FF:10484-107A7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005006 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007908;DRR008780;DRZ000205;DRZ001590;DRZ011555;DRZ012940 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100224,FF:0100578 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.07!116.44!ELF3;;chr12:100867627..100867652,+!p1@NR1H4!2.00!98.13!NR1H4;;chr1:197886461..197886558,+!p1@LHX9!1.96!90.95!LHX9;;chr1:201979703..201979721,+!p2@ELF3!1.92!81.79!ELF3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.90!78.64!SEBOX;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.84!67.72!SEBOX;;chr12:100867653..100867677,+!p2@NR1H4!1.83!67.03!NR1H4;;chr11:61520075..61520136,+!p1@C11orf9!1.75!113.29!C11orf9;;chr7:73038839..73038862,-!p1@MLXIPL!1.71!50.49!MLXIPL;;chr3:12330560..12330579,+!p1@PPARG!1.66!50.99!PPARG;;chr17:41622765..41622821,-!p2@ETV4!1.56!52.86!ETV4;;chr20:22564895..22564910,-!p1@FOXA2!1.46!27.76!FOXA2;;chr17:41622731..41622764,-!p5@ETV4!1.44!26.38!ETV4;;chr18:55102628..55102646,+!p2@ONECUT2!1.43!25.79!ONECUT2;;chrX:30327504..30327509,-!p1@NR0B1!1.42!25.59!NR0B1;;chr19:50432453..50432468,+!p1@ATF5!1.40!1284.38!ATF5;;chr8:76319876..76319926,+!p1@HNF4G!1.38!23.03!HNF4G;;chr19:33793430..33793447,-!p1@CEBPA!1.37!91.44!CEBPA;;chr18:55102598..55102623,+!p1@ONECUT2!1.37!22.34!ONECUT2;;chr3:193853927..193853944,+!p1@HES1!1.35!668.72!HES1;;chr1:119530493..119530572,-!p1@TBX15!1.34!20.87!TBX15;;chr2:176969228..176969260,+!p1@HOXD11!1.34!20.67!HOXD11;;chr14:38064429..38064486,-!p1@FOXA1!1.33!20.37!FOXA1;;chr1:199996733..199996781,+!p1@NR5A2!1.29!18.60!NR5A2;;chr17:46703687..46703740,-!p1@HOXB9!1.28!17.91!HOXB9;;chr15:53082521..53082549,-!p1@ONECUT1!1.26!17.22!ONECUT1;;chr17:46682321..46682362,-!p1@HOXB6!1.25!16.83!HOXB6;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.63!GATA4;;chr1:214161272..214161322,+!p1@PROX1!1.22!22.15!PROX1;;chr1:27240455..27240474,-!p1@NR0B2!1.22!15.65!NR0B2;;chr10:94449703..94449718,+!p1@HHEX!1.15!50.49!HHEX;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.12!12.21!SEBOX;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.11!11.91!MEF2B;;chr11:16419037..16419064,-!p3@SOX6!1.10!11.71!SOX6;;chr7:156803329..156803362,-!p1@MNX1!1.10!11.52!MNX1;;chr5:92918919..92918942,+!p1@NR2F1!1.09!50.99!NR2F1;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.32!PITX1;;chr17:41622925..41622976,-!p3@ETV4!1.09!16.93!ETV4;;chr15:37392094..37392116,-!p6@MEIS2!1.09!14.08!MEIS2;;chr11:31832658..31832681,-!p1@PAX6!1.03!9.65!PAX6;;chr6:1312325..1312340,+!p1@FOXQ1!1.02!15.55!FOXQ1;;chr1:199996702..199996732,+!p5@NR5A2!1.02!9.45!NR5A2;;chr17:41623692..41623715,-!p1@ETV4!1.00!39.17!ETV4;;chr3:12329397..12329433,+!p2@PPARG!1.00!20.87!PPARG;;chr11:34663913..34663945,+!p6@EHF!1.00!8.96!EHF;;chr3:157823517..157823562,-!p1@SHOX2!0.99!9.45!SHOX2;;chr3:69915369..69915381,+!p4@MITF!0.99!8.86!MITF;;chr2:45236540..45236577,-!p1@SIX2!0.99!8.76!SIX2;;chr6:134210243..134210257,+!p1@TCF21!0.99!8.76!TCF21;;chr17:53342311..53342400,+!p1@HLF!0.98!9.84!HLF;;chr11:34664014..34664045,+!p4@EHF!0.97!8.27!EHF;;chr6:126240380..126240430,+!p2@NCOA7!0.96!21.85!NCOA7;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.96!8.07!HOXC5;;chr3:69915385..69915438,+!p3@MITF!0.95!7.97!MITF;;chr19:45971246..45971265,+!p1@FOSB!0.94!148.72!FOSB;;chr12:80084737..80084763,-!p3@PAWR!0.94!29.92!PAWR;;chr2:239148671..239148686,-!p1@HES6!0.93!28.74!HES6;;chr13:100634031..100634045,+!p1@ZIC2!0.93!7.58!ZIC2;;chr16:52581025..52581072,-!p1@TOX3!0.93!7.48!TOX3;;chr17:36105042..36105060,-!p1@HNF1B!0.92!7.38!HNF1B;;chr18:19749541..19749557,+!p1@GATA6!0.91!23.23!GATA6;;chr19:33865223..33865254,+!p5@CEBPG!0.91!7.19!CEBPG;;chr20:42984330..42984364,+!p2@HNF4A!0.91!7.19!HNF4A;;chr5:134369879..134369898,-!p2@PITX1!0.91!7.09!PITX1;;chr12:121416455..121416479,+!p2@HNF1A!0.91!7.09!HNF1A;;chr9:4300050..4300118,-!p1@GLIS3!0.88!45.57!GLIS3;;chr17:41623259..41623278,-!p7@ETV4!0.88!7.78!ETV4;;chr2:176969179..176969226,+!p2@HOXD11!0.88!6.59!HOXD11;;chr17:46692457..46692484,-!p2@HOXB8!0.87!6.50!HOXB8;;chr1:212782094..212782109,+!p1@ATF3!0.86!182.19!ATF3;;chr9:20621927..20621996,-!p3@MLLT3!0.86!10.93!MLLT3;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.85!6.00!EN2;;chr5:76383070..76383117,-!p3@ZBED3!0.84!12.50!ZBED3;;chr8:123793988..123794016,+!p1@ZHX2!0.84!10.93!ZHX2;;chr14:37131058..37131139,+!p1@PAX9!0.84!5.91!PAX9;;chr12:54378923..54378966,+!p1@HOXC10!0.83!5.71!HOXC10;;chr16:52580953..52580992,-!p2@TOX3!0.83!5.71!TOX3;;chr15:76629123..76629151,+!p1@ISL2!0.81!6.10!ISL2;;chr1:214161358..214161377,+!p3@PROX1!0.81!5.41!PROX1;;chr19:33864600..33864732,+!p1@CEBPG!0.80!163.09!CEBPG;;chr3:169381420..169381535,-!p1@MECOM!0.80!6.40!MECOM;;chr12:100867736..100867750,+!p4@NR1H4!0.80!5.32!NR1H4;;chr8:60031682..60031710,-!p2@TOX!0.79!8.66!TOX;;chr17:79881332..79881348,-!p3@MAFG!0.79!7.78!MAFG;;chr8:80679993..80680011,-!p1@HEY1!0.79!7.68!HEY1;;chr1:200011711..200011752,+!p3@NR5A2!0.79!5.22!NR5A2;;chr19:46367576..46367592,+!p1@FOXA3!0.79!5.12!FOXA3;;chr12:121416489..121416503,+!p4@HNF1A!0.79!5.12!HNF1A;;chr5:92918894..92918912,+!p2@NR2F1!0.78!17.91!NR2F1;;chr13:100634130..100634143,+!p3@ZIC2!0.78!5.02!ZIC2;;chr4:149363475..149363492,-!p2@NR3C2!0.78!5.02!NR3C2;;chr9:22447422..22447483,+!p1@DMRTA1!0.78!5.02!DMRTA1;;chr5:158526917..158526932,-!p1@EBF1!0.77!12.89!EBF1;;chr9:1050331..1050363,+!p1@DMRT2!0.77!4.92!DMRT2;;chr12:54393880..54393962,+!p1@HOXC9!0.77!4.92!