FF:10497-107C2: Difference between revisions

Latest revision as of 14:27, 3 June 2020

Name:	endometrial carcinoma cell line:OMC-2
Species:	Human (Homo sapiens)
Library ID:	CNhs11266
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	endometrium
dev stage	NA
sex	female
age	59
cell type	unclassifiable
cell line	OMC-2
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005280

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11266		CAGE		DRX007876		DRR008748

Accession ID Hg19

Library id		BAM		CTSS
CNhs11266		DRZ000173		DRZ001558

Accession ID Hg38

Library id		BAM		CTSS
CNhs11266		DRZ011523		DRZ012908

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.109
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.177
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0159
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.221
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.109
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0559
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0775
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.245
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.419
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0315
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.139
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0185
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11266

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0354
MA0003.1	MA0003.1	0.894
MA0004.1	MA0004.1	0.247
MA0006.1	MA0006.1	0.59
MA0007.1	MA0007.1	0.42
MA0009.1	MA0009.1	0.455
MA0014.1	MA0014.1	0.271
MA0017.1	MA0017.1	0.0156
MA0018.2	MA0018.2	0.0145
MA0019.1	MA0019.1	0.998
MA0024.1	MA0024.1	0.18
MA0025.1	MA0025.1	0.159
MA0027.1	MA0027.1	0.895
MA0028.1	MA0028.1	7.06449e-8
MA0029.1	MA0029.1	0.401
MA0030.1	MA0030.1	0.932
MA0031.1	MA0031.1	0.857
MA0035.2	MA0035.2	0.445
MA0038.1	MA0038.1	0.00183
MA0039.2	MA0039.2	0.00629
MA0040.1	MA0040.1	0.608
MA0041.1	MA0041.1	0.268
MA0042.1	MA0042.1	0.089
MA0043.1	MA0043.1	0.418
MA0046.1	MA0046.1	1.79216e-22
MA0047.2	MA0047.2	0.889
MA0048.1	MA0048.1	0.496
MA0050.1	MA0050.1	0.405
MA0051.1	MA0051.1	0.0214
MA0052.1	MA0052.1	2.57389e-4
MA0055.1	MA0055.1	0.00988
MA0057.1	MA0057.1	0.87
MA0058.1	MA0058.1	0.04
MA0059.1	MA0059.1	0.00255
MA0060.1	MA0060.1	6.59794e-5
MA0061.1	MA0061.1	0.544
MA0062.2	MA0062.2	1.31194e-7
MA0065.2	MA0065.2	1.50982e-5
MA0066.1	MA0066.1	0.619
MA0067.1	MA0067.1	0.03
MA0068.1	MA0068.1	0.288
MA0069.1	MA0069.1	0.84
MA0070.1	MA0070.1	0.521
MA0071.1	MA0071.1	0.417
MA0072.1	MA0072.1	0.854
MA0073.1	MA0073.1	0.74
MA0074.1	MA0074.1	0.637
MA0076.1	MA0076.1	6.97788e-9
MA0077.1	MA0077.1	0.146
MA0078.1	MA0078.1	0.392
MA0079.2	MA0079.2	0.525
MA0080.2	MA0080.2	1.41494e-6
MA0081.1	MA0081.1	0.0583
MA0083.1	MA0083.1	0.533
MA0084.1	MA0084.1	0.0379
MA0087.1	MA0087.1	0.737
MA0088.1	MA0088.1	0.145
MA0090.1	MA0090.1	0.875
MA0091.1	MA0091.1	0.00732
MA0092.1	MA0092.1	0.581
MA0093.1	MA0093.1	0.119
MA0099.2	MA0099.2	0.98
MA0100.1	MA0100.1	0.266
MA0101.1	MA0101.1	0.273
MA0102.2	MA0102.2	0.665
MA0103.1	MA0103.1	1.23189e-7
MA0104.2	MA0104.2	0.138
MA0105.1	MA0105.1	0.0445
MA0106.1	MA0106.1	0.54
MA0107.1	MA0107.1	0.36
MA0108.2	MA0108.2	2.62217e-6
MA0111.1	MA0111.1	0.922
MA0112.2	MA0112.2	0.159
MA0113.1	MA0113.1	0.239
MA0114.1	MA0114.1	6.96878e-5
MA0115.1	MA0115.1	0.0017
MA0116.1	MA0116.1	0.918
MA0117.1	MA0117.1	0.0705
MA0119.1	MA0119.1	0.296
MA0122.1	MA0122.1	0.259
MA0124.1	MA0124.1	0.48
MA0125.1	MA0125.1	0.141
MA0131.1	MA0131.1	0.243
MA0135.1	MA0135.1	0.0469
MA0136.1	MA0136.1	0.0136
MA0137.2	MA0137.2	0.339
MA0138.2	MA0138.2	0.259
MA0139.1	MA0139.1	0.185
MA0140.1	MA0140.1	0.212
MA0141.1	MA0141.1	0.862
MA0142.1	MA0142.1	0.183
MA0143.1	MA0143.1	0.54
MA0144.1	MA0144.1	0.867
MA0145.1	MA0145.1	0.0442
MA0146.1	MA0146.1	0.0771
MA0147.1	MA0147.1	0.0784
MA0148.1	MA0148.1	0.651
MA0149.1	MA0149.1	0.73
MA0150.1	MA0150.1	0.399
MA0152.1	MA0152.1	0.495
MA0153.1	MA0153.1	3.14106e-20
MA0154.1	MA0154.1	0.381
MA0155.1	MA0155.1	0.554
MA0156.1	MA0156.1	0.933
MA0157.1	MA0157.1	0.872
MA0159.1	MA0159.1	0.0128
MA0160.1	MA0160.1	0.548
MA0162.1	MA0162.1	0.771
MA0163.1	MA0163.1	0.747
MA0164.1	MA0164.1	0.15
MA0258.1	MA0258.1	0.215
MA0259.1	MA0259.1	0.583

