.49!GLI3;;chr7:99680193..99680204,-!p2@ZNF3!0.17!0.49!ZNF3;;chr7:99680302..99680329,-!p5@ZNF3!0.17!0.49!ZNF3;;chr8:106330823..106330836,+!p3@ZFPM2!0.17!0.49!ZFPM2;;chr8:106330972..106330979,+!p7@ZFPM2!0.17!0.49!ZFPM2;;chr8:123793708..123793723,+!p6@ZHX2!0.17!0.49!ZHX2;;chr8:128750164..128750173,+!p24@MYC!0.17!0.49!MYC;;chr8:60031934..60031986,-!p6@TOX!0.17!0.49!TOX;;chr19:44100672..44100683,+!p3@ZNF576!0.17!0.49!ZNF576;;chr19:45972330..45972348,+!p21@FOSB!0.17!0.49!FOSB;;chr19:45977993..45978005,+!p6@FOSB!0.17!0.49!FOSB;;chr19:45978377..45978386,+!p18@FOSB!0.17!0.49!FOSB;;chr19:50529307..50529323,+!p3@ZNF473!0.17!0.49!ZNF473;;chr19:50529329..50529340,+!p6@ZNF473!0.17!0.49!ZNF473;;chr19:50832895..50832928,+!p3@NR1H2!0.17!0.49!NR1H2;;chr1:158969727..158969749,+!p11@IFI16!0.17!0.49!IFI16;;chr1:158985457..158985468,+!p12@IFI16!0.17!0.49!IFI16;;chr1:212873162..212873188,-!p3@BATF3!0.17!0.49!BATF3;;chr1:244219392..244219409,+!p5@ZNF238!0.17!0.49!ZNF238;;chr1:3569101..3569115,+!p2@TP73!0.17!0.49!TP73;;chr1:6479968..6479986,-!p1@HES2!0.17!0.49!HES2;;chr1:8935472..8935488,-!p20@ENO1!0.17!0.49!ENO1;;chr20:23342653..23342680,+!p3@GZF1!0.17!0.49!GZF1;;chr21:36259830..36259842,-!p30@RUNX1!0.17!0.49!RUNX1;;chr9:126774018..126774055,+!p1@LHX2!0.17!0.49!LHX2;;chr9:99180739..99180752,-!p4@ZNF367!0.17!0.49!ZNF367;;chr9:3525848..3525863,-!p6@RFX3!0.17!0.49!RFX3;;chr9:14083091..14083096,-!p12@NFIB!0.17!0.49!NFIB;;chr9:14314946..14314983,-!p8@NFIB!0.17!0.49!NFIB;;chr9:14313641..14313652,-!p13@NFIB!0.17!0.49!NFIB;;chr10:28035112..28035130,-!p5@MKX!0.17!0.49!MKX;;chr10:64134045..64134083,+!p3@ZNF365!0.17!0.49!ZNF365;;chr10:8097591..8097627,+!p7@GATA3!0.17!0.49!GATA3;;chr12:10875548..10875563,-!p13@CSDA!0.17!0.49!CSDA;;chr12:52448420..52448460,+!p5@NR4A1!0.17!0.49!NR4A1;;chr12:52450298..52450331,+!p11@NR4A1!0.17!0.49!NR4A1;;chr12:54402790..54402805,+!p2@HOXC8!0.17!0.49!HOXC8;;chr12:54422217..54422239,+!p3@HOXC6!0.17!0.49!HOXC6;;chr12:57911081..57911085,-!p2@DDIT3!0.17!0.49!DDIT3;;chr12:66358080..66358094,+!p15@HMGA2!0.17!0.49!HMGA2;;chr12:80084018..80084035,-!p17@PAWR!0.17!0.49!PAWR;;chr12:80084701..80084710,-!p20@PAWR!0.17!0.49!PAWR;;chr13:37494275..37494304,-!p2@SMAD9!0.17!0.49!SMAD9;;chr13:37494391..37494406,-!p5@SMAD9!0.17!0.49!SMAD9;;chr13:73632897..73632923,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|sample_dev_stage=
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0007123,UBERON:0010316
|sample_tissue=thyroid
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.83000
|rna_od260/280=2.13000
|sample_cell_type=unclassifiable
|sample_cell_line=8505C
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=papillary adenocarcinoma
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Line 67: Line 40:
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|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.10312222284811e-241!GO:0043226;organelle;6.94923261700298e-199!GO:0043229;intracellular organelle;2.5505680738476e-198!GO:0043231;intracellular membrane-bound organelle;5.58730964386658e-196!GO:0043227;membrane-bound organelle;5.58730964386658e-196!GO:0005737;cytoplasm;7.28673767380492e-181!GO:0044422;organelle part;1.02253198927004e-150!GO:0044446;intracellular organelle part;5.11138341407257e-149!GO:0044444;cytoplasmic part;1.83960122626409e-127!GO:0032991;macromolecular complex;6.25508929254965e-108!GO:0005515;protein binding;6.13132087470052e-91!GO:0030529;ribonucleoprotein complex;1.34375312977105e-89!GO:0044238;primary metabolic process;1.29076571195089e-87!GO:0044237;cellular metabolic process;7.0056123528936e-87!GO:0005634;nucleus;1.50601857625373e-84!GO:0043170;macromolecule metabolic process;7.68930336642897e-82!GO:0044428;nuclear part;8.67743942206006e-81!GO:0043233;organelle lumen;4.14100082525798e-77!GO:0031974;membrane-enclosed lumen;4.14100082525798e-77!GO:0003723;RNA binding;4.23551867545646e-72!GO:0005739;mitochondrion;4.52011519269971e-67!GO:0016043;cellular component organization and biogenesis;1.3027875930619e-55!GO:0043234;protein complex;3.25931481373262e-55!GO:0006412;translation;2.47865285749257e-53!GO:0006396;RNA processing;3.32980514328425e-53!GO:0005840;ribosome;9.42414871360878e-53!GO:0019538;protein metabolic process;1.2871923564798e-51!GO:0031090;organelle membrane;1.09158252820555e-47!GO:0031981;nuclear lumen;1.20436810280251e-47!GO:0043283;biopolymer metabolic process;6.6293529294228e-47!GO:0044267;cellular protein metabolic process;1.16967768841881e-46!GO:0044260;cellular macromolecule metabolic process;1.6468854470713e-46!GO:0003735;structural constituent of ribosome;7.72724384712506e-46!GO:0033036;macromolecule localization;2.12103028451424e-44!GO:0044429;mitochondrial part;1.50809220202229e-43!GO:0015031;protein transport;1.51262776742757e-43!GO:0031967;organelle envelope;2.61314573444255e-41!GO:0044249;cellular biosynthetic process;2.85326659151914e-41!GO:0009058;biosynthetic process;3.36011911110157e-41!GO:0031975;envelope;4.45995284155678e-41!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.11115744975e-41!GO:0043228;non-membrane-bound organelle;1.75535217077964e-40!GO:0043232;intracellular non-membrane-bound organelle;1.75535217077964e-40!GO:0045184;establishment of protein localization;1.81138310304819e-40!GO:0010467;gene expression;5.49934147137588e-40!GO:0008104;protein localization;5.71270382646969e-40!GO:0033279;ribosomal subunit;7.83676729455085e-40!GO:0016071;mRNA metabolic process;9.08362245042766e-40!GO:0009059;macromolecule biosynthetic process;9.70153166155957e-40!GO:0008380;RNA splicing;4.59785093719285e-38!GO:0006996;organelle organization and biogenesis;1.32549609789034e-37!GO:0005829;cytosol;1.38890837989345e-37!GO:0046907;intracellular transport;6.03800757386309e-37!GO:0006259;DNA metabolic process;2.82727855481245e-35!GO:0006397;mRNA processing;3.22367370290051e-35!GO:0065003;macromolecular complex assembly;1.98233192794998e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.00578278062086e-33!GO:0022607;cellular component assembly;2.59252714453673e-30!GO:0007049;cell cycle;1.79843580334089e-29!GO:0006886;intracellular protein transport;2.34462944116971e-29!GO:0005654;nucleoplasm;3.99951499826713e-29!GO:0005740;mitochondrial envelope;1.94553654901536e-27!GO:0005681;spliceosome;2.52289605222877e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.78858088596979e-27!GO:0019866;organelle inner membrane;4.56234065157437e-26!GO:0031966;mitochondrial membrane;4.66050810838505e-26!GO:0000166;nucleotide binding;7.91226680386017e-25!GO:0051649;establishment of cellular localization;3.00964233255958e-24!GO:0005743;mitochondrial inner membrane;5.51830847311221e-24!GO:0051641;cellular