FF:10469-106I1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005841 | ||
|accession_numbers=CAGE;DRX007989;DRR008861;DRZ000286;DRZ001671;DRZ011636;DRZ013021 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001052,UBERON:0000160,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3119 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3119 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101532 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:46682321..46682362,-!p1@HOXB6!1.94!86.32!HOXB6;;chr5:149546334..149546364,+!p1@CDX1!1.94!86.32!CDX1;;chr1:201979743..201979762,+!p1@ELF3!1.93!84.92!ELF3;;chr20:55204351..55204377,+!p1@TFAP2C!1.88!95.29!TFAP2C;;chr11:65554528..65554546,+!p1@OVOL1!1.81!63.62!OVOL1;;chr13:28543431..28543487,-!p1@CDX2!1.73!52.97!CDX2;;chr17:45928521..45928539,-!p1@SP6!1.73!52.97!SP6;;chr11:65554563..65554576,+!p2@OVOL1!1.71!49.89!OVOL1;;chr9:20621927..20621996,-!p3@MLLT3!1.70!81.84!MLLT3;;chr1:201979703..201979721,+!p2@ELF3!1.69!47.65!ELF3;;chr13:73633131..73633149,+!p1@KLF5!1.64!435.54!KLF5;;chr5:137804405..137804444,+!p3@EGR1!1.61!47.09!EGR1;;chr13:28543285..28543314,-!p2@CDX2!1.61!39.52!CDX2;;chr1:209979467..209979494,-!p1@IRF6!1.59!42.60!IRF6;;chr8:102504651..102504683,+!p1@GRHL2!1.52!31.95!GRHL2;;chr20:42984330..42984364,+!p2@HNF4A!1.51!31.67!HNF4A;;chr11:61520075..61520136,+!p1@C11orf9!1.50!63.06!C11orf9;;chr18:19749541..19749557,+!p1@GATA6!1.45!82.68!GATA6;;chr12:52445218..52445237,+!p1@NR4A1!1.44!318.39!NR4A1;;chr4:4861385..4861398,+!p1@MSX1!1.44!75.95!MSX1;;chr5:2751762..2751784,-!p1@IRX2!1.35!21.58!IRX2;;chr11:129245526..129245553,+!p1@BARX2!1.35!21.30!BARX2;;chr13:28543388..28543406,-!p3@CDX2!1.33!20.46!CDX2;;chr9:20621834..20621884,-!p5@MLLT3!1.32!19.90!MLLT3;;chr5:153857778..153857794,-!p1@HAND1!1.31!19.34!HAND1;;chr17:41622925..41622976,-!p3@ETV4!1.28!26.91!ETV4;;chr17:48072574..48072597,-!p1@DLX3!1.28!17.94!DLX3;;chr6:1312325..1312340,+!p1@FOXQ1!1.27!28.59!FOXQ1;;chr17:46667594..46667619,-!p1@HOXB3!1.26!17.10!HOXB3;;chr17:59477233..59477263,+!p1@TBX2!1.25!51.29!TBX2;;chr3:128206762..128206781,-!p2@GATA2!1.24!100.62!GATA2;;chr19:45971246..45971265,+!p1@FOSB!1.23!289.52!FOSB;;chr17:41622765..41622821,-!p2@ETV4!1.23!24.38!ETV4;;chr17:59477275..59477286,+!p3@TBX2!1.23!21.02!TBX2;;chr6:126240380..126240430,+!p2@NCOA7!1.22!39.80!NCOA7;;chr16:85932760..85932775,+!p1@IRF8!1.22!15.41!IRF8;;chr8:99956662..99956684,+!p1@OSR2!1.20!22.98!OSR2;;chr17:46703687..46703740,-!p1@HOXB9!1.20!14.85!HOXB9;;chr6:144329384..144329405,-!p1@PLAGL1!1.19!166.76!PLAGL1;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.42!ZNF385A;;chr5:137801160..137801176,+!p1@EGR1!1.18!1368.01!EGR1;;chr13:41635512..41635539,-!p2@ELF1!1.18!78.20!ELF1;;chr5:137804357..137804390,+!p4@EGR1!1.18!16.54!EGR1;;chr21:38071430..38071456,+!p1@SIM2!1.18!14.29!SIM2;;chr7:27179814..27179840,-!p4@HOXA3!1.18!14.01!HOXA3;;chr19:33865009..33865090,+!p3@CEBPG!1.14!17.10!CEBPG;;chr13:72441315..72441454,-!p1@DACH1!1.13!25.22!DACH1;;chr6:19837592..19837621,+!p1@ID4!1.11!73.15!ID4;;chr10:64576105..64576133,-!p1@EGR2!1.11!24.38!EGR2;;chr18:19749386..19749404,+!p2@GATA6!1.10!16.54!GATA6;;chr3:128207349..128207386,-!p3@GATA2!1.10!11.49!GATA2;;chr15:96869255..96869291,+!p6@NR2F2!1.09!20.46!NR2F2;;chr19:33793430..33793447,-!p1@CEBPA!1.08!46.53!CEBPA;;chr1:164528410..164528428,+!p1@PBX1!1.06!79.88!PBX1;;chr13:28543316..28543329,-!p4@CDX2!1.06!10.37!CDX2;;chr17:41622731..41622764,-!p5@ETV4!1.06!10.37!ETV4;;chr1:212782094..212782109,+!p1@ATF3!1.05!281.39!ATF3;;chr10:63809013..63809041,+!p3@ARID5B!1.05!56.90!ARID5B;;chr6:126240442..126240459,+!p4@NCOA7!1.05!13.17!NCOA7;;chr11:34645791..34645836,+!p3@EHF!1.04!10.09!EHF;;chr12:54785054..54785072,-!p4@ZNF385A!1.03!10.93!ZNF385A;;chr11:65667846..65667868,-!p1@FOSL1!1.02!252.81!FOSL1;;chr7:97840743..97840786,+!p1@BHLHA15!1.02!9.53!BHLHA15;;chr14:75745523..75745537,+!p1@FOS!1.01!1128.10!FOS;;chr11:64764435..64764449,-!p1@BATF2!1.01!12.89!BATF2;;chr17:41623692..41623715,-!p1@ETV4!1.00!39.24!ETV4;;chr9:20622444..20622468,-!p2@MLLT3!1.00!29.71!MLLT3;;chr5:134369905..134369972,-!p1@PITX1!1.00!14.01!PITX1;;chr7:27192185..27192209,-!p1@HOXA3!1.00!8.97!HOXA3;;chr11:2292226..2292270,-!p1@ASCL2!1.00!8.97!ASCL2;;chr1:6479968..6479986,-!p1@HES2!1.00!8.97!HES2;;chr3:69788576..69788648,+!p1@MITF!0.99!47.65!MITF;;chr19:926001..926046,+!p1@ARID3A!0.98!30.27!ARID3A;;chr6:126102292..126102329,+!p3@NCOA7!0.98!29.15!NCOA7;;chr1:24645832..24645853,+!p1@GRHL3!0.97!8.41!GRHL3;;chr10:114710098..114710130,+!p2@TCF7L2!0.96!63.62!TCF7L2;;chr19:45579725..45579743,-!p1@ZNF296!0.96!37.28!ZNF296;;chr12:66218598..66218645,+!p2@HMGA2!0.95!38.12!HMGA2;;chr5:137804484..137804498,+!p2@EGR1!0.95!33.07!EGR1;;chr12:54366975..54367001,+!p1@HOXC11!0.95!7.85!HOXC11;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.95!7.85!MEF2B;;chr19:926055..926068,+!p2@ARID3A!0.94!17.38!ARID3A;;chr2:70314240..70314256,+!p4@PCBP1!0.94!16.26!PCBP1;;chr13:28543253..28543276,-!p5@CDX2!0.93!7.57!CDX2;;chr21:40177845..40177863,+!p1@ETS2!0.92!453.48!ETS2;;chr5:134369879..134369898,-!p2@PITX1!0.92!7.29!PITX1;;chr17:46703212..46703238,-!p2@HOXB9!0.92!7.29