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11266

Novel motif	Logo	P-value
1	1	0.289
10	10	0.948
100	100	0.103
101	101	0.393
102	102	0.397
103	103	0.622
104	104	0.77
105	105	0.363
106	106	0.982
107	107	0.439
108	108	0.934
109	109	0.298
11	11	0.996
110	110	0.233
111	111	0.186
112	112	0.844
113	113	0.256
114	114	0.93
115	115	0.0652
116	116	0.512
117	117	0.011
118	118	0.772
119	119	0.875
12	12	0.244
120	120	0.249
121	121	0.617
122	122	0.312
123	123	0.751
124	124	0.485
125	125	0.169
126	126	0.635
127	127	0.221
128	128	0.258
129	129	0.228
13	13	0.0056
130	130	0.852
131	131	0.509
132	132	0.539
133	133	0.0125
134	134	0.198
135	135	0.00522
136	136	0.07
137	137	0.125
138	138	0.457
139	139	0.514
14	14	0.985
140	140	0.0998
141	141	0.274
142	142	0.915
143	143	0.00132
144	144	0.382
145	145	0.748
146	146	0.777
147	147	0.216
148	148	0.735
149	149	0.339
15	15	0.904
150	150	0.572
151	151	0.992
152	152	0.169
153	153	0.277
154	154	0.0975
155	155	0.915
156	156	0.796
157	157	0.487
158	158	0.651
159	159	0.318
16	16	0.631
160	160	0.402
161	161	0.338
162	162	0.871
163	163	0.996
164	164	0.154
165	165	0.475
166	166	0.693
167	167	0.87
168	168	0.462
169	169	0.0705
17	17	0.448
18	18	0.29
19	19	0.92
2	2	0.367
20	20	0.158
21	21	0.877
22	22	0.967
23	23	0.532
24	24	0.271
25	25	0.491
26	26	0.931
27	27	0.351
28	28	0.297
29	29	0.887
3	3	0.567
30	30	0.172
31	31	0.896
32	32	0.0807
33	33	0.227
34	34	0.883
35	35	0.971
36	36	0.489
37	37	0.137
38	38	0.582
39	39	0.84
4	4	0.995
40	40	0.383
41	41	0.00161
42	42	0.56
43	43	0.996
44	44	0.727
45	45	0.243
46	46	0.995
47	47	0.258
48	48	0.512
49	49	0.779
5	5	0.824
50	50	0.203
51	51	0.803
52	52	0.645
53	53	0.828
54	54	0.886
55	55	0.928
56	56	0.526
57	57	0.324
58	58	0.589
59	59	0.542
6	6	0.764
60	60	0.458
61	61	0.0411
62	62	0.236
63	63	0.453
64	64	0.966
65	65	0.69
66	66	0.263
67	67	0.403
68	68	0.043
69	69	0.395
7	7	0.781
70	70	0.851
71	71	0.183
72	72	0.912
73	73	0.46
74	74	0.148
75	75	0.0347
76	76	0.88
77	77	0.196
78	78	0.776
79	79	0.00252
8	8	0.505
80	80	0.229
81	81	0.0346
82	82	0.201
83	83	0.334
84	84	0.274
85	85	0.259
86	86	0.471
87	87	0.0192
88	88	0.0352
89	89	0.62
9	9	0.403
90	90	0.178
91	91	0.268
92	92	0.783
93	93	0.58
94	94	0.136
95	95	0.172
96	96	0.23
97	97	0.765
98	98	0.849
99	99	0.85

