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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004771
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004771
|HumanCAGEScanFiles=NCig10067;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep1.NCig10067.10474-106I6.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep1.NCig10067.10474-106I6.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep1.NCig10067.10474-106I6.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep1.NCig10067.10474-106I6.hg19.GCTATA.pairs.bed.gz!NCig10131;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep2.NCig10131.10474-106I6.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep2.NCig10131.10474-106I6.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep2.NCig10131.10474-106I6.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep2.NCig10131.10474-106I6.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX007957;DRR008829;DRZ000254;DRZ001639;DRZ011604;DRZ012989
|accession_numbers_RNASeq=RNA-Seq;DRX057125;DRR062884;DRZ007960
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0002092
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0002092
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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r7:102985160..102985273,-!p1@DNAJC2!0.17!33.24!DNAJC2;;chr19:19516561..19516644,+!p1@GATAD2A!0.17!27.90!GATAD2A;;chr15:85291785..85291848,+!p1@ZNF592!0.17!23.59!ZNF592;;chr2:174828545..174828644,-!p1@SP3!0.17!19.80!SP3;;chr17:61920023..61920110,-!p1@SMARCD2!0.17!18.25!SMARCD2;;chr4:124374..124410,+!p2@ZNF718!0.17!13.26!ZNF718;;chr4:87856191..87856208,+!p2@AFF1!0.17!9.99!AFF1;;chr5:172483347..172483407,+!p1@C5orf41!0.17!9.30!CREBRF;;chr19:57999101..57999158,+!p1@ZNF419!0.17!8.44!ZNF419;;chr17:80477643..80477678,+!p2@FOXK2!0.17!7.58!FOXK2;;chr19:21106049..21106072,+!p1@ZNF85!0.17!6.72!ZNF85;;chr6:41703296..41703367,-!p1@TFEB!0.17!6.03!TFEB;;chr10:31320777..31320834,-!p1@ZNF438!0.17!6.03!ZNF438;;chr2:174830084..174830108,-!p4@SP3!0.17!4.48!SP3;;chr19:21106081..21106115,+!p2@ZNF85!0.17!3.10!ZNF85;;chr1:8483756..8483809,-!p5@RERE!0.17!2.93!RERE;;chr1:8763463..8763499,-!p6@RERE!0.17!2.93!RERE;;chr6:45389791..45389832,+!p3@RUNX2!0.17!2.58!RUNX2;;chr10:35415761..35415800,+!p7@CREM!0.17!2.58!CREM;;chr4:56412978..56413003,-!p1@CLOCK!0.17!2.41!CLOCK;;chr7:21467642..21467671,+!p2@SP4!0.17!2.24!SP4;;chr5:180287681..180287694,-!p2@ZFP62!0.17!2.07!ZFP62;;chr1:45805693..45805718,+!p3@TOE1!0.17!2.07!TOE1;;chr2:174830043..174830071,-!p6@SP3!0.17!2.07!SP3;;chr19:12512062..12512094,-!p1@ZNF799!0.17!1.89!ZNF799;;chr17:79885537..79885554,-!p2@MAFG!0.17!1.72!MAFG;;chr1:151253991..151254031,+!p2@ZNF687!0.17!1.72!ZNF687;;chr1:26496459..26496470,+!p2@ZNF593!0.17!1.72!ZNF593;;chr2:185463247..185463263,+!p1@ZNF804A!0.17!1.55!ZNF804A;;chr5:172484377..172484418,+!p2@C5orf41!0.17!1.38!CREBRF;;chr7:99613195..99613206,+!p4@ZKSCAN1!0.17!1.38!ZKSCAN1;;chr16:30569604..30569629,-!p3@ZNF764!0.17!1.21!ZNF764;;chr4:87967965..87967983