FF:10439-106E7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005252 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007988;DRR008860;DRZ000285;DRZ001670;DRZ011635;DRZ013020 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0101019,FF:0101033,FF:0101061 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:12330560..12330579,+!p1@PPARG!2.36!258.61!PPARG;;chr14:38064429..38064486,-!p1@FOXA1!1.75!54.61!FOXA1;;chr6:34524093..34524135,-!p1@SPDEF!1.65!44.16!SPDEF;;chr17:46806016..46806029,-!p5@HOXB13!1.60!38.93!HOXB13;;chr12:66218255..66218304,+!p3@HMGA2!1.58!96.77!HMGA2;;chr10:38146482..38146507,-!p4@ZNF248!1.58!40.93!ZNF248;;chr17:46806035..46806059,-!p2@HOXB13!1.57!36.37!HOXB13;;chr17:46806067..46806097,-!p1@HOXB13!1.52!31.81!HOXB13;;chr21:38071430..38071456,+!p1@SIM2!1.48!29.03!SIM2;;chr11:65686802..65686818,+!p6@DRAP1!1.43!43.94!DRAP1;;chr17:46806419..46806438,-!p4@HOXB13!1.42!25.58!HOXB13;;chr6:34524049..34524089,-!p2@SPDEF!1.39!23.69!SPDEF;;chr1:201979703..201979721,+!p2@ELF3!1.39!23.58!ELF3;;chr20:55204351..55204377,+!p1@TFAP2C!1.37!28.59!TFAP2C;;chr1:201979743..201979762,+!p1@ELF3!1.36!22.14!ELF3;;chr2:166326200..166326216,+!p1@CSRNP3!1.33!29.48!CSRNP3;;chr12:26277817..26277863,-!p2@BHLHE41!1.33!27.47!BHLHE41;;chr11:34642612..34642646,+!p1@EHF!1.33!20.36!EHF;;chr17:46806373..46806386,-!p6@HOXB13!1.29!18.69!HOXB13;;chr7:27205136..27205164,-!p1@HOXA9!1.28!17.91!HOXA9;;chr11:65667846..65667868,-!p1@FOSL1!1.27!449.93!FOSL1;;chr8:102504651..102504683,+!p1@GRHL2!1.26!17.35!GRHL2;;chr11:65686732..65686756,+!p2@DRAP1!1.25!70.08!DRAP1;;chr6:34204921..34204939,+!p3@HMGA1!1.23!464.95!HMGA1;;chr17:41623692..41623715,-!p1@ETV4!1.23!67.18!ETV4;;chr6:34524025..34524045,-!p3@SPDEF!1.22!15.46!SPDEF;;chr12:66218212..66218244,+!p5@HMGA2!1.21!22.25!HMGA2;;chr20:50179368..50179392,-!p2@NFATC2!1.18!18.46!NFATC2;;chr14:37131058..37131139,+!p1@PAX9!1.18!14.13!PAX9;;chr2:237076992..237077008,-!p2@GBX2!1.18!14.02!GBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.17!61.07!NR2F1;;chr7:27205106..27205134,-!p2@HOXA9!1.17!13.90!HOXA9;;chr12:26277956..26277980,-!p1@BHLHE41!1.16!47.94!BHLHE41;;chr11:65667884..65667895,-!p2@FOSL1!1.15!51.17!FOSL1;;chr10:38146510..38146576,-!p1@ZNF248!1.14!36.82!ZNF248;;chr12:27485762..27485776,+!p3@ARNTL2!1.14!34.70!ARNTL2;;chr17:41622765..41622821,-!p2@ETV4!1.13!18.91!ETV4;;chr4:81118647..81118666,+!p1@PRDM8!1.13!16.68!PRDM8;;chr6:10412600..10412637,-!p1@TFAP2A!1.12!20.24!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!1.11!55.17!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.11!22.80!HMGA2;;chr1:6479968..6479986,-!p1@HES2!1.10!11.68!HES2;;chr15:67418047..67418093,+!p4@SMAD3!1.09!14.24!SMAD3;;chr17:70117153..70117174,+!p1@SOX9!1.08!114.35!SOX9;;chr3:12329358..12329393,+!p3@PPARG!1.08!27.70!PPARG;;chr3:32023232..32023273,+!p1@ZNF860!1.07!15.46!ZNF860;;chr17:46806404..46806415,-!p7@HOXB13!1.07!10.79!HOXB13;;chr19:13134772..13134822,+!p2@NFIX!1.06!15.46!NFIX;;chr7:27224842..27224872,-!p1@HOXA11!1.06!10.46!HOXA11;;chr2:237077022..237077038,-!p1@GBX2!1.06!10.46!GBX2;;chr17:41622925..41622976,-!p3@ETV4!1.05!15.24!ETV4;;chr3:169381420..169381535,-!p1@MECOM!1.05!12.12!MECOM;;chr15:67418119..67418162,+!p5@SMAD3!1.04!11.01!SMAD3;;chr2:19558373..19558392,-!p1@OSR1!1.03!26.70!OSR1;;chr12:26277929..26277955,-!p3@BHLHE41!1.01!13.35!BHLHE41;;chr7:27239703..27239715,-!p1@HOXA13!1.01!9.23!HOXA13;;chr8:77593474..77593612,+!p1@ZFHX4!0.98!36.82!ZFHX4;;chr20:55205825..55205847,+!p2@TFAP2C!0.98!8.56!TFAP2C;;chr13:73633131..73633149,+!p1@KLF5!0.97!92.43!KLF5;;chr8:80679993..80680011,-!p1@HEY1!0.97!12.24!HEY1;;chr7:27224795..27224840,-!p2@HOXA11!0.97!8.34!HOXA11;;chr20:22564895..22564910,-!p1@FOXA2!0.97!8.34!FOXA2;;chr1:42384532..42384603,-!p2@HIVEP3!0.97!8.23!HIVEP3;;chr12:27485785..27485816,+!p1@ARNTL2!0.96!57.73!ARNTL2;;chr1:209979467..209979494,-!p1@IRF6!0.96!9.12!IRF6;;chr22:19748231..19748317,+!p1@TBX1!0.96!8.12!TBX1;;chr5:92918860..92918871,+!p10@NR2F1!0.95!8.90!NR2F1;;chr10:135122868..135122893,+!p3@ZNF511!0.94!7.79!ZNF511;;chr3:12329397..12329433,+!p2@PPARG!0.92!17.35!PPARG;;chr8:10588010..10588030,-!p1@SOX7!0.92!7.23!SOX7;;chr17:46682321..46682362,-!p1@HOXB6!0.92!7.23!HOXB6;;chr10:64134120..64134183,+!p1@ZNF365!0.91!8.79!ZNF365;;chr3:128212033..128212051,-!p1@GATA2!0.91!7.12!GATA2;;chr2:101436564..101436647,+!p1@NPAS2!0.90!146.71!NPAS2;;chr12:66218836..66218888,+!p1@HMGA2!0.90!68.30!HMGA2;;chr10:114710098..114710130,+!p2@TCF7L2!0.90!54.95!TCF7L2;;chr7:26191809..26191890,+!p1@NFE2L3!0.90!35.71!NFE2L3;;chr14:61116183..61116208,-!p1@SIX1!0.90!27.47!SIX1;;chr3:21792585..21792625,-!p2@ZNF385D!0.89!7.56!ZNF385D;;chr10:64134045..64134083,+!p3@ZNF365!0.89!6.67!ZNF365;;chr1:247171316..247171336,-!p3@ZNF695!0.88!10.01!ZNF695;;chr12:27485823..27485868,+!p2@ARNTL2!0.87!27.59!ARNTL2;;chr7:42276787..42276815,-!p1@GLI3!0.87!18.13!GLI3;;chr15:96869511..96869525,+!p16@NR2F2!0.87!7.23!NR2F2;;chr10:77161504..77161530,-!p1@ZNF503!0.86!88.43!ZNF503;;chr21:27107465..27107557,+!p3@GABPA!0.86!23.91!GABPA;;chr5:92918894..92918912,+!p2@NR2F1!0.86!21.69!NR2F1;;chr12:66218378..66218401,+!p6@HMGA2!0.86!9.90!HMGA2;;chr11:31832658..31832681,-!p1@PAX6!0.85!6.01!PAX6;;chr5:2751762..2751784,-!p1@IRX2!0.85!6.01!IRX2;;chr5:92918768..92918783,+!p8@NR2F1!0.84!5.90!NR2F1;;chr10:135122906..135122921,+!p4@ZNF511!0.84!5.90!ZNF511;;chr8:145669791..145669834,-!p1@TONSL!0.83!17.35!TONSL;;chr17:41623009..41623053,-!p4@ETV4!0.82!9.45!ETV4;;chr17:46806098..46806118,-!p3@HOXB13!0.82!5.67!HOXB13;;chr11:65668011..65668020,-!p3@FOSL1!0.82!5.67!FOSL1;;chr21:38071403..38071428,+!p2@SIM2!0.82!5.67!SIM2;;chr21:38071462..38071474,+!p3@SIM2!0.82!5.67!SIM2;;chr10:77161533..77161546,-!p2@ZNF503!0.81!23.02!ZNF503;;chr10:76585303..76585354,+!p4@KAT6B!0.81!8.12!KAT6B;;chr14:38064590..38064606,-!p2@FOXA1!0.81!5.45!FOXA1;;chr11:120107344..120107351,+!p1@POU2F3!0.80!6.56!POU2F3;;chr8:116681409..116681431,-!p2@TRPS1!0.79!15.13!TRPS1;;chr6:1312325..1312340,+!p1@FOXQ1!0.79!8.68!FOXQ1;;chr17:41622834..41622883,-!p6@ETV4!0.79!6.45!ETV4;;chr17:41622731..41622764,-!p5@ETV4!0.79!5.12!ETV4;;chr12:115121962..115121987,-!p1@TBX3!0.78!46.61!TBX3;;chr6:10415276..10415341,-!p2@TFAP2A!0.78!6.23!TFAP2A;;chr17:46806554..46806558,-!p9@HOXB13!0.78!5.01!HOXB13;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.89!HOXC5;;chr12:66218904..66218913,+!p11@HMGA2!0.77!4.89!HMGA2;;chr14:55493763..55493824,-!p1@WDHD1!0.76!39.82!WDHD1;;chr5:134369905..134369972,-!p1@PITX1!0.76!7.67!PITX1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.76!6.12!L3MBTL4;;chr5:92918956..92918969,+!p4@NR2F1!0.76!5.34!NR2F1;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.56!SIX2;;chr11:65554528..65554546,+!p1@OVOL1!0.75!4.56!OVOL1;;chr10:38146468..38146475,-!p12@ZNF248!0.74!4.45!ZNF248;;chr7:14029283..14029311,-!p1@ETV1!0.73!25.69!ETV1;;chr20:50159198..50159299,-!p1@NFATC2!0.73!6.67!NFATC2;;chr10:76585205..76585251,+!p3@KAT6B!0.72!10.01!KAT6B;;chr4:81104985..81105005,+!p4@PRDM8!0.72!5.34!PRDM8;;chr17:41623667..41623682,-!p8@ETV4!0.72!4.56!ETV4;;chr20:22565185..22565223,-!p3@FOXA2!0.72!4.23!FOXA2;;chr6:10415484..10415508,-!p3@TFAP2A!0.72!4.23!TFAP2A;;chr8:102504979..102505010,+!p2@GRHL2!0.72!4.23!GRHL2;;chr8:76319876..76319926,+!p1@HNF4G!0.72!4.23!HNF4G;;chr6:34204672..34204692,+!p1@HMGA1!0.71!527.35!HMGA1;;chr7:19157248..19157268,-!p1@TWIST1!0.71!12.57!TWIST1;;chr19:12163769..12163798,-!p1@ZNF878!0.71!5.56!ZNF878;;chr5:92919452..92919496,+!p11@NR2F1!0.71!4.12!NR2F1;;chr7:27239740..27239759,-!p2@HOXA13!0.71!4.12!HOXA13;;chr6:21597600..21597664,+!p3@SOX4!0.70!7.12!SOX4;;chr2:172949484..172949522,+!p1@DLX1!0.70!4.00!DLX1;;chr20:42295745..42295765,+!p1@MYBL2!0.69!72.52!MYBL2;;chr20:42295713..42295738,+!p2@MYBL2!0.69!25.92!MYBL2;;chr6:10412392..10412409,-!p4@TFAP2A!0.69!4.56!TFAP2A;;chr12:124873852..124873881,-!p3@NCOR2!0.68!25.81!NCOR2;;chr11:65686776..65686787,+!p9@DRAP1!0.68!4.67!DRAP1;;chr10:8095593..8095625,+!p3@GATA3!0.68!4.56!GATA3;;chr7:27192185..27192209,-!p1@HOXA3!0.68!3.78!HOXA3;;chr15:96874012..96874042,+!p2@NR2F2!0.67!38.15!NR2F2;;chr20:32274179..32274213,-!p1@E2F1!0.67!28.03!E2F1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.67!18.91!TAL1;;chr10:35415882..35415941,+!p4@CREM!0.67!18.69!CREM;;chr7:138666053..138666146,-!p1@KIAA1549!0.67!17.24!KIAA1549;;chr1:247171347..247171366,-!p2@ZNF695!0.67!7.23!ZNF695;;chr5:92919100..92919135,+!p3@NR2F1!0.67!4.56!NR2F1;;chrX:128657413..128657456,-!p2@SMARCA1!0.66!36.04!SMARCA1;;chr1:935398..935465,-!p2@HES4!0.66!8.12!HES4;;chr12:26278008..26278024,-!p4@BHLHE41!0.66!4.45!BHLHE41;;chr3:193853927..193853944,+!p1@HES1!0.65!132.59!HES1;;chr12:2986206..2986258,-!p2@FOXM1!0.65!24.36!FOXM1;;chr7:42276822..42276895,-!p2@GLI3!0.65!11.68!GLI3;;chr19:22817119..22817145,+!p1@ZNF492!0.65!6.23!ZNF492;;chr19:17356189..17356221,-!p2@NR2F6!0.65!6.12!NR2F6;;chr11:65687243..65687276,+!p8@DRAP1!0.65!4.89!DRAP1;;chr15:67418099..67418118,+!p16@SMAD3!0.65!3.45!SMAD3;;chr19:3574330..3574393,+!p2@HMG20B!0.64!3.34!HMG20B;;chr10:76586348..76586366,+!p1@KAT6B!0.63!29.14!KAT6B;;chr11:65554563..65554576,+!p2@OVOL1!0.63!3.23!OVOL1;;chr19:23433144..23433204,-!p1@ZNF724P!0.62!16.68!ZNF724P;;chr12:66218152..66218174,+!p10@HMGA2!0.62!3.45!HMGA2;;chr5:88178983..88179012,-!p1@MEF2C!0.61!28.36!MEF2C;;chr8:146228270..146228295,-!p1@ZNF252!0.61!20.36!ZNF252P;;chr9:124976185..124976212,-!p4@LHX6!0.61!3.11!LHX6;;chr7:64838786..64838809,+!p2@ZNF92!0.60!20.02!ZNF92;;chr17:56065729..56065781,-!p2@VEZF1!0.60!15.13!VEZF1;;chr3:24536253..24536328,-!p1@THRB!0.60!6.23!THRB;;chr19:13134457..13134462,+!p5@NFIX!0.60!5.90!NFIX;;chr12:66218443..66218461,+!p8@HMGA2!0.60!4.00!HMGA2;;chr17:41623259..41623278,-!p7@ETV4!0.60!3.56!ETV4;;chr12:66357214..66357233,+!p13@HMGA2!0.60!3.00!HMGA2;;chr6:10413188..10413249,-!p7@TFAP2A!0.60!3.00!TFAP2A;;chr19:53193731..53193767,-!p1@ZNF83!0.59!31.70!ZNF83;;chr19:53496768..53496799,-!p1@ZNF702P!0.59!4.89!ZNF702P;;chr18:56531584..56531646,+!p4@ZNF532!0.59!4.12!ZNF532;;chr5:92919375..92919438,+!p6@NR2F1!0.59!3.23!NR2F1;;chr5:134369879..134369898,-!p2@PITX1!0.59!2.89!PITX1;;chr6:10412576..10412599,-!p5@TFAP2A!0.59!2.89!TFAP2A;;chr17:45928443..45928473,-!p2@SP6!0.59!2.89!SP6;;chr2:63277948..63277974,+!p1@OTX1!0.59!2.89!OTX1;;chr10:114709999..114710031,+!p1@TCF7L2!0.58!81.20!TCF7L2;;chr18:19749541..19749557,+!p1@GATA6!0.58!10.46!GATA6;;chr17:41623716..41623727,-!p12@ETV4!0.58!2.78!ETV4;;chr14:38064495..