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.77!4.82!HOXC5;;chr19:4153613..4153652,+!p1@CREB3L3!0.77!4.82!CREB3L3;;chr5:76383133..76383186,-!p2@ZBED3!0.76!10.43!ZBED3;;chr19:50435736..50435781,+!p3@ATF5!0.76!6.79!ATF5;;chr12:54380404..54380433,+!p3@HOXC10!0.76!4.72!HOXC10;;chr1:204042233..204042249,+!p1@SOX13!0.75!32.19!SOX13;;chr6:126102292..126102329,+!p3@NCOA7!0.75!16.73!NCOA7;;chr1:61547894..61547968,+!p2@NFIA!0.75!14.47!NFIA;;chr1:164528687..164528711,+!p6@PBX1!0.75!5.51!PBX1;;chr13:100623375..100623425,-!p1@ZIC5!0.75!4.63!ZIC5;;chr3:12329358..12329393,+!p3@PPARG!0.74!11.91!PPARG;;chr3:114343826..114343869,-!p4@ZBTB20!0.74!9.55!ZBTB20;;chr7:27219833..27219845,-!p7@HOXA10!0.74!4.53!HOXA10;;chr7:27192185..27192209,-!p1@HOXA3!0.73!4.43!HOXA3;;chr2:177001290..177001315,+!p1@HOXD3!0.73!4.33!HOXD3;;chr4:149363494..149363543,-!p1@NR3C2!0.73!4.33!NR3C2;;chr2:172967621..172967637,-!p1@DLX2!0.72!12.50!DLX2;;chr12:57914286..57914304,-!p1@DDIT3!0.71!170.87!DDIT3;;chr5:72744594..72744609,-!p1@FOXD1!0.71!21.16!FOXD1;;chr8:60031619..60031676,-!p1@TOX!0.71!9.55!TOX;;chr2:71127699..71127744,+!p1@VAX2!0.71!9.06!VAX2;;chr6:126070769..126070801,+!p1@HEY2!0.71!4.92!HEY2;;chr12:100867695..100867706,+!p6@NR1H4!0.71!4.13!NR1H4;;chr3:114343768..114343822,-!p1@ZBTB20!0.70!19.78!ZBTB20;;chr2:122042770..122042785,-!p1@TFCP2L1!0.70!4.04!TFCP2L1;;chr1:119530636..119530653,-!p2@TBX15!0.70!4.04!TBX15;;chr12:100867777..100867788,+!p5@NR1H4!0.70!4.04!NR1H4;;chr7:17338266..17338282,+!p1@AHR!0.69!47.93!AHR;;chr9:14314131..14314147,-!p2@NFIB!0.69!24.51!NFIB;;chr19:53360870..53360873,-!p1@ZNF468!0.69!16.04!ZNF468;;chr20:51588873..51588953,+!p1@TSHZ2!0.69!5.32!TSHZ2;;chr8:86089417..86089440,+!p2@E2F5!0.68!8.27!E2F5;;chr9:4299959..4299974,-!p4@GLIS3!0.68!6.50!GLIS3;;chr17:41277372..41277418,-!p1@BRCA1!0.67!15.06!BRCA1;;chr1:214161328..214161348,+!p2@PROX1!0.67!3.64!PROX1;;chr7:27196267..27196311,-!p1@HOXA7!0.67!3.64!HOXA7;;chr13:73633131..73633149,+!p1@KLF5!0.66!44.19!KLF5;;chr12:26277956..26277980,-!p1@BHLHE41!0.66!14.57!BHLHE41;;chr7:28448965..28448994,+!p2@CREB5!0.66!14.27!CREB5;;chr8:123793860..123793921,+!p2@ZHX2!0.66!11.02!ZHX2;;chr17:41622834..41622883,-!p6@ETV4!0.66!4.53!ETV4;;chr17:46690839..46690884,-!p1@HOXB8!0.66!3.54!HOXB8;;chr17:46687959..46688007,-!p2@HOXB7!0.65!5.02!HOXB7;;chr17:36105074..36105086,-!p2@HNF1B!0.65!3.44!HNF1B;;chr6:126102254..126102289,+!p5@NCOA7!0.64!10.53!NCOA7;;chr13:72441315..72441454,-!p1@DACH1!0.64!7.48!DACH1;;chr20:6748325..6748352,+!p1@BMP2!0.64!5.12!BMP2;;chr6:126240442..126240459,+!p4@NCOA7!0.64!4.43!NCOA7;;chr7:27153454..27153469,-!p2@HOXA3!0.64!3.35!HOXA3;;chr17:46703212..46703238,-!p2@HOXB9!0.64!3.35!HOXB9;;chr13:79177703..79177729,-!p2@POU4F1!0.64!3.35!POU4F1;;chr7:14028743..14028799,-!p3@ETV1!0.63!4.33!ETV1;;chr3:157824001..157824078,-!p2@SHOX2!0.63!3.25!SHOX2;;chr1:200008734..200008765,+!p2@NR5A2!0.63!3.25!NR5A2;;chr12:124457746..124457828,+!p1@ZNF664!0.62!144.98!ZNF664;;chrX:84499081..84499115,+!p2@ZNF711!0.62!5.02!ZNF711;;chr12:100897130..100897149,+!p3@NR1H4!0.62!3.15!NR1H4;;chr13:100638100..100638115,+!p4@ZIC2!0.62!3.15!ZIC2;;chr19:33865166..33865182,+!p7@CEBPG!0.62!3.15!CEBPG;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.61!36.62!GLIS2;;chr19:37019136..37019178,-!p1@ZNF260!0.61!29.92!ZNF260;;chr7:17338324..17338341,+!p3@AHR!0.61!12.11!AHR;;chr18:19749517..19749531,+!p3@GATA6!0.61!6.10!GATA6;;chr17:46688334..46688385,-!p1@HOXB7!0.61!4.72!HOXB7;;chr1:47903709..47903764,+!p1@BC169308!0.61!3.54!FOXD2;;chr20:22565185..22565223,-!p3@FOXA2!0.61!3.05!FOXA2;;chr21:38071430..38071456,+!p1@SIM2!0.61!3.05!SIM2;;chr2:119605214..119605230,-!p1@EN1!0.61!3.05!EN1;;chr6:41514078..41514158,+!p1@FOXP4!0.60!32.68!FOXP4;;chr8:146228270..146228295,-!p1@ZNF252!0.60!19.88!ZNF252P;;chr19:59084872..59084920,-!p2@MZF1!0.60!9.15!MZF1;;chr12:54447599..54447630,+!p3@HOXC4!0.60!3.84!HOXC4;;chr17:41623667..41623682,-!p8@ETV4!0.60!3.25!ETV4;;chr18:55102806..55102847,+!p3@ONECUT2!0.60!2.95!ONECUT2;;chr11:31832610..31832639,-!p5@PAX6!0.60!2.95!PAX6;;chr4:149366111..149366128,-!p7@NR3C2!0.60!2.95!NR3C2;;chr1:61548225..61548299,+!p1@NFIA!0.59!45.97!NFIA;;chr10:94449675..94449694,+!p2@HHEX!0.59!8.96!HHEX;;chr5:158526459..158526481,-!p2@EBF1!0.59!4.13!EBF1;;chr10:31288398..31288455,-!p2@ZNF438!0.59!3.54!ZNF438;;chr7:14028488..14028516,-!p2@ETV1!0.59!3.25!ETV1;;chr14:38064590..38064606