,+!p16@AFF1!0.17!1.03!AFF1;;chr1:40997363..40997392,+!p2@ZNF684!0.17!0.86!ZNF684;;chr7:127032330..127032356,-!p3@ZNF800!0.17!0.86!ZNF800;;chr4:149363544..149363583,-!p3@NR3C2!0.17!0.69!NR3C2;;chr3:101568349..101568365,+!p1@NFKBIZ!0.16!68.89!NFKBIZ;;chr1:226595741..226595818,-!p1@PARP1!0.16!67.16!PARP1;;chr11:65430402..65430431,-!p2@RELA!0.16!33.93!RELA;;chr12:69753448..69753577,+!p1@YEATS4!0.16!25.14!YEATS4;;chr19:19932513..19932569,-!p1@ZNF506!0.16!23.94!ZNF506;;chr19:23578226..23578285,-!p1@ZNF91!0.16!21.70!ZNF91;;chr4:95128748..95128794,+!p1@SMARCAD1!0.16!15.84!SMARCAD1;;chr12:95467267..95467350,-!p1@NR2C1!0.16!14.81!NR2C1;;chr12:498415..498492,-!p1@KDM5A!0.16!13.78!KDM5A;;chr19:53935221..53935258,+!p1@ZNF761!0.16!12.40!ZNF761;;chr6:41514305..41514359,+!p2@FOXP4!0.16!10.16!FOXP4;;chr17:38256822..38256851,-!p1@NR1D1!0.16!9.64!NR1D1;;chr19:9546177..9546224,-!p1@ZNF266!0.16!8.61!ZNF266;;chr11:65687158..65687216,+!p4@DRAP1!0.16!6.72!DRAP1;;chrX:129402866..129402880,-!p1@ZNF280C!0.16!6.72!ZNF280C;;chr6:43139041..43139094,+!p3@SRF!0.16!6.54!SRF;;chr15:77713025..77713081,+!p2@HMG20A!0.16!4.99!HMG20A;;chr19:53466095..53466149,-!p1@ZNF321P,p1@ZNF816-ZNF321P,p1@ZNF816!0.16!4.65!ZNF816;;chr10:43133950..43133994,-!p2@ZNF33B!0.16!3.96!ZNF33B;;chr19:37709076..37709154,+!p1@ZNF383!0.16!3.62!ZNF383;;chr9:115818951..115819011,-!p1@ZFP37!0.16!3.27!ZFP37;;chr19:36705617..36705644,+!p4@ZNF146!0.16!2.93!ZNF146;;chr19:12035878..12035902,+!p2@ZNF700,p2@ZNF763!0.16!2.24!ZNF700;;chr2:145275109..145275128,-!p6@ZEB2!0.16!2.07!ZEB2;;chr2:11606283..11606289,-!p1@E2F6!0.16!1.89!E2F6;;chr5:88179230..88179270,-!p4@MEF2C!0.16!1.72!MEF2C;;chr8:116681150..116681164,-!p5@TRPS1!0.16!1.72!TRPS1;;chr9:2016724..2016752,+!p7@SMARCA2!0.16!1.72!SMARCA2;;chr6:15249128..15249177,+!p4@JARID2!0.16!1.55!JARID2;;chr19:56904947..56904975,-!p2@ZNF582!0.16!1.38!ZNF582;;chr3:107318157..107318172,+!p6@BBX!0.16!1.03!BBX;;chr8:57123873..57123894,-!p2@PLAG1!0.16!1.03!PLAG1;;chr15:37392703..37392717,-!p8@MEIS2!0.16!1.03!MEIS2;;
Line 38: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myeloma%2520cell%2520line%253aPCM6.CNhs11258.10474-106I6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myeloma%2520cell%2520line%253aPCM6.CNhs11258.10474-106I6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myeloma%2520cell%2520line%253aPCM6.CNhs11258.10474-106I6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myeloma%2520cell%2520line%253aPCM6.CNhs11258.10474-106I6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myeloma%2520cell%2520line%253aPCM6.CNhs11258.10474-106I6.hg38.nobarcode.ctss.bed.gz
|id=FF:10474-106I6
|id=FF:10474-106I6
|is_a=EFO:0002091;;FF:0000210;;FF:0100899
|is_a=EFO:0002091;;FF:0000210;;FF:0100899
|is_obsolete=
|is_obsolete=
|library_id=CNhs11258
|library_id_phase_based=2:CNhs11258
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10474
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10474
|name=myeloma cell line:PCM6
|name=myeloma cell line:PCM6
