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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005316
|accession_numbers=CAGE;DRX007877;DRR008749;DRZ000174;DRZ001559;DRZ011524;DRZ012909
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr20:30433396..30433414,-!p1@FOXS1!1.91!79.74!FOXS1;;chr1:170632285..170632309,+!p1@PRRX1!1.64!47.98!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.55!46.18!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.49!29.95!HOXC5;;chr5:92918919..92918942,+!p1@NR2F1!1.38!99.29!NR2F1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!20.66!ZBED1;;chr1:170632477..170632506,+!p6@PRRX1!1.30!19.00!PRRX1;;chr5:92919375..92919438,+!p6@NR2F1!1.29!19.97!NR2F1;;chr1:170632250..170632277,+!p7@PRRX1!1.27!17.75!PRRX1;;chr3:189349162..189349207,+!p2@TP63!1.27!17.47!TP63;;chr6:10412392..10412409,-!p4@TFAP2A!1.24!18.58!TFAP2A;;chr5:92919100..92919135,+!p3@NR2F1!1.23!19.28!NR2F1;;chr6:10412600..10412637,-!p1@TFAP2A!1.16!22.19!TFAP2A;;chr6:85473156..85473210,-!p2@TBX18!1.16!16.36!TBX18;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.15!13.17!HOXC5;;chr17:70117153..70117174,+!p1@SOX9!1.13!127.58!SOX9;;chr3:157823517..157823562,-!p1@SHOX2!1.12!13.04!SHOX2;;chr1:170633262..170633285,+!p3@PRRX1!1.10!13.45!PRRX1;;chr12:54380404..54380433,+!p3@HOXC10!1.10!11.65!HOXC10;;chr17:8027418..8027432,-!p1@HES7!1.09!11.23!HES7;;chr12:54378923..54378966,+!p1@HOXC10!1.08!11.09!HOXC10;;chr17:46682321..46682362,-!p1@HOXB6!1.08!10.96!HOXB6;;chr10:8096631..8096660,+!p1@GATA3!1.06!12.76!GATA3;;chr1:50889155..50889173,-!p2@DMRTA2!1.04!9.85!DMRTA2;;chr5:92919068..92919082,+!p5@NR2F1!1.00!10.82!NR2F1;;chr5:92918956..92918969,+!p4@NR2F1!1.00!9.98!NR2F1;;chr17:46622205..46622218,-!p3@HOXB2!0.98!9.98!HOXB2;;chr6:10415276..10415341,-!p2@TFAP2A!0.96!9.98!TFAP2A;;chr8:116681409..116681431,-!p2@TRPS1!0.95!22.19!TRPS1;;chr17:46655704..46655718,-!p2@HOXB4!0.95!12.06!HOXB4;;chr17:46622440..46622477,-!p5@HOXB2!0.94!8.60!HOXB2;;chr5:92918894..92918912,+!p2@NR2F1!0.92!25.10!NR2F1;;chr10:8095593..8095625,+!p3@GATA3!0.92!8.74!GATA3;;chr2:176994408..176994492,+!p1@HOXD8!0.91!7.21!HOXD8;;chr9:126774018..126774055,+!p1@LHX2!0.91!7.07!LHX2;;chr17:46622229..46622257,-!p6@HOXB2!0.90!8.18!HOXB2;;chr17:46675558..46675577,-!p2@HOXB6!0.89!6.80!HOXB6;;chr1:170632683..170632696,+!p12@PRRX1!0.88!6.66!PRRX1;;chr5:134369905..134369972,-!p1@PITX1!0.87!9.98!PITX1;;chr17:46675420..46675465,-!p3@HOXB6!0.87!7.49!HOXB6;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.33!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.85!17.33!OSR1;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.57!HOXB2;;chr2:237077022..237077038,-!p1@GBX2!0.85!6.10!GBX2;;chr5:72744445..72744466,-!p2@FOXD1!0.84!10.26!FOXD1;;chr5:72744594..72744609,-!p1@FOXD1!0.83!28.15!FOXD1;;chr1:50889103..50889145,-!p1@DMRTA2!0.83!5.82!DMRTA2;;chr5:92919452..92919496,+!p11@NR2F1!0.83!5.69!NR2F1;;chr22:19748231..19748317,+!p1@TBX1!0.83!5.69!TBX1;;chr2:200323414..200323455,-!p1@SATB2!0.82!12.48!SATB2;;chr6:10415484..10415508,-!p3@TFAP2A!0.82!5.55!TFAP2A;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.55!HOXC9;;chr19:33864571..33864596,+!p2@CEBPG!0.81!14.01!CEBPG;;chr17:46703942..46703964,-!p4@HOXB9!0.80!5.27!HOXB9;;chr6:126102254..126102289,+!p5@NCOA7!0.79!15.39!NCOA7;;chr17:46655730..46655791,-!p1@HOXB4!0.79!13.73!HOXB4;;chr17:46622070..46622109,-!p1@HOXB2!0.79!12.34!HOXB2;;chr1:935398..935465,-!p2@HES4!0.79!11.37!HES4;;chr1:170632723..170632739,+!p8@PRRX1!0.78!4.99!