,-!p2@FOXA1!0.59!2.85!FOXA1;;chr1:2985760..2985774,+!p1@PRDM16!0.59!2.85!PRDM16;;chr8:103667935..103667960,-!p1@KLF10!0.58!154.63!KLF10;;chr15:37392616..37392638,-!p2@MEIS2!0.58!10.24!MEIS2;;chr19:57791328..57791377,+!p2@ZNF460!0.57!40.85!ZNF460;;chr10:114710098..114710130,+!p2@TCF7L2!0.57!25.10!TCF7L2;;chr12:121416340..121416360,+!p1@HNF1A!0.57!2.76!HNF1A;;chr17:79881433..79881452,-!p6@MAFG!0.57!2.76!MAFG;;chr17:70117153..70117174,+!p1@SOX9!0.56!33.47!SOX9;;chr19:44952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| |expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.07!116.44!ELF3;;chr12:100867627..100867652,+!p1@NR1H4!2.00!98.13!NR1H4;;chr1:197886461..197886558,+!p1@LHX9!1.96!90.95!LHX9;;chr1:201979703..201979721,+!p2@ELF3!1.92!81.79!ELF3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.90!78.64!SEBOX;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.84!67.72!SEBOX;;chr12:100867653..100867677,+!p2@NR1H4!1.83!67.03!NR1H4;;chr11:61520075..61520136,+!p1@C11orf9!1.75!113.29!C11orf9;;chr7:73038839..73038862,-!p1@MLXIPL!1.71!50.49!MLXIPL;;chr3:12330560..12330579,+!p1@PPARG!1.66!50.99!PPARG;;chr17:41622765..41622821,-!p2@ETV4!1.56!52.86!ETV4;;chr20:22564895..22564910,-!p1@FOXA2!1.46!27.76!FOXA2;;chr17:41622731..41622764,-!p5@ETV4!1.44!26.38!ETV4;;chr18:55102628..55102646,+!p2@ONECUT2!1.43!25.79!ONECUT2;;chrX:30327504..30327509,-!p1@NR0B1!1.42!25.59!NR0B1;;chr19:50432453..50432468,+!p1@ATF5!1.40!1284.38!ATF5;;chr8:76319876..76319926,+!p1@HNF4G!1.38!23.03!HNF4G;;chr19:33793430..33793447,-!p1@CEBPA!1.37!91.44!CEBPA;;chr18:55102598..55102623,+!p1@ONECUT2!1.37!22.34!ONECUT2;;chr3:193853927..193853944,+!p1@HES1!1.35!668.72!HES1;;chr1:119530493..119530572,-!p1@TBX15!1.34!20.87!TBX15;;chr2:176969228..176969260,+!p1@HOXD11!1.34!20.67!HOXD11;;chr14:38064429..38064486,-!p1@FOXA1!1.33!20.37!FOXA1;;chr1:199996733..199996781,+!p1@NR5A2!1.29!18.60!NR5A2;;chr17:46703687..46703740,-!p1@HOXB9!1.28!17.91!HOXB9;;chr15:53082521..53082549,-!p1@ONECUT1!1.26!17.22!ONECUT1;;chr17:46682321..46682362,-!p1@HOXB6!1.25!16.83!HOXB6;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.63!GATA4;;chr1:214161272..214161322,+!p1@PROX1!1.22!22.15!PROX1;;chr1:27240455..27240474,-!p1@NR0B2!1.22!15.65!NR0B2;;chr10:94449703..94449718,+!p1@HHEX!1.15!50.49!HHEX;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.12!12.21!SEBOX;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.11!11.91!MEF2B;;chr11:16419037..16419064,-!p3@SOX6!1.10!11.71!SOX6;;chr7:156803329..156803362,-!p1@MNX1!1.10!11.52!MNX1;;chr5:92918919..92918942,+!p1@NR2F1!1.09!50.99!NR2F1;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.32!PITX1;;chr17:41622925..41622976,-!p3@ETV4!1.09!16.93!ETV4;;chr15:37392094..37392116,-!p6@MEIS2!1.09!14.08!MEIS2;;chr11:31832658..31832681,-!p1@PAX6!1.03!9.65!PAX6;;chr6:1312325..1312340,+!p1@FOXQ1!1.02!15.55!FOXQ1;;chr1:199996702..199996732,+!p5@NR5A2!1.02!9.45!NR5A2;;chr17:41623692..41623715,-!p1@ETV4!1.00!39.17!ETV4;;chr3:12329397..12329433,+!p2@PPARG!1.00!20.87!PPARG;;chr11:34663913..34663945,+!p6@EHF!1.00!8.96!EHF;;chr3:157823517..157823562,-!p1@SHOX2!0.99!9.45!SHOX2;;chr3:69915369..69915381,+!p4@MITF!0.99!8.86!MITF;;chr2:45236540..45236577,-!p1@SIX2!0.99!8.76!SIX2;;chr6:134210243..134210257,+!p1@TCF21!0.99!8.76!TCF21;;chr17:53342311..53342400,+!p1@HLF!0.98!9.84!HLF;;chr11:34664014..34664045,+!p4@EHF!0.97!8.27!EHF;;chr6:126240380..126240430,+!p2@NCOA7!0.96!21.85!NCOA7;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.96!8.07!HOXC5;;chr3:69915385..69915438,+!p3@MITF!0.95!7.97!MITF;;chr19:45971246..45971265,+!p1@FOSB!0.94!148.72!FOSB;;chr12:80084737..80084763,-!p3@PAWR!0.94!29.92!PAWR;;chr2:239148671..239148686,-!p1@HES6!0.93!28.74!HES6;;chr13:100634031..100634045,+!p1@ZIC2!0.93!7.58!ZIC2;;chr16:52581025..52581072,-!p1@TOX3!0.93!7.48!TOX3;;chr17:36105042..36105060,-!p1@HNF1B!0.92!7.38!HNF1B;;chr18:19749541..19749557,+!p1@GATA6!0.91!23.23!GATA6;;chr19:33865223..33865254,+!p5@CEBPG!0.91!7.19!CEBPG;;chr20:42984330..42984364,+!p2@HNF4A!0.91!7.19!HNF4A;;chr5:134369879..134369898,-!p2@PITX1!0.91!7.09!PITX1;;chr12:121416455..121416479,+!p2@HNF1A!0.91!7.09!HNF1A;;chr9:4300050..4300118,-!p1@GLIS3!0.88!45.57!GLIS3;;chr17:41623259..41623278,-!p7@ETV4!0.88!7.78!ETV4;;chr2:176969179..176969226,+!p2@HOXD11!0.88!6.59!HOXD11;;chr17:46692457..46692484,-!p2@HOXB8!0.87!6.50!HOXB8;;chr1:212782094..212782109,+!p1@ATF3!0.86!182.19!ATF3;;chr9:20621927..20621996,-!p3@MLLT3!0.86!10.93!MLLT3;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.85!6.00!EN2;;chr5:76383070..76383117,-!p3@ZBED3!0.84!12.50!ZBED3;;chr8:123793988..123794016,+!p1@ZHX2!0.84!10.93!ZHX2;;chr14:37131058..37131139,+!p1@PAX9!0.84!5.91!PAX9;;chr12:54378923..54378966,+!p1@HOXC10!0.83!5.71!HOXC10;;chr16:52580953..52580992,-!p2@TOX3!0.83!5.71!TOX3;;chr15:76629123..76629151,+!p1@ISL2!0.81!6.10!ISL2;;chr1:214161358..214161377,+!p3@PROX1!0.81!5.41!PROX1;;chr19:33864600..33864732,+