localization;8.30452628617766e-24!GO:0044451;nucleoplasm part;1.38885160292352e-23!GO:0022402;cell cycle process;1.1469599146493e-22!GO:0044445;cytosolic part;1.50958309055866e-22!GO:0000278;mitotic cell cycle;1.72542146437181e-22!GO:0003676;nucleic acid binding;2.69528776350281e-22!GO:0006119;oxidative phosphorylation;6.91559213697811e-22!GO:0016874;ligase activity;1.19573693562995e-21!GO:0016462;pyrophosphatase activity;1.39626677900184e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.6611826804335e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;2.58000826656501e-21!GO:0017111;nucleoside-triphosphatase activity;4.58238825427715e-21!GO:0015934;large ribosomal subunit;8.65236626274046e-21!GO:0006457;protein folding;1.57551493651177e-20!GO:0012505;endomembrane system;2.36841651824316e-20!GO:0006974;response to DNA damage stimulus;3.90128536427562e-20!GO:0015935;small ribosomal subunit;4.84522075348752e-20!GO:0005730;nucleolus;5.48867399504846e-20!GO:0044455;mitochondrial membrane part;1.13805012932279e-19!GO:0031980;mitochondrial lumen;2.05119268168291e-19!GO:0005759;mitochondrial matrix;2.05119268168291e-19!GO:0022618;protein-RNA complex assembly;4.46215540423407e-18!GO:0005694;chromosome;6.90821675452851e-18!GO:0032553;ribonucleotide binding;9.59375744914663e-18!GO:0032555;purine ribonucleotide binding;9.59375744914663e-18!GO:0000087;M phase of mitotic cell cycle;2.18954642599249e-17!GO:0005783;endoplasmic reticulum;2.19539622189953e-17!GO:0006281;DNA repair;2.19539622189953e-17!GO:0007067;mitosis;3.36987777330112e-17!GO:0017076;purine nucleotide binding;4.08549950858146e-17!GO:0022403;cell cycle phase;4.68129914864452e-17!GO:0008134;transcription factor binding;6.16153752791583e-17!GO:0016070;RNA metabolic process;1.10256422304366e-16!GO:0044427;chromosomal part;1.19673148105096e-16!GO:0006512;ubiquitin cycle;1.19914790441902e-16!GO:0006260;DNA replication;1.54701123470563e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.54701123470563e-16!GO:0042254;ribosome biogenesis and assembly;3.88312095262458e-16!GO:0048770;pigment granule;4.05506537119668e-16!GO:0042470;melanosome;4.05506537119668e-16!GO:0005746;mitochondrial respiratory chain;4.79446662241127e-16!GO:0005761;mitochondrial ribosome;5.01704301868633e-16!GO:0000313;organellar ribosome;5.01704301868633e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;5.92335568140255e-16!GO:0006511;ubiquitin-dependent protein catabolic process;8.84346896224994e-16!GO:0044432;endoplasmic reticulum part;8.85402800778687e-16!GO:0019941;modification-dependent protein catabolic process;9.25357490995618e-16!GO:0043632;modification-dependent macromolecule catabolic process;9.25357490995618e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.37081715557466e-16!GO:0044265;cellular macromolecule catabolic process;1.10217892293159e-15!GO:0043285;biopolymer catabolic process;1.65727015705698e-15!GO:0044257;cellular protein catabolic process;1.82777804345727e-15!GO:0005524;ATP binding;2.70360854317345e-15!GO:0006605;protein targeting;3.5251476763903e-15!GO:0032559;adenyl ribonucleotide binding;5.96976717984733e-15!GO:0012501;programmed cell death;8.1989919827071e-15!GO:0008135;translation factor activity, nucleic acid binding;9.80761127754143e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.07578808121441e-14!GO:0003954;NADH dehydrogenase activity;1.07578808121441e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.07578808121441e-14!GO:0006915;apoptosis;1.31829533219192e-14!GO:0005635;nuclear envelope;1.52490199290055e-14!GO:0051186;cofactor metabolic process;1.71820876326021e-14!GO:0051082;unfolded protein binding;1.9224805387049e-14!GO:0030554;adenyl nucleotide binding;3.37933722051114e-14!GO:0009719;response to endogenous stimulus;3.85703711067204e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.66806419167686e-14!GO:0051276;chromosome organization and biogenesis;6.3535189211622e-14!GO:0000279;M phase;8.77426834012817e-14!GO:0030163;protein catabolic process;1.16228051581809e-13!GO:0051301;cell division;1.19225150915836e-13!GO:0009057;macromolecule catabolic process;1.46952874082337e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.86063715807005e-13!GO:0005794;Golgi apparatus;2.00446419162915e-13!GO:0043412;biopolymer modification;2.36041136705904e-13!GO:0048193;Golgi vesicle transport;2.42211215408066e-13!GO:0031965;nuclear membrane;3.38460115234525e-13!GO:0008219;cell death;3.92266432692658e-13!GO:0016265;death;3.92266432692658e-13!GO:0044453;nuclear membrane part;4.93052189056941e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.77191871925293e-13!GO:0042773;ATP synthesis coupled electron transport;6.77191871925293e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;8.24823736301842e-13!GO:0000375;RNA splicing, via transesterification reactions;8.24823736301842e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.24823736301842e-13!GO:0030964;NADH dehydrogenase complex (quinone);8.67798641451621e-13!GO:0045271;respiratory chain complex I;8.67798641451621e-13!GO:0005747;mitochondrial respiratory chain complex I;8.67798641451621e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.79068777500143e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.28152199576362e-12!GO:0006913;nucleocytoplasmic transport;2.35645524308444e-12!GO:0016192;vesicle-mediated transport;2.36824190655777e-12!GO:0051726;regulation of cell cycle;3.80359373041134e-12!GO:0006399;tRNA metabolic process;4.78300445626199e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.82742318838216e-12!GO:0051169;nuclear transport;4.966266689696e-12!GO:0000074;regulation of progression through cell cycle;6.13782194473817e-12!GO:0006366;transcription from RNA polymerase II promoter;9.35716893143702e-12!GO:0044248;cellular catabolic process;9.81270155784573e-12!GO:0006732;coenzyme metabolic process;1.17622415754672e-11!GO:0006464;protein modification process;1.22467962484584e-11!GO:0016887;ATPase activity;1.26116163638155e-11!GO:0005789;endoplasmic reticulum membrane;1.40696635918652e-11!GO:0006413;translational initiation;1.85881932103321e-11!GO:0006446;regulation of translational initiation;2.03037728808002e-11!GO:0042623;ATPase activity, coupled;4.39900374239637e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.42770924051405e-11!GO:0003743;translation initiation factor activity;4.93717767718206e-11!GO:0005643;nuclear pore;5.31315804349709e-11!GO:0050657;nucleic acid transport;5.90905553419911e-11!GO:0051236;establishment of RNA localization;5.90905553419911e-11!GO:0050658;RNA transport;5.90905553419911e-11!GO:0009259;ribonucleotide metabolic process;6.55248329800607e-11!GO:0006403;RNA