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11266

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100167 adenocarcinoma cell line sample
FF:0101555 endometrial cancer cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002149 (epithelial cell of uterus)
0002255 (stromal cell of endometrium)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
299 (adenocarcinoma)
3001 (female reproductive endometrioid cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0101555 (endometrial cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005280
-|accession_numbers=CAGE;DRX007876;DRR008748;DRZ000173;DRZ001558
+|accession_numbers=CAGE;DRX007876;DRR008748;DRZ000173;DRZ001558;DRZ011523;DRZ012908
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:66218255..66218304,+!p3@HMGA2!2.18!389.35!HMGA2;;chr2:114036488..114036504,-!p1@PAX8!1.99!96.77!PAX8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.82!65.18!POU3F3;;chr17:46675558..46675577,-!p2@HOXB6!1.80!62.33!HOXB6;;chr17:48072574..48072597,-!p1@DLX3!1.76!56.35!DLX3;;chr1:201979743..201979762,+!p1@ELF3!1.74!54.36!ELF3;;chr6:10415484..10415508,-!p3@TFAP2A!1.72!51.23!TFAP2A;;chr11:34642612..34642646,+!p1@EHF!1.68!46.68!EHF;;chr7:27192185..27192209,-!p1@HOXA3!1.64!42.41!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!1.62!40.98!HOXA9;;chr12:66218212..66218244,+!p5@HMGA2!1.60!55.50!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!1.60!38.99!HOXA9;;chr17:46622205..46622218,-!p3@HOXB2!1.58!42.12!HOXB2;;chr17:36105042..36105060,-!p1@HNF1B!1.57!36.15!HNF1B;;chr12:66218378..66218401,+!p6@HMGA2!1.56!53.51!HMGA2;;chr12:26277956..26277980,-!p1@BHLHE41!1.55!118.97!BHLHE41;;chr12:26277817..26277863,-!p2@BHLHE41!1.55!45.82!BHLHE41;;chr6:126240442..126240459,+!p4@NCOA7!1.55!43.26!NCOA7;;chr7:27153454..27153469,-!p2@HOXA3!1.54!33.87!HOXA3;;chr12:66218183..66218209,+!p4@HMGA2!1.51!58.91!HMGA2;;chr17:46703687..46703740,-!p1@HOXB9!1.45!27.32!HOXB9;;chr12:66218836..66218888,+!p1@HMGA2!1.44!237.36!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!1.41!31.31!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.37!27.61!TFAP2A;;chr7:27196217..27196246,-!p2@HOXA7!1.37!22.48!HOXA7;;chr3:12330560..12330579,+!p1@PPARG!1.36!25.05!PPARG;;chr1:201979703..201979721,+!p2@ELF3!1.35!21.35!ELF3;;chr17:46667594..46667619,-!p1@HOXB3!1.34!21.06!HOXB3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!20.78!ZBED1;;chr6:126240380..126240430,+!p2@NCOA7!1.33!51.51!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.58!TFAP2A;;chr12:26278008..26278024,-!p4@BHLHE41!1.33!24.48!BHLHE41;;chr7:63505799..63505904,+!p1@ZNF727!1.33!20.49!ZNF727;;chr12:27485785..27485816,+!p1@ARNTL2!1.31!130.64!ARNTL2;;chr18:55102628..55102646,+!p2@ONECUT2!1.31!19.64!ONECUT2;;chr12:66218420..66218439,+!p12@HMGA2!1.31!19.35!HMGA2;;chr9:100615499..100615519,+!p1@FOXE1!1.31!19.35!FOXE1;;chr12:66218598..66218645,+!p2@HMGA2!1.28!82