!p1@CEBPG!0.80!163.09!CEBPG;;chr3:169381420..169381535,-!p1@MECOM!0.80!6.40!MECOM;;chr12:100867736..100867750,+!p4@NR1H4!0.80!5.32!NR1H4;;chr8:60031682..60031710,-!p2@TOX!0.79!8.66!TOX;;chr17:79881332..79881348,-!p3@MAFG!0.79!7.78!MAFG;;chr8:80679993..80680011,-!p1@HEY1!0.79!7.68!HEY1;;chr1:200011711..200011752,+!p3@NR5A2!0.79!5.22!NR5A2;;chr19:46367576..46367592,+!p1@FOXA3!0.79!5.12!FOXA3;;chr12:121416489..121416503,+!p4@HNF1A!0.79!5.12!HNF1A;;chr5:92918894..92918912,+!p2@NR2F1!0.78!17.91!NR2F1;;chr13:100634130..100634143,+!p3@ZIC2!0.78!5.02!ZIC2;;chr4:149363475..149363492,-!p2@NR3C2!0.78!5.02!NR3C2;;chr9:22447422..22447483,+!p1@DMRTA1!0.78!5.02!DMRTA1;;chr5:158526917..158526932,-!p1@EBF1!0.77!12.89!EBF1;;chr9:1050331..1050363,+!p1@DMRT2!0.77!4.92!DMRT2;;chr12:54393880..54393962,+!p1@HOXC9!0.77!4.92!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.77!4.82!HOXC5;;chr19:4153613..4153652,+!p1@CREB3L3!0.77!4.82!CREB3L3;;chr5:76383133..76383186,-!p2@ZBED3!0.76!10.43!ZBED3;;chr19:50435736..50435781,+!p3@ATF5!0.76!6.79!ATF5;;chr12:54380404..54380433,+!p3@HOXC10!0.76!4.72!HOXC10;;chr1:204042233..204042249,+!p1@SOX13!0.75!32.19!SOX13;;chr6:126102292..126102329,+!p3@NCOA7!0.75!16.73!NCOA7;;chr1:61547894..61547968,+!p2@NFIA!0.75!14.47!NFIA;;chr1:164528687..164528711,+!p6@PBX1!0.75!5.51!PBX1;;chr13:100623375..100623425,-!p1@ZIC5!0.75!4.63!ZIC5;;chr3:12329358..12329393,+!p3@PPARG!0.74!11.91!PPARG;;chr3:114343826..114343869,-!p4@ZBTB20!0.74!9.55!ZBTB20;;chr7:27219833..27219845,-!p7@HOXA10!0.74!4.53!HOXA10;;chr7:27192185..27192209,-!p1@HOXA3!0.73!4.43!HOXA3;;chr2:177001290..177001315,+!p1@HOXD3!0.73!4.33!HOXD3;;chr4:149363494..149363543,-!p1@NR3C2!0.73!4.33!NR3C2;;chr2:172967621..172967637,-!p1@DLX2!0.72!12.50!DLX2;;chr12:57914286..57914304,-!p1@DDIT3!0.71!170.87!DDIT3;;chr5:72744594..72744609,-!p1@FOXD1!0.71!21.16!FOXD1;;chr8:60031619..60031676,-!p1@TOX!0.71!9.55!TOX;;chr2:71127699..71127744,+!p1@VAX2!0.71!9.06!VAX2;;chr6:126070769..126070801,+!p1@HEY2!0.71!4.92!HEY2;;chr12:100867695..100867706,+!p6@NR1H4!0.71!4.13!NR1H4;;chr3:114343768..114343822,-!p1@ZBTB20!0.70!19.78!ZBTB20;;chr2:122042770..122042785,-!p1@TFCP2L1!0.70!4.04!TFCP2L1;;chr1:119530636..119530653,-!p2@TBX15!0.70!4.04!TBX15;;chr12:100867777..100867788,+!p5@NR1H4!0.70!4.04!NR1H4;;chr7:17338266..17338282,+!p1@AHR!0.69!47.93!AHR;;chr9:14314131..14314147,-!p2@NFIB!0.69!24.51!NFIB;;chr19:53360870..53360873,-!p1@ZNF468!0.69!16.04!ZNF468;;chr20:51588873..51588953,+!p1@TSHZ2!0.69!5.32!TSHZ2;;chr8:86089417..86089440,+!p2@E2F5!0.68!8.27!E2F5;;chr9:4299959..4299974,-!p4@GLIS3!0.68!6.50!GLIS3;;chr17:41277372..41277418,-!p1@BRCA1!0.67!15.06!BRCA1;;chr1:214161328..214161348,+!p2@PROX1!0.67!3.64!PROX1;;chr7:27196267..27196311,-!p1@HOXA7!0.67!3.64!HOXA7;;chr13:73633131..73633149,+!p1@KLF5!0.66!44.19!KLF5;;chr12:26277956..26277980,-!p1@BHLHE41!0.66!14.57!BHLHE41;;chr7:28448965..28448994,+!p2@CREB5!0.66!14.27!CREB5;;chr8:123793860..123793921,+!p2@ZHX2!0.66!11.02!ZHX2;;chr17:41622834..41622883,-!p6@ETV4!0.66!4.53!ETV4;;chr17:46690839..46690884,-!p1@HOXB8!0.66!3.54!HOXB8;;chr17:46687959..46688007,-!p2@HOXB7!0.65!5.02!HOXB7;;chr17:36105074..36105086,-!p2@HNF1B!0.65!3.44!HNF1B;;chr6:126102254..126102289,+!p5@NCOA7!0.64!10.53!NCOA7;;chr13:72441315..72441454,-!p1@DACH1!0.64!7.48!DACH1;;chr20:6748325..6748352,+!p1@BMP2!0.64!5.12!BMP2;;chr6:126240442..126240459,+!p4@NCOA7!0.64!4.43!NCOA7;;chr7:27153454..27153469,-!p2@HOXA3!0.64!3.35!HOXA3;;chr17:46703212..46703238,-!p2@HOXB9!0.64!3.35!HOXB9;;chr13:79177703..79177729,-!p2@POU4F1!0.64!3.35!POU4F1;;chr7:14028743..14028799,-!p3@ETV1!0.63!4.33!ETV1;;chr3:157824001..157824078,-!p2@SHOX2!0.63!3.25!SHOX2;;chr1:200008734..200008765,+!p2@NR5A2!0.63!3.25!NR5A2;;chr12:124457746..124457828,+!p1@ZNF664!0.62!144.98!ZNF664;;chrX:84499081..84499115,+!p2@ZNF711!0.62!5.02!ZNF711;;chr12:100897130..100897149,+!p3@NR1H4!0.62!3.15!NR1H4;;chr13:100638100..100638115,+!p4@ZIC2!0.62!3.15!ZIC2;;chr19:33865166..33865182,+!p7@CEBPG!0.62!3.15!CEBPG;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.61!36.62!GLIS2;;chr19:37019136..37019178,-!p1@ZNF260!0.61!29.92!ZNF260;;chr7:17338324..17338341,+!p3@AHR!0.61!12.11!AHR;;chr18:19749517..19749531,+!p3@GATA6!0.61!6.10!GATA6;;chr17:46688334..46688385,-!p1@HOXB7!0.61!4.72!HOXB7;;chr1:47903709..47903764,+!p1@BC169308!0.61!3.54!FOXD2;;chr20:22565185..22565223,-!p3@FOXA2!0.61!3.05!FOXA2;;chr21:38071430..38071456,+!p1@SIM2!0.61!3.05!SIM2;;chr2:119605214..119605230,-!p1@EN1!0.61!3.05!EN1;;chr6:41514078..41514158,+!p1@FOXP4!0.60!32.68!FOXP4;;chr8:146228270..146228295,-!p1@ZNF252!0.60!19.88!ZNF252P;;chr19:59084872..59084920,-!p2@MZF1!0.60!9.15!MZF1;;chr12:54447599..54447630,+!p3@HOXC4!0.60!3.84!HOXC4;;chr17:41623667..41623682,-!p8@ETV4!0.60!3.25!ETV4;;chr18:55102806..55102847,+!p3@ONECUT2!0.60!2.95!ONECUT2;;chr11:31832610..31832639,-!p5@PAX6!0.60!2.95!PAX6;;chr4:149366111..149366128,-!p7@NR3C2!0.60!2.95!NR3C2;;chr1:61548225..61548299,+!p1@NFIA!0.59!45.97!NFIA;;chr10:94449675..94449694,+!p2@HHEX!0.59!8.96!HHEX;;chr5:158526459..158526481,-!p2@EBF1!0.59!4.13!EBF1;;chr10:31288398..31288455,-!p2@ZNF438!0.59!3.54!ZNF438;;chr7:14028488..14028516,-!p2@ETV1!0.59!3.25!ETV1;;chr14:38064590..38064606,-!p2@FOXA1!0.59!2.85!FOXA1;;chr1:2985760..2985774,+!p1@PRDM16!0.59!2.85!PRDM16;;chr8:103667935..103667960,-!p1@KLF10!0.58!154.63!KLF10;;chr15:37392616..37392638,-!p2@MEIS2!0.58!10.24!MEIS2;;chr19:57791328..57791377,+!p2@ZNF460!0.57!40.85!ZNF460;;chr10:114710098..114710130,+!p2@TCF7L2!0.57!25.10!TCF7L2;;chr12:121416340..121416360,+!p1@HNF1A!0.57!2.76!HNF1A;;chr17:79881433..79881452,-!p6@MAFG!0.57!2.76!MAFG;;chr17:70117153..70117174,+!p1@SOX9!0.56!33.47!SOX9;;chr19:44952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3.74!ZNF235;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.22!3.54!ZNF525;;chr2:19558373..19558392,-!p1@OSR1!0.22!3.35!OSR1;;chr15:100106244..100106259,+!p2@MEF2A!0.22!2.76!MEF2A;;chr7:1570388..1570418,+!p2@MAFK!0.22!2.46!MAFK;;chr6:26659967..26659982,-!p1@ZNF322P1,p1@ZNF322!0.22!2.36!ZNF322;;chr1:23696308..23696339,-!p2@ZNF436!0.22!2.36!ZNF436;;chr11:63684602..63684664,-!p1@RCOR2!0.22!2.17!RCOR2;;chr19:55987998..55988026,+!p2@ZNF628!0.22!1.97!ZNF628;;chr19:21265028..21265052,+!p2@ZNF714!0.22!1.87!ZNF714;;chr10:114711019..114711041,+!p7@TCF7L2!0.22!1.48!TCF7L2;;chr8:145159277..145159282,+!p7@MAF1!0.22!1.48!MAF1;;chr19:37708814..37708838,+!p2@ZNF383!0.22!1.38!ZNF383;;chr9:99180662..99180690,-!p2@ZNF367!0.22!1.28!ZNF367;;chr20:306221..306232,+!p4@SOX12!0.22!1.18!SOX12;;chr6:45390077..45390105,+!p9@RUNX2!0.22!1.08!RUNX2;;chr12:66218003..66218018,+!p9@HMGA2!0.22!0.98!HMGA2;;chr2:25565329..25565342,-!p6@DNMT3A!0.22!0.89!DNMT3A;;chr19:47422934..47422958,+!p4@ARHGAP35!0.22!0.89!ARHGAP35;;chr11:62369291..62369351,-!p1@MTA2!0.21!26.87!MTA2;;chr20:33413416..33413466,-!p1@NCOA6!0.21!17.13!NCOA6;;chr3:179040767..179040866,+!p1@ZNF639!0.21!14.67!ZNF639;;chr7:64838754..64838778,+!p1@ZNF92!0.21!13.39!ZNF92;;chr12:133532864..133532899,-!p1@ZNF605!0.21!10.24!ZNF605;;chr12:27485785..27485816,+!p1@ARNTL2!0.21!9.45!ARNTL2;;chr4:87928413..87928433,+!p3@AFF1!0.21!8.37!AFF1;;chr19:57831829..57831890,+!p1@ZNF543!0.21!8.37!ZNF543;;chr2:178257401..178257432,-!p4@NFE2L2!0.21!7.58!NFE2L2;;chr12:57400261..57400344,-!p1@ZBTB39!0.21!6.20!ZBTB39;;chr19:44617538..44617598,+!p1@ZNF225!0.21!5.02!ZNF225;;chrX:46404811..46404869,-!p1@ZNF674!0.21!4.72!ZNF674;;chr9:115818951..115819011,-!p1@ZFP37!0.21!3.74!ZFP37;;chr19:36545291..36545314,-!p2@THAP8!0.21!2.85!THAP8;;chr19:37341160..37341194,-!p2@ZNF790!0.21!2.36!ZNF790;;chr3:23986748..23986761,+!p3@NR1D2!0.21!2.36!NR1D2;;chr12:122516678..122516687,+!p3@MLXIP!0.21!1.97!MLXIP;;chr19:44598560..44598576,+!p3@ZNF224!0.21!1.57!ZNF224;;chr2:74730430..74730451,-!p1@LBX2!0.21!1.57!LBX2;;chr6:43337124..43337144,-!p4@ZNF318!0.21!1.28!ZNF318;;chr19:58987786..58987805,+!p3@ZNF446!0.21!1.28!ZNF446;;chr18:19749386..19749404,+!p2@GATA6!0.21!1.28!GATA6;;chr14:21566540..21566580,-!p2@ZNF219!0.21!1.18!ZNF219;;chr12:80083807..80083859,-!p11@PAWR!0.21!0.98!PAWR;;chr7:14029312..14029325,-!p4@ETV1!0.21!0.98!ETV1;;chr8:81397846..81397860,+!p3@ZBTB10!0.21!0.98!ZBTB10;;chr10:44144240..44144252,-!p4@ZNF32!0.21!0.89!ZNF32;;chr15:76629097..76629120,+!p2@ISL2!0.21!0.79!ISL2;;chr6:21594252..21594285,+!p11@SOX4!0.21!0.79!SOX4;;chr1:151319283..151319314,-!p4@RFX5!0.21!0.79!RFX5;;chr1:38512457..38512474,-!p1@POU3F1!0.21!0.79!POU3F1;;chr8:102217817..102217936,-!p1@ZNF706!0.20!67.32!ZNF706;;chr2:169312725..169312810,+!p1@CERS6!0.20!34.35!CERS6;;chr3:23986762..23986821,+!p1@NR1D2!0.20!21.75!NR1D2;;chr10:38299546..38299686,+!p1@ZNF33A!0.20!20.18!ZNF33A;;chr16:3355472..3355514,+!p1@ZNF75A!0.20!19.59!ZNF75A;;chr19:42580274..42580375,+!p1@ZNF574!0.20!15.85!ZNF574;;chr11:13299319..13299424,+!p1@ARNTL!0.20!13.78!ARNTL;;chr3:141868293..141868355,-!p2@TFDP2!0.20!11.81!TFDP2;;chr12:19592405..19592492,+!p2@AEBP2!0.20!11.61!AEBP2;;chr19:56879653..56879743,+!p1@ZNF542!0.20!9.94!ZNF542;;chr15:50647370..50647405,-!p2@GABPB1!0.20!7.09!GABPB1;;chr20:42543441..42543497,+!p1@TOX2!0.20!5.71!TOX2;;chr5:178157651..178157689,-!p1@ZNF354A!0.20!5.22!ZNF354A;;chr19:9785724..9785740,-!p2@ZNF562!0.20!4.92!ZNF562;;chr3:101395936..101395962,-!p2@ZBTB11!0.20!4.92!ZBTB11;;chr11:65667884..65667895,-!p2@FOSL1!0.20!4.82!FOSL1;;chr2:242576641..242576731,-!p2@THAP4!0.20!4.72!THAP4;;chr17:38498402..38498445,+!p3@RARA!0.20!4.43!RARA;;chr19:22034809..22034878,-!p2@ZNF43!0.20!4.33!ZNF43;;chr19:44598534..44598559,+!p2@ZNF224!0.20!3.64!ZNF224;;chr19:4067039..4067064,-!p3@ZBTB7A!0.20!3.44!ZBTB7A;; | ||
|ffid_belonging_in_development=CL:0000134,CL:0000223,UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316 | |||