localization;6.59363184710397e-11!GO:0008639;small protein conjugating enzyme activity;7.43837574113175e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.04307298821775e-10!GO:0006364;rRNA processing;1.23636747468801e-10!GO:0016604;nuclear body;1.41542230617968e-10!GO:0065002;intracellular protein transport across a membrane;1.4960342168374e-10!GO:0004842;ubiquitin-protein ligase activity;2.12213866985128e-10!GO:0043687;post-translational protein modification;2.16356781610948e-10!GO:0006461;protein complex assembly;2.35994058147021e-10!GO:0016072;rRNA metabolic process;2.39078956624629e-10!GO:0003712;transcription cofactor activity;2.5866701786407e-10!GO:0048523;negative regulation of cellular process;3.37723775104782e-10!GO:0006323;DNA packaging;3.49536554078172e-10!GO:0006163;purine nucleotide metabolic process;4.17355273751062e-10!GO:0019787;small conjugating protein ligase activity;4.17966447219953e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.29645191779095e-10!GO:0009055;electron carrier activity;5.69926469319435e-10!GO:0004386;helicase activity;8.18711666705063e-10!GO:0009260;ribonucleotide biosynthetic process;9.25401029217347e-10!GO:0009150;purine ribonucleotide metabolic process;1.20021477884143e-09!GO:0042981;regulation of apoptosis;1.20021477884143e-09!GO:0065004;protein-DNA complex assembly;1.22918638644453e-09!GO:0043067;regulation of programmed cell death;1.46162777977961e-09!GO:0006164;purine nucleotide biosynthetic process;2.35277149029012e-09!GO:0000785;chromatin;2.89174764986552e-09!GO:0016881;acid-amino acid ligase activity;2.89174764986552e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.68146617833527e-09!GO:0005793;ER-Golgi intermediate compartment;4.63658738556921e-09!GO:0017038;protein import;4.65980089977283e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.74894250095438e-09!GO:0004812;aminoacyl-tRNA ligase activity;4.74894250095438e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.74894250095438e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.9236689870689e-09!GO:0046930;pore complex;4.96545893494368e-09!GO:0050794;regulation of cellular process;5.579346174528e-09!GO:0051028;mRNA transport;6.0684166171494e-09!GO:0009152;purine ribonucleotide biosynthetic process;6.54017000191098e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.03408924162221e-09!GO:0009141;nucleoside triphosphate metabolic process;7.71185488972574e-09!GO:0015630;microtubule cytoskeleton;8.7967662939024e-09!GO:0016607;nuclear speck;9.40582117047927e-09!GO:0043038;amino acid activation;1.04449997326473e-08!GO:0006418;tRNA aminoacylation for protein translation;1.04449997326473e-08!GO:0043039;tRNA aminoacylation;1.04449997326473e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.14892547900997e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.14892547900997e-08!GO:0008565;protein transporter activity;1.18754373962642e-08!GO:0007005;mitochondrion organization and biogenesis;1.21741405314365e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.39005296250917e-08!GO:0048519;negative regulation of biological process;1.39295400688143e-08!GO:0008026;ATP-dependent helicase activity;1.42076050870459e-08!GO:0043566;structure-specific DNA binding;1.64405122239727e-08!GO:0009060;aerobic respiration;1.97286178957564e-08!GO:0006333;chromatin assembly or disassembly;2.39966009343504e-08!GO:0015986;ATP synthesis coupled proton transport;2.39966009343504e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.39966009343504e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.73121031541034e-08!GO:0051246;regulation of protein metabolic process;2.73121031541034e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.95715107291647e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.95715107291647e-08!GO:0045333;cellular respiration;4.15433056987011e-08!GO:0043069;negative regulation of programmed cell death;4.32342207906993e-08!GO:0046034;ATP metabolic process;5.55652128786852e-08!GO:0051188;cofactor biosynthetic process;5.75682226910096e-08!GO:0003697;single-stranded DNA binding;5.76980990328379e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.75399004760995e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.17234241067344e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.17234241067344e-08!GO:0043066;negative regulation of apoptosis;7.17234241067344e-08!GO:0006916;anti-apoptosis;7.35782598333948e-08!GO:0032446;protein modification by small protein conjugation;1.0284151301655e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.09093277481326e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.21558770683519e-07!GO:0016779;nucleotidyltransferase activity;1.57196675337918e-07!GO:0005768;endosome;1.66680262196016e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.69307016472398e-07!GO:0019829;cation-transporting ATPase activity;1.73881567434569e-07!GO:0006261;DNA-dependent DNA replication;1.77710625811047e-07!GO:0016567;protein ubiquitination;1.79673493927229e-07!GO:0005667;transcription factor complex;1.84568708117244e-07!GO:0003924;GTPase activity;2.81146076858738e-07!GO:0006754;ATP biosynthetic process;3.00162308970477e-07!GO:0006753;nucleoside phosphate metabolic process;3.00162308970477e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.60679946617239e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.84806543310454e-07!GO:0043623;cellular protein complex assembly;3.96201078232039e-07!GO:0009056;catabolic process;3.96201078232039e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.78409195418362e-07!GO:0009117;nucleotide metabolic process;6.46990235020013e-07!GO:0030120;vesicle coat;9.27297957127091e-07!GO:0030662;coated vesicle membrane;9.27297957127091e-07!GO:0005819;spindle;9.9427703731789e-07!GO:0031324;negative regulation of cellular metabolic process;1.02555845177556e-06!GO:0009108;coenzyme biosynthetic process;1.05266334430164e-06!GO:0004298;threonine endopeptidase activity;1.07631925393808e-06!GO:0048522;positive regulation of cellular process;1.3929267515414e-06!GO:0006334;nucleosome assembly;1.39929857347684e-06!GO:0006099;tricarboxylic acid cycle;1.47974236812442e-06!GO:0046356;acetyl-CoA catabolic process;1.47974236812442e-06!GO:0016568;chromatin modification;1.57017727780112e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.70360883499992e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.83100724008659e-06!GO:0051329;interphase of mitotic cell cycle;1.87818331521966e-06!GO:0031252;leading edge;1.95206047452777e-06!GO:0051325;interphase;2.19941075018606e-06!GO:0045259;proton-transporting ATP synthase