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 63:
|profile_cagescan=NCig10067,,,
|profile_cagescan=NCig10067,,,
|profile_hcage=CNhs11258,LSID757,release008,COMPLETED
|profile_hcage=CNhs11258,LSID757,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_cell_line=PCM6
Line 84: Line 104:
|top_motifs=DMAP1_NCOR{1,2}_SMARC:2.42861289972;POU5F1:2.10576003138;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.7918759524;HAND1,2:1.78734776743;FOXQ1:1.74535919858;ELK1,4_GABP{A,B1}:1.74221910244;IRF7:1.66497776521;IRF1,2:1.62180647369;TEF:1.50415149509;ELF1,2,4:1.46505133679;PAX6:1.38428191089;HOX{A4,D4}:1.35520233574;YY1:1.31799611919;VSX1,2:1.30579006122;NKX6-1,2:1.27779213551;MYOD1:1.23460129199;MYB:1.17776288491;HOXA9_MEIS1:1.14933377941;OCT4_SOX2{dimer}:1.11576199409;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.07687043164;POU2F1..3:1.00013313755;NKX2-2,8:0.977371225321;AIRE:0.951227911707;FOXM1:0.943506000321;ALX1:0.934650658695;CUX2:0.886448087061;LMO2:0.884132431535;FOXA2:0.88377645864;CEBPA,B_DDIT3:0.809553578381;TLX2:0.756429431536;EVI1:0.719279321252;ZBTB16:0.718303908009;SPI1:0.688176709607;FOXP3:0.664747798121;NFY{A,B,C}:0.654614059592;NR5A1,2:0.582022890791;IKZF2:0.567123747851;DBP:0.539626736693;ZNF384:0.537350110641;ZEB1:0.503145128638;FOX{F1,F2,J1}:0.485553455389;ADNP_IRX_SIX_ZHX:0.480387583542;RUNX1..3:0.469176157059;ZNF143:0.454912010905;POU1F1:0.449574948531;FOXP1:0.443459629015;PAX3,7:0.428730795804;PAX1,9:0.410887447657;TGIF1:0.406121697532;NFKB1_REL_RELA:0.394846986911;POU3F1..4:0.381813458063;STAT5{A,B}:0.376840908539;CDC5L:0.358552305925;SREBF1,2:0.346429900971;bHLH_family:0.341437671895;ATF4:0.31312259938;AHR_ARNT_ARNT2:0.297970578792;NRF1:0.289628728909;MAFB:0.274316720412;ATF5_CREB3:0.264993673671;NFIL3:0.258897693717;BPTF:0.231359366514;PBX1:0.212327974242;CDX1,2,4:0.210028434865;SPIB:0.195829407308;PAX2:0.167034032221;FOX{I1,J2}:0.141983351577;NKX2-1,4:0.131982748534;SNAI1..3:0.123290344288;ZNF423:0.0977692355418;GATA6:0.0958434020521;PAX8:0.0780344050786;GFI1:0.0736746043901;PRRX1,2:0.0681353794794;NFE2:0.0333188852512;RXRA_VDR{dimer}:0.0271038387809;HOX{A6,A7,B6,B7}:0.0232340420534;MYBL2:0.0231244871517;FOXN1:0.0118475661259;ETS1,2:-0.000371967050046;PAX4:-0.00708041916617;E2F1..5:-0.0175239234918;RFX2..5_RFXANK_RFXAP:-0.017894951188;ZNF238:-0.022199702802;SOX{8,9,10}:-0.0266722935549;STAT2,4,6:-0.0267068835746;RORA:-0.0283227470179;SOX17:-0.0299723387628;CRX:-0.0337149165748;AR:-0.0519499074051;HNF4A_NR2F1,2:-0.0525562979202;CREB1:-0.0621678947993;PPARG:-0.103948838091;NFE2L2:-0.125863433997;SOX5:-0.148841019141;BREu{core}:-0.149917238912;ONECUT1,2:-0.152445761833;HIF1A:-0.165774786584;MYFfamily:-0.180939290312;NKX3-2:-0.180943393971;GFI1B:-0.189659526604;HLF:-0.211720543876;HNF1A:-0.214685252745;FOSL2:-0.225280221825;FOXO1,3,4:-0.225728077151;TFAP4:-0.264196960337;ATF2:-0.267381982235;HES1:-0.275478833948;RBPJ:-0.301149076896;LHX3,4:-0.312995040814;STAT1,3:-0.347400640393;NHLH1,2:-0.348253404879;MEF2{A,B,C,D}:-0.35567867