|fonse_cell_line=FF:0100224,FF:0101120 | |fonse_cell_line=FF:0100224,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100224,FF:0101120 | |fonse_cell_line_closure=FF:0100224,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoma%2520cell%2520line%253aLi-7.CNhs11271.10484-107A7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoma%2520cell%2520line%253aLi-7.CNhs11271.10484-107A7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoma%2520cell%2520line%253aLi-7.CNhs11271.10484-107A7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatoma%2520cell%2520line%253aLi-7.CNhs11271.10484-107A7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatoma%2520cell%2520line%253aLi-7.CNhs11271.10484-107A7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10484-107A7 | |id=FF:10484-107A7 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100578 | |is_a=EFO:0002091;;FF:0000210;;FF:0100578 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11271 | |||
|library_id_phase_based=2:CNhs11271 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10484 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10484 | |||
|name=hepatoma cell line:Li-7 | |name=hepatoma cell line:Li-7 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11271,LSID758,release008,COMPLETED | |profile_hcage=CNhs11271,LSID758,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 78: | ||
|rna_weight_ug=36.4795 | |rna_weight_ug=36.4795 | ||
|sample_age=45 | |sample_age=45 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1941 | |sample_cell_catalog=RCB1941 | ||
|sample_cell_line=Li-7 | |sample_cell_line=Li-7 | ||
| Line 79: | Line 100: | ||
|top_motifs=HNF1A:3.68810866596;FOXQ1:2.50479712587;FOXD3:2.32699312722;ONECUT1,2:2.22184601046;ADNP_IRX_SIX_ZHX:2.00853097422;HNF4A_NR2F1,2:2.0028509829;FOXA2:1.7555617709;HOX{A6,A7,B6,B7}:1.72523561611;NR6A1:1.70665555788;AIRE:1.68106855961;NKX2-1,4:1.3937918511;T:1.37241876422;bHLH_family:1.21684780571;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.15265937972;DBP:1.1057026607;FOX{D1,D2}:1.09114724554;RORA:1.01513378726;NFE2L2:0.995691908652;CUX2:0.969203082386;POU6F1:0.954321163959;FOX{F1,F2,J1}:0.94907724752;EN1,2:0.854702615088;CEBPA,B_DDIT3:0.824771265751;STAT5{A,B}:0.802091078077;TEF:0.792641936231;ZBTB16:0.776397991976;NKX3-1:0.732720695823;CDX1,2,4:0.666859157585;PAX8:0.63671778062;PITX1..3:0.623502391548;ZEB1:0.62198562414;SOX2:0.609594289166;GATA6:0.604668073201;ELK1,4_GABP{A,B1}:0.601308954158;CRX:0.600618482819;ZNF143:0.584002621348;FOXP1:0.564696350041;RBPJ:0.561799743225;NKX3-2:0.559577682266;MYOD1:0.55728653626;SOX5:0.556127547521;NFY{A,B,C}:0.529035479456;HOX{A4,D4}:0.524711572098;FOX{I1,J2}:0.516745519107;TFAP2B:0.490457297065;HMGA1,2:0.488576987653;PBX1:0.476136713615;TFDP1:0.468782078554;EBF1:0.468619994676;PAX1,9:0.460111910273;EVI1:0.456996983344;TLX1..3_NFIC{dimer}:0.451767911007;LHX3,4:0.441091825545;RFX1:0.43449228103;E2F1..5:0.433270695952;HIC1:0.430179630745;NFE2:0.426918909814;NR1H4:0.422559740824;BPTF:0.390925991804;NKX6-1,2:0.383988978043;MED-1{core}:0.383826869549;ATF2:0.350591138925;YY1:0.345063449077;RXR{A,B,G}:0.340607823164;ZFP161:0.328088217275;ESRRA:0.309998117102;SNAI1..3:0.302287857952;NKX2-3_NKX2-5:0.298635565518;RFX2..5_RFXANK_RFXAP:0.277687525988;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.276939611743;HOXA9_MEIS1:0.269927412977;ATF4:0.263761321943;EP300:0.245840226007;OCT4_SOX2{dimer}:0.227934745231;BREu{core}:0.226535949889;STAT1,3:0.222428699369;IKZF2:0.217282747826;STAT2,4,6:0.213151271482;PDX1:0.209355173672;FOXL1:0.203196917986;AHR_ARNT_ARNT2:0.191817878366;TBP:0.176110105208;PATZ1:0.174490877854;MTE{core}:0.162839017364;IRF7:0.149943407504;MYB:0.137889134099;VSX1,2:0.136989306161;POU5F1:0.106758676688;SOX{8,9,10}:0.0893849395567;GFI1B:0.0651055612608;FOXN1:0.0626610073406;FOXP3:0.0574483536236;POU1F1:0.056616586565;EGR1..3:0.053943643145;NFIL3:0.0308014502709;TFAP2{A,C}:0.0279340810417;TEAD1:0.0183166659152;HAND1,2:-0.0115941272542;MEF2{A,B,C,D}:-0.0438306191817;CDC5L:-0.0460415151232;FOSL2:-0.049069155126;HES1:-0.0618051377042;LMO2:-0.0636065258741;PAX5:-0.0771020307972;NR5A1,2:-0.0787114045118;IKZF1:-0.0909366643272;IRF1,2:-0.0976633880526;NFIX:-0.0992032652253;HLF:-0.120358880744;SREBF1,2:-0.12358381392;NHLH1,2:-0.130199960619;PRRX1,2:-0.148820793656;MAZ:-0.174696359132;NRF1:-0.176055549465;ATF5_CREB3:-0.177864153207;UFEwm:-0.188387333891;SP1:-0.192237197291;NFKB1_REL_RELA:-0.194420453114;LEF1_TCF7_TCF7L1,2:-0.202284195576;FOS_FOS{B,L1}_JUN{B,D}:-0.227273525939;BACH2:-0.23098474345;GATA4:-0.236058786044;PAX4:-0.23669182347;SOX17:-0.23902886034;PRDM1:-0.272615062497;TBX4,5:-0.276484910769;ZNF384:-0.295976053669;NANOG:-0.305426916349;RREB1:-0.306895424602;TOPORS:-0.327128554861;XCPE1{core}:-0.327690144765;NFATC1..3:-0.331199736711;SRF:-0.332759821082;ZNF148:-0.353376468178;MYBL2:-0.368672438789;JUN:-0.376356026453;PAX2:-0.40020362717;GTF2A1,2:-0.402990871216;ALX4:-0.420401669375;HOX{A5,B5}:-0.422749558601;MYFfamily:-0.423453957853;GTF2I:-0.432466663175;MZF1:-0.449215057324;ELF1,2,4:-0.453269034