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.78!4.99!ZNF668;;chr22:19746969..19746987,+!p2@TBX1!0.76!4.71!TBX1;;chr3:21792682..21792720,-!p1@ZNF385D!0.76!4.71!ZNF385D;;chr5:92918768..92918783,+!p8@NR2F1!0.76!4.71!NR2F1;;chr6:21593973..21593988,+!p1@SOX4!0.74!178.89!SOX4;;chr13:73633131..73633149,+!p1@KLF5!0.74!53.11!KLF5;;chr6:126102292..126102329,+!p3@NCOA7!0.74!16.22!NCOA7;;chr14:29235961..29236008,+!p1@FOXG1!0.74!4.44!FOXG1;;chr5:92920456..92920488,+!p9@NR2F1!0.73!5.27!NR2F1;;chr1:170632959..170632987,+!p4@PRRX1!0.73!4.85!PRRX1;;chr11:129245526..129245553,+!p1@BARX2!0.72!4.30!BARX2;;chr1:170633058..170633084,+!p5@PRRX1!0.71!4.16!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.71!4.16!KLF17;;chr17:46667628..46667642,-!p2@HOXB3!0.71!4.16!HOXB3;;chr8:67525443..67525459,-!p2@MYBL1!0.70!6.38!MYBL1;;chr17:46621101..46621143,-!p7@HOXB2!0.70!5.69!HOXB2;;chr3:21792585..21792625,-!p2@ZNF385D!0.70!4.58!ZNF385D;;chr20:30433431..30433442,-!p2@FOXS1!0.70!4.02!FOXS1;;chr1:40367530..40367597,-!p1@MYCL1!0.69!7.63!MYCL1;;chr17:46688334..46688385,-!p1@HOXB7!0.69!5.96!HOXB7;;chr8:116673894..116673913,-!p12@TRPS1!0.69!3.88!TRPS1;;chr2:71127699..71127744,+!p1@VAX2!0.68!8.46!VAX2;;chr17:46687959..46688007,-!p2@HOXB7!0.68!5.55!HOXB7;;chr15:76629123..76629151,+!p1@ISL2!0.68!4.30!ISL2;;chr10:64018918..64018936,+!p2@ZNF365!0.68!3.74!ZNF365;;chr10:64134120..64134183,+!p1@ZNF365!0.67!4.58!ZNF365;;chr5:92918860..92918871,+!p10@NR2F1!0.67!4.16!NR2F1;;chr12:96588143..96588185,+!p1@ELK3!0.66!50.48!ELK3;;chr2:200322654..200322707,-!p2@SATB2!0.66!5.55!SATB2;;chr3:21792790..21792824,-!p4@ZNF385D!0.66!3.61!ZNF385D;;chr17:46667594..46667619,-!p1@HOXB3!0.66!3.61!HOXB3;;chr1:170632439..170632465,+!p11@PRRX1!0.66!3.61!PRRX1;;chr17:46621937..46621966,-!p2@HOXB2!0.65!10.68!HOXB2;;chr12:5785363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|expression_enrichment_score=chr20:30433396..30433414,-!p1@FOXS1!1.91!79.74!FOXS1;;chr1:170632285..170632309,+!p1@PRRX1!1.64!47.98!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.55!46.18!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.49!29.95!HOXC5;;chr5:92918919..92918942,+!p1@NR2F1!1.38!99.29!NR2F1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!20.66!ZBED1;;chr1:170632477..170632506,+!p6@PRRX1!1.30!19.00!PRRX1;;chr5:92919375..92919438,+!p6@NR2F1!1.29!19.97!NR2F1;;chr1:170632250..170632277,+!p7@PRRX1!1.27!17.75!PRRX1;;chr3:189349162..189349207,+!p2@TP63!1.27!17.47!TP63;;chr6:10412392..10412409,-!p4@TFAP2A!1.24!18.58!TFAP2A;;chr5:92919100..92919135,+!p3@NR2F1!1.23!19.28!NR2F1;;chr6:10412600..10412637,-!p1@TFAP2A!1.16!22.19!TFAP2A;;chr6:85473156..85473210,-!p2@TBX18!1.16!16.36!TBX18;