563;NR6A1:-0.370473460614;FOS_FOS{B,L1}_JUN{B,D}:-0.382419041545;HMX1:-0.384260871033;ATF6:-0.388284181336;TAL1_TCF{3,4,12}:-0.401190010679;HOX{A5,B5}:-0.412113479909;PITX1..3:-0.448603811269;ARID5B:-0.456307605224;SMAD1..7,9:-0.458995402259;NANOG{mouse}:-0.460623156546;NFE2L1:-0.470724312193;BACH2:-0.475542569554;REST:-0.496756902774;GCM1,2:-0.499543157612;ESRRA:-0.504142595839;TFCP2:-0.508856610572;UFEwm:-0.508891512961;POU6F1:-0.513144760946;LEF1_TCF7_TCF7L1,2:-0.598488137881;HMGA1,2:-0.607256038661;FOXD3:-0.614077847089;SOX2:-0.636772486207;ZNF148:-0.655339044552;GTF2A1,2:-0.665131963712;IKZF1:-0.681826957629;HBP1_HMGB_SSRP1_UBTF:-0.720165162792;TOPORS:-0.722177893831;PDX1:-0.747962415663;MTF1:-0.758909008258;FOX{D1,D2}:-0.773783176251;NR1H4:-0.781868073306;ESR1:-0.786386389909;ALX4:-0.816852188119;EBF1:-0.835843870278;RREB1:-0.839780652259;TLX1..3_NFIC{dimer}:-0.842617802505;SRF:-0.845825769627;NKX2-3_NKX2-5:-0.851265268594;RXR{A,B,G}:-0.87150833936;ZFP161:-0.879517435192;NKX3-1:-0.891457664854;GATA4:-0.90001621063;ZIC1..3:-0.922384415377;RFX1:-0.922669933048;EP300:-0.949113658556;EN1,2:-0.95098389314;TFDP1:-0.953762859351;PRDM1:-0.976359031693;SPZ1:-0.976690406509;XBP1:-0.979972911247;TP53:-0.981623688586;FOXL1:-1.04894830015;JUN:-1.05036014849;MAZ:-1.05438094424;TFAP2{A,C}:-1.056632685;KLF4:-1.05667535824;T:-1.06161386758;ZBTB6:-1.1566145532;MZF1:-1.15965716112;NFATC1..3:-1.1849972039;HIC1:-1.19703097348;NANOG:-1.25627658786;TEAD1:-1.26957059833;XCPE1{core}:-1.29081781147;GTF2I:-1.30238253303;PAX5:-1.30749421266;GLI1..3:-1.31733138318;MTE{core}:-1.34567237873;NFIX:-1.35293104593;NR3C1:-1.37484625132;PATZ1:-1.38674876193;HSF1,2:-1.40588175731;GZF1:-1.49687440796;MED-1{core}:-1.52568967434;SP1:-1.58505601305;EGR1..3:-1.59081254011;TFAP2B:-1.60095994484;TBX4,5:-1.76273208283;TBP:-1.88216772102
|top_motifs=DMAP1_NCOR{1,2}_SMARC:2.42861289972;POU5F1:2.10576003138;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.7918759524;HAND1,2:1.78734776743;FOXQ1:1.74535919858;ELK1,4_GABP{A,B1}:1.74221910244;IRF7:1.66497776521;IRF1,2:1.62180647369;TEF:1.50415149509;ELF1,2,4:1.46505133679;PAX6:1.38428191089;HOX{A4,D4}:1.35520233574;YY1:1.31799611919;VSX1,2:1.30579006122;NKX6-1,2:1.27779213551;MYOD1:1.23460129199;MYB:1.17776288491;HOXA9_MEIS1:1.14933377941;OCT4_SOX2{dimer}:1.11576199409;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.07687043164;POU2F1..3:1.00013313755;NKX2-2,8:0.977371225321;AIRE:0.951227911707;FOXM1:0.943506000321;ALX1:0.934650658695;CUX2:0.886448087061;LMO2:0.884132431535;FOXA2:0.88377645864;CEBPA,B_DDIT3:0.809553578381;TLX2:0.756429431536;EVI1:0.719279321252;ZBTB16:0.718303908009;SPI1:0.688176709607;FOXP3:0.664747798121;NFY{A,B,C}:0.654614059592;NR5A1,2:0.582022890791;IKZF2:0.567123747851;DBP:0.539626736693;ZNF384:0.537350110641;ZEB1:0.503145128638;FOX{F1,F2,J1}:0.485553455389;ADNP_IRX_SIX_ZHX:0.480387583542;RUNX1..3:0.469176157059;ZNF143:0.454912010905;POU1F1:0.449574948531;FOXP1:0.443459629015;PAX3,7:0.428730795804;PAX1,