complex;2.2187349660369e-06!GO:0005813;centrosome;2.38536879024756e-06!GO:0006084;acetyl-CoA metabolic process;2.45534287693329e-06!GO:0006793;phosphorus metabolic process;2.73316473768602e-06!GO:0006796;phosphate metabolic process;2.73316473768602e-06!GO:0000245;spliceosome assembly;2.785468751991e-06!GO:0006752;group transfer coenzyme metabolic process;2.91116180585872e-06!GO:0000775;chromosome, pericentric region;2.95925580794447e-06!GO:0005657;replication fork;3.16909860421115e-06!GO:0016787;hydrolase activity;3.31005418314299e-06!GO:0031497;chromatin assembly;3.88173970915133e-06!GO:0005762;mitochondrial large ribosomal subunit;5.01670481668805e-06!GO:0000315;organellar large ribosomal subunit;5.01670481668805e-06!GO:0051168;nuclear export;5.11718239319791e-06!GO:0051170;nuclear import;5.19466976199823e-06!GO:0005815;microtubule organizing center;5.74190983371491e-06!GO:0005788;endoplasmic reticulum lumen;5.84112577250381e-06!GO:0019899;enzyme binding;6.25768932097339e-06!GO:0016563;transcription activator activity;6.3167178643578e-06!GO:0050789;regulation of biological process;6.32393320498225e-06!GO:0048475;coated membrane;6.77561655755086e-06!GO:0030117;membrane coat;6.77561655755086e-06!GO:0016564;transcription repressor activity;7.05890404773719e-06!GO:0007051;spindle organization and biogenesis;8.03674726448798e-06!GO:0006606;protein import into nucleus;8.75795688909847e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.87461618849347e-06!GO:0005773;vacuole;9.08116948233965e-06!GO:0044431;Golgi apparatus part;9.98513517465808e-06!GO:0000075;cell cycle checkpoint;1.09598709433347e-05!GO:0000151;ubiquitin ligase complex;1.12077546315857e-05!GO:0016740;transferase activity;1.27261047687775e-05!GO:0009892;negative regulation of metabolic process;1.37740639436483e-05!GO:0006613;cotranslational protein targeting to membrane;1.52123110333501e-05!GO:0007243;protein kinase cascade;1.52123110333501e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.53593929434237e-05!GO:0009109;coenzyme catabolic process;1.62939726285464e-05!GO:0016853;isomerase activity;1.62980652599976e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.66535355225737e-05!GO:0008654;phospholipid biosynthetic process;1.68146201561617e-05!GO:0003899;DNA-directed RNA polymerase activity;1.72796485865439e-05!GO:0016310;phosphorylation;1.80646663479948e-05!GO:0000314;organellar small ribosomal subunit;2.01325998781105e-05!GO:0005763;mitochondrial small ribosomal subunit;2.01325998781105e-05!GO:0003714;transcription corepressor activity;2.10765186499181e-05!GO:0003713;transcription coactivator activity;2.11323703281232e-05!GO:0007010;cytoskeleton organization and biogenesis;2.20466565989076e-05!GO:0051427;hormone receptor binding;2.94528492866625e-05!GO:0045786;negative regulation of progression through cell cycle;3.9458997652861e-05!GO:0051187;cofactor catabolic process;4.06831625780037e-05!GO:0005525;GTP binding;4.16779174643515e-05!GO:0003724;RNA helicase activity;5.17911218699733e-05!GO:0005770;late endosome;5.50242594337279e-05!GO:0007088;regulation of mitosis;5.7501847722213e-05!GO:0043021;ribonucleoprotein binding;5.83117536159758e-05!GO:0000323;lytic vacuole;5.85767458635374e-05!GO:0005764;lysosome;5.85767458635374e-05!GO:0016363;nuclear matrix;6.25333148674104e-05!GO:0035257;nuclear hormone receptor binding;6.53009760345936e-05!GO:0003690;double-stranded DNA binding;6.76511281332536e-05!GO:0008361;regulation of cell size;6.78168403012792e-05!GO:0006626;protein targeting to mitochondrion;7.15382311033485e-05!GO:0043681;protein import into mitochondrion;8.17117521776088e-05!GO:0030867;rough endoplasmic reticulum membrane;8.43977800098349e-05!GO:0030036;actin cytoskeleton organization and biogenesis;8.46798283308114e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.94323591193741e-05!GO:0008033;tRNA processing;9.00200055577365e-05!GO:0008094;DNA-dependent ATPase activity;9.0854789765454e-05!GO:0031988;membrane-bound vesicle;9.79408989730226e-05!GO:0016049;cell growth;0.000101564011808571!GO:0016859;cis-trans isomerase activity;0.000102402656165461!GO:0003729;mRNA binding;0.000106921435220753!GO:0045454;cell redox homeostasis;0.000110883504736075!GO:0051052;regulation of DNA metabolic process;0.000118636966828754!GO:0016023;cytoplasmic membrane-bound vesicle;0.000122349033692509!GO:0044440;endosomal part;0.000124952570967297!GO:0010008;endosome membrane;0.000124952570967297!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000129313263992926!GO:0001558;regulation of cell growth;0.000133583036657445!GO:0051789;response to protein stimulus;0.000170854326611094!GO:0006986;response to unfolded protein;0.000170854326611094!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00017799758192878!GO:0005798;Golgi-associated vesicle;0.000182701780302678!GO:0006302;double-strand break repair;0.000199514817140097!GO:0006839;mitochondrial transport;0.000199514817140097!GO:0042802;identical protein binding;0.000204994421278728!GO:0016481;negative regulation of transcription;0.000207960004155262!GO:0005769;early endosome;0.000207960004155262!GO:0048518;positive regulation of biological process;0.000209082225971029!GO:0033116;ER-Golgi intermediate compartment membrane;0.000273131892345447!GO:0003682;chromatin binding;0.000286277963009511!GO:0000139;Golgi membrane;0.00029222859080373!GO:0065009;regulation of a molecular function;0.000293023345444723!GO:0005905;coated pit;0.000293023345444723!GO:0032561;guanyl ribonucleotide binding;0.00035194624790522!GO:0019001;guanyl nucleotide binding;0.00035194624790522!GO:0031982;vesicle;0.000369995726619015!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000386560088380462!GO:0001726;ruffle;0.000389044430413704!GO:0003684;damaged DNA binding;0.00041311107751724!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00043266690969045!GO:0051252;regulation of RNA metabolic process;0.000443510161099668!GO:0004576;oligosaccharyl transferase activity;0.000466871555217084!GO:0008250;oligosaccharyl transferase complex;0.000494269650719255!GO:0006612;protein targeting to membrane;0.000498164540330977!GO:0005048;signal sequence binding;0.000536380298426354!GO:0030029;actin filament-based process;0.000538352848610737!GO:0019222;regulation of metabolic process;0.000557323407213058!GO:0015980;energy derivation by oxidation of organic compounds;0.000560713072610637!GO:0009165;nucleotide biosynthetic process;0.000571255736699328!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000574320039910404!