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.15!13.17!HOXC5;;chr17:70117153..70117174,+!p1@SOX9!1.13!127.58!SOX9;;chr3:157823517..157823562,-!p1@SHOX2!1.12!13.04!SHOX2;;chr1:170633262..170633285,+!p3@PRRX1!1.10!13.45!PRRX1;;chr12:54380404..54380433,+!p3@HOXC10!1.10!11.65!HOXC10;;chr17:8027418..8027432,-!p1@HES7!1.09!11.23!HES7;;chr12:54378923..54378966,+!p1@HOXC10!1.08!11.09!HOXC10;;chr17:46682321..46682362,-!p1@HOXB6!1.08!10.96!HOXB6;;chr10:8096631..8096660,+!p1@GATA3!1.06!12.76!GATA3;;chr1:50889155..50889173,-!p2@DMRTA2!1.04!9.85!DMRTA2;;chr5:92919068..92919082,+!p5@NR2F1!1.00!10.82!NR2F1;;chr5:92918956..92918969,+!p4@NR2F1!1.00!9.98!NR2F1;;chr17:46622205..46622218,-!p3@HOXB2!0.98!9.98!HOXB2;;chr6:10415276..10415341,-!p2@TFAP2A!0.96!9.98!TFAP2A;;chr8:116681409..116681431,-!p2@TRPS1!0.95!22.19!TRPS1;;chr17:46655704..46655718,-!p2@HOXB4!0.95!12.06!HOXB4;;chr17:46622440..46622477,-!p5@HOXB2!0.94!8.60!HOXB2;;chr5:92918894..92918912,+!p2@NR2F1!0.92!25.10!NR2F1;;chr10:8095593..8095625,+!p3@GATA3!0.92!8.74!GATA3;;chr2:176994408..176994492,+!p1@HOXD8!0.91!7.21!HOXD8;;chr9:126774018..126774055,+!p1@LHX2!0.91!7.07!LHX2;;chr17:46622229..46622257,-!p6@HOXB2!0.90!8.18!HOXB2;;chr17:46675558..46675577,-!p2@HOXB6!0.89!6.80!HOXB6;;chr1:170632683..170632696,+!p12@PRRX1!0.88!6.66!PRRX1;;chr5:134369905..134369972,-!p1@PITX1!0.87!9.98!PITX1;;chr17:46675420..46675465,-!p3@HOXB6!0.87!7.49!HOXB6;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.33!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.85!17.33!OSR1;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.57!HOXB2;;chr2:237077022..237077038,-!p1@GBX2!0.85!6.10!GBX2;;chr5:72744445..72744466,-!p2@FOXD1!0.84!10.26!FOXD1;;chr5:72744594..72744609,-!p1@FOXD1!0.83!28.15!FOXD1;;chr1:50889103..50889145,-!p1@DMRTA2!0.83!5.82!DMRTA2;;chr5:92919452..92919496,+!p11@NR2F1!0.83!5.69!NR2F1;;chr22:19748231..19748317,+!p1@TBX1!0.83!5.69!TBX1;;chr2:200323414..200323455,-!p1@SATB2!0.82!12.48!SATB2;;chr6:10415484..10415508,-!p3@TFAP2A!0.82!5.55!TFAP2A;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.55!HOXC9;;chr19:33864571..33864596,+!p2@CEBPG!0.81!14.01!CEBPG;;chr17:46703942..46703964,-!p4@HOXB9!0.80!5.27!HOXB9;;chr6:126102254..126102289,+!p5@NCOA7!0.79!15.39!NCOA7;;chr17:46655730..46655791,-!p1@HOXB4!0.79!13.73!HOXB4;;chr17:46622070..46622109,-!p1@HOXB2!0.79!12.34!HOXB2;;chr1:935398..935465,-!p2@HES4!0.79!11.37!HES4;;chr1:170632723..170632739,+!p8@PRRX1!0.78!4.99!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.78!4.99!ZNF668;;chr22:19746969..19746987,+!p2@TBX1!0.76!4.71!TBX1;;chr3:21792682..21792720,-!p1@ZNF385D!0.76!4.71!ZNF385D;;chr5:92918768..92918783,+!p8@NR2F1!0.76!4.71!NR2F1;;chr6:21593973..21593988,+!p1@SOX4!0.74!178.89!SOX4;;chr13:73633131..73633149,+!p1@KLF5!0.74!53.11!KLF5;;chr6:126102292..126102329,+!p3@NCOA7!0.74!16.22!NCOA7;;chr14:29235961..29236008,+!p1@FOXG1!0.74!4.44!FOXG1;;chr5:92920456..92920488,+!p9@NR2F1!0.73!5.27!NR2F1;;chr1:170632959..170632987,+!p4@PRRX1!0.73!4.85!PRRX1;;chr11:129245526..129245553,+!p1@BARX2!0.72!4.30!BARX2;;chr1:170633058..170633084,+!p5@PRRX1!0.71!4.16!