!HOXB9;;chr16:69599899..69599919,+!p2@NFAT5!0.91!84.92!NFAT5;;chr12:80084737..80084763,-!p3@PAWR!0.91!27.75!PAWR;;chr15:96869114..96869160,+!p11@NR2F2!0.91!9.81!NR2F2;;chr17:41622834..41622883,-!p6@ETV4!0.91!8.69!ETV4;;chr6:21597600..21597664,+!p3@SOX4!0.90!11.77!SOX4;;chr17:46687959..46688007,-!p2@HOXB7!0.90!9.81!HOXB7;;chr11:67007477..67007493,+!p2@KDM2A!0.89!59.98!KDM2A;;chr15:60884706..60884743,-!p1@RORA!0.89!36.72!RORA;;chr2:10091815..10091864,+!p1@GRHL1!0.89!9.25!GRHL1;;chr20:50418972..50419029,-!p1@SALL4!0.89!6.73!SALL4;;chr1:164528384..164528409,+!p3@PBX1!0.87!21.02!PBX1;;chr12:54366949..54366973,+!p3@HOXC11!0.87!6.45!HOXC11;;chr1:164528445..164528459,+!p2@PBX1!0.86!20.46!PBX1;;chr10:63661437..63661465,+!p2@ARID5B!0.85!123.88!ARID5B;;chr1:204042233..204042249,+!p1@SOX13!0.85!40.92!SOX13;;chr6:126240356..126240379,+!p7@NCOA7!0.85!7.57!NCOA7;;chr12:66218836..66218888,+!p1@HMGA2!0.84!59.14!HMGA2;;chr1:935398..935465,-!p2@HES4!0.84!12.61!HES4;;chr3:24536253..24536328,-!p1@THRB!0.84!11.49!THRB;;chr20:42984073..42984085,+!p5@HNF4A!0.84!5.89!HNF4A;;chr19:12902289..12902307,+!p1@JUNB!0.83!1405.00!JUNB;;chr17:59477197..59477212,+!p2@TBX2!0.83!10.37!TBX2;;chr3:12330560..12330579,+!p1@PPARG!0.83!6.73!PPARG;;chr1:119530493..119530572,-!p1@TBX15!0.82!5.61!TBX15;;chr13:72441074..72441172,-!p2@DACH1!0.82!5.61!DACH1;;chr17:70117153..70117174,+!p1@SOX9!0.81!61.10!SOX9;;chr4:56412978..56413003,-!p1@CLOCK!0.81!14.01!CLOCK;;chr5:124084493..124084524,-!p2@ZNF608!0.81!12.89!ZNF608;;chr10:70320074..70320106,+!p1@TET1!0.81!11.49!TET1;;chr10:63809106..63809127,+!p1@ARID5B!0.80!77.07!ARID5B;;chr6:106534230..106534254,+!p2@PRDM1!0.80!14.29!PRDM1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.79!49.61!PPP1R13L;;chr20:48599506..48599526,+!p1@SNAI1!0.79!35.87!SNAI1;;chr22:38597987..38598021,+!p2@MAFF!0.79!34.19!MAFF;;chr2:85360499..85360598,+!p1@TCF7L1!0.79!31.11!TCF7L1;;chr6:34204672..34204692,+!p1@HMGA1!0.78!623.89!HMGA1;;chr3:193853927..193853944,+!p1@HES1!0.78!178.25!HES1;;chr6:12008986..12009016,+!p3@HIVEP1!0.78!16.82!HIVEP1;;chr15:96869292..96869320,+!p15@NR2F2!0.78!7.57!NR2F2;;chr19:4153613..4153652,+!p1@CREB3L3!0.78!5.04!CREB3L3;;chr1:24646002..24646013,+!p3@GRHL3!0.78!5.04!GRHL3;;chr13:41635486..41635497,-!p11@ELF1!0.77!7.01!ELF1;;chr2:8822176..8822196,+!p1@ID2!0.76!735.43!ID2;;chr20:42295745..42295765,+!p1@MYBL2!0.76!85.48!MYBL2;;chr15:96874012..96874042,+!p2@NR2F2!0.76!47.09!NR2F2;;chr12:80084303..80084332,-!p1@PAWR!0.76!30.55!PAWR;;chr10:43134001..43134026,-!p1@ZNF33B!0.76!23.54!ZNF33B;;chr18:19749517..19749531,+!p3@GATA6!0.76!8.97!GATA6;;chr17:41623259..41623278,-!p7@ETV4!0.76!5.61!ETV4;;chr17:46692318..46692362,-!p5@HOXB8!0.76!4.76!HOXB8;;chr17:46692457..46692484,-!p2@HOXB8!0.76!4.76!HOXB8;;chr2:113012592..113012671,-!p1@ZC3H8!0.75!87.44!ZC3H8;;chr1:43148855..43148908,+!p4@YBX1!0.75!7.57!YBX1;;chr1:23885981..23886002,-!p1@ID3!0.74!873.33!ID3;;chr8:22550982..22550999,-!p1@EGR3!0.74!13.73!EGR3;;chr1:24645921..24645973,+!p2@GRHL3!0.74!4.48!GRHL3;;chr21:38071403..38071428,+!p2@SIM2!0.74!4.48!SIM2;;chr11:65668011..65668020,-!p3@FOSL1!0.74!4.48!FOSL1;;chr12:54366894..54366922,+!p2@HOXC11!0.74!4.48!HOXC11;;chr19:12163769..12163798,-!p1@ZNF878!0.73!5.89!ZNF878;;chr14:58765217..58765301,+!p1@ARID4A!0.72!43.16!ARID4A;;chr7:138666053..138666146,-!p1@KIAA1549!0.72!19.62!KIAA1549;;chr8:86089417..86089440,+!p2@E2F5!0.72!8.97!E2F5;;chr7:27239703..27239715,-!p1@HOXA13!0.72!4.20!HOXA13;;chr18:19749353..19749367,+!p4@GATA6!0.72!4.20!GATA6;;chr18:19749504..19749515,+!p5@GATA6!0.72!4.20!GATA6;;chr15:96874244..96874259,+!p5@NR2F2!0.71!10.93!NR2F2;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.71!9.53!ZNF395;;chr5:174151553..174151610,+!p1@MSX2!0.71!7.29!MSX2;;chr6:106534192..106534224,+!p1@PRDM1!0.70!12.61!PRDM1;;chr12:19592405..19592492,+!p2@AEBP2!0.69!37.84!AEBP2;;chr7:102985288..102985310,-!p2@DNAJC2!0.69!10.09!DNAJC2;;chr6:168227611..168227624,+!p2@MLLT4!0.69!5.89!MLLT4;;chr5:174151612..174151633,+!p2@MSX2!0.69!3.92!MSX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.69!3.92!HOXC5;;chr17:7493405..7493419,-!p1@SOX15!0.69!3.92!SOX15;;chr17:8027418..8027432,-!p1@HES7!0.69!3.92!HES7;;chr19:46367576..46367592,+!p1@FOXA3!0.69!3.92!FOXA3;;chr1:209979411..209979433,-!p2@IRF6!0.69!3.92!IRF6;;chr11:65667884..65667895,-!p2@FOSL1!0.68!16.54!FOSL1;;chr11:67007445..67007459,+!p4@KDM2A!0.68!7.01!KDM2A;;chr12:66218003..66218018,+!p9@HMGA2!0.68!4.76!HMGA2;;chr13:73636252..73636307,+!p2@KLF5!0.68!4.48!KLF5;;chr12:57914286..57914304,-!p1@DDIT3!0.67!154.99!DDIT3;;chr20:42295713..42295738,+!p2@MYBL2!0.67!24.66!MYBL2;;chr2:70142232..70142251,+!p1@MXD1!0.67!23.82!MXD1;;chr6:126102254..126102289,+!p5@NCOA7!0.67!11.49!NCOA7;;chr5:50679228..50679288,+!p1@ISL1!0.67!3.64!ISL1;;chr17:46667561..46667572,-!p4@HOXB3!0.67!3.64!HOXB3;;chr19:19729477..19729542,-!p1@PBX4!0.66!8.41!PBX4;;chr19:36391434..36391450,-!p1@NFKBID!0.66!7.57!NFKBID;;chr3:32023232..32023273,+!p1@ZNF860!0.66!5.33!ZNF860;;chr10:96122645..96122675,-!p2@NOC3L!0.65!18.78!NOC3L;;chr9:102584128..102584144,+!p3@NR4A3!0.65!7.29!NR4A3;;chr11:19263160..19263176,-!p1@E2F8!0.65!4.20!E2F8;;chr7:102985160