.54!HMGA2;;chr12:26278030..26278039,-!p7@BHLHE41!1.26!17.08!BHLHE41;;chr6:19837592..19837621,+!p1@ID4!1.24!99.33!ID4;;chr2:46524897..46524911,+!p2@EPAS1!1.24!44.97!EPAS1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.21!15.37!POU3F3;;chr14:29234581..29234601,+!p2@FOXG1!1.21!15.37!FOXG1;;chr7:113726357..113726443,+!p1@FOXP2!1.19!25.05!FOXP2;;chr7:28610099..28610113,+!p5@CREB5!1.18!14.23!CREB5;;chr18:55102598..55102623,+!p1@ONECUT2!1.18!14.23!ONECUT2;;chr13:100634031..100634045,+!p1@ZIC2!1.17!13.66!ZIC2;;chr7:26191809..26191890,+!p1@NFE2L3!1.16!66.03!NFE2L3;;chr8:77593474..77593612,+!p1@ZFHX4!1.16!57.21!ZFHX4;;chr12:27485762..27485776,+!p3@ARNTL2!1.16!36.15!ARNTL2;;chr17:46688334..46688385,-!p1@HOXB7!1.16!19.35!HOXB7;;chr19:53496768..53496799,-!p1@ZNF702P!1.15!20.49!ZNF702P;;chr7:57509877..57509895,+!p1@ZNF716!1.15!13.09!ZNF716;;chr12:26277929..26277955,-!p3@BHLHE41!1.13!17.93!BHLHE41;;chr6:126240463..126240489,+!p6@NCOA7!1.13!13.95!NCOA7;;chr3:141747459..141747475,-!p1@TFDP2!1.11!99.61!TFDP2;;chr12:66357214..66357233,+!p13@HMGA2!1.11!11.95!HMGA2;;chr17:46675619..46675642,-!p5@HOXB6!1.11!11.95!HOXB6;;chr17:41622765..41622821,-!p2@ETV4!1.10!17.65!ETV4;;chr17:46622229..46622257,-!p6@HOXB2!1.10!13.66!HOXB2;;chr3:169381420..169381535,-!p1@MECOM!1.09!13.38!MECOM;;chr17:46622440..46622477,-!p5@HOXB2!1.09!12.81!HOXB2;;chr8:102504651..102504683,+!p1@GRHL2!1.09!11.38!GRHL2;;chr5:137804405..137804444,+!p3@EGR1!1.08!13.38!EGR1;;chr8:55370487..55370503,+!p1@SOX17!1.08!11.10!SOX17;;chr12:66218003..66218018,+!p9@HMGA2!1.07!13.09!HMGA2;;chr6:28321909..28321965,-!p3@ZNF323!1.07!10.82!ZNF323;;chr19:53758058..53758088,-!p2@ZNF677!1.05!33.87!ZNF677;;chr13:100623375..100623425,-!p1@ZIC5!1.05!10.25!ZIC5;;chr2:200322654..200322707,-!p2@SATB2!1.04!14.52!SATB2;;chr4:149363475..149363492,-!p2@NR3C2!1.04!9.96!NR3C2;;chr12:66218152..66218174,+!p10@HMGA2!1.03!10.53!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.03!9.68!FOXG1;;chr3:69915385..69915438,+!p3@MITF!1.03!9.68!MITF;;chr4:149363494..149363543,-!p1@NR3C2!1.03!9.68!NR3C2;;chr17:46671108..46671147,-!p1@HOXB5!1.03!9.68!HOXB5;;chr16:51185172..51185197,-!p1@SALL1!1.02!9.39!SALL1;;chr17:41622731..41622764,-!p5@ETV4!1.02!9.39!ETV4;;chr6:10419768..10419819,-!p6@TFAP2A!1.02!9.39!TFAP2A;;chr12:27485823..27485868,+!p2@ARNTL2!1.01!37.85!ARNTL2;;chr17:41623009..41623053,-!p4@ETV4!1.01!15.08!ETV4;;chr9:4300050..4300118,-!p1@GLIS3!1.00!59.48!GLIS3;;chr7:28448965..28448994,+!p2@CREB5!1.00!32.16!CREB5;;chr3:69788576..69788648,+!p1@MITF!0.99!48.10!MITF;;chr2:60780753..60780800,-!p1@BCL11A!0.99!43.83!BCL11A;;chr19:49864746..49864780,-!p2@TEAD2!0.97!11.67!TEAD2;;chr12:26277994..26278001,-!p6@BHLHE41!0.97!8.25!BHLHE41;;chr8:116681409..116681431,-!p2@TRPS1!0.96!23.05!TRPS1;;chr12:54447599..54447630,+!p3@HOXC4!0.95!9.68!HOXC4;;chr14:29236269..29236285,+!p3@FOXG1!0.95!7.97!FOXG1;;chr3:114343826..114343869,-!p4@ZBTB20