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.71!4.16!KLF17;;chr17:46667628..46667642,-!p2@HOXB3!0.71!4.16!HOXB3;;chr8:67525443..67525459,-!p2@MYBL1!0.70!6.38!MYBL1;;chr17:46621101..46621143,-!p7@HOXB2!0.70!5.69!HOXB2;;chr3:21792585..21792625,-!p2@ZNF385D!0.70!4.58!ZNF385D;;chr20:30433431..30433442,-!p2@FOXS1!0.70!4.02!FOXS1;;chr1:40367530..40367597,-!p1@MYCL1!0.69!7.63!MYCL1;;chr17:46688334..46688385,-!p1@HOXB7!0.69!5.96!HOXB7;;chr8:116673894..116673913,-!p12@TRPS1!0.69!3.88!TRPS1;;chr2:71127699..71127744,+!p1@VAX2!0.68!8.46!VAX2;;chr17:46687959..46688007,-!p2@HOXB7!0.68!5.55!HOXB7;;chr15:76629123..76629151,+!p1@ISL2!0.68!4.30!ISL2;;chr10:64018918..64018936,+!p2@ZNF365!0.68!3.74!ZNF365;;chr10:64134120..64134183,+!p1@ZNF365!0.67!4.58!ZNF365;;chr5:92918860..92918871,+!p10@NR2F1!0.67!4.16!NR2F1;;chr12:96588143..96588185,+!p1@ELK3!0.66!50.48!ELK3;;chr2:200322654..200322707,-!p2@SATB2!0.66!5.55!SATB2;;chr3:21792790..21792824,-!p4@ZNF385D!0.66!3.61!ZNF385D;;chr17:46667594..46667619,-!p1@HOXB3!0.66!3.61!HOXB3;;chr1:170632439..170632465,+!p11@PRRX1!0.66!3.61!PRRX1;;chr17:46621937..46621966,-!p2@HOXB2!0.65!10.68!HOXB2;;chr12:5785363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Line 38: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrial%2520stromal%2520sarcoma%2520cell%2520line%253aOMC-9.CNhs11249.10448-106F7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrial%2520stromal%2520sarcoma%2520cell%2520line%253aOMC-9.CNhs11249.10448-106F7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrial%2520stromal%2520sarcoma%2520cell%2520line%253aOMC-9.CNhs11249.10448-106F7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/endometrial%2520stromal%2520sarcoma%2520cell%2520line%253aOMC-9.CNhs11249.10448-106F7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/endometrial%2520stromal%2520sarcoma%2520cell%2520line%253aOMC-9.CNhs11249.10448-106F7.hg38.nobarcode.ctss.bed.gz
|id=FF:10448-106F7
|id=FF:10448-106F7
|is_a=EFO:0002091;;FF:0000210;;FF:0100400;;FF:0101555
|is_a=EFO:0002091;;FF:0000210;;FF:0100400;;FF:0101555
|is_obsolete=
|is_obsolete=
|library_id=CNhs11249
|library_id_phase_based=2:CNhs11249
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10448
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10448
|name=endometrial stromal sarcoma cell line:OMC-9
|name=endometrial stromal sarcoma cell line:OMC-9
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11249,LSID757,release008,COMPLETED
|profile_hcage=CNhs11249,LSID757,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 85: Line 100:
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|top_motifs=PAX8:1.83213904446;TEF:1.69163250085;EVI1:1.40661411046;ZBTB16:1.32964779504;IKZF2:1.29064479972;FOXQ1:1.28243930599;HBP1_HMGB_SSRP1_UBTF:1.14170332082;NR3C1:1.13888173375;PITX1..3:1.12713245518;LHX3,4:1.08647972754;CDX1,2,4:1.05288541639;NKX2-3_NKX2-5:1.04879983685;AIRE:1.01796637686;PAX4:1.00066484046;HSF1,2:0.996290861544;GTF2A1,2:0.989406683092;STAT5{A,B}:0.982176886638;PDX1:0.948323309553;NKX2-2,8:0.945479298325;ONECUT1,2:0.940396