..102985273,-!p1@DNAJC2!0.64!99.50!DNAJC2;;chr8:37553292..37553317,+!p1@ZNF703!0.64!94.45!ZNF703;;chr9:20622478..20622525,-!p1@MLLT3!0.64!30.83!MLLT3;;chr1:164528340..164528379,+!p4@PBX1!0.64!9.25!PBX1;;chr17:41623009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| |expression_enrichment_score=chr17:46682321..46682362,-!p1@HOXB6!1.94!86.32!HOXB6;;chr5:149546334..149546364,+!p1@CDX1!1.94!86.32!CDX1;;chr1:201979743..201979762,+!p1@ELF3!1.93!84.92!ELF3;;chr20:55204351..55204377,+!p1@TFAP2C!1.88!95.29!TFAP2C;;chr11:65554528..65554546,+!p1@OVOL1!1.81!63.62!OVOL1;;chr13:28543431..28543487,-!p1@CDX2!1.73!52.97!CDX2;;chr17:45928521..45928539,-!p1@SP6!1.73!52.97!SP6;;chr11:65554563..65554576,+!p2@OVOL1!1.71!49.89!OVOL1;;chr9:20621927..20621996,-!p3@MLLT3!1.70!81.84!MLLT3;;chr1:201979703..201979721,+!p2@ELF3!1.69!47.65!ELF3;;chr13:73633131..73633149,+!p1@KLF5!1.64!435.54!KLF5;;chr5:137804405..137804444,+!p3@EGR1!1.61!47.09!EGR1;;chr13:28543285..28543314,-!p2@CDX2!1.61!39.52!CDX2;;chr1:209979467..209979494,-!p1@IRF6!1.59!42.60!IRF6;;chr8:102504651..102504683,+!p1@GRHL2!1.52!31.95!GRHL2;;chr20:42984330..42984364,+!p2@HNF4A!1.51!31.67!HNF4A;;chr11:61520075..61520136,+!p1@C11orf9!1.50!63.06!C11orf9;;chr18:19749541..19749557,+!p1@GATA6!1.45!82.68!GATA6;;chr12:52445218..52445237,+!p1@NR4A1!1.44!318.39!NR4A1;;chr4:4861385..4861398,+!p1@MSX1!1.44!75.95!MSX1;;chr5:2751762..2751784,-!p1@IRX2!1.35!21.58!IRX2;;chr11:129245526..129245553,+!p1@BARX2!1.35!21.30!BARX2;;chr13:28543388..28543406,-!p3@CDX2!1.33!20.46!CDX2;;chr9:20621834..20621884,-!p5@MLLT3!1.32!19.90!MLLT3;;chr5:153857778..153857794,-!p1@HAND1!1.31!19.34!HAND1;;chr17:41622925..41622976,-!p3@ETV4!1.28!26.91!ETV4;;chr17:48072574..48072597,-!p1@DLX3!1.28!17.94!DLX3;;chr6:1312325..1312340,+!p1@FOXQ1!1.27!28.59!FOXQ1;;chr17:46667594..46667619,-!p1@HOXB3!1.26!17.10!HOXB3;;chr17:59477233..59477263,+!p1@TBX2!1.25!51.29!TBX2;;chr3:128206762..128206781,-!p2@GATA2!1.24!100.62!GATA2;;chr19:45971246..45971265,+!p1@FOSB!1.23!289.52!FOSB;;chr17:41622765..41622821,-!p2@ETV4!1.23!24.38!ETV4;;chr17:59477275..59477286,+!p3@TBX2!1.23!21.02!TBX2;;chr6:126240380..126240430,+!p2@NCOA7!1.22!39.80!NCOA7;;chr16:85932760..85932775,+!p1@IRF8!1.22!15.41!IRF8;;chr8:99956662..99956684,+!p1@OSR2!1.20!22.98!OSR2;;chr17:46703687..46703740,-!p1@HOXB9!1.20!14.85!HOXB9;;chr6:144329384..144329405,-!p1@PLAGL1!1.19!166.76!PLAGL1;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.42!ZNF385A;;chr5:137801160..137801176,+!p1@EGR1!1.18!1368.01!EGR1;;chr13:41635512..41635539,-!p2@ELF1!1.18!78.20!ELF1;;chr5:137804357..137804390,+!p4@EGR1!1.18!16.54!EGR1;;chr21:38071430..38071456,+!p1@SIM2!1.18!14.29!SIM2;;chr7:27179814..27179840,-!p4@HOXA3!1.18!14.01!HOXA3;;chr19:33865009..33865090,+!p3@CEBPG!1.14!17.10!CEBPG;;chr13:72441315..72441454,-!p1@DACH1!1.13!25.22!DACH1;;chr6:19837592..19837621,+!p1@ID4!1.11!73.15!ID4;;chr10:64576105..64576133,-!p1@EGR2!1.11!24.38!EGR2;;chr18:19749386..19749404,+!p2@GATA6!1.10!16.54!GATA6;;chr3:128207349..128207386,-!p3@GATA2!1.10!11.49!GATA2;;chr15:96869255..96869291,+!p6@NR2F2!1.09!20.46!NR2F2;;chr19:33793430..33793447,-!p1@CEBPA!1.08!46.53!CEBPA;;chr1:164528410..164528428,+!p1@PBX1!1.06!79.88!PBX1;;chr13:28543316..28543329,-!p4@CDX2!1.06!10.37!CDX2;;chr17:41622731..41622764,-!p5@ETV4!1.06!10.37!ETV4;;chr1:212782094..212782109,+!p1@ATF3!1.05!281.39!ATF3;;chr10:63809013..63809041,+!p3@ARID5B!1.05!56.90!ARID5B;;chr6:126240442..126240459,+!p4@NCOA7!1.05!13.17!NCOA7;;chr11:34645791..34645836,+!p3@EHF!1.04!10.09!EHF;;chr12:54785054..54785072,-!p4@ZNF385A!1.03!10.93!ZNF385A;;chr11:65667846..65667868,-!p1@FOSL1!1.02!252.81!FOSL1;;chr7:97840743..97840786,+!p1@BHLHA15!1.02!9.53!BHLHA15;;chr14:75745523..75745537,+!p1@FOS!1.01!1128.10!FOS;;chr11:64764435..64764449,-!p1@BATF2!1.01!12.89!BATF2;;chr17:41623692..41623715,-!p1@ETV4!1.00!39.24!ETV4;;chr9:20622444..20622468,-!p2@MLLT3!1.00!29.71!MLLT3;;chr5:134369905..134369972,-!p1@PITX1!1.00!14.01!PITX1;;chr7:27192185..27192209,-!p1@HOXA3!1.00!8.97!HOXA3;;chr11:2292226..2292270,-!p1@ASCL2!1.00!8.97!ASCL2;;chr1:6479968..6479986,-!p1@HES2!1.00!8.97!HES2;;chr3:69788576..69788648,+!p1@MITF!0.99!47.65!MITF;;chr19:926001..926046,+!p1@ARID3A!0.98!30.27!ARID3A;;chr6:126102292..126102329,+!p3@NCOA7!0.98!29.15!NCOA7;;chr1:24645832..24645853,+!p1@GRHL3!0.97!8.41!GRHL3;;chr10:114710098..114710130,+!p2@TCF7L2!0.96!63.62!TCF7L2;;chr19:45579725..45579743,-!p1@ZNF296!0.96!37.28!ZNF296;;chr12:66218598..66218645,+!p2@HMGA2!0.95!38.12!HMGA2;;chr5:137804484..137804498,+!p2@EGR1!0.95!33.07!EGR1;;chr12:54366975..54367001,+!p1@HOXC11!0.95!7.85!HOXC11;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.95!7.85!MEF2B;;chr19:926055..926068,+!p2@ARID3A!0.94!17.38!ARID3A;;chr2:70314240..70314256,+!p4@PCBP1!0.94!16.26!PCBP1;;chr13:28543253..28543276,-!p5@CDX2!0.93!7.57!CDX2;;chr21:40177845..40177863,+!p1@ETS2!0.92!453.48!ETS2;;chr5:134369879..134369898,-!p2@PITX1!0.92!7.29!PITX1;;chr17:46703212..46703238,-!p2@HOXB9!0.92!7.29!HOXB9;;chr16:69599899..69599919,+!p2@NFAT5!0.91!84.92!NFAT5;;chr12:80084737..80084763,-!p3@PAWR!0.91!27.75!PAWR;;chr15:96869114..96869160,+!p11@NR2F2!0.91!9.81