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| |expression_enrichment_score=chr3:12330560..12330579,+!p1@PPARG!2.36!258.61!PPARG;;chr14:38064429..38064486,-!p1@FOXA1!1.75!54.61!FOXA1;;chr6:34524093..34524135,-!p1@SPDEF!1.65!44.16!SPDEF;;chr17:46806016..46806029,-!p5@HOXB13!1.60!38.93!HOXB13;;chr12:66218255..66218304,+!p3@HMGA2!1.58!96.77!HMGA2;;chr10:38146482..38146507,-!p4@ZNF248!1.58!40.93!ZNF248;;chr17:46806035..46806059,-!p2@HOXB13!1.57!36.37!HOXB13;;chr17:46806067..46806097,-!p1@HOXB13!1.52!31.81!HOXB13;;chr21:38071430..38071456,+!p1@SIM2!1.48!29.03!SIM2;;chr11:65686802..65686818,+!p6@DRAP1!1.43!43.94!DRAP1;;chr17:46806419..46806438,-!p4@HOXB13!1.42!25.58!HOXB13;;chr6:34524049..34524089,-!p2@SPDEF!1.39!23.69!SPDEF;;chr1:201979703..201979721,+!p2@ELF3!1.39!23.58!ELF3;;chr20:55204351..55204377,+!p1@TFAP2C!1.37!28.59!TFAP2C;;chr1:201979743..201979762,+!p1@ELF3!1.36!22.14!ELF3;;chr2:166326200..166326216,+!p1@CSRNP3!1.33!29.48!CSRNP3;;chr12:26277817..26277863,-!p2@BHLHE41!1.33!27.47!BHLHE41;;chr11:34642612..34642646,+!p1@EHF!1.33!20.36!EHF;;chr17:46806373..46806386,-!p6@HOXB13!1.29!18.69!HOXB13;;chr7:27205136..27205164,-!p1@HOXA9!1.28!17.91!HOXA9;;chr11:65667846..65667868,-!p1@FOSL1!1.27!449.93!FOSL1;;chr8:102504651..102504683,+!p1@GRHL2!1.26!17.35!GRHL2;;chr11:65686732..65686756,+!p2@DRAP1!1.25!70.08!DRAP1;;chr6:34204921..34204939,+!p3@HMGA1!1.23!464.95!HMGA1;;chr17:41623692..41623715,-!p1@ETV4!1.23!67.18!ETV4;;chr6:34524025..34524045,-!p3@SPDEF!1.22!15.46!SPDEF;;chr12:66218212..66218244,+!p5@HMGA2!1.21!22.25!HMGA2;;chr20:50179368..50179392,-!p2@NFATC2!1.18!18.46!NFATC2;;chr14:37131058..37131139,+!p1@PAX9!1.18!14.13!PAX9;;chr2:237076992..237077008,-!p2@GBX2!1.18!14.02!GBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.17!61.07!NR2F1;;chr7:27205106..27205134,-!p2@HOXA9!1.17!13.90!HOXA9;;chr12:26277956..26277980,-!p1@BHLHE41!1.16!47.94!BHLHE41;;chr11:65667884..65667895,-!p2@FOSL1!1.15!51.17!FOSL1;;chr10:38146510..38146576,-!p1@ZNF248!1.14!36.82!ZNF248;;chr12:27485762..27485776,+!p3@ARNTL2!1.14!34.70!ARNTL2;;chr17:41622765..41622821,-!p2@ETV4!1.13!18.91!ETV4;;chr4:81118647..81118666,+!p1@PRDM8!1.13!16.68!PRDM8;;chr6:10412600..10412637,-!p1@TFAP2A!1.12!20.24!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!1.11!55.17!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.11!22.80!HMGA2;;chr1:6479968..6479986,-!p1@HES2!1.10!11.68!HES2;;chr15:67418047..67418093,+!p4@SMAD3!1.09!14.24!SMAD3;;chr17:70117153..70117174,+!p1@SOX9!1.08!114.35!SOX9;;chr3:12329358..12329393,+!p3@PPARG!1.08!27.70!PPARG;;chr3:32023232..32023273,+!p1@ZNF860!1.07!15.46!ZNF860;;chr17:46806404..46806415,-!p7@HOXB13!1.07!10.79!HOXB13;;chr19:13134772..13134822,+!p2@NFIX!1.06!15.46!NFIX;;chr7:27224842..27224872,-!p1@HOXA11!1.06!10.46!HOXA11;;chr2:237077022..237077038,-!p1@GBX2!1.06!10.46!GBX2;;chr17:41622925..41622976,-!p3@ETV4!1.05!15.24!ETV4;;chr3:169381420..169381535,-!p1@MECOM!1.05!12.12!MECOM;;chr15:67418119..67418162,+!p5@SMAD3!1.04!11.01!SMAD3;;chr2:19558373..19558392,-!p1@OSR1!1.03!26.70!OSR1;;chr12:26277929..26277955,-!p3@BHLHE41!1.01!13.35!BHLHE41;;chr7:27239703..27239715,-!p1@HOXA13!1.01!9.23!HOXA13;;chr8:77593474..77593612,+!p1@ZFHX4!0.98!36.82!ZFHX4;;chr20:55205825..55205847,+!p2@TFAP2C!0.98!8.56!TFAP2C;;chr13:73633131..73633149,+!p1@KLF5!0.97!92.43!KLF5;;chr8:80679993..80680011,-!p1@HEY1!0.97!12.24!HEY1;;chr7:27224795..27224840,-!p2@HOXA11!0.97!8.34!HOXA11;;chr20:22564895..22564910,-!p1@FOXA2!0.97!8.34!FOXA2;;chr1:42384532..42384603,-!p2@HIVEP3!0.97!8.23!HIVEP3;;chr12:27485785..27485816,+!p1@ARNTL2!0.96!57.73!ARNTL2;;chr1:209979467..209979494,-!p1@IRF6!0.96!9.12!IRF6;;chr22:19748231..19748317,+!p1@TBX1!0.96!8.12!TBX1;;chr5:92918860..92918871,+!p10@NR2F1!0.95!8.90!NR2F1;;chr10:135122868..135122893,+!p3@ZNF511!0.94!7.79!ZNF511;;chr3:12329397..12329433,+!p2@PPARG!0.92!17.35!PPARG;;chr8:10588010..10588030,-!p1@SOX7!0.92!7.23!SOX7;;chr17:46682321..46682362,-!p1@HOXB6!0.92!7.23!HOXB6;;chr10:64134120..64134183,+!p1@ZNF365!0.91!8.79!ZNF365;;chr3:128212033..128212051,-!p1@GATA2!0.91!7.12!GATA2;;chr2:101436564..101436647,+!p1@NPAS2!0.90!146.71!NPAS2;;chr12:66218836..66218888,+!p1@HMGA2!0.90!68.30!HMGA2;;chr10:114710098..114710130,+!p2@TCF7L2!0.90!54.95!TCF7L2;;chr7:26191809..26191890,+!p1@NFE2L3!0.90!35.71!NFE2L3;;chr14:61116183..61116208,-!p1@SIX1!0.90!27.47!SIX1;;chr3:21792585..21792625,-!p2@ZNF385D!0.89!7.56!ZNF385D;;chr10:64134045..64134083,+!p3@ZNF365!0.89!6.67!ZNF365;;chr1:247171316..247171336,-!p3@ZNF695!0.88!10.01!ZNF695;;chr12:27485823..27485868,+!p2@ARNTL2!0.87!27.59!ARNTL2;;chr7:42276787..42276815,-!p1@GLI3!0.87!18.13!GLI3;;chr15:96869511..96869525,+!p16@NR2F2!0.87!7.23!NR2F2;;chr10:77161504..77161530,-!p1@ZNF503!0.86!88.43!ZNF503;;chr21:27107465..27107557,+!p3@GABPA!0.86!23.91!GABPA;;chr5:92918894..92918912,+!p2@NR2F1!0.86!21.69!NR2F1;;chr12:66218378..66218401,+!p6@HMGA2!0.86!9.90!HMGA2;;chr11:31832658..31832681,-!p1@PAX6!0.85!6.01!PAX6;;chr5:2751762..2751784,-!p1@IRX2!0.85!6.01!IRX2;;chr5:92918768..92918783,+!p8@NR2F1!0.84!5.90!NR2F1;;chr10:135122906..135122921,+!p4@ZNF511!0.84!5.90!ZNF511;;chr8:145669791..145669834,-!p1@TONSL!0.83!17.35!TONSL;;chr17:41623009..41623053,-!p4@ETV4!0.82!9.45!ETV4;;chr17:46806098..46806118,-!p3@HOXB13!0.82!5.67!HOXB13;;chr11:65668011..65668020,-!p3@FOSL1!0.82!5.67!FOSL1;;chr21:38071403..38071428,+!p2@SIM2!0.82!5.67!SIM2;;chr21:38071462..38071474,+!p3@SIM2!0.82!5.67!SIM2;;chr10:77161533..77161546,-!p2@ZNF503!0.81!23.02!ZNF503;;chr10:76585303..76585354,+!p4@KAT6B!0.81!8.12!KAT6B;;chr14:38064590..38064606,-!p2@FOXA1!0.81!5.45!FOXA1;;chr11:120107344..120107351,+!p1@POU2F3!0.80!6.56!POU2F3;;chr8:116681409..116681431,-!p2@TRPS1!0.79!15.13!TRPS1;;chr6:1312325..1312340,+!p1@FOXQ1!0.79!8.68!FOXQ1;;chr17:41622834..41622883,-!p6@ETV4!0.79!6.45!ETV4;;chr17:41622731..41622764,-!p5@ETV4!0.79!5.12!ETV4;;chr12:115121962..115121987,-!p1@TBX3!0.78!46.61!TBX3;;chr6:10415276..10415341,-!p2@TFAP2A!0.78!6.23!TFAP2A;;chr17:46806554..46806558,-!p9@HOXB13!0.78!5.01!HOXB13;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.89!HOXC5;;chr12:66218904..66218913,+!p11@HMGA2!0.77!4.89!HMGA2;;chr14:55493763..55493824,-!p1@WDHD1!0.76!39.82!WDHD1;;chr5:134369905..134369972,-!p1@PITX1!0.76!7.67!PITX1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.76!6.12!L3MBTL4;;chr5:92918956..92918969,+!p4@NR2F1!0.76!5.34!NR2F1;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.56!SIX2;;chr11:65554528..65554546,+!p1@OVOL1!0.75!4.56!OVOL1;;chr10:38146468..38146475,-!p12@ZNF248!0.74!4.45!ZNF248;;chr7:14029283..14029311,-!p1@ETV1!0.73!25.69!ETV1;;chr20:50159198..50159299,-!p1@NFATC2!0.73!6.67!NFATC2;;chr10:76585205..76585251,+!p3@KAT6B!0.72!10.01!KAT6B;;chr4:81104985..81105005,+!p4@PRDM8!0.72!5.34!PRDM8;;chr17:41623667..41623682,-!p8@ETV4!0.72!4.56!ETV4;;chr20:22565185..22565223,-!p3@FOXA2!0.72!4.23!FOXA2;;chr6:10415484..10415508,-!p3@TFAP2A!0.72!4.23!TFAP2A;;chr8:102504979..102505010,+!p2@GRHL2!0.72!4.23!GRHL2;;chr8:76319876..76319926,+!p1@HNF4G!0.72!4.23!HNF4G;;chr6:34204672..34204692,+!p1@HMGA1!0.71!527.35!HMGA1;;chr7:19157248..19157268,-!p1@TWIST1!0.71!12.57!TWIST1;;chr19:12163769..12163798,-!p1@ZNF878!0.71!5.56!ZNF878;;chr5:92919452..92919496,+!p11@NR2F1!0.71!4.12!NR2F1;;chr7:27239740..27239759,-!p2@HOXA13!0.71!4.12!HOXA13;;chr6:21597600..21597664,+!p3@SOX4!0.70!7.12!SOX4;;chr2:172949484..172949522,+!p1@DLX1!0.70!4.00!DLX1;;chr20:42295745..42295765,+!p1@MYBL2!0.69!72.52!MYBL2;;chr20:42295713..42295738,+!p2@MYBL2!0.69!25.92!MYBL2;;chr6:10412392..10412409,-!p4@TFAP2A!0.69!4.56!TFAP2A;;chr12:124873852..124873881,-!p3@NCOR2!0.68!25.81!NCOR2;;chr11:65686776..65686787,+!p9@DRAP1!0.68!4.67!DRAP1;;chr10:8095593..8095625,+!p3@GATA3!0.68!4.56!GATA3;;chr7:27192185..27192209,-!p1@HOXA3!0.68!3.78!HOXA3;;chr15:96874012..96874042,+!p2@NR2F2!0.67!38.15!NR2F2;;chr20:32274179..32274213,-!p1@E2F1!0.67!28.03!E2F1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.67!18.91!TAL1;;chr10:35415882..35415941,+!p4@CREM!0.67!18.69!CREM;;chr7:138666053..138666146,-!p1@KIAA1549!0.67!17.24!KIAA1549;;chr1:247171347..247171366,-!p2@ZNF695!0.67!7.23!ZNF695;;chr5:92919100..92919135,+!p3@NR2F1!0.67!4.56!NR2F1;;chrX:128657413..128657456,-!p2@SMARCA1!0.66!36.04!SMARCA1;;chr1:935398..935465,-!p2@HES4!0.66!8.12!HES4;;chr12:26278008..26278024,-!p4@BHLHE41!0.66!4.45!BHLHE41;;chr3:193853927..193853944,+!p1@HES1!0.65!132.59!HES1;;chr12:2986206..2986258,-!p2@FOXM1!0.65!24.36!FOXM1;;chr7:42276822..42276895,-!p2@GLI3!0.65!11.68!GLI3;;chr19:22817119..22817145,+!p1@ZNF492!0.65!6.23!ZNF492;;chr19:17356189..17356221,-!p2@NR2F6!0.65!6.12!NR2F6;;chr11:65687243..65687276,+!p8@DRAP1!0.65!4.89!DRAP1;;chr15:67418099..67418118,+!p16@SMAD3!0.65!3.45!SMAD3;;chr19:3574330..3574393,+!p2@HMG20B!0.64!3.34!HMG20B;;chr10:76586348..76586366,+!p1@KAT6B!0.63!29.14!KAT6B;;chr11:65554563..65554576,+!p2@OVOL1!0.63!3.23!OVOL1;;chr19:23433144..23433204,-!p1@ZNF724P!0.62!16.68!ZNF724P;;chr12:66218152..66218174,+!p10@HMGA2!0.62!3.45!HMGA2;;chr5:88178983..88179012,-!p1@MEF2C!0.61!28.36!MEF2C;;chr8:146228270..146228295,-!p1@ZNF252!0.61!20.36!ZNF252P;;chr9:124976185..124976212,-!p4@LHX6!0.61!3.11!LHX6;;chr7:64838786..64838809,+!p2@ZNF92!0.60!20.02!ZNF92;;chr17:56065729..56065781,-!p2@VEZF1!0.60!15.13!VEZF1;;chr3:24536253..24536328,-!p1@THRB!0.60!6.23!THRB;;chr19:13134457..13134462,+!p5@NFIX!0.60!5.90!NFIX;;chr12:66218443..66218461,+!p8@HMGA2!0.60!4.00!HMGA2;;chr17:41623259..41623278,-!p7@ETV4!0.60!3.56!ETV4;;chr12:66357214..66357233,+!p13@HMGA2!0.60!3.00!HMGA2;;chr6:10413188..10413249,-!p7@TFAP2A!0.60!3.00!TFAP2A;;chr19:53193731..53193767,-!p1@ZNF83!0.59!31.70!ZNF83;;chr19:53496768..53496799,-!p1@ZNF702P!0.59!4.89!ZNF702P;;chr18:56531584..56531646,+!p4@ZNF532!0.59!4.12!ZNF532;;chr5:92919375..92919438,+!p6@NR2F1!0.59!3.23!NR2F1;;chr5:134369879..134369898,-!p2@PITX1!0.59!2.89!PITX1;;chr6:10412576..10412599,-!p5@TFAP2A!0.59!2.89!TFAP2A;;chr17:45928443..45928473,-!p2@SP6!0.59!2.89!SP6;;chr2:63277948..63277974,+!p1@OTX1!0.59!2.89!OTX1;;chr10:114709999..114710031,+!p1@TCF7L2!0.58!81.20!TCF7L2;;chr18:19749541..19749557,+!p1@GATA6!0.58!10.46!GATA6;;chr17:41623716..41623727,-!p12@ETV4!0.58!2.78!ETV4;;chr14:38064495..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| ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0009847,UBERON:0003353,UBERON:0010316 | |||