516567;ZNF384:0.923453841302;TLX2:0.904232925931;BPTF:0.890114408209;HMGA1,2:0.834605466347;PBX1:0.809533402662;ARID5B:0.793692688027;NR1H4:0.710626867988;FOXL1:0.709905918302;GATA4:0.696491357252;ELK1,4_GABP{A,B1}:0.695520768496;CDC5L:0.690355914982;NFIX:0.65564349795;HOX{A4,D4}:0.653800771091;ZBTB6:0.629591023121;PRRX1,2:0.617795462788;PRDM1:0.588756015458;HOX{A5,B5}:0.583962552612;NKX2-1,4:0.58115576076;TFDP1:0.577412142011;ZNF143:0.562218403758;CEBPA,B_DDIT3:0.552507010514;SOX17:0.541701491106;PPARG:0.526584856905;NKX3-2:0.519886817506;NRF1:0.498239359745;NKX6-1,2:0.490420864085;FOXA2:0.445130153033;CUX2:0.435040635584;KLF4:0.416378509351;MYB:0.406866882336;POU6F1:0.402722741031;FOXD3:0.396357514822;UFEwm:0.391322066434;POU1F1:0.380793226768;CRX:0.376865247303;EN1,2:0.373098149074;NFY{A,B,C}:0.36044360909;E2F1..5:0.350464558728;ZIC1..3:0.334391768451;FOXP3:0.333641109297;SP1:0.333012448299;POU3F1..4:0.32320315491;YY1:0.319948900051;TLX1..3_NFIC{dimer}:0.30911358615;NKX3-1:0.308260708948;IKZF1:0.300665930662;RXR{A,B,G}:0.282716944908;RORA:0.274565990125;RREB1:0.27354489603;T:0.272031146605;HAND1,2:0.250509456484;PAX6:0.187546960701;MYBL2:0.16553411675;TEAD1:0.145642871014;NFE2L2:0.134337840616;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.123319364297;ELF1,2,4:0.10977324331;RBPJ:0.105564334526;ALX4:0.10094575244;SRF:0.097643534772;DMAP1_NCOR{1,2}_SMARC:0.0869993018935;BACH2:0.0519399705069;OCT4_SOX2{dimer}:0.0489601703509;RFX1:0.0451346801518;FOX{I1,J2}:0.0205915807093;FOSL2:0.015408290102;ALX1:0.00574519380287;LEF1_TCF7_TCF7L1,2:-0.0099266307502;NFATC1..3:-0.0102903033103;GFI1:-0.0235829085356;XCPE1{core}:-0.0271652428307;JUN:-0.0276793277359;FOXP1:-0.0276996216309;SOX{8,9,10}:-0.0311624504831;SOX2:-0.0323116823581;RFX2..5_RFXANK_RFXAP:-0.0341708567249;FOXM1:-0.0366516520673;POU5F1:-0.0397470177764;LMO2:-0.0667155132313;SREBF1,2:-0.0737319661838;NFE2:-0.0859419192399;ZNF238:-0.0916850254075;TP53:-0.104098329209;bHLH_family:-0.110206460386;TOPORS:-0.119345998798;IRF1,2:-0.148588358273;FOS_FOS{B,L1}_JUN{B,D}:-0.168012942373;HLF:-0.173136366321;HNF1A:-0.17766021532;ZFP161:-0.180995262771;GCM1,2:-0.18826446559;DBP:-0.196650812852;ATF2:-0.200646240885;HOXA9_MEIS1:-0.211559292111;NR6A1:-0.22390884134;GTF2I:-0.229007752507;ADNP_IRX_SIX_ZHX:-0.23279875652;REST:-0.240055986385;ATF4:-0.250850274863;HNF4A_NR2F1,2:-0.252982057397;GZF1:-0.265293828973;HIC1:-0.268754911766;RUNX1..3:-0.274655671179;MTF1:-0.282936086047;MED-1{core}:-0.296493784254;SOX5:-0.299594188228;GATA6:-0.301445618657;VSX1,2:-0.304290057197;TFAP2B:-0.306409737503;IRF7:-0.307538531295;MZF1:-0.321485845807;SPI1:-0.327815438325;PAX3,7:-0.333469880235;NR5A1,2:-0.334275553937;PAX5:-0.344231984491;NFKB1_REL_RELA:-0.350770766012;NHLH1,2:-0.369852801579;PATZ1:-0.384590308601;EGR1..3:-0.388868917978;ZEB1:-0.395069554792;HES1:-0.399507855632;GFI1B:-0.422508161396;TAL1_TCF{3,4,12}:-0.428655589333;ATF5_CREB3:-0.436048225524;PAX1,9:-0.443806862564;NFIL3:-0.450856084108;FOX{F1,F2,J1}:-0.463507824191;ETS1,2:-0.464656220534;SMAD1..7,9:-0.468324334607;FOX{D1,D2}:-0