!0.94!15.65!ZBTB20;;chr11:34642656..34642667,+!p2@EHF!0.94!7.68!EHF;;chr13:100634130..100634143,+!p3@ZIC2!0.94!7.68!ZIC2;;chr19:12348371..12348386,-!p5@ZNF44!0.94!7.68!ZNF44;;chr7:6655225..6655279,+!p1@ENST00000457543!0.93!11.38!ZNF853;;chr1:247171316..247171336,-!p3@ZNF695!0.93!11.38!ZNF695;;chr19:50169013..50169062,-!p2@IRF3!0.92!44.40!IRF3;;chr3:12329358..12329393,+!p3@PPARG!0.92!18.78!PPARG;;chr19:52391220..52391251,-!p2@ZNF577!0.92!10.53!ZNF577;;chr2:25475120..25475176,-!p2@DNMT3A!0.92!9.96!DNMT3A;;chr1:209979467..209979494,-!p1@IRF6!0.91!7.97!IRF6;;chr4:111544219..111544240,-!p1@PITX2!0.91!7.12!PITX2;;chr7:73038839..73038862,-!p1@MLXIPL!0.91!7.12!MLXIPL;;chr1:151804244..151804310,-!p1@RORC!0.89!6.83!RORC;;chr2:191878874..191878938,-!p1@STAT1!0.88!376.54!STAT1;;chr12:66218573..66218596,+!p7@HMGA2!0.88!9.96!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.88!6.55!HMGA2;;chr3:114343870..114343887,-!p9@ZBTB20!0.88!6.55!ZBTB20;;chr7:27213893..27213954,-!p1@HOXA10!0.88!6.55!HOXA10;;chr7:27219833..27219845,-!p7@HOXA10!0.88!6.55!HOXA10;;chr17:41622925..41622976,-!p3@ETV4!0.87!9.96!ETV4;;chr15:80696703..80696754,+!p1@ARNT2!0.87!8.82!ARNT2;;chr3:101568349..101568365,+!p1@NFKBIZ!0.86!347.51!NFKBIZ;;chr5:137804357..137804390,+!p4@EGR1!0.86!7.40!EGR1;;chr6:10419824..10419840,-!p9@TFAP2A!0.86!6.26!TFAP2A;;chr3:69915369..69915381,+!p4@MITF!0.86!6.26!MITF;;chr19:46800289..46800327,+!p2@HIF3A!0.86!6.26!HIF3A;;chr12:80084737..80084763,-!p3@PAWR!0.85!24.19!PAWR;;chr19:52408227..52408243,-!p2@ZNF649!0.85!14.23!ZNF649;;chr2:60780607..60780624,-!p2@BCL11A!0.84!19.07!BCL11A;;chr11:65554528..65554546,+!p1@OVOL1!0.84!5.98!OVOL1;;chr12:26277798..26277809,-!p5@BHLHE41!0.84!5.98!BHLHE41;;chr9:20621834..20621884,-!p5@MLLT3!0.84!5.98!MLLT3;;chr17:46692457..46692484,-!p2@HOXB8!0.84!5.98!HOXB8;;chr7:27196196..27196210,-!p5@HOXA7!0.84!5.98!HOXA7;;chr19:22817119..22817145,+!p1@ZNF492!0.83!9.96!ZNF492;;chr12:54785074..54785122,-!p2@ZNF385A!0.83!9.11!ZNF385A;;chr3:170076314..170076334,+!p2@SKIL!0.83!7.68!SKIL;;chr12:26276197..26276214,-!p8@BHLHE41!0.83!5.69!BHLHE41;;chr17:46622175..46622186,-!p12@HOXB2!0.83!5.69!HOXB2;;chr17:46667561..46667572,-!p4@HOXB3!0.83!5.69!HOXB3;;chr17:46675469..46675481,-!p4@HOXB6!0.83!5.69!HOXB6;;chr7:64126503..64126528,+!p1@ZNF107!0.82!42.41!ZNF107;;chr17:41623692..41623715,-!p1@ETV4!0.82!25.33!ETV4;;chr19:20188776..20188826,+!p1@ZNF90!0.82!15.94!ZNF90;;chr17:46655704..46655718,-!p2@HOXB4!0.82!8.54!HOXB4;;chr3:141747441..141747452,-!p4@TFDP2!0.82!7.97!TFDP2;;chr6:10412392..10412409,-!p4@TFAP2A!0.82!6.55!TFAP2A;;chr19:52408257..52408278,-!p1@ZNF649!0.81!38.42!ZNF649;;chr21:44441260..44441273,+!p3@PKNOX1!0.81!5.41!PKNOX1;;chr3:101575889..101575903,+!p3@NFKBIZ!0.81!5.41!NFKBIZ;;chr5:124082322..124082364,-!p1@ZNF608!0.80!14.52!ZNF608;;chr2:200323414..200323455,-!p1@SATB2!0.80!11.95!SATB2;;chr3:101546827..101546847,+!p2@NFKBIZ!0.80!7.