9:0.410887447657;TGIF1:0.406121697532;NFKB1_REL_RELA:0.394846986911;POU3F1..4:0.381813458063;STAT5{A,B}:0.376840908539;CDC5L:0.358552305925;SREBF1,2:0.346429900971;bHLH_family:0.341437671895;ATF4:0.31312259938;AHR_ARNT_ARNT2:0.297970578792;NRF1:0.289628728909;MAFB:0.274316720412;ATF5_CREB3:0.264993673671;NFIL3:0.258897693717;BPTF:0.231359366514;PBX1:0.212327974242;CDX1,2,4:0.210028434865;SPIB:0.195829407308;PAX2:0.167034032221;FOX{I1,J2}:0.141983351577;NKX2-1,4:0.131982748534;SNAI1..3:0.123290344288;ZNF423:0.0977692355418;GATA6:0.0958434020521;PAX8:0.0780344050786;GFI1:0.0736746043901;PRRX1,2:0.0681353794794;NFE2:0.0333188852512;RXRA_VDR{dimer}:0.0271038387809;HOX{A6,A7,B6,B7}:0.0232340420534;MYBL2:0.0231244871517;FOXN1:0.0118475661259;ETS1,2:-0.000371967050046;PAX4:-0.00708041916617;E2F1..5:-0.0175239234918;RFX2..5_RFXANK_RFXAP:-0.017894951188;ZNF238:-0.022199702802;SOX{8,9,10}:-0.0266722935549;STAT2,4,6:-0.0267068835746;RORA:-0.0283227470179;SOX17:-0.0299723387628;CRX:-0.0337149165748;AR:-0.0519499074051;HNF4A_NR2F1,2:-0.0525562979202;CREB1:-0.0621678947993;PPARG:-0.103948838091;NFE2L2:-0.125863433997;SOX5:-0.148841019141;BREu{core}:-0.149917238912;ONECUT1,2:-0.152445761833;HIF1A:-0.165774786584;MYFfamily:-0.180939290312;NKX3-2:-0.180943393971;GFI1B:-0.189659526604;HLF:-0.211720543876;HNF1A:-0.214685252745;FOSL2:-0.225280221825;FOXO1,3,4:-0.225728077151;TFAP4:-0.264196960337;ATF2:-0.267381982235;HES1:-0.275478833948;RBPJ:-0.301149076896;LHX3,4:-0.312995040814;STAT1,3:-0.347400640393;NHLH1,2:-0.348253404879;MEF2{A,B,C,D}:-0.35567867563;NR6A1:-0.370473460614;FOS_FOS{B,L1}_JUN{B,D}:-0.382419041545;HMX1:-0.384260871033;ATF6:-0.388284181336;TAL1_TCF{3,4,12}:-0.401190010679;HOX{A5,B5}:-0.412113479909;PITX1..3:-0.448603811269;ARID5B:-0.456307605224;SMAD1..7,9:-0.458995402259;NANOG{mouse}:-0.460623156546;NFE2L1:-0.470724312193;BACH2:-0.475542569554;REST:-0.496756902774;GCM1,2:-0.499543157612;ESRRA:-0.504142595839;TFCP2:-0.508856610572;UFEwm:-0.508891512961;POU6F1:-0.513144760946;LEF1_TCF7_TCF7L1,2:-0.598488137881;HMGA1,2:-0.607256038661;FOXD3:-0.614077847089;SOX2:-0.636772486207;ZNF148:-0.655339044552;GTF2A1,2:-0.665131963712;IKZF1:-0.681826957629;HBP1_HMGB_SSRP1_UBTF:-0.720165162792;TOPORS:-0.722177893831;PDX1:-0.747962415663;MTF1:-0.758909008258;FOX{D1,D2}:-0.773783176251;NR1H4:-0.781868073306;ESR1:-0.786386389909;ALX4:-0.816852188119;EBF1:-0.835843870278;RREB1:-0.839780652259;TLX1..3_NFIC{dimer}:-0.842617802505;SRF:-0.845825769627;NKX2-3_NKX2-5:-0.851265268594;RXR{A,B,G}:-0.87150833936;ZFP161:-0.879517435192;NKX3-1:-0.891457664854;GATA4:-0.90001621063;ZIC1..3:-0.922384415377;RFX1:-0.922669933048;EP300:-0.949113658556;EN1,2:-0.95098389314;TFDP1:-0.953762859351;PRDM1:-0.976359031693;SPZ1:-0.976690406509;XBP1:-0.979972911247;TP53:-0.981623688586;FOXL1:-1.04894830015;JUN:-1.05036014849;MAZ:-1.05438094424;TFAP2{A,C}:-1.056632685;KLF4:-1.05667535824;T:-1.06161386758;ZBTB6:-1.1566145532;MZF1:-1.15965716112;NFATC1..3:-1.1849972039;HIC1:-1.19703097348;NANOG:-1.25627658786;TEAD1:-1.26957059833;XCPE1{core}:-1.29081781147;GTF2I:-1.30238253303;PAX5:-1.30749421266;GLI1..3:-1.31733138318;MTE{core}:-1.34567237873;NFIX:-1.35293104593;NR3C1:-1.37484625132;PATZ1:-1.38674876193;HSF1,2:-1.40588175731;GZF1:-1.49687440796;MED-1{core}:-1.52568967434;SP1:-1.58505601305;EGR1..3:-1.59081254011;TFAP2B:-1.60095994484;TBX4,5:-1.76273208283;TBP:-1.88216772102