.469129428323;MYOD1:-0.480477069742;FOXO1,3,4:-0.486880453035;MYFfamily:-0.523459136377;MEF2{A,B,C,D}:-0.527086649743;STAT2,4,6:-0.52878552419;CREB1:-0.535863016608;STAT1,3:-0.54665530913;TFAP2{A,C}:-0.548781973709;ATF6:-0.560111391047;SNAI1..3:-0.568190060523;TFAP4:-0.581875149586;ZNF148:-0.598415276311;AHR_ARNT_ARNT2:-0.608101697193;SPIB:-0.612989031724;TGIF1:-0.646843787945;ESRRA:-0.661884491779;NFE2L1:-0.673074247863;FOXN1:-0.710194402695;MTE{core}:-0.711448848492;MAZ:-0.723397534356;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.727234444991;BREu{core}:-0.738880975784;EP300:-0.746916100491;NANOG{mouse}:-0.770061566738;ESR1:-0.783286381079;HOX{A6,A7,B6,B7}:-0.790410052341;RXRA_VDR{dimer}:-0.807873314081;TFCP2:-0.808443085324;PAX2:-0.85228396717;NANOG:-0.870337145941;AR:-0.925102051391;POU2F1..3:-0.935936579445;ZNF423:-0.957997583061;GLI1..3:-0.968330678869;MAFB:-1.02058588299;TBX4,5:-1.0393008113;SPZ1:-1.14124894727;TBP:-1.1647328499;EBF1:-1.17652477764;XBP1:-1.2947867128;HMX1:-1.54939898501;HIF1A:-1.82791950412
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10448-106F7;search_select_hide=table117:FF:10448-106F7
}}
}}

Latest revision as of 14:02, 3 June 2020

Name:endometrial stromal sarcoma cell line:OMC-9
Species:Human (Homo sapiens)
Library ID:CNhs11249
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueendometrium
dev stage55 year old adult
sexfemale
age55
cell typeunclassifiable
cell lineOMC-9
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005316
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11249 CAGE DRX007877 DRR008749
Accession ID Hg19

Library idBAMCTSS
CNhs11249 DRZ000174 DRZ001559
Accession ID Hg38

Library idBAMCTSS
CNhs11249 DRZ011524 DRZ012909
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0448
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.245
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0564
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD197.33146e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.219
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0768
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0548
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0551
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.00655
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0197
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.201
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.104
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11249

Jaspar motifP-value
MA0002.20.0936
MA0003.10.163
MA0004.10.358
MA0006.10.346
MA0007.10.96
MA0009.10.434
MA0014.10.0311
MA0017.10.793
MA0018.20.137
MA0019.10.146
MA0024.10.265
MA0025.10.841
MA0027.10.578
MA0028.13.04713e-6
MA0029.10.967
MA0030.10.0145
MA0031.10.372
MA0035.20.0721
MA0038.10.384
MA0039.20.008
MA0040.10.0543
MA0041.10.786
MA0042.10.14
MA0043.10.00538
MA0046.10.0472
MA0047.20.362
MA0048.10.00254
MA0050.10.0223
MA0051.10.199
MA0052.16.67663e-5
MA0055.10.00244
MA0057.10.297
MA0058.10.498
MA0059.10.506
MA0060.16.94267e-4
MA0061.10.115
MA0062.20.00108
MA0065.20.544
MA0066.10.377