68!NFKBIZ;;chr17:46675420..46675465,-!p3@HOXB6!0.80!6.26!HOXB6;;chr19:36706055..36706074,+!p3@ZNF146!0.79!26.18!ZNF146;;chr14:21994337..21994442,-!p1@SALL2!0.79!15.08!SALL2;;chr12:66218469..66218477,+!p16@HMGA2!0.79!5.12!HMGA2;;chr6:28321971..28321995,-!p1@ZNF323!0.79!5.12!ZNF323;;chr8:102504690..102504704,+!p3@GRHL2!0.79!5.12!GRHL2;;chr9:14314131..14314147,-!p2@NFIB!0.78!30.17!NFIB;;chr19:53636125..53636178,-!p1@ZNF415!0.78!15.37!ZNF415;;chr16:30537839..30537929,-!p1@ZNF768!0.77!33.87!ZNF768;;chr19:2867325..2867348,+!p1@ZNF556!0.77!4.84!ZNF556;;chr2:25475094..25475112,-!p3@DNMT3A!0.77!4.84!DNMT3A;;chr3:168865250..168865272,-!p5@MECOM!0.77!4.84!MECOM;;chr19:45971246..45971265,+!p1@FOSB!0.76!97.34!FOSB;;chr19:52391147..52391218,-!p1@ZNF577!0.76!16.22!ZNF577;;chr7:27135591..27135658,-!p1@HOXA1!0.76!9.68!HOXA1;;chr19:33865009..33865090,+!p3@CEBPG!0.76!6.55!CEBPG;;chr7:102985160..102985273,-!p1@DNAJC2!0.75!127.22!DNAJC2;;chr13:73633131..73633149,+!p1@KLF5!0.75!55.21!KLF5;;chr19:52901094..52901134,+!p1@ZNF528!0.75!34.15!ZNF528;;chr17:41277372..41277418,-!p1@BRCA1!0.75!18.22!BRCA1;;chr10:104155659..104155676,+!p4@NFKB2!0.75!5.98!NFKB2;;chr2:191878812..191878823,-!p2@STAT1!0.75!5.98!STAT1;;chr5:124082279..124082319,-!p3@ZNF608!0.75!5.69!ZNF608;;chr19:22235279..22235301,+!p1@ZNF257!0.74!9.11!ZNF257;;chr20:50721803..50721857,-!p2@ZFP64!0.74!7.40!ZFP64;;chr15:67458491..67458505,+!p18@SMAD3!0.74!4.55!SMAD3;;chr17:46688310..46688323,-!p4@HOXB7!0.74!4.55!HOXB7;;chr17:46692318..46692362,-!p5@HOXB8!0.74!4.55!HOXB8;;chr17:46703826..46703845,-!p3@HOXB9!0.74!4.55!HOXB9;;chr17:74137321..74137337,-!p1@FOXJ1!0.74!4.55!FOXJ1;;chr19:37464453..37464515,+!p4@ZNF568!0.74!4.55!ZNF568;;chr7:101917407..101917443,+!p3@CUX1!0.74!4.55!CUX1;;chr7:27196267..27196311,-!p1@HOXA7!0.74!4.55!HOXA7;;chr8:76319876..76319926,+!p1@HNF4G!0.74!4.55!HNF4G;;chr11:65554563..65554576,+!p2@OVOL1!0.74!4.55!OVOL1;;chr14:37051798..37051831,-!p1@NKX2-8!0.74!4.55!NKX2-8;;chr4:87927888..87927912,+!p18@AFF1!0.74!4.55!AFF1;;chr2:231084639..231084654,-!p2@SP110!0.73!7.68!SP110;;chr19:53400852..53400962,-!p1@ZNF320!0.72!47.53!ZNF320;;chr7:28725740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280B!0.33!1.14!ZNF280B;;chr2:176969228..176969260,+!p1@HOXD11!0.33!1.14!HOXD11;;chr2:177053386..177053402,+!p1@HOXD1!0.33!1.14!HOXD1;;chr2:42721205..42721307,+!p4@MTA3!0.33!1.14!MTA3;;chr2:46612891..46612907,+!p10@EPAS1!0.33!1.14!EPAS1;;chr3:168865364..168865376,-!p11@MECOM!0.33!1.14!MECOM;;chr3:169381183..169381205,-!p4@MECOM!0.33!1.14!MECOM;;chr3:69812745..69812760,+!p10@MITF!0.33!1.14!MITF;;chr4:87857538..87857549,+!p19@AFF1!0.33!1.14!AFF1;;chr15:60296504..60296518,+!p3@FOXB1!0.33!1.14!FOXB1;;chr17:46622143..46622152,-!p14@HOXB2!0.33!1.14!HOXB2;;chr17:46671154..46671167,-!p4@HOXB5!0.33!1.14!HOXB5;;chr17:46671504..46671541,-!p2@HOXB5!0.33!1.14!HOXB5;;chr17:46692287..46692317,-!p7@HOXB8!0.33!1.14!