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10474-106I6;search_select_hide=table117:FF:10474-106I6
}}
}}

Latest revision as of 14:25, 3 June 2020

Name:myeloma cell line:PCM6
Species:Human (Homo sapiens)
Library ID:CNhs11258
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexfemale
age60
cell typeb cell
cell linePCM6
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004771
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11258 CAGE DRX007957 DRR008829
Accession ID Hg19

Library idBAMCTSS
CNhs11258 DRZ000254 DRZ001639
Accession ID Hg38

Library idBAMCTSS
CNhs11258 DRZ011604 DRZ012989
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10067downloaddownloaddownloaddownload
NCig10131downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00004771
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10068 RNA-Seq DRX057125 DRR062884
Accession ID Hg19

Library idBAMCTSS
RDhi10068 DRZ007960


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0772
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0601
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea1.074
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.069
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.00654
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.183
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.069
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0719
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.124
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0407
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.127
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.069
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0221
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.00645
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.109
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.27
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11258

Jaspar motifP-value
MA0002.20.00986
MA0003.10.559
MA0004.10.103
MA0006.10.407
MA0007.10.936
MA0009.10.747
MA0014.10.818
MA0017.10.116
MA0018.20.118
MA0019.10.06
MA0024.10.606
MA0025.10.591
MA0027.10.673
MA0028.13.8864e-7
MA0029.10.116
MA0030.10.0933
MA0031.10.173
MA0035.20.896
MA0038.10.0279
MA0039.20.836
MA0040.10.482
MA0041.10.279
MA0042.10.809
MA0043.10.547
MA0046.10.659
MA0047.20.916
MA0048.10.593
MA0050.12.93597e-23
MA0051.11.21924e-14
MA0052.10.148
MA0055.10.517
MA0057.10.958
MA0058.10.049
MA0059.10.0032
MA0060.10.0395
MA0061.10.0189
MA0062.28.08783e-12
MA0065.20.0137
MA0066.10.507
MA0067.10.978
MA0068.10.131
MA0069.10.986
MA0070.10.9
MA0071.10.701
MA0072.10.843
MA0073.10.719