|fonse_cell_line=FF:0101019,FF:0101120 | |fonse_cell_line=FF:0101019,FF:0101120 | ||
|fonse_cell_line_closure=FF:0101019,FF:0101120 | |fonse_cell_line_closure=FF:0101019,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aPC-3.CNhs11243.10439-106E7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aPC-3.CNhs11243.10439-106E7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aPC-3.CNhs11243.10439-106E7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aPC-3.CNhs11243.10439-106E7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aPC-3.CNhs11243.10439-106E7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10439-106E7 | |id=FF:10439-106E7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101061 | ||
|is_obsolete= | |||
|library_id=CNhs11243 | |||
|library_id_phase_based=2:CNhs11243 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10439 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10439 | |||
|name=prostate cancer cell line:PC-3 | |name=prostate cancer cell line:PC-3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11243,LSID757,release008,COMPLETED | |profile_hcage=CNhs11243,LSID757,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.022902252737959,0,0,0,0,-0.000472542200932013,0,-0.187597644608434,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0387304029364545,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.192053413284882,0,-0.178309527424877,0,0,0,0,0,0,0,0,0.0423050584239529,0,0,0,0,0.959989711438512,0,0,-0.00975670764494878,0,0,0.0947097860717852,0,0,0,0,0,0,0,0.00385001422522216,0,0,0.0458045054759181,0,0,0,0,0,0,0.0601731326147673,0.022902252737959,0,0,0,0,0,-0.0343821378553189,0.079922743942727,0,0,-0.203229755967328,0.223207385898163,0,0.222036778747204,0.0458045054759181,0.0458045054759181,0.152047774667735,-0.0948593740020668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253299396690116,0.125056264354711,0,0,-0.0849035433286077,-0.297326727850328,0,0,0,0,0.0144675856032766,0 | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.06E+09 | ||
|rna_weight_ug=59.243 | |rna_weight_ug=59.243 | ||
|sample_age=62 | |sample_age=62 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2145 | |sample_cell_catalog=RCB2145 | ||
|sample_cell_line=PC-3 | |sample_cell_line=PC-3 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.71265110036965e-260!GO:0043226;organelle;1.2028914529622e-210!GO:0043229;intracellular organelle;2.87842409060661e-210!GO:0043231;intracellular membrane-bound organelle;1.13693126066376e-205!GO:0043227;membrane-bound organelle;2.2137273883815e-205!GO:0005737;cytoplasm;6.09166809619689e-184!GO:0044422;organelle part;8.11981216042034e-160!GO:0044446;intracellular organelle part;1.83399394679892e-158!GO:0044444;cytoplasmic part;1.00166362199481e-129!GO:0032991;macromolecular complex;1.49657901390553e-108!GO:0030529;ribonucleoprotein complex;1.39336427630298e-90!GO:0044237;cellular metabolic process;4.8055052725363e-89!GO:0005634;nucleus;4.87844895678258e-88!GO:0044238;primary metabolic process;4.87844895678258e-88!GO:0044428;nuclear part;4.73652631524822e-83!GO:0043170;macromolecule metabolic process;2.77231662317685e-82!GO:0043233;organelle lumen;7.36142570585563e-82!GO:0031974;membrane-enclosed lumen;7.36142570585563e-82!GO:0003723;RNA binding;2.00987699986775e-74!GO:0005739;mitochondrion;1.04489935507158e-72!GO:0005515;protein binding;9.8915360242923e-69!GO:0006396;RNA processing;3.98437303334655e-57!GO:0043234;protein complex;6.87168586104466e-55!GO:0016043;cellular component organization and biogenesis;9.03754859412548e-54!GO:0005840;ribosome;3.4797145549331e-53!GO:0031981;nuclear lumen;2.63058787611169e-52!GO:0043283;biopolymer metabolic process;6.25015094127314e-52!GO:0006412;translation;1.10670796897478e-50!GO:0031090;organelle membrane;4.78595461558738e-50!GO:0044429;mitochondrial part;4.93265276285033e-48!GO:0015031;protein transport;7.95206637472597e-47!GO:0033036;macromolecule localization;8.97685831932443e-47!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.05166218802022e-46!GO:0003735;structural constituent of ribosome;3.87329733736323e-45!GO:0019538;protein metabolic process;3.72256499313179e-44!GO:0010467;gene expression;3.77321841488045e-44!GO:0045184;establishment of protein localization;1.08339378304356e-43!GO:0008104;protein localization;5.12702131453403e-43!GO:0043228;non-membrane-bound organelle;7.10927713797056e-43!GO:0043232;intracellular non-membrane-bound organelle;7.10927713797056e-43!GO:0031967;organelle envelope;8.69912827477006e-43!GO:0031975;envelope;2.3334193485949e-42!GO:0016071;mRNA metabolic process;3.98168553701926e-42!GO:0044267;cellular protein metabolic process;2.14876065451306e-40!GO:0044260;cellular macromolecule metabolic process;4.48451510155146e-40!GO:0008380;RNA splicing;5.36949937692878e-39!GO:0046907;intracellular transport;1.01840300884717e-38!GO:0006996;organelle organization and biogenesis;1.4036083655254e-38!GO:0033279;ribosomal subunit;1.46682831703813e-38!GO:0009058;biosynthetic process;1.97624810639152e-37!GO:0005829;cytosol;4.11473372251477e-37!GO:0044249;cellular biosynthetic process;4.64516255320533e-37!GO:0009059;macromolecule biosynthetic process;6.54579060086025e-37!GO:0006259;DNA metabolic process;1.42972173724744e-36!GO:0006397;mRNA processing;1.93062071813852e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.76510658759917e-34!GO:0065003;macromolecular complex assembly;9.8139045943267e-33!GO:0006886;intracellular protein transport;1.56770031187673e-32!GO:0005654;nucleoplasm;3.37695496886925e-31!GO:0005740;mitochondrial envelope;2.39189714162669e-30!GO:0022607;cellular component assembly;3.66954661998887e-29!GO:0000166;nucleotide binding;7.79898040307899e-29!GO:0019866;organelle inner membrane;1.3483608805604e-28!GO:0031966;mitochondrial membrane;1.79858132273727e-28!GO:0007049;cell cycle;3.5057929523342e-28!GO:0051649;establishment of cellular localization;7.3258896686662e-28!GO:0051641;cellular localization;3.23692086600522e-27!GO:0005681;spliceosome;4.2532993050267e-27!GO:0005743;mitochondrial inner membrane;9.79853824385413e-27!GO:0044451;nucleoplasm part;2.68390138186091e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.52561886452914e-25!GO:0003676;nucleic acid binding;5.58988442574193e-25!GO:0006119;oxidative phosphorylation;2.11820985160045e-22!GO:0044445;cytosolic part;4.32658879597159e-22!GO:0016462;pyrophosphatase activity;9.27529064567099e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.63779311937603e-21!GO:0012505;endomembrane system;2.1983197557942e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;2.55731554320773e-21!GO:0031980;mitochondrial lumen;5.20800381222858e-21!GO:0005759;mitochondrial matrix;5.20800381222858e-21!GO:0044455;mitochondrial membrane part;6.04462789450365e-21!GO:0017111;nucleoside-triphosphatase activity;7.86519583720494e-21!GO:0005730;nucleolus;8.62836989385077e-21!GO:0015935;small ribosomal subunit;1.67008260467518e-20!GO:0000278;mitotic cell cycle;1.97888587338536e-20!GO:0005694;chromosome;2.26445898272344e-20!GO:0022402;cell cycle process;4.5872838617804e-20!GO:0016070;RNA metabolic process;5.74271801309042e-20!GO:0017076;purine nucleotide binding;7.03423112566556e-20!GO:0006974;response to DNA damage stimulus;1.23714908776107e-19!GO:0032553;ribonucleotide binding;1.99845802348236e-19!GO:0032555;purine ribonucleotide binding;1.99845802348236e-19!GO:0022618;protein-RNA complex assembly;2.80197046025599e-19!GO:0015934;large ribosomal subunit;3.76562950163699e-19!GO:0016874;ligase activity;3.82062205535232e-19!GO:0006457;protein folding;2.02306786100596e-18!GO:0044427;chromosomal part;2.5446677192684e-18!GO:0044265;cellular macromolecule catabolic process;2.57288110063182e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;5.80319010831852e-18!GO:0005761;mitochondrial ribosome;9.81654412974474e-18!GO:0000313;organellar ribosome;9.81654412974474e-18!GO:0006512;ubiquitin cycle;9.81654412974474e-18!GO:0019941;modification-dependent protein catabolic process;9.81654412974474e-18!GO:0043632;modification-dependent macromolecule catabolic process;9.81654412974474e-18!GO:0005524;ATP binding;1.28843929409205e-17!GO:0030554;adenyl nucleotide binding;1.38256857567386e-17!GO:0044257;cellular protein catabolic process;2.27339128745703e-17!GO:0000087;M phase of mitotic cell cycle;2.29264301442757e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.35601971084035e-17!GO:0032559;adenyl ribonucleotide binding;2.46569661491667e-17!GO:0008135;translation factor activity, nucleic acid binding;2.96088613438005e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.28072726639061e-17!GO:0006605;protein targeting;3.625527517749e-17!GO:0006281;DNA repair;3.625527517749e-17!GO:0043285;biopolymer catabolic process;3.94595920446334e-17!GO:0007067;mitosis;4.2424378278474e-17!GO:0005746;mitochondrial respiratory chain;6.17171645654277e-17!GO:0051301;cell division;1.42917714004752e-16!GO:0051276;chromosome organization and biogenesis;1.51651330438147e-16!GO:0022403;cell cycle phase;1.94795279267444e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.59300443912274e-16!GO:0003954;NADH