HOXB8;;chr17:48046642..48046667,+!p3@DLX4!0.33!1.14!DLX4;;chr18:3447536..3447542,+!p23@TGIF1!0.33!1.14!TGIF1;;chr9:14314476..14314487,-!p9@NFIB!0.33!1.14!NFIB;;chr9:14083091..14083096,-!p12@NFIB!0.33!1.14!NFIB;;chr9:22446814..22446830,+!p4@DMRTA1!0.33!1.14!DMRTA1;;chr5:124082548..124082571,-!p9@ZNF608!0.33!1.14!ZNF608;;chr5:137800912..137800941,+!p7@EGR1!0.33!1.14!EGR1;;chr7:27224842..27224872,-!p1@HOXA11!0.33!1.14!HOXA11;;chr7:27239740..27239759,-!p2@HOXA13!0.33!1.14!HOXA13;;chr7:27903656..27903678,-!p11@JAZF1!0.33!1.14!JAZF1;;chr7:96635178..96635181,+!p1@DLX6!0.33!1.14!DLX6;;chr8:77595678..77595688,+!p9@ZFHX4!0.33!1.14!ZFHX4;;chr19:38183138..38183157,-!p2@ZNF781!0.33!1.14!ZNF781;;chr19:46367576..46367592,+!p1@FOXA3!0.33!1.14!FOXA3;;chr1:161736032..161736035,+!p6@ATF6!0.33!1.14!ATF6;;chr1:164528866..164528877,+!p12@PBX1!0.33!1.14!PBX1;;chr20:45087928..45087965,-!p1@ENST00000400371,p1@uc002xry.2!0.33!1.14!ZNF663;;chr21:38071462..38071474,+!p3@SIM2!0.33!1.14!SIM2;;chr11:65668011..65668020,-!p3@FOSL1!0.33!1.14!FOSL1;;chr12:54378923..54378966,+!p1@HOXC10!0.33!1.14!HOXC10;;chr12:57917037..57917052,+!p9@MBD6!0.33!1.14!MBD6;;chr13:73636621..73636647,+!p4@KLF5!0.33!1.14!KLF5;;chr13:79177703..79177729,-!p2@POU4F1!0.33!1.14!POU4F1;;chr14:37051600..37051611,-!p2@NKX2-8!0.33!1.14!NKX2-8;;chr1:202777535..202777556,-!p1@KDM5B!0.32!63.18!KDM5B;;chr17:17740287..17740307,-!p1@SREBF1!0.32!48.95!SREBF1;;chr2:113012592..113012671,-!p1@ZC3H8!0.32!31.59!ZC3H8;;chr22:38598086..38598105,+!p1@MAFF!0.32!19.64!MAFF;;chr2:42795745..42795824,+!p1@MTA3!0.32!17.08!MTA3;;chr6:41514305..41514359,+!p2@FOXP4!0.32!15.37!FOXP4;;chr6:21597765..21597779,+!p2@SOX4!0.32!14.80!SOX4;;chr19:58790314..58790358,+!p1@ZNF8!0.32!13.95!ZNF8;;chr19:50529247..50529296,+!p1@ZNF473!0.32!11.67!ZNF473;;chr7:5085480..5085510,+!p1@RBAK!0.32!7.97!RBAK;;chr19:58331073..58331084,+!p3@ZNF587!0.32!6.55!ZNF587;;chr19:44455368..44455396,+!p1@ZNF221!0.32!5.69!ZNF221;;chr7:148581327..148581347,-!p2@EZH2!0.32!5.69!EZH2;;chr1:8763463..8763499,-!p6@RERE!0.32!4.55!RERE;;chr12:122516626..122516645,+!p2@MLXIP!0.32!4.55!MLXIP;;chr5:178450797..178450814,+!p1@ZNF879!0.32!4.27!ZNF879;;chr3:44754126..44754171,+!p1@ZNF502!0.32!3.98!ZNF502;;chr20:48807091..48807123,+!p7@CEBPB!0.32!3.42!CEBPB;;chr3:40547505..40547545,+!p2@ZNF620!0.32!2.28!ZNF620;;chr4:87928085..87928097,+!p17@AFF1!0.32!1.71!AFF1;;chr2:46524865..46524870,+!p9@EPAS1!0.32!1.42!EPAS1;;chr22:29196547..29196563,-!p2@XBP1!0.31!67.45!XBP1;;chr3:193853927..193853944,+!p1@HES1!0.31!60.62!HES1;;chr14:100705458..100705529,+!p1@YY1!0.31!56.35!YY1;;chr19:19516561..19516644,+!p1@GATAD2A!0.31!38.71!GATAD2A;;chr14:45722360..45722415,-!p1@MIS18BP1!0.31!28.18!MIS18BP1;;chr19:36705998..36706021,+!p2@ZNF146!0.31!26.47!ZNF146;;chr19:53935221..53935258,+!p1@ZNF761!0.31!18.22!ZNF761;;chr8:124286495..124286548,-!p1@ZHX1!0.31!17.65!ZHX1;;chr19:12662240..12662310,-!p1@ZNF564,p1@ZNF709!0.31!13.66!ZNF564;;chr20:306177..306211,+!p2@SOX12!0.31!11.95!SOX12;;chr19:56826201..56826247,-!p1@ZSCAN5A!0.31!11.38!ZSCAN5A;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.31!11.10!SNAPC4;;chr19:21579908..21579949,+!p1@ZNF493!0.31!10.53!ZNF493;;chr7:99070499..99070523,+!p1@ZNF789!0.31!9.11!ZNF789;;chr5:133450365..133450444,+!p1@TCF7!0.31!7.68!TCF7;;chr10:43134001..43134026,-!p1@ZNF33B!0.31!7.68!ZNF33B;;chr19:53030906..53030952,+!p1@ZNF808!0.31!6.26!ZNF808;;chr4:41992565..41992580,+!p2@SLC30A9!0.31!5.98!SLC30A9;;chr19:37569314..37569381,+!p1@ZNF420!0.31!5.98!ZNF420;;chr19:37341752..37341816,+!p1@ZNF345!0.31!4.84!ZNF345;;chr15:66994663..66994680,+!p1@SMAD6!0.31!3.70!SMAD6;;chr12:133758115..133758138,+!p3@ZNF268!0.31!3.70!ZNF268;;chr1:91487836..91487854,-!p3@ZNF644!0.31!3.42!ZNF644;;chr5:150284532..150284549,-!p1@ZNF300!0.31!3.13!ZNF300;;chr1:249132608..249132628,+!p5@ZNF672!0.31!2.56!ZNF672;;chr1:40367530..40367597,-!p1@MYCL1!0.31!2.56!MYCL1;;chrX:101975619..101975641,+!p2@BHLHB9!0.31!2.56!BHLHB9;;chr3:150126101..150126118,+!p6@TSC22D2!0.31!2.28!TSC22D2;;chr3:168864315..168864339,-!p2@MECOM!0.31!2.28!MECOM;;chr6:43139248..43139261,+!p4@SRF!0.31!1.99!SRF;;chr12:51566592..51566617,-!p3@TFCP2!0.31!1.99!TFCP2;;chr3:170075103..170075114,+!p5@SKIL!0.31!1.71!SKIL;;chr11:130184623..130184634,-!p6@ZBTB44!0.31!1.42!ZBTB44;;chr8:28748157..28748175,+!p3@HMBOX1!0.31!1.42!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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrial%2520carcinoma%2520cell%2520line%253aOMC-2.CNhs11266.10497-107C2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrial%2520carcinoma%2520cell%2520line%253aOMC-2.CNhs11266.10497-107C2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrial%2520carcinoma%2520cell%2520line%253aOMC-2.CNhs11266.10497-107C2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/endometrial%2520carcinoma%2520cell%2520line%253aOMC-2.CNhs11266.10497-107C2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/endometrial%2520carcinoma%2520cell%2520line%253aOMC-2.CNhs11266.10497-107C2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10497-107C2
 |is_a=EFO:0002091;;FF:0000210;;FF:0100167;;FF:0101555
 |is_obsolete=
 |library_id=CNhs11266
-|library_id_phase_based=1:CNhs11266
+|library_id_phase_based=2:CNhs11266
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10497
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10497
 |name=endometrial carcinoma cell line:OMC-2
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11266,LSID758,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10497-107C2;search_select_hide=table117:FF:10497-107C2
 }}

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FF:10497-107C2: Difference between revisions

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Latest revision as of 14:27, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0