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000580899324153069!GO:0006383;transcription from RNA polymerase III promoter;0.000607448545275261!GO:0048471;perinuclear region of cytoplasm;0.000622951715574284!GO:0031410;cytoplasmic vesicle;0.000636417593039043!GO:0044452;nucleolar part;0.000695244501251864!GO:0030880;RNA polymerase complex;0.00071624386435792!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000734545514338512!GO:0006405;RNA export from nucleus;0.000763916017729664!GO:0016044;membrane organization and biogenesis;0.000833278173829628!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000850115140059246!GO:0006352;transcription initiation;0.000858417468304241!GO:0000776;kinetochore;0.000898833999004707!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000900392563710747!GO:0007059;chromosome segregation;0.000900392563710747!GO:0006402;mRNA catabolic process;0.000902543175368734!GO:0006414;translational elongation;0.000914891566580845!GO:0051920;peroxiredoxin activity;0.000935851979676089!GO:0046489;phosphoinositide biosynthetic process;0.000958664485575106!GO:0048468;cell development;0.000960548596309436!GO:0046474;glycerophospholipid biosynthetic process;0.000970971586094612!GO:0031968;organelle outer membrane;0.00102095139961234!GO:0048487;beta-tubulin binding;0.00107795546081067!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0010806945634824!GO:0040008;regulation of growth;0.00110181086179296!GO:0019867;outer membrane;0.00113711781766068!GO:0003746;translation elongation factor activity;0.00117349144308302!GO:0006091;generation of precursor metabolites and energy;0.00121115033315746!GO:0033673;negative regulation of kinase activity;0.00123034731888554!GO:0006469;negative regulation of protein kinase activity;0.00123034731888554!GO:0006310;DNA recombination;0.00125360367786672!GO:0046983;protein dimerization activity;0.00128037477618502!GO:0007006;mitochondrial membrane organization and biogenesis;0.00128738843533185!GO:0008186;RNA-dependent ATPase activity;0.00129429509158188!GO:0005885;Arp2/3 protein complex;0.00134571992463092!GO:0006950;response to stress;0.0013829116823283!GO:0005874;microtubule;0.00138438098484854!GO:0000049;tRNA binding;0.00141301454113291!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00142253028240165!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00142253028240165!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00142253028240165!GO:0045941;positive regulation of transcription;0.00144749875508513!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00149941045909977!GO:0016272;prefoldin complex;0.00155631100790801!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00158529462783936!GO:0000428;DNA-directed RNA polymerase complex;0.00158529462783936!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00158529462783936!GO:0016197;endosome transport;0.00160133598787887!GO:0046467;membrane lipid biosynthetic process;0.00161679800316776!GO:0043596;nuclear replication fork;0.00163314631915481!GO:0019843;rRNA binding;0.00168139077245998!GO:0003711;transcription elongation regulator activity;0.00178355870638387!GO:0032508;DNA duplex unwinding;0.00180401540511376!GO:0032392;DNA geometric change;0.00180401540511376!GO:0009967;positive regulation of signal transduction;0.00184032053662107!GO:0006401;RNA catabolic process;0.00184032053662107!GO:0003678;DNA helicase activity;0.00184032053662107!GO:0045893;positive regulation of transcription, DNA-dependent;0.00193429522580709!GO:0000059;protein import into nucleus, docking;0.00194625702431226!GO:0007093;mitotic cell cycle checkpoint;0.00199059352690488!GO:0004527;exonuclease activity;0.00200458568712517!GO:0051348;negative regulation of transferase activity;0.00208623444860919!GO:0048500;signal recognition particle;0.0021099517773246!GO:0018196;peptidyl-asparagine modification;0.00234044433992921!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00234044433992921!GO:0000082;G1/S transition of mitotic cell cycle;0.00236400612583245!GO:0000786;nucleosome;0.00238493847583865!GO:0005741;mitochondrial outer membrane;0.00243206060436818!GO:0006268;DNA unwinding during replication;0.00243457121878699!GO:0005684;U2-dependent spliceosome;0.00243574110682005!GO:0007052;mitotic spindle organization and biogenesis;0.00261968366779063!GO:0016126;sterol biosynthetic process;0.00265960456289687!GO:0008022;protein C-terminus binding;0.00275034952342515!GO:0006891;intra-Golgi vesicle-mediated transport;0.00280372030504856!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00293178487625556!GO:0015399;primary active transmembrane transporter activity;0.00293178487625556!GO:0008312;7S RNA binding;0.00301702773035052!GO:0008092;cytoskeletal protein binding;0.00316236010626263!GO:0006818;hydrogen transport;0.00322169482421975!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00330315913646886!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00330315913646886!GO:0008243;plasminogen activator activity;0.00336182063943934!GO:0005791;rough endoplasmic reticulum;0.00337272917329252!GO:0004004;ATP-dependent RNA helicase activity;0.00338182834702613!GO:0030027;lamellipodium;0.00348670445626587!GO:0016491;oxidoreductase activity;0.00348670445626587!GO:0030132;clathrin coat of coated pit;0.0035201389883449!GO:0015992;proton transport;0.00353524767004514!GO:0065007;biological regulation;0.00354329169226933!GO:0006520;amino acid metabolic process;0.00355207847660029!GO:0016251;general RNA polymerase II transcription factor activity;0.00365196195930963!GO:0043065;positive regulation of apoptosis;0.0036979570379464!GO:0030521;androgen receptor signaling pathway;0.00371194198235299!GO:0015631;tubulin binding;0.00378544168285119!GO:0006275;regulation of DNA replication;0.00386960821956425!GO:0043488;regulation of mRNA stability;0.00394892929627293!GO:0043487;regulation of RNA stability;0.00394892929627293!GO:0030176;integral to endoplasmic reticulum membrane;0.00398728515510112!GO:0051087;chaperone binding;0.00410001783684636!GO:0009112;nucleobase metabolic process;0.00415074524595514!GO:0008632;apoptotic program;0.00415074524595514!GO:0030663;COPI coated vesicle membrane;0.00415118860549372!GO:0030126;COPI vesicle coat;0.00415118860549372!GO:0031072;heat shock protein binding;0.00431313493400122!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00451011308170803!GO:0005637;nuclear inner membrane;0.00466377932937453!GO:0009116;nucleoside metabolic process;0.00482883350172266!GO:0006611;protein export from nucleus;0.00487849419788988!GO:0006497;protein amino acid lipidation;0.00499249162986271!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00509517902924219!GO:0043068;positive regulation of programmed cell death;0.00512243581726021!GO:0051338;regulation of transferase activity;0.00547033951966357!GO:0006417;regulation of translation;0.00566245156919529!