dehydrogenase activity;3.59300443912274e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.59300443912274e-16!GO:0005783;endoplasmic reticulum;4.52011504737449e-16!GO:0000502;proteasome complex (sensu Eukaryota);7.52336607708722e-16!GO:0009057;macromolecule catabolic process;1.0236542647873e-15!GO:0006260;DNA replication;1.156420130829e-15!GO:0042254;ribosome biogenesis and assembly;1.20989233931308e-15!GO:0048193;Golgi vesicle transport;2.29888714163315e-15!GO:0005794;Golgi apparatus;2.56012899105466e-15!GO:0030163;protein catabolic process;4.48696275597328e-15!GO:0044432;endoplasmic reticulum part;6.61780884643385e-15!GO:0008134;transcription factor binding;2.1748067358085e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;2.72616270017485e-14!GO:0000375;RNA splicing, via transesterification reactions;2.72616270017485e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.72616270017485e-14!GO:0000279;M phase;2.7931105132162e-14!GO:0043412;biopolymer modification;3.38579632541181e-14!GO:0016887;ATPase activity;4.46839951809032e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.74067406616319e-14!GO:0042773;ATP synthesis coupled electron transport;5.74067406616319e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.94269664047649e-14!GO:0045271;respiratory chain complex I;5.94269664047649e-14!GO:0005747;mitochondrial respiratory chain complex I;5.94269664047649e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.99825157022558e-14!GO:0051186;cofactor metabolic process;1.06497266710582e-13!GO:0009719;response to endogenous stimulus;1.12695130662773e-13!GO:0044248;cellular catabolic process;1.45627999570278e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.71478539746928e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.86908780290614e-13!GO:0042623;ATPase activity, coupled;2.70619029061023e-13!GO:0051082;unfolded protein binding;3.79587982611416e-13!GO:0005635;nuclear envelope;3.8092326298061e-13!GO:0006399;tRNA metabolic process;4.81136254597126e-13!GO:0006323;DNA packaging;7.46248279019201e-13!GO:0048770;pigment granule;8.06751102309226e-13!GO:0042470;melanosome;8.06751102309226e-13!GO:0016192;vesicle-mediated transport;8.27437783461023e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.57752869727521e-13!GO:0031965;nuclear membrane;1.14420575798825e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.36101673571321e-12!GO:0003743;translation initiation factor activity;1.47478910188504e-12!GO:0016604;nuclear body;1.64586942865981e-12!GO:0044453;nuclear membrane part;2.33028040695809e-12!GO:0006913;nucleocytoplasmic transport;3.55387668365625e-12!GO:0006464;protein modification process;3.8635647911111e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.54463644058915e-12!GO:0051169;nuclear transport;8.79102448272068e-12!GO:0006413;translational initiation;1.02004986152467e-11!GO:0004386;helicase activity;1.05004614350118e-11!GO:0005789;endoplasmic reticulum membrane;1.49188949030258e-11!GO:0008639;small protein conjugating enzyme activity;3.83405322767873e-11!GO:0006446;regulation of translational initiation;4.31005069624298e-11!GO:0000785;chromatin;8.71392203373597e-11!GO:0004842;ubiquitin-protein ligase activity;9.80585964896596e-11!GO:0043687;post-translational protein modification;1.04441593291941e-10!GO:0006364;rRNA processing;1.14534503249176e-10!GO:0006732;coenzyme metabolic process;1.27297643513988e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.56202567264205e-10!GO:0006163;purine nucleotide metabolic process;1.77443158618386e-10!GO:0051726;regulation of cell cycle;1.7980415588751e-10!GO:0006333;chromatin assembly or disassembly;2.10780992773215e-10!GO:0019787;small conjugating protein ligase activity;2.11476674268382e-10!GO:0005643;nuclear pore;2.34374038774766e-10!GO:0008565;protein transporter activity;2.98520650964196e-10!GO:0000074;regulation of progression through cell cycle;3.35316894029195e-10!GO:0016072;rRNA metabolic process;3.64757730868765e-10!GO:0009259;ribonucleotide metabolic process;3.69643311675503e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.88955851054454e-10!GO:0008026;ATP-dependent helicase activity;5.7906992885677e-10!GO:0017038;protein import;6.64193060283323e-10!GO:0016607;nuclear speck;7.42023930937178e-10!GO:0005793;ER-Golgi intermediate compartment;8.59799602921198e-10!GO:0009055;electron carrier activity;9.55578052372094e-10!GO:0006164;purine nucleotide biosynthetic process;1.29796315356183e-09!GO:0065004;protein-DNA complex assembly;1.31954985201797e-09!GO:0065002;intracellular protein transport across a membrane;1.57573848131452e-09!GO:0050657;nucleic acid transport;1.61564844293422e-09!GO:0051236;establishment of RNA localization;1.61564844293422e-09!GO:0050658;RNA transport;1.61564844293422e-09!GO:0006403;RNA localization;2.29288862520753e-09!GO:0009150;purine ribonucleotide metabolic process;2.36460012240766e-09!GO:0003712;transcription cofactor activity;2.40027050037798e-09!GO:0016881;acid-amino acid ligase activity;2.850931678366e-09!GO:0006366;transcription from RNA polymerase II promoter;2.8566298334401e-09!GO:0009141;nucleoside triphosphate metabolic process;3.09973816551002e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.19793269928655e-09!GO:0016779;nucleotidyltransferase activity;5.28577339884184e-09!GO:0009260;ribonucleotide biosynthetic process;5.36518746397356e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.80354667152644e-09!GO:0030532;small nuclear ribonucleoprotein complex;7.44219300310104e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.68363526493892e-09!GO:0004812;aminoacyl-tRNA ligase activity;7.68363526493892e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.68363526493892e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.1579636345501e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.1579636345501e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.26527084680954e-08!GO:0006461;protein complex assembly;1.3069545503217e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.69617683086629e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.69617683086629e-08!GO:0009060;aerobic respiration;1.79236255202067e-08!GO:0015630;microtubule cytoskeleton;1.91995698295481e-08!GO:0043038;amino acid activation;1.96280639637378e-08!GO:0006418;tRNA aminoacylation for protein translation;1.96280639637378e-08!GO:0043039;tRNA aminoacylation;1.96280639637378e-08!GO:0012501;programmed cell death;2.39527062076837e-08!GO:0006915;apoptosis;2.65212096491428e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.91066726925196e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.91066726925196e-08!GO:0019829;cation-transporting ATPase activity;3.05544424123343e-08!GO:0016740;transferase activity;3.74773970764533e-08!GO:0046930;pore complex;4.34559029556136e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.3541317082216e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.97762967506517e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.97762967506517e-08!GO:0015986;ATP synthesis coupled proton transport;6.50538698721721e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.50538698721721e-08!GO:0006334;nucleosome assembly;7.31429079262537e-08!GO:0000775;chromosome, pericentric region;7.51746565829471e-08!GO:0051028;mRNA transport;8.05377107326149e-08!GO:0051188;cofactor biosynthetic process;1.01907475643884e-07!GO:0009056;catabolic process;1.05925473746571e-07!GO:0007005;mitochondrion organization and biogenesis;1.0626386615942e-07!GO:0043623;cellular protein complex assembly;1.16062420997255e-07!GO:0016568;chromatin modification;1.16462037338213e-07!GO:0045333;cellular respiration;1.18852412213649e-07!GO:0009117;nucleotide metabolic process;1.36061978195664e-07!GO:0044431;Golgi apparatus part;1.59952763734838e-07!GO:0031497;chromatin assembly;1.79285132053693e-07!GO:0046034;ATP metabolic process;2.13562072801283e-07!GO:0000245;spliceosome assembly;2.13562072801283e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.39199723485608e-07!GO:0032446;protein modification by small protein conjugation;2.92854309821521e-07!GO:0005768;endosome;3.25336058861354e-07!GO:0016567;protein ubiquitination;3.38620786167846e-07!GO:0006099;tricarboxylic acid cycle;3.68197257449324e-07!GO:0046356;acetyl-CoA catabolic process;3.68197257449324e-07!GO:0008219;cell death;3.93390910478754e-07!GO:0016265;death;3.93390910478754e-07!GO:0050794;regulation of cellular process;5.40513635113863e-07!GO:0005819;spindle;5.62295036345242e-07!GO:0007051;spindle organization and biogenesis;6.20549944259161e-07!GO:0030120;vesicle coat;6.8957456899495e-07!GO:0030662;coated vesicle membrane;6.8957456899495e-07!GO:0051170;nuclear import;7.22872367581727e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.60840292749836e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.84029651011128e-07!GO:0003899;DNA-directed RNA polymerase activity;8.48309404536518e-07!GO:0006084;acetyl-CoA metabolic process;8.48309404536518e-07!GO:0051246;regulation of protein metabolic process;8.54293625881831e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.58508574714804e-07!GO:0000075;cell cycle checkpoint;9.3811807083171e-07!GO:0045259;proton-transporting ATP synthase complex;1.01441374093142e-06!GO:0006754;ATP biosynthetic process;1.02459091450558e-06!GO:0006753;nucleoside phosphate metabolic process;1.02459091450558e-06!GO:0006261;DNA-dependent DNA replication;1.59029559298731e-06!GO:0006606;protein import into nucleus;1.68823413050517e-06!GO:0005667;transcription factor complex;1.9224182367723e-06!GO:0005762;mitochondrial large ribosomal subunit;1.92653996545561e-06!GO:0000315;organellar large ribosomal subunit;1.92653996545561e-06!GO:0006793;phosphorus metabolic process;2.08407454358975e-06!GO:0006796;phosphate metabolic process;2.08407454358975e-06!GO:0000314;organellar small ribosomal subunit;2.1988646007175e-06!GO:0005763;mitochondrial