MA0067.10.181
MA0068.10.0041
MA0069.10.849
MA0070.10.0575
MA0071.10.787
MA0072.10.926
MA0073.10.844
MA0074.10.968
MA0076.11.39387e-5
MA0077.10.521
MA0078.10.218
MA0079.20.628
MA0080.24.64974e-7
MA0081.10.0269
MA0083.10.618
MA0084.10.77
MA0087.10.183
MA0088.10.00833
MA0090.10.368
MA0091.10.0342
MA0092.10.454
MA0093.10.247
MA0099.20.885
MA0100.10.0974
MA0101.10.0836
MA0102.22.07564e-4
MA0103.10.517
MA0104.20.144
MA0105.10.739
MA0106.10.178
MA0107.10.058
MA0108.24.35043e-11
MA0111.10.511
MA0112.20.2
MA0113.10.0557
MA0114.10.319
MA0115.10.45
MA0116.10.787
MA0117.10.467
MA0119.10.168
MA0122.10.593
MA0124.10.579
MA0125.10.791
MA0131.10.543
MA0135.10.118
MA0136.13.79707e-5
MA0137.20.0154
MA0138.20.176
MA0139.10.00518
MA0140.10.197
MA0141.10.544
MA0142.10.237
MA0143.10.754
MA0144.10.0293
MA0145.10.932
MA0146.10.574
MA0147.10.0797
MA0148.10.8
MA0149.10.179
MA0150.10.251
MA0152.10.198
MA0153.10.473
MA0154.10.201
MA0155.10.189
MA0156.10.397
MA0157.10.196
MA0159.10.449
MA0160.10.573
MA0162.10.29
MA0163.10.906
MA0164.10.303
MA0258.10.484
MA0259.10.368



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11249

Novel motifP-value
10.121
100.426
1000.583
1010.552
1020.911
1030.636
1040.67
1050.534
1060.0868
1070.538
1080.95
1090.698
110.59
1100.459
1110.026
1120.317
1130.202
1140.671
1150.377
1160.428
1170.0713
1180.835
1190.113
120.406
1200.12
1210.306
1220.225
1230.955
1240.317
1250.926
1260.0721
1270.591
1280.142
1290.366
130.0395
1300.921
1310.96
1320.621
1330.587
1340.103
1350.265
1360.778
1370.312
1380.502
1390.0288
140.84
1400.993
1410.188
1420.949
1430.593
1440.331
1450.315
1460.162
1470.984
1480.27
1490.473
150.684
1500.521
1510.157
1520.32
1530.303
1540.273
1550.696
1560.675
1570.541
1580.516
1590.882
160.898
1600.347
1610.162
1620.196
1630.784
1640.249
1650.985
1661
1670.0857
1680.244
1690.695
170.762
180.0241
190.969
20.00313
200.0524
210.0506
220.852
230.368
240.2
250.24
260.363
270.302
280.374
290.234
30.116
300.392
310.83
320.0143
330.749
340.287
350.77
360.296
370.393
380.764
390.826
40.341
400.899
410.0814
420.0828
430.754
440.426
450.327
460.451
470.35
480.231
490.908
50.619
500.962
510.985
520.0281
530.231
540.338
550.984
560.574
570.438
580.342
590.175
60.751
600.287
610.441
620.928
630.634
640.979
650.53
660.00127
670.301
680.0351
690.568
70.583
700.775
710.403
720.996
730.966
740.385
750.069
760.499
770.91
780.439
790.749
80.264
800.0627
810.29
820.332
830.385
840.588
850.152
860.914
870.387
880.817
890.0125
90.104
900.0334
910.558
920.38
930.596
940.955
950.859
960.17
970.711
980.549
990.427



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11249


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002149 (epithelial cell of uterus)
0002255 (stromal cell of endometrium)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
120 (female reproductive organ cancer)
1115 (sarcoma)
3001 (female reproductive endometrioid cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0101555 (endometrial cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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