!NR2F2;;chr17:41622834..41622883,-!p6@ETV4!0.91!8.69!ETV4;;chr6:21597600..21597664,+!p3@SOX4!0.90!11.77!SOX4;;chr17:46687959..46688007,-!p2@HOXB7!0.90!9.81!HOXB7;;chr11:67007477..67007493,+!p2@KDM2A!0.89!59.98!KDM2A;;chr15:60884706..60884743,-!p1@RORA!0.89!36.72!RORA;;chr2:10091815..10091864,+!p1@GRHL1!0.89!9.25!GRHL1;;chr20:50418972..50419029,-!p1@SALL4!0.89!6.73!SALL4;;chr1:164528384..164528409,+!p3@PBX1!0.87!21.02!PBX1;;chr12:54366949..54366973,+!p3@HOXC11!0.87!6.45!HOXC11;;chr1:164528445..164528459,+!p2@PBX1!0.86!20.46!PBX1;;chr10:63661437..63661465,+!p2@ARID5B!0.85!123.88!ARID5B;;chr1:204042233..204042249,+!p1@SOX13!0.85!40.92!SOX13;;chr6:126240356..126240379,+!p7@NCOA7!0.85!7.57!NCOA7;;chr12:66218836..66218888,+!p1@HMGA2!0.84!59.14!HMGA2;;chr1:935398..935465,-!p2@HES4!0.84!12.61!HES4;;chr3:24536253..24536328,-!p1@THRB!0.84!11.49!THRB;;chr20:42984073..42984085,+!p5@HNF4A!0.84!5.89!HNF4A;;chr19:12902289..12902307,+!p1@JUNB!0.83!1405.00!JUNB;;chr17:59477197..59477212,+!p2@TBX2!0.83!10.37!TBX2;;chr3:12330560..12330579,+!p1@PPARG!0.83!6.73!PPARG;;chr1:119530493..119530572,-!p1@TBX15!0.82!5.61!TBX15;;chr13:72441074..72441172,-!p2@DACH1!0.82!5.61!DACH1;;chr17:70117153..70117174,+!p1@SOX9!0.81!61.10!SOX9;;chr4:56412978..56413003,-!p1@CLOCK!0.81!14.01!CLOCK;;chr5:124084493..124084524,-!p2@ZNF608!0.81!12.89!ZNF608;;chr10:70320074..70320106,+!p1@TET1!0.81!11.49!TET1;;chr10:63809106..63809127,+!p1@ARID5B!0.80!77.07!ARID5B;;chr6:106534230..106534254,+!p2@PRDM1!0.80!14.29!PRDM1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.79!49.61!PPP1R13L;;chr20:48599506..48599526,+!p1@SNAI1!0.79!35.87!SNAI1;;chr22:38597987..38598021,+!p2@MAFF!0.79!34.19!MAFF;;chr2:85360499..85360598,+!p1@TCF7L1!0.79!31.11!TCF7L1;;chr6:34204672..34204692,+!p1@HMGA1!0.78!623.89!HMGA1;;chr3:193853927..193853944,+!p1@HES1!0.78!178.25!HES1;;chr6:12008986..12009016,+!p3@HIVEP1!0.78!16.82!HIVEP1;;chr15:96869292..96869320,+!p15@NR2F2!0.78!7.57!NR2F2;;chr19:4153613..4153652,+!p1@CREB3L3!0.78!5.04!CREB3L3;;chr1:24646002..24646013,+!p3@GRHL3!0.78!5.04!GRHL3;;chr13:41635486..41635497,-!p11@ELF1!0.77!7.01!ELF1;;chr2:8822176..8822196,+!p1@ID2!0.76!735.43!ID2;;chr20:42295745..42295765,+!p1@MYBL2!0.76!85.48!MYBL2;;chr15:96874012..96874042,+!p2@NR2F2!0.76!47.09!NR2F2;;chr12:80084303..80084332,-!p1@PAWR!0.76!30.55!PAWR;;chr10:43134001..43134026,-!p1@ZNF33B!0.76!23.54!ZNF33B;;chr18:19749517..19749531,+!p3@GATA6!0.76!8.97!GATA6;;chr17:41623259..41623278,-!p7@ETV4!0.76!5.61!ETV4;;chr17:46692318..46692362,-!p5@HOXB8!0.76!4.76!HOXB8;;chr17:46692457..46692484,-!p2@HOXB8!0.76!4.76!HOXB8;;chr2:113012592..113012671,-!p1@ZC3H8!0.75!87.44!ZC3H8;;chr1:43148855..43148908,+!p4@YBX1!0.75!7.57!YBX1;;chr1:23885981..23886002,-!p1@ID3!0.74!873.33!ID3;;chr8:22550982..22550999,-!p1@EGR3!0.74!13.73!EGR3;;chr1:24645921..24645973,+!p2@GRHL3!0.74!4.48!GRHL3;;chr21:38071403..38071428,+!p2@SIM2!0.74!4.48!SIM2;;chr11:65668011..65668020,-!p3@FOSL1!0.74!4.48!FOSL1;;chr12:54366894..54366922,+!p2@HOXC11!0.74!4.48!HOXC11;;chr19:12163769..12163798,-!p1@ZNF878!0.73!5.89!ZNF878;;chr14:58765217..58765301,+!p1@ARID4A!0.72!43.16!ARID4A;;chr7:138666053..138666146,-!p1@KIAA1549!0.72!19.62!KIAA1549;;chr8:86089417..86089440,+!p2@E2F5!0.72!8.97!E2F5;;chr7:27239703..27239715,-!p1@HOXA13!0.72!4.20!HOXA13;;chr18:19749353..19749367,+!p4@GATA6!0.72!4.20!GATA6;;chr18:19749504..19749515,+!p5@GATA6!0.72!4.20!GATA6;;chr15:96874244..96874259,+!p5@NR2F2!0.71!10.93!NR2F2;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.71!9.53!ZNF395;;chr5:174151553..174151610,+!p1@MSX2!0.71!7.29!MSX2;;chr6:106534192..106534224,+!p1@PRDM1!0.70!12.61!PRDM1;;chr12:19592405..19592492,+!p2@AEBP2!0.69!37.84!AEBP2;;chr7:102985288..102985310,-!p2@DNAJC2!0.69!10.09!DNAJC2;;chr6:168227611..168227624,+!p2@MLLT4!0.69!5.89!MLLT4;;chr5:174151612..174151633,+!p2@MSX2!0.69!3.92!MSX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.69!3.92!HOXC5;;chr17:7493405..7493419,-!p1@SOX15!0.69!3.92!SOX15;;chr17:8027418..8027432,-!p1@HES7!0.69!3.92!HES7;;chr19:46367576..46367592,+!p1@FOXA3!0.69!3.92!FOXA3;;chr1:209979411..209979433,-!p2@IRF6!0.69!3.92!IRF6;;chr11:65667884..65667895,-!p2@FOSL1!0.68!16.54!FOSL1;;chr11:67007445..67007459,+!p4@KDM2A!0.68!7.01!KDM2A;;chr12:66218003..66218018,+!p9@HMGA2!0.68!4.76!HMGA2;;chr13:73636252..73636307,+!p2@KLF5!0.68!4.48!KLF5;;chr12:57914286..57914304,-!p1@DDIT3!0.67!154.99!DDIT3;;chr20:42295713..42295738,+!p2@MYBL2!0.67!24.66!MYBL2;;chr2:70142232..70142251,+!p1@MXD1!0.67!23.82!MXD1;;chr6:126102254..126102289,+!p5@NCOA7!0.67!11.49!NCOA7;;chr5:50679228..50679288,+!p1@ISL1!0.67!3.64!ISL1;;chr17:46667561..46667572,-!p4@HOXB3!0.67!3.64!HOXB3;;chr19:19729477..19729542,-!p1@PBX4!0.66!8.41!PBX4;;chr19:36391434..36391450,-!p1@NFKBID!0.66!7.57!NFKBID;;chr3:32023232..32023273,+!p1@ZNF860!0.66!5.33!ZNF860;;chr10:96122645..96122675,-!p2@NOC3L!0.65!18.78!NOC3L;;chr9:102584128..102584144,+!p3@NR4A3!0.65!7.29!NR4A3;;chr11:19263160..19263176,-!p1@E2F8!0.65!4.20!E2F8;;chr7:102985160..102985273,-!p1@DNAJC2!0.64!99.50!DNAJC2;;chr8:37553292..37553317,+!p1@ZNF703!0.64!94.45!ZNF703;;chr9:20622478..20622525,-!p1@MLLT3!0.64!30.83!MLLT3;;chr1:164