359;AR:-0.462471596571;TP53:-0.480206972056;TAL1_TCF{3,4,12}:-0.481570914614;GFI1:-0.491731139872;POU2F1..3:-0.49224242729;XBP1:-0.533045463838;MTF1:-0.536063302386;ZBTB6:-0.544080305271;HIF1A:-0.546228331076;MAFB:-0.554877447781;PAX6:-0.556487060102;DMAP1_NCOR{1,2}_SMARC:-0.564879840827;TGIF1:-0.568290286994;HSF1,2:-0.622670264448;SPI1:-0.624980563861;FOXO1,3,4:-0.639419417354;REST:-0.639510263124;NANOG{mouse}:-0.656984980102;TFCP2:-0.664053537358;HBP1_HMGB_SSRP1_UBTF:-0.668852487771;SPIB:-0.678646148543;PPARG:-0.69114009594;RXRA_VDR{dimer}:-0.694807227587;NR3C1:-0.705982939211;KLF4:-0.715446682305;FOXM1:-0.733337191141;RUNX1..3:-0.748189581094;ESR1:-0.762086840558;CREB1:-0.77264805085;ETS1,2:-0.792052672555;ARID5B:-0.793448597875;ZIC1..3:-0.815885506233;SPZ1:-0.838544328268;ATF6:-0.880169983043;TFAP4:-0.887130768549;NFE2L1:-0.900093414758;ZNF423:-0.947378116655;ALX1:-1.03042557965;NKX2-2,8:-1.1124202121;PAX3,7:-1.13740652235;SMAD1..7,9:-1.20469232486;ZNF238:-1.30929113199;POU3F1..4:-1.32981390729;GCM1,2:-1.40672313649;HMX1:-1.44265031542;TLX2:-1.48144590085;GZF1:-1.50837498891;GLI1..3:-1.56360152494 | |top_motifs=HNF1A:3.68810866596;FOXQ1:2.50479712587;FOXD3:2.32699312722;ONECUT1,2:2.22184601046;ADNP_IRX_SIX_ZHX:2.00853097422;HNF4A_NR2F1,2:2.0028509829;FOXA2:1.7555617709;HOX{A6,A7,B6,B7}:1.72523561611;NR6A1:1.70665555788;AIRE:1.68106855961;NKX2-1,4:1.3937918511;T:1.37241876422;bHLH_family:1.21684780571;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.15265937972;DBP:1.1057026607;FOX{D1,D2}:1.09114724554;RORA:1.01513378726;NFE2L2:0.995691908652;CUX2:0.969203082386;POU6F1:0.954321163959;FOX{F1,F2,J1}:0.94907724752;EN1,2:0.854702615088;CEBPA,B_DDIT3:0.824771265751;STAT5{A,B}:0.802091078077;TEF:0.792641936231;ZBTB16:0.776397991976;NKX3-1:0.732720695823;CDX1,2,4:0.666859157585;PAX8:0.63671778062;PITX1..3:0.623502391548;ZEB1:0.62198562414;SOX2:0.609594289166;GATA6:0.604668073201;ELK1,4_GABP{A,B1}:0.601308954158;CRX:0.600618482819;ZNF143:0.584002621348;FOXP1:0.564696350041;RBPJ:0.561799743225;NKX3-2:0.559577682266;MYOD1:0.55728653626;SOX5:0.556127547521;NFY{A,B,C}:0.529035479456;HOX{A4,D4}:0.524711572098;FOX{I1,J2}:0.516745519107;TFAP2B:0.490457297065;HMGA1,2:0.488576987653;PBX1:0.476136713615;TFDP1:0.468782078554;EBF1:0.468619994676;PAX1,9:0.460111910273;EVI1:0.456996983344;TLX1..3_NFIC{dimer}:0.451767911007;LHX3,4:0.441091825545;RFX1:0.43449228103;E2F1..5:0.433270695952;HIC1:0.430179630745;NFE2:0.426918909814;NR1H4:0.422559740824;BPTF:0.390925991804;NKX6-1,2:0.383988978043;MED-1{core}:0.383826869549;ATF2:0.350591138925;YY1:0.345063449077;RXR{A,B,G}:0.340607823164;ZFP161:0.328088217275;ESRRA:0.309998117102;SNAI1..3:0.302287857952;NKX2-3_NKX2-5:0.298635565518;RFX2..5_RFXANK_RFXAP:0.277687525988;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.276939611743;HOXA9_MEIS1:0.269927412977;ATF4:0.263761321943;EP300:0.245840226007;OCT4_SOX2{dimer}:0.227934745231;BREu{core}:0.226535949889;STAT1,3:0.222428699369;IKZF2:0.217282747826;STAT2,4,6:0.213151271482;PDX1:0.209355173672;FOXL1:0.203196917986;AHR_ARNT_ARNT2:0.191817878366;TBP:0.176110105208;PATZ1:0.174490877854;MTE{core}:0.162839017364;IRF7:0.149943407504;MYB:0.137889134099;VSX1,2:0.136989306161;POU5F1:0.106758676688;SOX{8,9,10}:0.0893849395567;GFI1B:0.0651055612608;FOXN1:0.0626610073406;FOXP3:0.0574483536236;POU1F1:0.056616586565;EGR1..3:0.053943643145;NFIL3:0.0308014502709;TFAP2{A,C}:0.0279340810417;TEAD1:0.0183166659152;HAND1,2:-0.0115941272542;MEF2{A,B,C,D}:-0.0438306191817;CDC5L:-0.0460415151232;FOSL2:-0.049069155126;HES1:-0.0618051377042;LMO2:-0.0636065258741;PAX5:-0.0771020307972;NR5A1,2:-0.0787114045118;IKZF1:-0.0909366643272;IRF1,2:-0.0976633880526;NFIX:-0.0992032652253;HLF:-0.120358880744;SREBF1,2:-0.12358381392;NHLH1,2:-0.130199960619;PRRX1,2:-0.148820793656;MAZ:-0.174696359132;NRF1:-0.176055549465;ATF5_CREB3:-0.177864153207;UFEwm:-0.188387333891;SP1:-0.192237197291;NFKB1_REL_RELA:-0.194420453114;LEF1_TCF7_TCF7L1,2:-0.202284195576;FOS_FOS{B,L1}_JUN{B,D}:-0.227273525939;BACH2:-0.23098474345;GATA4:-0.236058786044;PAX4:-0.23669182347;SOX17:-0.23902886034;PRDM1:-0.272615062497;TBX4,5:-0.276484910769;ZNF384:-0.295976053669;NANOG:-0.305426916349;RREB1:-0.306895424602;TOPORS:-0.327128554861;XCPE1{core}:-0.327690144765;NFATC1..3:-0.331199736711;SRF:-0.332759821082;ZNF148:-0.353376468178;MYBL2:-0.368672438789;JUN:-0.376356026453;PAX2:-0.40020362717;GTF2A1,2:-0.402990871216;ALX4:-0.420401669375;HOX{A5,B5}:-0.422749558601;MYFfamily:-0.423453957853;GTF2I:-0.432466663175;MZF1:-0.449215057324;ELF1,2,4:-0.453269034359;AR:-0.462471596571;TP53:-0.480206972056;TAL1_TCF{3,4,12}:-0.481570914614;GFI1:-0.491731139872;POU2F1..3:-0.49224242729;XBP1:-0.533045463838;MTF1:-0.536063302386;ZBTB6:-0.544080305271;HIF1A:-0.546228331076;MAFB:-0.554877447781;PAX6:-0.556487060102;DMAP1_NCOR{1,2}_SMARC:-0.564879840827;TGIF1:-0.568290286994;HSF1,2:-0.622670264448;SPI1:-0.624980563