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00595171942434456!GO:0045047;protein targeting to ER;0.00595171942434456!GO:0043284;biopolymer biosynthetic process;0.00602356143258127!GO:0043022;ribosome binding;0.00612429257233922!GO:0035258;steroid hormone receptor binding;0.00637270229943731!GO:0006289;nucleotide-excision repair;0.00643262550972458!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00656684651228254!GO:0008408;3'-5' exonuclease activity;0.00680513722619471!GO:0050790;regulation of catalytic activity;0.00695042073397967!GO:0006984;ER-nuclear signaling pathway;0.00720763214442968!GO:0043549;regulation of kinase activity;0.00720763214442968!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00736444343642838!GO:0008139;nuclear localization sequence binding;0.00744727475278075!GO:0043601;nuclear replisome;0.00752002272723526!GO:0030894;replisome;0.00752002272723526!GO:0051059;NF-kappaB binding;0.00758717901815161!GO:0030658;transport vesicle membrane;0.00761782178958562!GO:0030137;COPI-coated vesicle;0.00775570235393841!GO:0017166;vinculin binding;0.00788647791398537!GO:0006144;purine base metabolic process;0.00799906758138627!GO:0006506;GPI anchor biosynthetic process;0.00814515888377442!GO:0006270;DNA replication initiation;0.00824771984601816!GO:0032200;telomere organization and biogenesis;0.00834268031658058!GO:0000723;telomere maintenance;0.00834268031658058!GO:0006595;polyamine metabolic process;0.00849400306273557!GO:0051540;metal cluster binding;0.00850642920334683!GO:0051536;iron-sulfur cluster binding;0.00850642920334683!GO:0008180;signalosome;0.00864577260452475!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00894278860298938!GO:0007021;tubulin folding;0.00903334613965311!GO:0044262;cellular carbohydrate metabolic process;0.00917252470456092!GO:0016407;acetyltransferase activity;0.00927630247916947!GO:0042770;DNA damage response, signal transduction;0.00930958803002809!GO:0030384;phosphoinositide metabolic process;0.00946876901121918!GO:0009889;regulation of biosynthetic process;0.00954598923773524!GO:0006695;cholesterol biosynthetic process;0.00994162760841793!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0100363792928878!GO:0006509;membrane protein ectodomain proteolysis;0.0100363792928878!GO:0033619;membrane protein proteolysis;0.0100363792928878!GO:0031124;mRNA 3'-end processing;0.0100946362582576!GO:0046483;heterocycle metabolic process;0.0101337114351756!GO:0006354;RNA elongation;0.0102026398237341!GO:0030133;transport vesicle;0.0105036212588264!GO:0006284;base-excision repair;0.0107600194636159!GO:0019752;carboxylic acid metabolic process;0.0109699748772604!GO:0030118;clathrin coat;0.0109699748772604!GO:0007017;microtubule-based process;0.0109985600454856!GO:0006650;glycerophospholipid metabolic process;0.0111186876110686!GO:0006376;mRNA splice site selection;0.0111230697293437!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0111230697293437!GO:0000178;exosome (RNase complex);0.0111678650465877!GO:0008283;cell proliferation;0.0113570260257699!GO:0006505;GPI anchor metabolic process;0.011718354733721!GO:0004674;protein serine/threonine kinase activity;0.0118511116612589!GO:0045045;secretory pathway;0.0119959890044769!GO:0047485;protein N-terminus binding;0.0123604170518414!GO:0005832;chaperonin-containing T-complex;0.0126486195614473!GO:0006082;organic acid metabolic process;0.0127726651224458!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0131717255611247!GO:0050681;androgen receptor binding;0.0134345773128005!GO:0003702;RNA polymerase II transcription factor activity;0.0134438529371206!GO:0046966;thyroid hormone receptor binding;0.0135387641588556!GO:0045859;regulation of protein kinase activity;0.0137028870372164!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0138513846299162!GO:0030660;Golgi-associated vesicle membrane;0.0144960586685815!GO:0008652;amino acid biosynthetic process;0.014706796720126!GO:0019206;nucleoside kinase activity;0.0150038082428522!GO:0009893;positive regulation of metabolic process;0.0150337402569372!GO:0042158;lipoprotein biosynthetic process;0.0151398714873612!GO:0008168;methyltransferase activity;0.0151398714873612!GO:0046982;protein heterodimerization activity;0.0151398714873612!GO:0000209;protein polyubiquitination;0.0151768204400744!GO:0030134;ER to Golgi transport vesicle;0.0152024629799593!GO:0051539;4 iron, 4 sulfur cluster binding;0.0153675172962177!GO:0008637;apoptotic mitochondrial changes;0.0157768669011161!GO:0006338;chromatin remodeling;0.0157954372651454!GO:0050811;GABA receptor binding;0.0158615334087945!GO:0016741;transferase activity, transferring one-carbon groups;0.016075932665095!GO:0000339;RNA cap binding;0.0161259045563239!GO:0031326;regulation of cellular biosynthetic process;0.0162841752218178!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0163142798212465!GO:0004532;exoribonuclease activity;0.0163626380242649!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0163626380242649!GO:0030125;clathrin vesicle coat;0.0169165824551993!GO:0030665;clathrin coated vesicle membrane;0.0169165824551993!GO:0045892;negative regulation of transcription, DNA-dependent;0.0170857914458905!GO:0042393;histone binding;0.0170864980910772!GO:0006672;ceramide metabolic process;0.0171739014936575!GO:0007050;cell cycle arrest;0.0175161937541001!GO:0031529;ruffle organization and biogenesis;0.0178174018187423!GO:0005869;dynactin complex;0.0178888948767923!GO:0000096;sulfur amino acid metabolic process;0.0180408084520252!GO:0005774;vacuolar membrane;0.0180533853732732!GO:0045792;negative regulation of cell size;0.0184950202663509!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0186904986365187!GO:0030031;cell projection biogenesis;0.0188618656444017!GO:0000781;chromosome, telomeric region;0.0189332978293326!GO:0016584;nucleosome positioning;0.0189332978293326!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.019086828090528!GO:0008610;lipid biosynthetic process;0.0192209848757631!GO:0005758;mitochondrial intermembrane space;0.019283685471291!GO:0030433;ER-associated protein catabolic process;0.0199510628097845!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0199510628097845!GO:0005876;spindle microtubule;0.0200242440577366!GO:0008047;enzyme activator activity;0.0206330580814257!GO:0043130;ubiquitin binding;0.0206330580814257!GO:0032182;small conjugating protein binding;0.0206330580814257!GO:0000922;spindle pole;0.0212575369766776!GO:0006406;mRNA export from nucleus;0.0217165702960373!GO:0008538;proteasome activator activity;0.0217522637195149!GO:0007264;small GTPase mediated signal transduction;0.0219256175307989!