528340..164528379,+!p4@PBX1!0.64!9.25!PBX1;;chr17:41623009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44;;chr7:6676930..6676939,+!p3@ENST00000427912!0.27!2.24!ZNF316;;chr11:130184644..130184662,-!p5@ZBTB44!0.27!1.96!ZBTB44;;chr15:57025823..57025832,-!p3@ZNF280D!0.27!1.68!ZNF280D;;chr20:48809000..48809053,+!p12@CEBPB!0.27!1.40!CEBPB;;chr19:20011696..20011705,+!p4@ZNF93!0.27!1.12!ZNF93;;chr6:41514178..41514192,+!p4@FOXP4!0.27!1.12!FOXP4;;chr5:124084466..124084484,-!p6@ZNF608!0.27!0.84!ZNF608;;chr5:133450458..133450469,+!p4@TCF7!0.27!0.84!TCF7;;chr5:138643069..138643082,+!p13@MATR3!0.27!0.84!MATR3;;chr5:180288373..180288380,-!p5@ZFP62!0.27!0.84!ZFP62;;chr6:21597687..21597708,+!p14@SOX4!0.27!0.84!SOX4;;chr7:27153454..27153469,-!p2@HOXA3!0.27!0.84!HOXA3;;chr7:27224842..27224872,-!p1@HOXA11!0.27!0.84!HOXA11;;chr8:144512897..144512903,-!p1@MAFA!0.27!0.84!MAFA;;chr8:76319850..76319870,+!p4@HNF4G!0.27!0.84!HNF4G;;chr8:86089472..86089483,+!p9@E2F5!0.27!0.84!E2F5;;chr9:124976185..124976212,-!p4@LHX6!0.27!0.84!LHX6;;chr15:96869206..96869220,+!p21@NR2F2!0.27!0.84!NR2F2;;chr16:52580805..52580840,-!p3@TOX3!0.27!0.84!TOX3;;chr16:67881647..67881663,-!p3@CENPT!0.27!0.84!CENPT;;chr16:69681215..69681227,+!p17@NFAT5!0.27!0.84!NFAT5;;chr17:41739283..41739297,-!p1@MEOX1!0.27!0.84!MEOX1;;chr17:46675469..46675481,-!p4@HOXB6!0.27!0.84!HOXB6;;chr17:46675558..46675577,-!p2@HOXB6!0.27!0.84!HOXB6;;chr17:46688310..46688323,-!p4@HOXB7!0.27!0.84!HOXB7;;chr17:46692287..46692317,-!p7@HOXB8!0.27!0.84!HOXB8;;chr17:46806035..46806059,-!p2@HOXB13!0.27!0.84!HOXB13;;chr18:45663638..45663643,-!p10@ZBTB7C!0.27!0.84!ZBTB7C;;chr18:56532079..56532095,+!p8@ZNF532!0.27!0.84!ZNF532;;chr2:200320768..200320800,-!p4@SATB2!0.27!0.84!SATB2;;chr2:200323212..200323223,-!p8@SATB2!0.27!0.84!SATB2;;chr2:42795598..42795609,+!p9@MTA3!0.27!0.84!MTA3;;chr3:170098801..170098805,+!p12@SKIL!0.27!0.84!SKIL;;chr3:193854202..193854232,+!p2@HES1!0.27!0.84!HES1;;chr3:69811882..69811898,+!p6@MITF!0.27!0.84!MITF;;chr4:109089095..109089144,-!p6@LEF1!0.27!0.84!LEF1;;chr4:109090075..109090095,-!p2@LEF1!0.27!0.84!LEF1;;chr4:47916225..47916234,-!p5@NFXL1!0.27!0.84!NFXL1;;chr19:39390320..39390346,+!p5@NFKBIB!0.27!0.84!NFKBIB;;chr19:45978387..45978400,+!p16@FOSB!0.27!0.84!FOSB;;chr19:56146455..56146471,+!p19@ZNF580,p7@ZNF581!0.27!0.84!ZNF580;;chr1:154975229..154975247,+!p6@ZBTB7B!0.27!0.84!ZBTB7B;;chr1:199996702..199996732,+!p5@NR5A2!0.27!0.84!NR5A2;;chr1:209979449..209979460,-!p3@IRF6!0.27!0.84!IRF6;;chr1:23886329..23886336,-!p3@ID3!0.27!0.84!ID3;;chr1:40367692..40367703,-!p3@MYCL1!0.27!0.84!MYCL1;;chr1:8763181..8763189,-!p28@RERE!0.27!0.84!RERE;;chr20:49547417..49547424,-!p8@ADNP!0.27!0.84!ADNP;;chr20:50418012..50418032,-!p7@SALL4!0.27!0.84!SALL4;;chr10:60144869..60144887,+!p3@TFAM!0.27!0.84!TFAM;;chr10:63661053..63661079,+!p14@ARID5B!0.27!0.84!ARID5B;;chr10:64018918..64018936,+!p2@ZNF365!0.27!0.84!ZNF365;;chr11:34645764..34645775,+!p9@EHF!0.27!0.84!EHF;;chr11:64073848..64073856,+!p6@ESRRA!0.27!0.84!ESRRA;;chr12:115121802..115121814,-!p5@TBX3!0.27!0.84!TBX3;;chr12:115122318..115122331,-!p2@TBX3!0.27!0.84!TBX3;;chr12:121416340..121416360,+!p1@HNF1A!0.27!0.84!HNF1A;;chr12:52430835..52430843,+!p17@NR4A1!0.27!0.84!NR4A1;;chr12:54332608..54332636,+!p1@HOXC13!0.27!0.84!HOXC13;;chr12:54348702..54348715,+!p2@HOXC12!0.27!0.84!HOXC12;;chr12:54379569..54379583,+!p9@HOXC5!0.27!0.84!HOXC5;;chr12:54380036..54380091,+!p4@HOXC10!0.27!0.84!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!0.27!0.84!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.27!0.84!HOXC5;;chr12:56414795..56414836,+!p4@IKZF4!0.27!0.84!IKZF4;;chr13:28541477..28541493,-!p6@CDX2!0.27!0.84!CDX2;;chr13:72440772..72440847,-!p5@DACH1!0.27!0.84!DACH1;;chr13:72441506..72441562,-!p3@DACH1!0.27!0.84!DACH1;;chr13:73636440..73636451,+!p9@KLF5!0.27!0.84!KLF5;;chr13:79177674..79177701,-!p1@POU4F1!0.27!0.84!POU4F1;;chr14:37131058..37131139,+!p1@PAX9!0.27!0.84!PAX9;;chr9:129376201..129376225,+!p1@LMX1B!0.27!0.84!LMX1B;;chrX:84499056..84499078,+!p3@ZNF711!0.27!0.84!ZNF711;;chr11:65430371..65430399,-!p1@RELA!0.26!116.59!RELA;;chr11:85376121..85376181,-!p1@CREBZF!0.26!50.17!CREBZF;;chr11:66886717..66886762,+!p1@KDM2A!0.26!33.07!KDM2A;;chr1:155826967..155827018,-!p1@GON4L!0.26!28.59!GON4L;;chr19:24216213..24216314,+!p1@ZNF254!0.26!28.31!ZNF254;;chr19:36208877..36208919,+!p1@MLL4!0.26!20.46!MLL4;;chr20:50808290..50808328,-!p1@ZFP64!0.26!18.50!ZFP64;;chr19:53935221..53935258,+!p1@ZNF761!0.26!15.98!ZNF761;;chr15:64752747..64752794,+!p1@ZNF609!0.26!14.01!ZNF609;;chr3:150126065..150126097,+!p1@TSC22D2!0.26!13.73!TSC22D2;;chr3:141868357..141868393,-!p3@TFDP2!0.26!10.09!TFDP2;;chr19:47617013..47617069,-!p2@ZC3H4!0.26!9.25!ZC3H4;;chr20:46130672..46130686,+!p2@NCOA3!0.26!6.73!NCOA3;;chr8:81398444..81398472,+!p1@ZBTB10!0.26!5.89!ZBTB10;;chr10:44070016..44070069,-!p1@ZNF239!0.26!4.20!ZNF239;;chr6:144289132..144289134,-!p3@PLAGL1!0.26!3.08!PLAGL1;;chr1:151043266..151043295,+!p2@GABPB2!0.26!2.80!GABPB2;;chr17:79885633..79885645,-!p4@MAFG!0.26!1.96!MAFG;;chr7:77428227..77428242,+!p3@PHTF2!0.26!1.68!PHTF2;;chr6:151712922..151712942,-!p6@ZBTB2!0.26!1.40!Z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| ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0010316 | |||