861;FOXO1,3,4:-0.639419417354;REST:-0.639510263124;NANOG{mouse}:-0.656984980102;TFCP2:-0.664053537358;HBP1_HMGB_SSRP1_UBTF:-0.668852487771;SPIB:-0.678646148543;PPARG:-0.69114009594;RXRA_VDR{dimer}:-0.694807227587;NR3C1:-0.705982939211;KLF4:-0.715446682305;FOXM1:-0.733337191141;RUNX1..3:-0.748189581094;ESR1:-0.762086840558;CREB1:-0.77264805085;ETS1,2:-0.792052672555;ARID5B:-0.793448597875;ZIC1..3:-0.815885506233;SPZ1:-0.838544328268;ATF6:-0.880169983043;TFAP4:-0.887130768549;NFE2L1:-0.900093414758;ZNF423:-0.947378116655;ALX1:-1.03042557965;NKX2-2,8:-1.1124202121;PAX3,7:-1.13740652235;SMAD1..7,9:-1.20469232486;ZNF238:-1.30929113199;POU3F1..4:-1.32981390729;GCM1,2:-1.40672313649;HMX1:-1.44265031542;TLX2:-1.48144590085;GZF1:-1.50837498891;GLI1..3:-1.56360152494 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10484-107A7;search_select_hide=table117:FF:10484-107A7 | |||
}} | }} | ||
Latest revision as of 14:26, 3 June 2020
| Name: | hepatoma cell line:Li-7 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11271 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11271
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11271
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.564 |
| 10 | 10 | 0.55 |
| 100 | 100 | 0.0805 |
| 101 | 101 | 0.131 |
| 102 | 102 | 0.0628 |
| 103 | 103 | 0.34 |
| 104 | 104 | 0.513 |
| 105 | 105 | 0.662 |
| 106 | 106 | 0.922 |
| 107 | 107 | 0.418 |
| 108 | 108 | 0.564 |
| 109 | 109 | 0.0711 |
| 11 | 11 | 0.0121 |
| 110 | 110 | 0.156 |
| 111 | 111 | 0.477 |
| 112 | 112 | 0.375 |
| 113 | 113 | 6.95257e-4 |
| 114 | 114 | 0.234 |
| 115 | 115 | 0.598 |
| 116 | 116 | 0.246 |
| 117 | 117 | 0.118 |
| 118 | 118 | 0.278 |
| 119 | 119 | 0.965 |
| 12 | 12 | 0.172 |
| 120 | 120 | 0.721 |
| 121 | 121 | 0.0354 |
| 122 | 122 | 0.706 |
| 123 | 123 | 0.831 |
| 124 | 124 | 0.304 |
| 125 | 125 | 0.846 |
| 126 | 126 | 0.411 |
| 127 | 127 | 0.0141 |
| 128 | 128 | 0.00547 |
| 129 | 129 | 0.605 |
| 13 | 13 | 0.45 |
| 130 | 130 | 0.897 |
| 131 | 131 | 0.242 |
| 132 | 132 | 0.271 |
| 133 | 133 | 0.479 |
| 134 | 134 | 0.53 |
| 135 | 135 | 0.179 |
| 136 | 136 | 0.0825 |
| 137 | 137 | 0.195 |
| 138 | 138 | 0.879 |
| 139 | 139 | 0.513 |
| 14 | 14 | 0.512 |
| 140 | 140 | 0.313 |
| 141 | 141 | 0.149 |
| 142 | 142 | 0.89 |
| 143 | 143 | 1.42638e-4 |
| 144 | 144 | 0.769 |
| 145 | 145 | 0.514 |
| 146 | 146 | 0.573 |
| 147 | 147 | 0.223 |
| 148 | 148 | 0.346 |
| 149 | 149 | 0.605 |
| 15 | 15 | 0.493 |
| 150 | 150 | 0.839 |
| 151 | 151 | 0.608 |
| 152 | 152 | 0.809 |
| 153 | 153 | 0.111 |
| 154 | 154 | 0.41 |
| 155 | 155 | 0.542 |
| 156 | 156 | 0.389 |
| 157 | 157 | 0.305 |
| 158 | 158 | 0.256 |
| 159 | 159 | 0.836 |
| 16 | 16 | 0.286 |
| 160 | 160 | 0.055 |
| 161 | 161 | 0.849 |
| 162 | 162 | 0.973 |
| 163 | 163 | 0.21 |
| 164 | 164 | 0.921 |
| 165 | 165 | 0.749 |
| 166 | 166 | 0.348 |
| 167 | 167 | 0.36 |
| 168 | 168 | 0.4 |
| 169 | 169 | 0.0865 |
| 17 | 17 | 0.389 |
| 18 | 18 | 0.407 |
| 19 | 19 | 0.199 |
| 2 | 2 | 0.19 |
| 20 | 20 | 0.029 |
| 21 | 21 | 0.485 |
| 22 | 22 | 0.0657 |
| 23 | 23 | 0.379 |
| 24 | 24 | 0.697 |
| 25 | 25 | 0.435 |
| 26 | 26 | 0.532 |
| 27 | 27 | 0.0165 |
| 28 | 28 | 0.687 |
| 29 | 29 | 0.332 |
| 3 | 3 | 0.14 |
| 30 | 30 | 0.357 |
| 31 | 31 | 0.964 |
| 32 | 32 | 2.80139e-4 |
| 33 | 33 | 0.603 |
| 34 | 34 | 0.333 |
| 35 | 35 | 0.899 |
| 36 | 36 | 0.628 |
| 37 | 37 | 0.247 |
| 38 | 38 | 0.457 |
| 39 | 39 | 0.652 |
| 4 | 4 | 0.336 |
| 40 | 40 | 0.708 |
| 41 | 41 | 0.00385 |
| 42 | 42 | 0.353 |
| 43 | 43 | 0.123 |
| 44 | 44 | 0.974 |
| 45 | 45 | 0.832 |
| 46 | 46 | 0.476 |
| 47 | 47 | 0.418 |
| 48 | 48 | 0.214 |
| 49 | 49 | 0.32 |
| 5 | 5 | 0.476 |
| 50 | 50 | 0.977 |
| 51 | 51 | 0.0874 |
| 52 | 52 | 0.916 |
| 53 | 53 | 0.451 |
| 54 | 54 | 0.83 |
| 55 | 55 | 0.362 |
| 56 | 56 | 0.817 |
| 57 | 57 | 0.75 |
| 58 | 58 | 0.305 |
| 59 | 59 | 0.0798 |
| 6 | 6 | 0.565 |
| 60 | 60 | 0.71 |
| 61 | 61 | 0.975 |
| 62 | 62 | 0.0585 |
| 63 | 63 | 0.784 |
| 64 | 64 | 0.436 |
| 65 | 65 | 0.172 |
| 66 | 66 | 0.138 |
| 67 | 67 | 0.0162 |
| 68 | 68 | 0.172 |
| 69 | 69 | 0.757 |
| 7 | 7 | 0.304 |
| 70 | 70 | 0.397 |
| 71 | 71 | 0.161 |
| 72 | 72 | 0.277 |
| 73 | 73 | 0.621 |
| 74 | 74 | 0.579 |
| 75 | 75 | 0.819 |
| 76 | 76 | 0.727 |
| 77 | 77 | 0.568 |
| 78 | 78 | 0.128 |
| 79 | 79 | 0.00296 |
| 8 | 8 | 0.67 |
| 80 | 80 | 0.294 |
| 81 | 81 | 0.573 |
| 82 | 82 | 0.0117 |
| 83 | 83 | 0.384 |
| 84 | 84 | 0.579 |
| 85 | 85 | 0.271 |
| 86 | 86 | 0.445 |
| 87 | 87 | 0.434 |
| 88 | 88 | 0.973 |
| 89 | 89 | 0.112 |
| 9 | 9 | 0.00778 |
| 90 | 90 | 0.927 |
| 91 | 91 | 0.107 |
| 92 | 92 | 0.534 |
| 93 | 93 | 0.939 |
| 94 | 94 | 0.0834 |
| 95 | 95 | 0.324 |
| 96 | 96 | 0.326 |
| 97 | 97 | 0.867 |
| 98 | 98 | 0.247 |
| 99 | 99 | 0.626 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11271
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100578 hepatoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)