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0219256175307989!GO:0045039;protein import into mitochondrial inner membrane;0.0219256175307989!GO:0016408;C-acyltransferase activity;0.0225329040216447!GO:0030308;negative regulation of cell growth;0.0226441481039767!GO:0007034;vacuolar transport;0.0227052145869857!GO:0006378;mRNA polyadenylation;0.0232645568876357!GO:0004518;nuclease activity;0.0234638117331222!GO:0043492;ATPase activity, coupled to movement of substances;0.0237688726433647!GO:0043624;cellular protein complex disassembly;0.0239313872061227!GO:0008629;induction of apoptosis by intracellular signals;0.0239415302290538!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0239415302290538!GO:0031323;regulation of cellular metabolic process;0.0240038097187677!GO:0030518;steroid hormone receptor signaling pathway;0.0244535507544261!GO:0031970;organelle envelope lumen;0.0246564263042301!GO:0006220;pyrimidine nucleotide metabolic process;0.0247580956040325!GO:0022415;viral reproductive process;0.0247580956040325!GO:0030127;COPII vesicle coat;0.0248349354438858!GO:0012507;ER to Golgi transport vesicle membrane;0.0248349354438858!GO:0006892;post-Golgi vesicle-mediated transport;0.0249279051736897!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0251797347939569!GO:0015002;heme-copper terminal oxidase activity;0.0251797347939569!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0251797347939569!GO:0004129;cytochrome-c oxidase activity;0.0251797347939569!GO:0043407;negative regulation of MAP kinase activity;0.0251873410708528!GO:0000228;nuclear chromosome;0.0251873410708528!GO:0032984;macromolecular complex disassembly;0.0256338522586991!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0264453928723371!GO:0031123;RNA 3'-end processing;0.0265728284170471!GO:0043189;H4/H2A histone acetyltransferase complex;0.026848468794555!GO:0045926;negative regulation of growth;0.0269849362235056!GO:0022890;inorganic cation transmembrane transporter activity;0.0269849362235056!GO:0005669;transcription factor TFIID complex;0.0270196414731528!GO:0046519;sphingoid metabolic process;0.0270636250942823!GO:0043086;negative regulation of catalytic activity;0.0272463305677623!GO:0008234;cysteine-type peptidase activity;0.0278286027904937!GO:0009303;rRNA transcription;0.0284699633160673!GO:0003923;GPI-anchor transamidase activity;0.0285921564777858!GO:0016255;attachment of GPI anchor to protein;0.0285921564777858!GO:0042765;GPI-anchor transamidase complex;0.0285921564777858!GO:0031625;ubiquitin protein ligase binding;0.0291524394850694!GO:0006360;transcription from RNA polymerase I promoter;0.029260359011282!GO:0007004;telomere maintenance via telomerase;0.029644213930604!GO:0030659;cytoplasmic vesicle membrane;0.029644213930604!GO:0007040;lysosome organization and biogenesis;0.0296550973669741!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0296932278345973!GO:0032906;transforming growth factor-beta2 production;0.0298089703402505!GO:0032909;regulation of transforming growth factor-beta2 production;0.0298089703402505!GO:0006643;membrane lipid metabolic process;0.02997915105574!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0300265470951143!GO:0009451;RNA modification;0.0303241382560685!GO:0007346;regulation of progression through mitotic cell cycle;0.0303997858035077!GO:0009124;nucleoside monophosphate biosynthetic process;0.0313754231916585!GO:0009123;nucleoside monophosphate metabolic process;0.0313754231916585!GO:0031901;early endosome membrane;0.0321351447903187!GO:0006458;'de novo' protein folding;0.0322454892440563!GO:0051084;'de novo' posttranslational protein folding;0.0322454892440563!GO:0005096;GTPase activator activity;0.0323245402538925!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0326124453893497!GO:0007041;lysosomal transport;0.0327253600729187!GO:0048146;positive regulation of fibroblast proliferation;0.0332106281035152!GO:0030119;AP-type membrane coat adaptor complex;0.0333409871512629!GO:0046822;regulation of nucleocytoplasmic transport;0.0333507039502627!GO:0031570;DNA integrity checkpoint;0.0336130771420128!GO:0006740;NADPH regeneration;0.0338525915601286!GO:0006098;pentose-phosphate shunt;0.0338525915601286!GO:0000819;sister chromatid segregation;0.0338525915601286!GO:0001836;release of cytochrome c from mitochondria;0.0342192598344329!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.034404873626008!GO:0004860;protein kinase inhibitor activity;0.0349518556268932!GO:0048144;fibroblast proliferation;0.0350076423087467!GO:0048145;regulation of fibroblast proliferation;0.0350076423087467!GO:0032259;methylation;0.0350279878478359!GO:0031902;late endosome membrane;0.0351080756384621!GO:0006897;endocytosis;0.035337419591441!GO:0010324;membrane invagination;0.035337419591441!GO:0043241;protein complex disassembly;0.0356163670318896!GO:0017134;fibroblast growth factor binding;0.0361803075238514!GO:0000118;histone deacetylase complex;0.0373625192498766!GO:0000070;mitotic sister chromatid segregation;0.0374327680316335!GO:0044437;vacuolar part;0.0380936555429108!GO:0004003;ATP-dependent DNA helicase activity;0.0387891983997673!GO:0044433;cytoplasmic vesicle part;0.0393513811921735!GO:0005784;translocon complex;0.0396076302040437!GO:0006607;NLS-bearing substrate import into nucleus;0.0399326965315319!GO:0006400;tRNA modification;0.0405866605345919!GO:0008320;protein transmembrane transporter activity;0.0410945722972242!GO:0031371;ubiquitin conjugating enzyme complex;0.0411579381141091!GO:0051098;regulation of binding;0.041468530687269!GO:0030041;actin filament polymerization;0.0415368242734951!GO:0000792;heterochromatin;0.0417684320371381!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0419973757859949!GO:0010257;NADH dehydrogenase complex assembly;0.0419973757859949!GO:0033108;mitochondrial respiratory chain complex assembly;0.0419973757859949!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0424961881751073!GO:0035035;histone acetyltransferase binding;0.0426881495425704!GO:0022884;macromolecule transmembrane transporter activity;0.0428891692096706!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0428891692096706!GO:0005092;GDP-dissociation inhibitor activity;0.0430505802340055!GO:0006519;amino acid and derivative metabolic process;0.0430713425170378!GO:0008097;5S rRNA binding;0.0440030346198481!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0445077417764856!GO:0046128;purine ribonucleoside metabolic process;0.0447063856705616!GO:0042278;purine nucleoside metabolic process;0.0447063856705616!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0451493020256801!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0455625568807295!GO:0016311;dephosphorylation;0.0455829211906338!GO:0006807;nitrogen compound metabolic process;0.0456953837732544!GO:0043154;negative regulation of caspase activity;0.0460896363509419!GO:0007030;Golgi organization and biogenesis;0.0462457408084293!GO:0043414;biopolymer methylation;0.0462520131030702!GO:0030833;regulation of actin filament polymerization;0.0470085434090745!GO:0035267;NuA4 histone acetyltransferase complex;0.0480928021422535!GO:0005765;lysosomal membrane;0.0494701414581538!GO:0051128;regulation of cellular component organization and biogenesis;0.0497645446870722