|fonse_cell_line=FF:0101532 | |fonse_cell_line=FF:0101532 | ||
|fonse_cell_line_closure=FF:0101532 | |fonse_cell_line_closure=FF:0101532 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10469-106I1 | |id=FF:10469-106I1 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0101532 | |is_a=EFO:0002091;;FF:0000210;;FF:0101532 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11255 | |||
|library_id_phase_based=2:CNhs11255 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10469 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10469 | |||
|name=rectal cancer cell line:TT1TKB | |name=rectal cancer cell line:TT1TKB | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11255,LSID757,release008,COMPLETED | |profile_hcage=CNhs11255,LSID757,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.255418380816618,0,0,-0.160318030086386,0,-0.079386748866786,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.136810886339635,0,0,0,0,0,0,0,0,0.601194100559036,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0.193276109134867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0536511514102425,0,0,0,0,0,-0.142917013326902,0,0,0,-0.00613512660935267,-0.211197402695869,0,0,0.0536511514102425,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139411979009774,0.107302302820485,0,0,-0.0309382406631704,-0.0620738941849875,0,0,0,0,0,0 | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 78: | ||
|rna_weight_ug=79.1115 | |rna_weight_ug=79.1115 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1185 | |sample_cell_catalog=RCB1185 | ||
|sample_cell_line=TT1TKB | |sample_cell_line=TT1TKB | ||
| Line 79: | Line 100: | ||
|top_motifs=HOX{A6,A7,B6,B7}:2.84173573174;ZEB1:2.11286707943;VSX1,2:2.10068548197;SNAI1..3:2.09699763821;FOXQ1:1.67244578191;PDX1:1.4242782586;HNF4A_NR2F1,2:1.36349017199;LEF1_TCF7_TCF7L1,2:1.33858267847;HNF1A:1.32421891781;FOXD3:1.32142982413;SP1:1.1940150962;bHLH_family:1.17452177804;FOXN1:1.17068450903;RORA:1.15765880961;ATF4:1.11210506202;ZNF148:1.10509179049;XCPE1{core}:0.899427951448;TEAD1:0.844657031166;NFY{A,B,C}:0.837407636142;TLX2:0.814904540538;ATF6:0.78853776275;RBPJ:0.781040300481;ONECUT1,2:0.741142978917;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.64478787862;TEF:0.637953306418;TFDP1:0.626828335868;MYOD1:0.60020284128;HLF:0.583886830623;POU2F1..3:0.567543294204;PAX8:0.557155555241;MYB:0.543924890402;SREBF1,2:0.542387920761;TBP:0.535005396099;MED-1{core}:0.510507935673;POU6F1:0.507830537486;FOX{F1,F2,J1}:0.505940901066;FOXM1:0.483177265363;PITX1..3:0.442525851013;E2F1..5:0.440336827913;TFAP2{A,C}:0.438547503373;LMO2:0.433993830932;ATF5_CREB3:0.427498757791;ELK1,4_GABP{A,B1}:0.404592292726;SOX17:0.386737908275;CRX:0.38371066397;CDX1,2,4:0.368804420226;HIF1A:0.365875147403;EN1,2:0.323642736655;GATA6:0.307722993304;MTF1:0.301686172891;FOX{D1,D2}:0.300867770242;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.293646852501;IRF7:0.290404625004;FOS_FOS{B,L1}_JUN{B,D}:0.288614569095;HOXA9_MEIS1:0.287555304899;NANOG:0.255797349901;AHR_ARNT_ARNT2:0.252730004214;NKX2-1,4:0.246710159278;TBX4,5:0.228469676999;RFX2..5_RFXANK_RFXAP:0.226591400718;POU5F1:0.216128084509;FOX{I1,J2}:0.21551125775;NKX6-1,2:0.210211622423;NFE2:0.188765848829;ZNF384:0.183249851148;ZNF143:0.145105222089;T:0.14003266951;SOX5:0.126547848167;CUX2:0.120792871282;PAX4:0.114151120895;PAX2:0.10042793388;NKX3-2:0.0952769791242;MAZ:0.0792429592608;EP300:0.0544687474882;SOX{8,9,10}:0.0503528919821;ARID5B:0.021859815038;OCT4_SOX2{dimer}:0.0213406944303;CEBPA,B_DDIT3:0.0156857801536;ZIC1..3:0.0140038005082;ELF1,2,4:0.00396588966964;ZFP161:0.00190662423152;JUN:-0.0210999545453;FOXP1:-0.0313563223807;NKX2-3_NKX2-5:-0.0317240416943;NFIX:-0.0328546980492;CDC5L:-0.0335321019683;FOSL2:-0.0368325730532;NR6A1:-0.0383533199682;HES1:-0.0595612059647;NR3C1:-0.0634304484808;ATF2:-0.0675570787233;RFX1:-0.0686535500391;DBP:-0.0768836641019;PRRX1,2:-0.0793367923399;TFAP2B:-0.0827619218672;SOX2:-0.0887649802256;ZBTB16:-0.0894443868286;PATZ1:-0.0913427843562;TP53:-0.106731870425;HMGA1,2:-0.113568573852;HSF1,2:-0.118533620962;BACH2:-0.128464803501;SRF:-0.130538058266;NFKB1_REL_RELA:-0.131077951036;PAX1,9:-0.13556426838;PBX1:-0.148165661755;PAX3,7:-0.157391933382;STAT5{A,B}:-0.160074415586;ADNP_IRX_SIX_ZHX:-0.168145187483;MEF2{A,B,C,D}:-0.179611225489;IRF1,2:-0.197677193669;NRF1:-0.199174429558;POU3F1..4:-0.201180259888;HBP1_HMGB_SSRP1_UBTF:-0.204962126079;AIRE:-0.206348138494;CREB1:-0.211853309181;STAT2,4,6:-0.229351873241;TFCP2:-0.261357126043;ESRRA:-0.280407588809;HAND1,2:-0.281177121891;FOXL1:-0.296770280736;PPARG:-0.307655661951;ALX4:-0.309572156559;GLI1..3:-0.33992438045;BREu{core}:-0.347568200756;RREB1:-0.348497754311;EVI1:-0.35879746129;IKZF1:-0.360532229364;ESR1:-0.372051780234;XBP1:-0.374931321446;DMAP1_NCOR{1,2}_SMARC:-0.378049326741;NR5A1,2:-0.38010604498;IKZF2:-0.392433979254;NHLH1,2:-0.397799696104;GCM1,2:-0.411049981522;GTF2A1,2:-0.41219139169;MYBL2:-0.417661717057;MAFB:-0.418392862201;NFE2L2:-0.427093914308;HOX{A5,B5}