small ribosomal subunit;2.1988646007175e-06!GO:0048475;coated membrane;2.31953011430274e-06!GO:0030117;membrane coat;2.31953011430274e-06!GO:0005657;replication fork;2.35837812246619e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.54699730537147e-06!GO:0043566;structure-specific DNA binding;2.83619732284247e-06!GO:0006613;cotranslational protein targeting to membrane;3.56482861240927e-06!GO:0031324;negative regulation of cellular metabolic process;3.82516841653438e-06!GO:0000151;ubiquitin ligase complex;4.41767385102732e-06!GO:0016310;phosphorylation;4.70933089826001e-06!GO:0009108;coenzyme biosynthetic process;4.74314104213552e-06!GO:0003697;single-stranded DNA binding;4.76967530762956e-06!GO:0009109;coenzyme catabolic process;5.91633918553293e-06!GO:0007010;cytoskeleton organization and biogenesis;6.39075811430881e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.80943497253284e-06!GO:0008094;DNA-dependent ATPase activity;8.04441329855907e-06!GO:0005813;centrosome;9.01616516197135e-06!GO:0000139;Golgi membrane;9.83477249437226e-06!GO:0003724;RNA helicase activity;1.07489403193483e-05!GO:0051329;interphase of mitotic cell cycle;1.15950962097197e-05!GO:0008033;tRNA processing;1.345766744771e-05!GO:0003713;transcription coactivator activity;1.37154492410033e-05!GO:0051187;cofactor catabolic process;1.4614913267133e-05!GO:0016564;transcription repressor activity;1.51966652102192e-05!GO:0009892;negative regulation of metabolic process;1.57501027936985e-05!GO:0016787;hydrolase activity;1.58358940136932e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.58841882666194e-05!GO:0048523;negative regulation of cellular process;1.71997426453407e-05!GO:0005815;microtubule organizing center;2.01992675679284e-05!GO:0008654;phospholipid biosynthetic process;2.07462749498988e-05!GO:0051427;hormone receptor binding;2.3764378671164e-05!GO:0051325;interphase;2.40555450773169e-05!GO:0043021;ribonucleoprotein binding;2.90238981775465e-05!GO:0044440;endosomal part;3.05295298284273e-05!GO:0010008;endosome membrane;3.05295298284273e-05!GO:0016563;transcription activator activity;3.25410429554169e-05!GO:0016853;isomerase activity;3.34965938427255e-05!GO:0016363;nuclear matrix;3.35484473820656e-05!GO:0004298;threonine endopeptidase activity;3.37003578668172e-05!GO:0044452;nucleolar part;3.9620614957321e-05!GO:0006752;group transfer coenzyme metabolic process;4.15216211574749e-05!GO:0048471;perinuclear region of cytoplasm;5.31668440277181e-05!GO:0035257;nuclear hormone receptor binding;5.42183103532617e-05!GO:0003924;GTPase activity;5.43740412526552e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.73362265950428e-05!GO:0016491;oxidoreductase activity;6.15737536708016e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.24133597644589e-05!GO:0030867;rough endoplasmic reticulum membrane;6.32939589329304e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.55408321014277e-05!GO:0005770;late endosome;6.61173301119202e-05!GO:0005798;Golgi-associated vesicle;6.96883513724132e-05!GO:0006626;protein targeting to mitochondrion;7.107971904429e-05!GO:0003682;chromatin binding;7.36852793676456e-05!GO:0007088;regulation of mitosis;7.36852793676456e-05!GO:0000776;kinetochore;7.97327884616619e-05!GO:0006302;double-strand break repair;9.41227180237377e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000104907393535614!GO:0042981;regulation of apoptosis;0.000105508580797879!GO:0043681;protein import into mitochondrion;0.000108200914617766!GO:0051168;nuclear export;0.000118859918592268!GO:0030880;RNA polymerase complex;0.000131631144465042!GO:0043067;regulation of programmed cell death;0.000133159214242381!GO:0031968;organelle outer membrane;0.000134341240062545!GO:0042802;identical protein binding;0.000134422429637343!GO:0050789;regulation of biological process;0.000139485045743954!GO:0006612;protein targeting to membrane;0.000139595993221232!GO:0019899;enzyme binding;0.000148959481441452!GO:0045045;secretory pathway;0.000163036301633423!GO:0005788;endoplasmic reticulum lumen;0.000182294287402027!GO:0007093;mitotic cell cycle checkpoint;0.000189868628464348!GO:0048519;negative regulation of biological process;0.000205567056817316!GO:0019867;outer membrane;0.000207722937786426!GO:0045786;negative regulation of progression through cell cycle;0.000213078727577215!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000217002524872906!GO:0016023;cytoplasmic membrane-bound vesicle;0.000220076822359625!GO:0031988;membrane-bound vesicle;0.000223519282972432!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000224436610187402!GO:0050662;coenzyme binding;0.000227629430115609!GO:0031252;leading edge;0.00025039680592845!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000268191221005041!GO:0005525;GTP binding;0.000271947923874038!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000307173347965415!GO:0000428;DNA-directed RNA polymerase complex;0.000307173347965415!GO:0006383;transcription from RNA polymerase III promoter;0.000319864713161348!GO:0019222;regulation of metabolic process;0.000321427305269029!GO:0006414;translational elongation;0.000359141342793452!GO:0030036;actin cytoskeleton organization and biogenesis;0.000365767887958809!GO:0003714;transcription corepressor activity;0.00037805215180845!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000385959101744568!GO:0006091;generation of precursor metabolites and energy;0.000392276367919466!GO:0003678;DNA helicase activity;0.000395538627948081!GO:0007059;chromosome segregation;0.000396795621332602!GO:0005048;signal sequence binding;0.000406511639896981!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000424482780696021!GO:0005741;mitochondrial outer membrane;0.000428982244543451!GO:0045454;cell redox homeostasis;0.000435539441478209!GO:0008186;RNA-dependent ATPase activity;0.000471473339609492!GO:0003729;mRNA binding;0.000508228243336265!GO:0033116;ER-Golgi intermediate compartment membrane;0.00054324284734376!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000556455819640464!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000579149134426087!GO:0009116;nucleoside metabolic process;0.000588993046993061!GO:0015980;energy derivation by oxidation of organic compounds;0.00060248150187277!GO:0051920;peroxiredoxin activity;0.000616009232192536!GO:0000786;nucleosome;0.000627251293980225!GO:0051252;regulation of RNA metabolic process;0.000633474881851507!GO:0006916;anti-apoptosis;0.000678846236037744!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000684493655240975!GO:0016481;negative regulation of transcription;0.000688650297962939!GO:0003690;double-stranded DNA binding;0.000688876589635421!GO:0048500;signal recognition particle;0.000689682856847999!GO:0000059;protein import into nucleus, docking;0.000690613658423381!GO:0008250;oligosaccharyl transferase complex;0.000704936266590991!GO:0016859;cis-trans isomerase activity;0.000730316098660189!GO:0003684;damaged DNA binding;0.000731423800894247!GO:0005874;microtubule;0.000731423800894247!GO:0031982;vesicle;0.000749983387973266!GO:0005885;Arp2/3 protein complex;0.000753182257139998!GO:0009165;nucleotide biosynthetic process;0.000757995230319723!GO:0007017;microtubule-based process;0.000857103105976039!GO:0046489;phosphoinositide biosynthetic process;0.000889857570970503!GO:0031410;cytoplasmic vesicle;0.000906948898409148!GO:0046474;glycerophospholipid biosynthetic process;0.000907802749887891!GO:0006839;mitochondrial transport;0.000943230275820388!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000966693909118014!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000998450594718664!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00101178377589708!GO:0032508;DNA duplex unwinding;0.00106699548077931!GO:0032392;DNA geometric change;0.00106699548077931!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00110867750045367!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00110867750045367!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00110867750045367!GO:0051287;NAD binding;0.00112222049293983!GO:0007052;mitotic spindle organization and biogenesis;0.00112492214937349!GO:0005769;early endosome;0.00115205452547052!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00118855986711268!GO:0004004;ATP-dependent RNA helicase activity;0.00121253630093932!GO:0006402;mRNA catabolic process;0.00122569103472439!GO:0033673;negative regulation of kinase activity;0.00123822086771881!GO:0006469;negative regulation of protein kinase activity;0.00123822086771881!GO:0004576;oligosaccharyl transferase activity;0.00127289876637451!GO:0032561;guanyl ribonucleotide binding;0.00140639810251311!GO:0019001;guanyl nucleotide binding;0.00140639810251311!GO:0051789;response to protein stimulus;0.00142476062200662!GO:0006986;response to unfolded protein;0.00142476062200662!GO:0030658;transport vesicle membrane;0.00146030545720074!GO:0005684;U2-dependent spliceosome;0.00176618801876395!GO:0006401;RNA catabolic process;0.00176618801876395!GO:0008168;methyltransferase activity;0.00181751658716201!GO:0003746;translation elongation factor activity;0.00183721287383554!GO:0016741;transferase activity, transferring one-carbon groups;0.00183973557628561!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0018998787827349!GO:0015399;primary active transmembrane transporter activity;0.0018998787827349!GO:0030118;clathrin coat;0.00191859066420532!GO:0030029;actin filament-based process;0.00193280078060339!GO:0031072;heat shock protein binding;0.00195290611860243!GO:0006891;intra-Golgi vesicle-mediated transport;0.00197677035854005!GO:0004674;protein serine/threonine kinase activity;0.00202658968593884!GO:0003711;transcription elongation regulator activity;0.00204895761211996!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00204903527421114!