|sample_id=10437
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=thyroid
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10437-106E5;search_select_hide=table117:FF:10437-106E5
}}
}}

Latest revision as of 14:02, 3 June 2020

Name:papillary adenocarcinoma cell line:8505C
Species:Human (Homo sapiens)
Library ID:CNhs11716
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuethyroid
dev stageNA
sexunknown
ageNA
cell typeunclassifiable
cell line8505C
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005103
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11716 CAGE DRX007981 DRR008853
Accession ID Hg19

Library idBAMCTSS
CNhs11716 DRZ000278 DRZ001663
Accession ID Hg38

Library idBAMCTSS
CNhs11716 DRZ011628 DRZ013013
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.105
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.335
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0659
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.471
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.00448
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0856
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.315
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0415
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.174
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.152
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0659
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.297
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0659
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.219
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0659
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0116
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0659
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0659
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.387
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.153
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.00188
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.26
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0124
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.174
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11716

Jaspar motifP-value
MA0002.20.0382
MA0003.10.0794
MA0004.10.357
MA0006.10.994
MA0007.10.216
MA0009.10.827
MA0014.10.786
MA0017.10.0305
MA0018.20.0103
MA0019.10.568
MA0024.12.18956e-4
MA0025.10.0013
MA0027.10.761
MA0028.10.0115
MA0029.10.916
MA0030.10.398
MA0031.10.28
MA0035.20.0517
MA0038.10.0294
MA0039.20.677
MA0040.10.895
MA0041.10.517
MA0042.10.61
MA0043.10.00186
MA0046.10.00375
MA0047.20.632
MA0048.10.406
MA0050.10.243
MA0051.10.014
MA0052.10.0101
MA0055.10.0479
MA0057.10.521
MA0058.10.705
MA0059.10.0651
MA0060.10.233
MA0061.10.0253
MA0062.20.177
MA0065.20.784
MA0066.10.85
MA0067.10.0471
MA0068.10.0424
MA0069.10.984
MA0070.10.487
MA0071.10.258
MA0072.10.464
MA0073.10.909
MA0074.10.956
MA0076.10.0943
MA0077.10.543
MA0078.10.367
MA0079.27.79814e-5
MA0080.21.27889e-5
MA0081.10.166
MA0083.10.428
MA0084.10.156
MA0087.10.261
MA0088.10.266
MA0090.10.00357
MA0091.10.0898
MA0092.10.645
MA0093.10.402
MA0099.20.456
MA0100.10.605
MA0101.10.139
MA0102.20.05
MA0103.10.106
MA0104.20.0535
MA0105.10.358
MA0106.10.462
MA0107.10.051
MA0108.20.0556
MA0111.10.467
MA0112.20.452
MA0113.10.0503
MA0114.10.289
MA0115.10.515
MA0116.10.257
MA0117.10.0577
MA0119.10.0594
MA0122.10.827
MA0124.10.0244
MA0125.10.45
MA0131.10.389
MA0135.10.0199
MA0136.10.00788
MA0137.20.119
MA0138.20.217
MA0139.10.825
MA0140.10.297
MA0141.10.515
MA0142.10.192
MA0143.10.127
MA0144.10.346
MA0145.10.0478
MA0146.10.0546
MA0147.10.00714
MA0148.10.446
MA0149.10.044
MA0150.10.0758
MA0152.10.783
MA0153.10.11
MA0154.10.366
MA0155.10.167
MA0156.10.627
MA0157.10.481
MA0159.10.0179
MA0160.10.0323
MA0162.10.0242
MA0163.10.357
MA0164.10.442
MA0258.10.131
MA0259.10.0359



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11716

Novel motifP-value
10.701
100.184
1000.0488
1010.753
1020.927
1030.293
1040.734
1050.0154
1060.507
1070.923
1080.676
1090.259
110.714
1100.706
1110.525
1120.794
1130.0423
1140.547
1150.641
1160.95
1170.566
1180.0326
1190.852
120.0793
1200.0829
1210.861
1220.55
1230.886
1240.0865
1250.388
1260.989
1270.599
1280.00731
1290.805
130.0568
1300.256
1310.731
1320.593
1330.191
1340.0122
1350.856
1360.0913
1370.102
1380.688
1390.0291
140.248
1400.787
1410.983
1420.955
1430.0504
1440.788
1450.833
1460.46
1470.11
1480.573
1490.795
150.921
1500.311
1510.45
1520.0329
1530.302
1540.773
1550.355
1560.448
1570.525
1580.0246
1590.645
160.663
1600.196
1610.33
1620.868
1630.663
1640.0387
1650.329
1660.866
1670.0662
1680.6
1690.856
170.825
180.193
190.58
20.175
200.0388
210.00255
220.085
230.531
240.649
250.232
260.348
270.793
280.554
290.115
30.846
300.294
310.555
320.912
330.0425
340.0569
350.895
360.541
370.902
380.872
390.677
40.158
400.504
410.647
420.84
430.316
440.0536
450.229
460.749
470.987
480.913
490.0739
50.421
500.906
510.618
520.0795
530.142
540.746
550.995
560.665
570.176
580.605
590.557
60.784
600.175
610.773
620.661
630.506
640.572
650.464
660.94
670.554
680.926
690.335
70.62
700.0681
710.347
720.331
730.515
740.531
750.761
760.132
770.809
780.844
790.15
80.144
800.00308
810.948
820.1
830.967
840.182
850.3
860.236
870.159
880.867
890.909
90.176
900.595
910.798
920.992
930.109
940.509
950.466
960.118
970.715
980.963
990.0742



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11716


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
299 (adenocarcinoma)
3112 (papillary adenocarcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002046 (thyroid gland)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0103209 (anaplastic thyroid cancer cell line sample)
0101610 (thyroid cancer cell line sample)
0104965 (8505C cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0007123 (pharyngeal pouch 2)
UBERON:0010316 (germ layer / neural crest)

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