:-0.430643973256;GTF2I:-0.430659387651;MTE{core}:-0.448509362687;EGR1..3:-0.463261298106;FOXA2:-0.467319196819;SPIB:-0.46874656409;EBF1:-0.481466972642;SPI1:-0.518903546866;ETS1,2:-0.51975037973;GATA4:-0.538490841082;LHX3,4:-0.554392328805;TAL1_TCF{3,4,12}:-0.570798638061;POU1F1:-0.582636935565;MZF1:-0.588521214341;GFI1:-0.595404005525;KLF4:-0.610873532977;GFI1B:-0.624832667474;HOX{A4,D4}:-0.634365296326;BPTF:-0.643821157519;RUNX1..3:-0.697159077198;UFEwm:-0.702269619867;PRDM1:-0.767708391263;HIC1:-0.768611529852;YY1:-0.783591204052;FOXP3:-0.835538688895;MYFfamily:-0.854670103319;REST:-0.861190534366;ZNF423:-0.868610608787;GZF1:-0.887973395482;NFATC1..3:-0.914477482094;ZNF238:-0.935506450899;STAT1,3:-0.937765379875;TOPORS:-0.937895171579;TGIF1:-0.948400845039;TLX1..3_NFIC{dimer}:-0.951266375222;TFAP4:-0.952497672251;ZBTB6:-0.955191977713;PAX5:-1.01073863404;NFIL3:-1.0128160734;FOXO1,3,4:-1.11710468574;NFE2L1:-1.1274769873;AR:-1.14220284258;NR1H4:-1.20072368524;ALX1:-1.36807128906;PAX6:-1.41081805055;SPZ1:-1.5706723796;NKX2-2,8:-1.60561129465;SMAD1..7,9:-1.64579029455;RXRA_VDR{dimer}:-1.65528192485;RXR{A,B,G}:-1.77910535778;NANOG{mouse}:-1.85262296867;NKX3-1:-2.22124251362;HMX1:-2.25204661729 | |top_motifs=HOX{A6,A7,B6,B7}:2.84173573174;ZEB1:2.11286707943;VSX1,2:2.10068548197;SNAI1..3:2.09699763821;FOXQ1:1.67244578191;PDX1:1.4242782586;HNF4A_NR2F1,2:1.36349017199;LEF1_TCF7_TCF7L1,2:1.33858267847;HNF1A:1.32421891781;FOXD3:1.32142982413;SP1:1.1940150962;bHLH_family:1.17452177804;FOXN1:1.17068450903;RORA:1.15765880961;ATF4:1.11210506202;ZNF148:1.10509179049;XCPE1{core}:0.899427951448;TEAD1:0.844657031166;NFY{A,B,C}:0.837407636142;TLX2:0.814904540538;ATF6:0.78853776275;RBPJ:0.781040300481;ONECUT1,2:0.741142978917;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.64478787862;TEF:0.637953306418;TFDP1:0.626828335868;MYOD1:0.60020284128;HLF:0.583886830623;POU2F1..3:0.567543294204;PAX8:0.557155555241;MYB:0.543924890402;SREBF1,2:0.542387920761;TBP:0.535005396099;MED-1{core}:0.510507935673;POU6F1:0.507830537486;FOX{F1,F2,J1}:0.505940901066;FOXM1:0.483177265363;PITX1..3:0.442525851013;E2F1..5:0.440336827913;TFAP2{A,C}:0.438547503373;LMO2:0.433993830932;ATF5_CREB3:0.427498757791;ELK1,4_GABP{A,B1}:0.404592292726;SOX17:0.386737908275;CRX:0.38371066397;CDX1,2,4:0.368804420226;HIF1A:0.365875147403;EN1,2:0.323642736655;GATA6:0.307722993304;MTF1:0.301686172891;FOX{D1,D2}:0.300867770242;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.293646852501;IRF7:0.290404625004;FOS_FOS{B,L1}_JUN{B,D}:0.288614569095;HOXA9_MEIS1:0.287555304899;NANOG:0.255797349901;AHR_ARNT_ARNT2:0.252730004214;NKX2-1,4:0.246710159278;TBX4,5:0.228469676999;RFX2..5_RFXANK_RFXAP:0.226591400718;POU5F1:0.216128084509;FOX{I1,J2}:0.21551125775;NKX6-1,2:0.210211622423;NFE2:0.188765848829;ZNF384:0.183249851148;ZNF143:0.145105222089;T:0.14003266951;SOX5:0.126547848167;CUX2:0.120792871282;PAX4:0.114151120895;PAX2:0.10042793388;NKX3-2:0.0952769791242;MAZ:0.0792429592608;EP300:0.0544687474882;SOX{8,9,10}:0.0503528919821;ARID5B:0.021859815038;OCT4_SOX2{dimer}:0.0213406944303;CEBPA,B_DDIT3:0.0156857801536;ZIC1..3:0.0140038005082;ELF1,2,4:0.00396588966964;ZFP161:0.00190662423152;JUN:-0.0210999545453;FOXP1:-0.0313563223807;NKX2-3_NKX2-5:-0.0317240416943;NFIX:-0.0328546980492;CDC5L:-0.0335321019683;FOSL2:-0.0368325730532;NR6A1:-0.0383533199682;HES1:-0.0595612059647;NR3C1:-0.0634304484808;ATF2:-0.0675570787233;RFX1:-0.0686535500391;DBP:-0.0768836641019;PRRX1,2:-0.0793367923399;TFAP2B:-0.0827619218672;SOX2:-0.0887649802256;ZBTB16:-0.0894443868286;PATZ1:-0.0913427843562;TP53:-0.106731870425;HMGA1,2:-0.113568573852;HSF1,2:-0.118533620962;BACH2:-0.128464803501;SRF:-0.130538058266;NFKB1_REL_RELA:-0.131077951036;PAX1,9:-0.13556426838;PBX1:-0.148165661755;PAX3,7:-0.157391933382;STAT5{A,B}:-0.160074415586;ADNP_IRX_SIX_ZHX:-0.168145187483;MEF2{A,B,C,D}:-0.179611225489;IRF1,2:-0.197677193669;NRF1:-0.199174429558;POU3F1..4:-0.201180259888;HBP1_HMGB_SSRP1_UBTF:-0.204962126079;AIRE:-0.206348138494;CREB1:-0.211853309181;STAT2,4,6:-0.229351873241;TFCP2:-0.261357126043;ESRRA:-0.280407588809;HAND1,2:-0.281177121891;FOXL1:-0.296770280736;PPARG:-0.307655661951;ALX4:-0.309572156559;GLI1..3:-0.33992438045;BREu{core}:-0.347568200756;RREB1:-0.348497754311;EVI1:-0.35879746129;IKZF1:-0.360532229364;ESR1:-0.372051780234;XBP1:-0.374931321446;DMAP1_NCOR{1,2}_SMARC:-0.378049326741;NR5A1,2:-0.38010604498;IKZF2:-0.392433979254;NHLH1,2:-0.397799696104;GCM1,2:-0.411049981522;GTF2A1,2:-0.41219139169;MYBL2:-0.417661717057;MAFB:-0.418392862201;NFE2L2:-0.427093914308;HOX{A5,B5}:-0.430643973256;GTF2I:-0.430659387651;MTE{core}:-0.448509362687;EGR1..3:-0.463261298106;FOXA2:-0.467319196819;SPIB:-0.46874656409;EBF1:-0.481466972642;SPI1:-0.518903546866;ETS1,2:-0.51975037973;GATA4:-0.538490841082;LHX3,4:-0.554392328805;TAL1_TCF{3,4,12}:-0.570798638061;POU1F1:-0.582636935565;MZF1:-0.588521214341;GFI1:-0.595404005525;KLF4:-0.610873532977;GFI1B:-0.624832667474;HOX{A4,D4}:-0.634365296326;BPTF:-0.643821157519;RUNX1..3:-0.697159077198;UFEwm:-0.702269619867;PRDM1:-0.767708391263;HIC1:-0.768611529852;YY1:-0.783591204052;FOXP3:-0.835538688895;MYFfamily:-0.854670103319;REST:-0.861190534366;ZNF423:-0.868610608787;GZF1:-0.887973395482;NFATC1..3:-0.914477482094;ZNF238:-0.935506450899;STAT1,3:-0.937765379875;TOPORS:-0.937895171579;TGIF1:-0.948400845039;TLX1..3_NFIC{dimer}:-0.951266375222;TFAP4:-0.952497672251;ZBTB6:-0.955191977713;PAX5:-1.01073863404;NFIL3:-1.0128160734;FOXO1,3,4:-1.11710468574;NFE2L1:-1.1274769873;AR:-1.14220284258;NR1H4:-1.20072368524;ALX1:-1.36807128906;PAX6:-1.41081805055;SPZ1:-1.5706723796;NKX2-2,8:-1.60561129465;SMAD1..7,9:-1.64579029455;RXRA_VDR{dimer}:-1.65528192485;RXR{A,B,G}:-1.77910535778;NANOG{mouse}:-1.85262296867;NKX3-1:-2.22124251362;HMX1:-2.25204661729 