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00204903527421114!GO:0051348;negative regulation of transferase activity;0.002104282641863!GO:0008312;7S RNA binding;0.00218586011192992!GO:0016126;sterol biosynthetic process;0.00221824917982599!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00222702209218218!GO:0045047;protein targeting to ER;0.00222702209218218!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0022754901076031!GO:0005773;vacuole;0.0022832537616885!GO:0016272;prefoldin complex;0.00242388423847448!GO:0030133;transport vesicle;0.00250446984930921!GO:0007006;mitochondrial membrane organization and biogenesis;0.00255144340080181!GO:0005791;rough endoplasmic reticulum;0.00255972462353855!GO:0005905;coated pit;0.00266860315950385!GO:0008139;nuclear localization sequence binding;0.00268849659260062!GO:0009112;nucleobase metabolic process;0.00271873576743784!GO:0006338;chromatin remodeling;0.00272265230315326!GO:0030119;AP-type membrane coat adaptor complex;0.002806825848733!GO:0008022;protein C-terminus binding;0.00292289517732618!GO:0015992;proton transport;0.00293141725203381!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.003060177652301!GO:0006818;hydrogen transport;0.0030710241080895!GO:0018196;peptidyl-asparagine modification;0.0030710241080895!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0030710241080895!GO:0030660;Golgi-associated vesicle membrane;0.00311493310834867!GO:0051052;regulation of DNA metabolic process;0.0031515711331838!GO:0043069;negative regulation of programmed cell death;0.00328764328102426!GO:0006310;DNA recombination;0.00328764328102426!GO:0016044;membrane organization and biogenesis;0.00332042942993175!GO:0008092;cytoskeletal protein binding;0.00332393963613706!GO:0006268;DNA unwinding during replication;0.00332393963613706!GO:0030132;clathrin coat of coated pit;0.00343192697837405!GO:0030131;clathrin adaptor complex;0.00352759366998392!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00360813432666331!GO:0032940;secretion by cell;0.00362382929945271!GO:0006595;polyamine metabolic process;0.00384525910200563!GO:0065009;regulation of a molecular function;0.00386666307922148!GO:0051087;chaperone binding;0.00387197182558201!GO:0000910;cytokinesis;0.00398455052204762!GO:0043596;nuclear replication fork;0.00398455052204762!GO:0004860;protein kinase inhibitor activity;0.00404312148751425!GO:0005876;spindle microtubule;0.00407662336289758!GO:0005758;mitochondrial intermembrane space;0.00419178505769384!GO:0000323;lytic vacuole;0.00431961253133461!GO:0005764;lysosome;0.00431961253133461!GO:0016251;general RNA polymerase II transcription factor activity;0.00433037540269737!GO:0007243;protein kinase cascade;0.00447247733561397!GO:0051540;metal cluster binding;0.00451346083746579!GO:0051536;iron-sulfur cluster binding;0.00451346083746579!GO:0031124;mRNA 3'-end processing;0.00482074805287344!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00482074805287344!GO:0006144;purine base metabolic process;0.00483829598224631!GO:0000082;G1/S transition of mitotic cell cycle;0.00484295805124722!GO:0043066;negative regulation of apoptosis;0.00490526132517152!GO:0048037;cofactor binding;0.00494903984415922!GO:0030176;integral to endoplasmic reticulum membrane;0.00495800635782536!GO:0006352;transcription initiation;0.00517658381296044!GO:0051338;regulation of transferase activity;0.00526408490275454!GO:0006650;glycerophospholipid metabolic process;0.00529115314750823!GO:0000792;heterochromatin;0.00532544251740919!GO:0009119;ribonucleoside metabolic process;0.00533075648194476!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00542340299096765!GO:0006611;protein export from nucleus;0.00550040817034903!GO:0030134;ER to Golgi transport vesicle;0.00569677715389922!GO:0006695;cholesterol biosynthetic process;0.00574396622570596!GO:0043488;regulation of mRNA stability;0.00585593644412907!GO:0043487;regulation of RNA stability;0.00585593644412907!GO:0000049;tRNA binding;0.00595519702218766!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00600121238032312!GO:0006378;mRNA polyadenylation;0.00638761320306374!GO:0016584;nucleosome positioning;0.0063968348996448!GO:0007264;small GTPase mediated signal transduction;0.00724128900192311!GO:0030127;COPII vesicle coat;0.00732554123402383!GO:0012507;ER to Golgi transport vesicle membrane;0.00732554123402383!GO:0006607;NLS-bearing substrate import into nucleus;0.00752355289308698!GO:0046966;thyroid hormone receptor binding;0.00756277954706428!GO:0043549;regulation of kinase activity;0.00768853671880082!GO:0009451;RNA modification;0.00774138134701164!GO:0016197;endosome transport;0.00792676795095694!GO:0016408;C-acyltransferase activity;0.00815246446542001!GO:0030384;phosphoinositide metabolic process;0.00817395106218673!GO:0046467;membrane lipid biosynthetic process;0.00817395106218673!GO:0005637;nuclear inner membrane;0.00817549632730177!GO:0000922;spindle pole;0.00847093254401175!GO:0006892;post-Golgi vesicle-mediated transport;0.00875076652616344!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00886856973361578!GO:0015002;heme-copper terminal oxidase activity;0.00886856973361578!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00886856973361578!GO:0004129;cytochrome-c oxidase activity;0.00886856973361578!GO:0031902;late endosome membrane;0.00901139609685543!GO:0008180;signalosome;0.00927630454247952!GO:0030521;androgen receptor signaling pathway;0.00951425001299549!GO:0043022;ribosome binding;0.00952336941951273!GO:0031970;organelle envelope lumen;0.00969906802278387!GO:0006506;GPI anchor biosynthetic process;0.00988005634654331!GO:0015631;tubulin binding;0.0099526929146904!GO:0051539;4 iron, 4 sulfur cluster binding;0.0104941207113902!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0105384267263791!GO:0035258;steroid hormone receptor binding;0.0105558877408093!GO:0006497;protein amino acid lipidation;0.0107540248801659!GO:0043492;ATPase activity, coupled to movement of substances;0.0109141304080607!GO:0006950;response to stress;0.0109723788149171!GO:0006400;tRNA modification;0.011110909871822!GO:0008361;regulation of cell size;0.0111448773228085!GO:0031625;ubiquitin protein ligase binding;0.0116705457711796!GO:0048522;positive regulation of cellular process;0.0116865828007481!GO:0031323;regulation of cellular metabolic process;0.0116919026665061!GO:0030663;COPI coated vesicle membrane;0.0117951872313669!GO:0030126;COPI vesicle coat;0.0117951872313669!GO:0007050;cell cycle arrest;0.0119301804010813!GO:0016049;cell growth;0.0120510794544127!GO:0022890;inorganic cation transmembrane transporter activity;0.0125553090392123!GO:0005832;chaperonin-containing T-complex;0.0127168057753685!GO:0006505;GPI anchor metabolic process;0.0129332310046437!GO:0045859;regulation of protein kinase activity;0.0129661557665403!GO:0006405;RNA export from nucleus;0.013013589276081!GO:0042393;histone binding;0.0130503165455241!GO:0030125;clathrin vesicle coat;0.0135151756002288!GO:0030665;clathrin coated vesicle membrane;0.0135151756002288!GO:0022406;membrane docking;0.0135151756002288!GO:0048278;vesicle docking;0.0135151756002288!GO:0043601;nuclear replisome;0.0142034438521041!GO:0030894;replisome;0.0142034438521041!GO:0003702;RNA polymerase II transcription factor activity;0.0143887363102988!GO:0046128;purine ribonucleoside metabolic process;0.0144276259161068!GO:0042278;purine nucleoside metabolic process;0.0144276259161068!GO:0008632;apoptotic program;0.0144276259161068!GO:0001558;regulation of cell growth;0.0145020451070868!GO:0046483;heterocycle metabolic process;0.0146450710127581!GO:0004527;exonuclease activity;0.0146450710127581!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0151237288066905!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0151746234140232!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0158960448074924!GO:0048487;beta-tubulin binding;0.0162651326068247!GO:0006354;RNA elongation;0.0163023864910968!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0167610679382586!GO:0005938;cell cortex;0.0168611796014965!GO:0006509;membrane protein ectodomain proteolysis;0.0170592608033549!GO:0033619;membrane protein proteolysis;0.0170592608033549!GO:0000725;recombinational repair;0.0173456744708011!GO:0000724;double-strand break repair via homologous recombination;0.0173456744708011!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0175126203991442!GO:0031123;RNA 3'-end processing;0.0175333514668273!GO:0001726;ruffle;0.0180171964058664!GO:0006284;base-excision repair;0.0183331838241213!GO:0043154;negative regulation of caspase activity;0.0184141938022618!GO:0030027;lamellipodium;0.0191776904666205!GO:0000118;histone deacetylase complex;0.0195261458447665!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0196221932077873!GO:0006275;regulation of DNA replication;0.0196221932077873!GO:0000228;nuclear chromosome;0.0198237381152433!GO:0000070;mitotic sister chromatid segregation;0.0198482427525996!GO:0008637;apoptotic mitochondrial changes;0.0199158950527809!GO:0051128;regulation of cellular component organization and biogenesis;0.0202350593772788!GO:0019210;kinase inhibitor activity;0.0202823092344524!GO:0000819;sister chromatid segregation;0.0207786989789897!GO:0030137;COPI-coated vesicle;0.0207786989789897!GO:0000152;nuclear ubiquitin ligase complex;0.0209843934314083!GO:0006376;mRNA splice site selection;0.0210065480345202!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0210065480345202!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0210497875980519!GO:0006417;regulation of translation;0.0210497875980519!GO:0004003;ATP-dependent DNA helicase activity;0.0210531917789738!GO:0019887;protein kinase regulator activity;0.0212508321427382!GO:0004177;aminopeptidase activity;0.0212847553411179!GO:0016301;kinase activity;0.0213893087809974!GO:0017166;vinculin binding;0.0216501085277017!