MA0074.10.778
MA0076.15.37819e-11
MA0077.10.0329
MA0078.10.25
MA0079.20.372
MA0080.21.13978e-5
MA0081.10.0026
MA0083.10.0809
MA0084.10.571
MA0087.10.0606
MA0088.10.0162
MA0090.19.28571e-5
MA0091.10.576
MA0092.10.965
MA0093.10.109
MA0099.20.217
MA0100.10.208
MA0101.10.231
MA0102.20.334
MA0103.10.02
MA0104.20.00548
MA0105.11.18891e-5
MA0106.10.761
MA0107.10.104
MA0108.22.1794e-19
MA0111.10.468
MA0112.20.0455
MA0113.10.471
MA0114.10.0109
MA0115.10.123
MA0116.14.42599e-5
MA0117.10.596
MA0119.10.422
MA0122.10.497
MA0124.10.129
MA0125.10.534
MA0131.10.0919
MA0135.11.49875e-4
MA0136.15.2634e-8
MA0137.20.381
MA0138.20.835
MA0139.10.0787
MA0140.10.475
MA0141.10.234
MA0142.10.115
MA0143.10.772
MA0144.10.949
MA0145.10.645
MA0146.10.0319
MA0147.10.00919
MA0148.10.261
MA0149.10.162
MA0150.10.106
MA0152.10.174
MA0153.10.0886
MA0154.10.032
MA0155.10.54
MA0156.14.29527e-10
MA0157.10.941
MA0159.10.00602
MA0160.10.181
MA0162.10.461
MA0163.11.52959e-11
MA0164.10.903
MA0258.10.152
MA0259.10.129



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11258

Novel motifP-value
10.00985
100.00996
1000.504
1010.207
1020.538
1030.0551
1040.558
1050.986
1060.476
1070.294
1080.526
1090.045
110.108
1100.196
1110.0305
1120.121
1130.864
1140.268
1150.242
1160.763
1170.00123
1180.377
1190.105
120.863
1200.254
1210.719
1220.722
1230.00548
1240.426
1250.592
1260.189
1270.968
1280.298
1290.316
130.0983
1300.838
1310.238
1320.293
1330.211
1340.779
1350.0931
1360.235
1370.443
1380.238
1390.574
140.599
1400.128
1410.208
1420.656
1430.506
1440.985
1450.588
1460.986
1470.212
1480.0194
1490.922
150.338
1500.353
1510.916
1520.926
1530.798
1540.865
1550.0521
1560.148
1570.393
1580.321
1590.594
160.419
1600.542
1610.0457
1620.29
1630.362
1640.115
1650.347
1660.612
1670.205
1680.709
1690.0575
170.565
180.0221
190.888
20.463
200.346
210.588
220.75
230.629
240.383
250.0899
260.085
270.444
280.624
290.101
30.154
300.0772
310.79
320.775
330.269
340.36
350.436
360.0323
370.0632
380.482
390.697
40.959
400.431
410.918
420.269
430.253
440.0356
450.483
460.145
470.0336
480.0779
490.271
50.476
500.603
510.602
520.139
530.945
540.692
550.974
560.897
570.161
580.175
590.977
60.658
600.636
610.165
620.165
630.592
640.213
650.722
660.176
670.632
680.0483
690.837
70.0999
700.143
710.0319
720.0839
730.125
740.568
750.00157
760.269
770.654
780.0651
790.366
80.187
800.969
810.0212
820.283
830.818
840.994
850.345
860.328
870.192
880.868
890.68
90.7
900.0112
910.969
920.411
930.725
940.0151
950.028
960.138
970.373
980.328
990.202



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11258


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0002092 (bone marrow cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
4960 (bone marrow cancer)
0070004 (myeloma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100583 (bone marrow cancer cell sample)
0100898 (myeloma cell sample)
0100899 (myeloma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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