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10469-106I1;search_select_hide=table117:FF:10469-106I1 | |||
}} | }} | ||
Latest revision as of 14:25, 3 June 2020
| Name: | rectal cancer cell line:TT1TKB |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11255 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11255
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11255
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.525 |
| 10 | 10 | 0.547 |
| 100 | 100 | 0.492 |
| 101 | 101 | 0.304 |
| 102 | 102 | 0.542 |
| 103 | 103 | 0.218 |
| 104 | 104 | 0.79 |
| 105 | 105 | 0.238 |
| 106 | 106 | 0.643 |
| 107 | 107 | 0.631 |
| 108 | 108 | 0.522 |
| 109 | 109 | 0.352 |
| 11 | 11 | 0.304 |
| 110 | 110 | 0.883 |
| 111 | 111 | 0.0219 |
| 112 | 112 | 0.0666 |
| 113 | 113 | 0.552 |
| 114 | 114 | 0.233 |
| 115 | 115 | 0.0207 |
| 116 | 116 | 0.111 |
| 117 | 117 | 0.208 |
| 118 | 118 | 0.813 |
| 119 | 119 | 0.171 |
| 12 | 12 | 0.63 |
| 120 | 120 | 0.272 |
| 121 | 121 | 0.761 |
| 122 | 122 | 0.259 |
| 123 | 123 | 0.0229 |
| 124 | 124 | 0.711 |
| 125 | 125 | 0.0092 |
| 126 | 126 | 0.243 |
| 127 | 127 | 0.784 |
| 128 | 128 | 0.0485 |
| 129 | 129 | 0.785 |
| 13 | 13 | 0.0385 |
| 130 | 130 | 0.198 |
| 131 | 131 | 0.0463 |
| 132 | 132 | 0.593 |
| 133 | 133 | 0.0539 |
| 134 | 134 | 0.0492 |
| 135 | 135 | 0.0229 |
| 136 | 136 | 0.0648 |
| 137 | 137 | 0.196 |
| 138 | 138 | 0.0722 |
| 139 | 139 | 0.0252 |
| 14 | 14 | 0.45 |
| 140 | 140 | 0.957 |
| 141 | 141 | 0.688 |
| 142 | 142 | 0.965 |
| 143 | 143 | 0.219 |
| 144 | 144 | 0.349 |
| 145 | 145 | 0.599 |
| 146 | 146 | 0.352 |
| 147 | 147 | 0.991 |
| 148 | 148 | 0.917 |
| 149 | 149 | 0.79 |
| 15 | 15 | 0.739 |
| 150 | 150 | 0.707 |
| 151 | 151 | 0.334 |
| 152 | 152 | 0.0357 |
| 153 | 153 | 0.475 |
| 154 | 154 | 0.1 |
| 155 | 155 | 0.981 |
| 156 | 156 | 0.213 |
| 157 | 157 | 0.827 |
| 158 | 158 | 0.174 |
| 159 | 159 | 0.635 |
| 16 | 16 | 0.457 |
| 160 | 160 | 0.681 |
| 161 | 161 | 0.756 |
| 162 | 162 | 0.791 |
| 163 | 163 | 0.698 |
| 164 | 164 | 0.377 |
| 165 | 165 | 0.586 |
| 166 | 166 | 0.823 |
| 167 | 167 | 0.402 |
| 168 | 168 | 0.674 |
| 169 | 169 | 0.763 |
| 17 | 17 | 0.461 |
| 18 | 18 | 0.221 |
| 19 | 19 | 0.143 |
| 2 | 2 | 0.333 |
| 20 | 20 | 0.226 |
| 21 | 21 | 0.728 |
| 22 | 22 | 0.826 |
| 23 | 23 | 0.796 |
| 24 | 24 | 0.891 |
| 25 | 25 | 0.598 |
| 26 | 26 | 0.736 |
| 27 | 27 | 0.297 |
| 28 | 28 | 0.63 |
| 29 | 29 | 0.786 |
| 3 | 3 | 0.153 |
| 30 | 30 | 0.219 |
| 31 | 31 | 0.434 |
| 32 | 32 | 0.003 |
| 33 | 33 | 0.576 |
| 34 | 34 | 0.611 |
| 35 | 35 | 0.112 |
| 36 | 36 | 0.557 |
| 37 | 37 | 0.403 |
| 38 | 38 | 0.95 |
| 39 | 39 | 0.605 |
| 4 | 4 | 0.154 |
| 40 | 40 | 0.519 |
| 41 | 41 | 0.269 |
| 42 | 42 | 0.698 |
| 43 | 43 | 0.488 |
| 44 | 44 | 0.645 |
| 45 | 45 | 0.257 |
| 46 | 46 | 0.257 |
| 47 | 47 | 0.961 |
| 48 | 48 | 0.846 |
| 49 | 49 | 0.464 |
| 5 | 5 | 0.336 |
| 50 | 50 | 0.269 |
| 51 | 51 | 0.654 |
| 52 | 52 | 0.772 |
| 53 | 53 | 0.705 |
| 54 | 54 | 0.857 |
| 55 | 55 | 0.486 |
| 56 | 56 | 0.88 |
| 57 | 57 | 0.575 |
| 58 | 58 | 0.969 |
| 59 | 59 | 0.262 |
| 6 | 6 | 0.294 |
| 60 | 60 | 0.804 |
| 61 | 61 | 0.555 |
| 62 | 62 | 0.272 |
| 63 | 63 | 0.521 |
| 64 | 64 | 0.515 |
| 65 | 65 | 0.362 |
| 66 | 66 | 6.03755e-4 |
| 67 | 67 | 0.333 |
| 68 | 68 | 0.0012 |
| 69 | 69 | 0.513 |
| 7 | 7 | 0.505 |
| 70 | 70 | 0.128 |
| 71 | 71 | 0.0371 |
| 72 | 72 | 0.967 |
| 73 | 73 | 0.239 |
| 74 | 74 | 0.0867 |
| 75 | 75 | 0.345 |
| 76 | 76 | 0.858 |
| 77 | 77 | 0.209 |
| 78 | 78 | 0.0609 |
| 79 | 79 | 0.0927 |
| 8 | 8 | 0.185 |
| 80 | 80 | 0.792 |
| 81 | 81 | 0.0164 |
| 82 | 82 | 0.00181 |
| 83 | 83 | 0.0319 |
| 84 | 84 | 0.582 |
| 85 | 85 | 0.176 |
| 86 | 86 | 0.329 |
| 87 | 87 | 0.552 |
| 88 | 88 | 0.817 |
| 89 | 89 | 0.124 |
| 9 | 9 | 0.214 |
| 90 | 90 | 0.38 |
| 91 | 91 | 0.0676 |
| 92 | 92 | 0.2 |
| 93 | 93 | 0.317 |
| 94 | 94 | 0.161 |
| 95 | 95 | 0.925 |
| 96 | 96 | 0.724 |
| 97 | 97 | 0.419 |
| 98 | 98 | 0.289 |
| 99 | 99 | 0.766 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11255
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101532 rectal cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3119 (gastrointestinal system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001052 (rectum)
0000160 (intestine)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
0004907 (lower digestive tract)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101532 (rectal cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)