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0227046280439374!GO:0042026;protein refolding;0.0227680610529775!GO:0019843;rRNA binding;0.0227682843573952!GO:0000209;protein polyubiquitination;0.0228236691903234!GO:0000287;magnesium ion binding;0.0230703893539985!GO:0043189;H4/H2A histone acetyltransferase complex;0.0232944487830383!GO:0031577;spindle checkpoint;0.0234559291451845!GO:0022415;viral reproductive process;0.0236710490483772!GO:0045892;negative regulation of transcription, DNA-dependent;0.0236710490483772!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0236710490483772!GO:0031529;ruffle organization and biogenesis;0.0239350983617502!GO:0030659;cytoplasmic vesicle membrane;0.0241578994878993!GO:0006904;vesicle docking during exocytosis;0.024821520638896!GO:0005869;dynactin complex;0.0249583332781665!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0253036051312937!GO:0045039;protein import into mitochondrial inner membrane;0.0253036051312937!GO:0019206;nucleoside kinase activity;0.0253661197673376!GO:0009303;rRNA transcription;0.0255848498018027!GO:0042158;lipoprotein biosynthetic process;0.0256119962134608!GO:0008610;lipid biosynthetic process;0.0261068633816763!GO:0031570;DNA integrity checkpoint;0.0267247096423617!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0270310139351417!GO:0005669;transcription factor TFIID complex;0.0272078856063455!GO:0008017;microtubule binding;0.0283114323968399!GO:0007021;tubulin folding;0.0283319718587848!GO:0008538;proteasome activator activity;0.0289749077283968!GO:0051098;regulation of binding;0.0291153456870118!GO:0008234;cysteine-type peptidase activity;0.02946432273082!GO:0007034;vacuolar transport;0.0294823136301028!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0294873843765203!GO:0050790;regulation of catalytic activity;0.0294873843765203!GO:0045941;positive regulation of transcription;0.0294873843765203!GO:0004518;nuclease activity;0.0303380663626537!GO:0000339;RNA cap binding;0.0303806545462614!GO:0006350;transcription;0.0310447021316137!GO:0051101;regulation of DNA binding;0.0316888500324333!GO:0005666;DNA-directed RNA polymerase III complex;0.0322365920609577!GO:0031371;ubiquitin conjugating enzyme complex;0.033269674067839!GO:0065007;biological regulation;0.0333163888352847!GO:0016585;chromatin remodeling complex;0.0338715302769999!GO:0019783;small conjugating protein-specific protease activity;0.0343752089616057!GO:0045893;positive regulation of transcription, DNA-dependent;0.0347507661534389!GO:0000096;sulfur amino acid metabolic process;0.0350352380901384!GO:0005784;translocon complex;0.0350352380901384!GO:0006007;glucose catabolic process;0.0350352380901384!GO:0045936;negative regulation of phosphate metabolic process;0.0350352380901384!GO:0000086;G2/M transition of mitotic cell cycle;0.0350352380901384!GO:0006779;porphyrin biosynthetic process;0.0350352380901384!GO:0033014;tetrapyrrole biosynthetic process;0.0350352380901384!GO:0006740;NADPH regeneration;0.0350352380901384!GO:0006098;pentose-phosphate shunt;0.0350352380901384!GO:0019207;kinase regulator activity;0.0351402727383271!GO:0016407;acetyltransferase activity;0.0351402727383271!GO:0035267;NuA4 histone acetyltransferase complex;0.0359757313756007!GO:0030433;ER-associated protein catabolic process;0.0359757313756007!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0359757313756007!GO:0044433;cytoplasmic vesicle part;0.0364383077368466!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0365665753192251!GO:0043631;RNA polyadenylation;0.0366226088543053!GO:0032906;transforming growth factor-beta2 production;0.0370966191008209!GO:0032909;regulation of transforming growth factor-beta2 production;0.0370966191008209!GO:0044262;cellular carbohydrate metabolic process;0.0373069824576937!GO:0042769;DNA damage response, detection of DNA damage;0.0380301016917432!GO:0043284;biopolymer biosynthetic process;0.0380453512202797!GO:0006220;pyrimidine nucleotide metabolic process;0.0382824798478793!GO:0006213;pyrimidine nucleoside metabolic process;0.0382824798478793!GO:0006270;DNA replication initiation;0.0384275620044817!GO:0030911;TPR domain binding;0.0392013053467983!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0400743468862675!GO:0015036;disulfide oxidoreductase activity;0.0400841765044503!GO:0006984;ER-nuclear signaling pathway;0.0403648785574988!GO:0005680;anaphase-promoting complex;0.0410483350797107!GO:0040029;regulation of gene expression, epigenetic;0.0414690609192571!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0419111025245198!GO:0051059;NF-kappaB binding;0.0427217042866413!GO:0006778;porphyrin metabolic process;0.0428015193613794!GO:0033013;tetrapyrrole metabolic process;0.0428015193613794!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0428853547904936!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0436281226396251!GO:0010257;NADH dehydrogenase complex assembly;0.0436281226396251!GO:0033108;mitochondrial respiratory chain complex assembly;0.0436281226396251!GO:0030508;thiol-disulfide exchange intermediate activity;0.04372972345598!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0441384905512281!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0441384905512281!GO:0004448;isocitrate dehydrogenase activity;0.0449515805929677!GO:0016790;thiolester hydrolase activity;0.0452197414008541!GO:0004843;ubiquitin-specific protease activity;0.0453184725799056!GO:0000726;non-recombinational repair;0.0453454224517416!GO:0006596;polyamine biosynthetic process;0.0455549150527591!GO:0004523;ribonuclease H activity;0.0456802618748889!GO:0006289;nucleotide-excision repair;0.0460635672512243!GO:0005047;signal recognition particle binding;0.0465356184709019!GO:0051656;establishment of organelle localization;0.0477415369513049!GO:0004532;exoribonuclease activity;0.0479361838999122!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0479361838999122!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0481539547691539!GO:0043407;negative regulation of MAP kinase activity;0.0482519542440759!GO:0000077;DNA damage checkpoint;0.0488204316627334!GO:0005802;trans-Golgi network;0.0489274681736106!GO:0008426;protein kinase C inhibitor activity;0.0495562578646918 | |||
|sample_id=10439 | |sample_id=10439 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=prostate | |sample_tissue=prostate | ||
|top_motifs=FOX{I1,J2}:2.19862116731;ONECUT1,2:1.64954435986;CDC5L:1.54442457324;NKX6-1,2:1.501202115;FOXD3:1.49705176531;PITX1..3:1.49677328809;PDX1:1.41029548334;PAX8:1.35921085829;ZEB1:1.25153667021;FOXQ1:1.23317174646;SNAI1..3:1.2305930035;T:1.14881236995;ZBTB16:1.11421396659;LMO2:1.09166550004;HOX{A6,A7,B6,B7}:1.05513024148;TEF:0.962208803042;IKZF2:0.954633903925;NFY{A,B,C}:0.918391687046;E2F1..5:0.895845426155;ADNP_IRX_SIX_ZHX:0.891510666628;bHLH_family:0.832610186537;NKX2-1,4:0.821921486913;ZNF143:0.820280045876;SP1:0.802553698246;ARID5B:0.786218853326;POU3F1..4:0.761647868862;FOXP1:0.760217651512;NRF1:0.754203094674;AIRE:0.739494619379;HBP1_HMGB_SSRP1_UBTF:0.737679253901;POU1F1:0.718136064699;NKX2-3_NKX2-5:0.694905077589;FOXL1:0.669200258587;ZNF148:0.638150357738;ALX1:0.637412687858;FOXO1,3,4:0.589749758756;DBP:0.589267300739;CRX:0.569354956833;MYOD1:0.564374374714;LHX3,4:0.563406773544;TFDP1:0.5492963144;MYB:0.531767129139;NR6A1:0.50752431257;ELK1,4_GABP{A,B1}:0.497119555665;TEAD1:0.492107298438;HMGA1,2:0.47686634784;XBP1:0.468562030729;AHR_ARNT_ARNT2:0.432681355096;FOX{F1,F2,J1}:0.425345564297;VSX1,2:0.386315609472;FOS_FOS{B,L1}_JUN{B,D}:0.386140290626;POU6F1:0.353958976863;PATZ1:0.332810193634;GFI1:0.296919524887;HOX{A4,D4}:0.250365932068;PAX3,7:0.248851801736;RBPJ:0.226996993759;HIC1:0.226239358579;NR1H4:0.22011924665;POU5F1:0.185963983848;FOXN1:0.182375921006;ZBTB6:0.181131757008;ZNF384:0.180226455394;BACH2:0.178922502996;ALX4:0.155585988495;HSF1,2:0.129616559375;TOPORS:0.123815574144;FOXA2:0.122898898517;GATA4:0.113971056228;HOXA9_MEIS1:0.112642180693;PAX1,9:0.105604023191;SOX2:0.0988913892895;XCPE1{core}:0.0920802270717;SPZ1:0.0796814968219;FOX{D1,D2}:0.0779795616335;SOX{8,9,10}:0.0778838812443;MYBL2:0.0722637406344;HNF1A:0.0706995704736;ESRRA:0.0658479572895;MED-1{core}:0.0489462117563;MAZ:0.041774349363;SOX17:0.0249666104279;POU2F1..3:0.0245494627353;NR5A1,2:0.0140372268972;LEF1_TCF7_TCF7L1,2:-0.0130419621552;GFI1B:-0.0181447745749;ELF1,2,4:-0.0199095015298;BREu{core}:-0.0237612198484;OCT4_SOX2{dimer}:-0.0292253332309;HOX{A5,B5}:-0.0381147222068;TBP:-0.0426297343468;RFX1:-0.0575290544741;PRDM1:-0.0625631896448;TFAP2B:-0.0666093868275;TBX4,5:-0.0703409916083;IKZF1:-0.0917858477707;FOSL2:-0.0980728142274;EVI1:-0.102200823391;DMAP1_NCOR{1,2}_SMARC:-0.102503160788;HIF1A:-0.105262807846;HNF4A_NR2F1,2:-0.128030265297;NKX3-1:-0.128819351337;NFE2:-0.161178705948;NFIX:-0.161712771643;EN1,2:-0.170248979281;FOXM1:-0.174946156173;TLX1..3_NFIC{dimer}:-0.19061325443;GZF1:-0.193297148527;YY1:-0.209290498322;TP53:-0.218571457341;TLX2:-0.241668640128;MEF2{A,B,C,D}:-0.255165405739;UFEwm:-0.258998775733;PPARG:-0.262299492142;STAT5{A,B}:-0.267276067062;EP300:-0.272163818714;ZNF423:-0.274671312557;PAX4:-0.278250204083;NFE2L2:-0.28208832739;CDX1,2,4:-0.293409490074;NHLH1,2:-0.306014588506;GATA6:-0.318761436111;NKX2-2,8:-0.323639574413;SPIB:-0.329002678389;REST:-0.331371840984;ZFP161:-0.350866756017;RREB1:-0.367023448368;ATF6:-0.369405150483;KLF4:-0.377928072338;ATF5_CREB3:-0.389688819221;CEBPA,B_DDIT3:-0.392450806116;HES1:-0.402592851866;BPTF:-0.40957999297;NFIL3:-0.416106803671;ATF2:-0.416819670372;IRF1,2:-0.417830534167;IRF7:-0.421363775675;PRRX1,2:-0.422600791627;NFKB1_REL_RELA:-0.432805440904;NKX3-2:-0.448443630523;TFCP2:-0.45945439896;MTF1:-0.469715163785;EGR1..3:-0.471731704714;PBX1:-0.483656946951;TFAP2{A,C}:-0.490644451084;STAT2,4,6:-0.503066884674;GTF2A1,2:-0.505399213956;CUX2:-0.506191859102;MZF1:-0.511370965159;GTF2I:-0.514898142731;GLI1..3:-0.521032045388;TGIF1:-0.531843463906;RUNX1..3:-0.542985325419;ESR1:-0.558883536329;SRF:-0.572129674911;HLF:-0.610884164333;PAX5:-0.612054436502;SOX5:-0.634509372842;NANOG:-0.641918530057;MTE{core}:-0.643243298652;SPI1:-0.650899692562;RFX2..5_RFXANK_RFXAP:-0.654196528464;ETS1,2:-0.670153103126;RORA:-0.677925886819;PAX6:-0.679353888992;NFATC1..3:-0.704512995005;TAL1_TCF{3,4,12}:-0.72150349503;RXRA_VDR{dimer}:-0.725933696483;ZIC1..3:-0.791347731059;HAND1,2:-0.797361050332;NFE2L1:-0.837050562597;ATF4:-0.859253135144;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.877899816945;EBF1:-0.878675902375;RXR{A,B,G}:-0.905921961048;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.911238031158;JUN:-0.929743693022;STAT1,3:-0.957956187189;NR3C1:-0.973235780553;PAX2:-0.973998419984;FOXP3:-1.00375859641;MYFfamily:-1.01209461623;CREB1:-1.05500333202;AR:-1.07215143623;SREBF1,2:-1.1598182492;HMX1:-1.27700774733;TFAP4:-1.41276656406;GCM1,2:-1.46404610789;ZNF238:-1.46595423458;SMAD1..7,9:-1.86541012903;MAFB:-1.91979882828;NANOG{mouse}:-2.21325505009 | |top_motifs=FOX{I1,J2}:2.19862116731;ONECUT1,2:1.64954435986;CDC5L:1.54442457324;NKX6-1,2:1.501202115;FOXD3:1.49705176531;PITX1..3:1.49677328809;PDX1:1.41029548334;PAX8:1.35921085829;ZEB1:1.25153667021;FOXQ1:1.23317174646;SNAI1..3:1.2305930035;T:1.14881236995;ZBTB16:1.11421396659;LMO2:1.09166550004;HOX{A6,A7,B6,B7}:1.05513024148;TEF:0.962208803042;IKZF2:0.954633903925;NFY{A,B,C}:0.918391687046;E2F1..5:0.895845426155;ADNP_IRX_SIX_ZHX:0.891510666628;bHLH_family:0.832610186537;NKX2-1,4:0.821921486913;ZNF143:0.820280045876;SP1:0.802553698246;ARID5B:0.786218853326;POU3F1..4:0.761647868862;FOXP1:0.760217651512;NRF1:0.754203094674;AIRE:0.739494619379;HBP1_HMGB_SSRP1_UBTF:0.737679253901;POU1F1:0.718136064699;NKX2-3_NKX2-5:0.694905077589;FOXL1:0.669200258587;ZNF148:0.638150357738;ALX1:0.637412687858;FOXO1,3,4:0.589749758756;DBP:0.589267300739;CRX:0.569354956833;MYOD1:0.564374374714;LHX3,4:0.563406773544;TFDP1:0.5492963144;MYB:0.531767129139;NR6A1:0.50752431257;ELK1,4_GABP{A,B1}:0.497119555665;TEAD1:0.492107298438;HMGA1,2:0.47686634784;XBP1:0.468562030729;AHR_ARNT_ARNT2:0.432681355096;FOX{F1,F2,J1}:0.425345564297;VSX1,2:0.386315609472;FOS_FOS{B,L1}_JUN{B,D}:0.386140290626;POU6F1:0.353958976863;PATZ1:0.332810193634;GFI1:0.296919524887;HOX{A4,D4}:0.250365932068;PAX3,7:0.248851801736;RBPJ:0.226996993759;HIC1:0.226239358579;NR1H4:0.22011924665;POU5F1:0.185963983848;FOXN1:0.182375921006;ZBTB6:0.181131757008;ZNF384:0.180226455394;BACH2:0.178922502996;ALX4:0.155585988495;HSF1,2:0.129616559375;TOPORS:0.123815574144;FOXA2:0.122898898517;GATA4:0.113971056228;HOXA9_MEIS1:0.112642180693;PAX1,9:0.105604023191;SOX2:0.0988913892895;XCPE1{core}:0.0920802270717;SPZ1:0.0796814968219;FOX{D1,D2}:0.0779795616335;SOX{8,9,10}:0.0778838812443;MYBL2:0.0722637406344;HNF1A:0.0706995704736;ESRRA:0.0658479572895;MED-1{core}:0.0489462117563;MAZ:0.041774349363;SOX17:0.0249666104279;POU2F1..3:0.0245494627353;NR5A1,2:0.0140372268972;LEF1_TCF7_TCF7L1,2:-0.0130419621552;GFI1B:-0.0181447745749;ELF1,2,4:-0.0199095015298;BREu{core}:-0.0237612198484;OCT4_SOX2{dimer}:-0.0292253332309;HOX{A5,B5}:-0.0381147222068;TBP:-0.0426297343468;RFX1:-0.0575290544741;PRDM1:-0.0625631896448;TFAP2B:-0.0666093868275;TBX4,5:-0.0703409916083;IKZF1:-0.0917858477707;FOSL2:-0.0980728142274;EVI1:-0.102200823391;DMAP1_NCOR{1,2}_SMARC:-0.102503160788;HIF1A:-0.105262807846;HNF4A_NR2F1,2:-0.128030265297;NKX3-1:-0.128819351337;NFE2:-0.161178705948;NFIX:-0.161712771643;EN1,2:-0.170248979281;FOXM1:-0.174946156173;TLX1..3_NFIC{dimer}:-0.19061325443;GZF1:-0.193297148527;YY1:-0.209290498322;TP53:-0.218571457341;TLX2:-0.241668640128;MEF2{A,B,C,D}:-0.255165405739;UFEwm:-0.258998775733;PPARG:-0.262299492142;STAT5{A,B}:-0.267276067062;EP300:-0.272163818714;ZNF423:-0.274671312557;PAX4:-0.278250204083;NFE2L2:-0.28208832739;CDX1,2,4:-0.293409490074;NHLH1,2:-0.306014588506;GATA6:-0.318761436111;NKX2-2,8:-0.323639574413;SPIB:-0.329002678389;REST:-0.331371840984;ZFP161:-0.350866756017;RREB1:-0.367023448368;ATF6:-0.369405150483;KLF4:-0.377928072338;ATF5_CREB3:-0.389688819221;CEBPA,B_DDIT3:-0.392450806116;HES1:-0.402592851866;BPTF:-0.40957999297;NFIL3:-0.416106803671;ATF2:-0.416819670372;IRF1,2:-0.417830534167;IRF7:-0.421363775675;PRRX1,2:-0.422600791627;NFKB1_REL_RELA:-0.432805440904;NKX3-2:-0.448443630523;TFCP2:-0.45945439896;MTF1:-0.469715163785;EGR1..3:-0.471731704714;PBX1:-0.483656946951;TFAP2{A,C}:-0.490644451084;STAT2,4,6:-0.503066884674;GTF2A1,2:-0.505399213956;CUX2:-0.506191859102;MZF1:-0.511370965159;GTF2I:-0.514898142731;GLI1..3:-0.521032045388;TGIF1:-0.531843463906;RUNX1..3:-0.542985325419;ESR1:-0.558883536329;SRF:-0.572129674911;HLF:-0.610884164333;PAX5:-0.612054436502;SOX5:-0.634509372842;NANOG:-0.641918530057;MTE{core}:-0.643243298652;SPI1:-0.650899692562;RFX2..5_RFXANK_RFXAP:-0.654196528464;ETS1,2:-0.670153103126;RORA:-0.677925886819;PAX6:-0.679353888992;NFATC1..3:-0.704512995005;TAL1_TCF{3,4,12}:-0.72150349503;RXRA_VDR{dimer}:-0.725933696483;ZIC1..3:-0.791347731059;HAND1,2:-0.797361050332;NFE2L1:-0.837050562597;ATF4:-0.859253135144;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.877899816945;EBF1:-0.878675902375;RXR{A,B,G}:-0.905921961048;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.911238031158;JUN:-0.929743693022;STAT1,3:-0.957956187189;NR3C1:-0.973235780553;PAX2:-0.973998419984;FOXP3:-1.00375859641;MYFfamily:-1.01209461623;CREB1:-1.05500333202;AR:-1.07215143623;SREBF1,2:-1.1598182492;HMX1:-1.27700774733;TFAP4:-1.41276656406;GCM1,2:-1.46404610789;ZNF238:-1.46595423458;SMAD1..7,9:-1.86541012903;MAFB:-1.91979882828;NANOG{mouse}:-2.21325505009 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10439-106E7;search_select_hide=table117:FF:10439-106E7 | |||
}} | }} | ||
Latest revision as of 14:02, 3 June 2020
| Name: | prostate cancer cell line:PC-3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11243 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11243
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11243
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.397 |
| 10 | 10 | 0.74 |
| 100 | 100 | 0.288 |
| 101 | 101 | 0.491 |
| 102 | 102 | 0.662 |
| 103 | 103 | 0.227 |
| 104 | 104 | 0.689 |
| 105 | 105 | 0.0762 |
| 106 | 106 | 0.00245 |
| 107 | 107 | 0.836 |
| 108 | 108 | 0.734 |
| 109 | 109 | 0.896 |
| 11 | 11 | 0.191 |
| 110 | 110 | 0.672 |
| 111 | 111 | 0.364 |
| 112 | 112 | 0.00463 |
| 113 | 113 | 0.151 |
| 114 | 114 | 0.171 |
| 115 | 115 | 0.423 |
| 116 | 116 | 0.238 |
| 117 | 117 | 0.947 |
| 118 | 118 | 0.139 |
| 119 | 119 | 0.363 |
| 12 | 12 | 0.488 |
| 120 | 120 | 0.938 |
| 121 | 121 | 0.832 |
| 122 | 122 | 0.961 |
| 123 | 123 | 0.518 |
| 124 | 124 | 0.811 |
| 125 | 125 | 0.637 |
| 126 | 126 | 0.81 |
| 127 | 127 | 0.817 |
| 128 | 128 | 0.0893 |
| 129 | 129 | 0.837 |
| 13 | 13 | 0.484 |
| 130 | 130 | 0.196 |
| 131 | 131 | 0.172 |
| 132 | 132 | 0.176 |
| 133 | 133 | 0.226 |
| 134 | 134 | 0.435 |
| 135 | 135 | 0.00833 |
| 136 | 136 | 0.374 |
| 137 | 137 | 0.414 |
| 138 | 138 | 0.364 |
| 139 | 139 | 0.181 |
| 14 | 14 | 0.185 |
| 140 | 140 | 0.00668 |
| 141 | 141 | 0.902 |
| 142 | 142 | 0.41 |
| 143 | 143 | 0.796 |
| 144 | 144 | 0.131 |
| 145 | 145 | 0.762 |
| 146 | 146 | 0.247 |
| 147 | 147 | 0.6 |
| 148 | 148 | 0.059 |
| 149 | 149 | 0.0177 |
| 15 | 15 | 0.825 |
| 150 | 150 | 0.987 |
| 151 | 151 | 0.401 |
| 152 | 152 | 0.379 |
| 153 | 153 | 0.35 |
| 154 | 154 | 0.951 |
| 155 | 155 | 0.944 |
| 156 | 156 | 0.691 |
| 157 | 157 | 0.859 |
| 158 | 158 | 0.123 |
| 159 | 159 | 0.455 |
| 16 | 16 | 0.528 |
| 160 | 160 | 0.41 |
| 161 | 161 | 0.958 |
| 162 | 162 | 0.995 |
| 163 | 163 | 0.272 |
| 164 | 164 | 0.0871 |
| 165 | 165 | 0.848 |
| 166 | 166 | 0.932 |
| 167 | 167 | 0.16 |
| 168 | 168 | 0.278 |
| 169 | 169 | 0.468 |
| 17 | 17 | 0.702 |
| 18 | 18 | 0.0363 |
| 19 | 19 | 0.0485 |
| 2 | 2 | 0.16 |
| 20 | 20 | 0.0859 |
| 21 | 21 | 0.798 |
| 22 | 22 | 0.0611 |
| 23 | 23 | 0.277 |
| 24 | 24 | 0.627 |
| 25 | 25 | 0.523 |
| 26 | 26 | 0.885 |
| 27 | 27 | 0.296 |
| 28 | 28 | 0.891 |
| 29 | 29 | 0.834 |
| 3 | 3 | 0.394 |
| 30 | 30 | 0.934 |
| 31 | 31 | 0.786 |
| 32 | 32 | 0.0207 |
| 33 | 33 | 0.486 |
| 34 | 34 | 0.0769 |
| 35 | 35 | 0.118 |
| 36 | 36 | 0.945 |
| 37 | 37 | 0.312 |
| 38 | 38 | 0.976 |
| 39 | 39 | 0.707 |
| 4 | 4 | 0.348 |
| 40 | 40 | 0.449 |
| 41 | 41 | 0.0926 |
| 42 | 42 | 0.884 |
| 43 | 43 | 0.213 |
| 44 | 44 | 0.194 |
| 45 | 45 | 0.977 |
| 46 | 46 | 0.157 |
| 47 | 47 | 0.983 |
| 48 | 48 | 0.566 |
| 49 | 49 | 0.47 |
| 5 | 5 | 0.267 |
| 50 | 50 | 0.768 |
| 51 | 51 | 0.247 |
| 52 | 52 | 0.266 |
| 53 | 53 | 0.573 |
| 54 | 54 | 0.296 |
| 55 | 55 | 0.631 |
| 56 | 56 | 0.814 |
| 57 | 57 | 0.447 |
| 58 | 58 | 0.172 |
| 59 | 59 | 0.0352 |
| 6 | 6 | 0.852 |
| 60 | 60 | 0.0372 |
| 61 | 61 | 0.621 |
| 62 | 62 | 0.0575 |
| 63 | 63 | 0.807 |
| 64 | 64 | 0.282 |
| 65 | 65 | 0.394 |
| 66 | 66 | 2.70895e-4 |
| 67 | 67 | 0.888 |
| 68 | 68 | 0.557 |
| 69 | 69 | 0.624 |
| 7 | 7 | 0.615 |
| 70 | 70 | 0.176 |
| 71 | 71 | 0.493 |
| 72 | 72 | 0.192 |
| 73 | 73 | 0.453 |
| 74 | 74 | 0.456 |
| 75 | 75 | 0.868 |
| 76 | 76 | 0.857 |
| 77 | 77 | 0.406 |
| 78 | 78 | 0.704 |
| 79 | 79 | 6.65109e-4 |
| 8 | 8 | 0.246 |
| 80 | 80 | 0.0323 |
| 81 | 81 | 0.11 |
| 82 | 82 | 0.0371 |
| 83 | 83 | 0.298 |
| 84 | 84 | 0.647 |
| 85 | 85 | 0.00658 |
| 86 | 86 | 0.383 |
| 87 | 87 | 0.869 |
| 88 | 88 | 0.761 |
| 89 | 89 | 0.276 |
| 9 | 9 | 0.0139 |
| 90 | 90 | 0.55 |
| 91 | 91 | 0.166 |
| 92 | 92 | 0.0935 |
| 93 | 93 | 0.623 |
| 94 | 94 | 0.092 |
| 95 | 95 | 0.411 |
| 96 | 96 | 0.0232 |
| 97 | 97 | 0.521 |
| 98 | 98 | 0.585 |
| 99 | 99 | 0.192 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11243
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101061 PC-3 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101019 (prostate gland cell line sample)
0101033 (prostate cancer cell line sample)
0101061 (PC-3 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0009847 (prostate field)
UBERON:0003353 (epithelium of hindgut)
UBERON:0010316 (germ layer / neural crest)
