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{{f5samples
{{f5samples
|id=FF:10549-107H9
|DRA_sample_Accession=CAGE@SAMD00005896
|name=gastric cancer cell line:AZ521, biol_rep1
|accession_numbers=CAGE;DRX007892;DRR008764;DRZ000189;DRZ001574;DRZ011539;DRZ012924
|sample_id=10549
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
|rna_tube_id=107H9
|rna_box=107
|rna_position=H9
|sample_cell_lot=
|sample_cell_catalog=RCB2087
|sample_company=RIKEN Bioresource centre
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=stomach
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=unknown
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=2.12000
|rna_od260/280=2.05000
|sample_cell_type=unclassifiable
|sample_cell_line=AZ521
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=gastric cancer
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=87.55635
|rna_concentration=2.50161
|sample_note=
|profile_hcage=CNhs11286,LSID759,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000945,UBERON:0001007,UBERON:0001041,UBERON:0001062,UBERON:0001555,UBERON:0002050,UBERON:0002532,UBERON:0003104,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005409,UBERON:0005423,UBERON:0007026,UBERON:0009142
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3119
|ancestors_in_disease_facet=DOID:0050686,DOID:14566,DOID:162,DOID:3119,DOID:4
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100787
|sample_description=
|comment=
 
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316
|fonse_cell_line=FF:0100787
|fonse_cell_line=FF:0100787
|fonse_cell_line_closure=FF:0100787
|fonse_cell_line_closure=FF:0100787
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520cancer%2520cell%2520line%253aAZ521.CNhs11286.10549-107H9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520cancer%2520cell%2520line%253aAZ521.CNhs11286.10549-107H9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520cancer%2520cell%2520line%253aAZ521.CNhs11286.10549-107H9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520cancer%2520cell%2520line%253aAZ521.CNhs11286.10549-107H9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520cancer%2520cell%2520line%253aAZ521.CNhs11286.10549-107H9.hg38.nobarcode.ctss.bed.gz
|id=FF:10549-107H9
|is_a=EFO:0002091;;FF:0000210;;FF:0100787
|is_obsolete=
|library_id=CNhs11286
|library_id_phase_based=2:CNhs11286
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10549
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10549
|name=gastric cancer cell line:AZ521
|namespace=FANTOM5
|part_of=
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|profile_hcage=CNhs11286,LSID759,release008,COMPLETED
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=107
|rna_catalog_number=
|rna_concentration=2.50161
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.12
|rna_od260/280=2.05
|rna_position=H9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=107H9
|rna_weight_ug=87.55635
|sample_age=unknown
|sample_category=cell lines
|sample_cell_catalog=RCB2087
|sample_cell_line=AZ521
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=gastric cancer
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.45086848634819e-287!GO:0043226;organelle;4.34078670598825e-251!GO:0043227;membrane-bound organelle;4.36977356037018e-251!GO:0043231;intracellular membrane-bound organelle;9.08219825472952e-251!GO:0043229;intracellular organelle;2.88608446635787e-250!GO:0005737;cytoplasm;7.72396682241097e-173!GO:0044422;organelle part;4.04146218907207e-172!GO:0044446;intracellular organelle part;4.03175400734877e-170!GO:0044444;cytoplasmic part;1.45641868312496e-128!GO:0005634;nucleus;1.08095884268701e-124!GO:0032991;macromolecular complex;7.79383827575589e-118!GO:0044238;primary metabolic process;6.59186872034744e-114!GO:0044237;cellular metabolic process;7.90454788887367e-113!GO:0043170;macromolecule metabolic process;7.02978757646833e-108!GO:0030529;ribonucleoprotein complex;2.09843802030577e-100!GO:0044428;nuclear part;4.22843086017076e-97!GO:0003723;RNA binding;4.44360865751379e-94!GO:0043233;organelle lumen;6.22074045344574e-93!GO:0031974;membrane-enclosed lumen;6.22074045344574e-93!GO:0005739;mitochondrion;3.157722154746e-79!GO:0043283;biopolymer metabolic process;1.69511461855836e-70!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.14336411626783e-68!GO:0005515;protein binding;6.72260322649937e-65!GO:0010467;gene expression;2.63013949039606e-64!GO:0006396;RNA processing;1.17885747243731e-62!GO:0031981;nuclear lumen;1.0373174986737e-59!GO:0043234;protein complex;1.27491517800931e-59!GO:0016043;cellular component organization and biogenesis;1.01845126699884e-57!GO:0005840;ribosome;7.67185075763904e-57!GO:0006412;translation;2.29743297379669e-54!GO:0044429;mitochondrial part;2.83104172377916e-52!GO:0006259;DNA metabolic process;8.57246016248843e-51!GO:0031090;organelle membrane;3.45551567507018e-49!GO:0003676;nucleic acid binding;8.32060470084596e-49!GO:0003735;structural constituent of ribosome;1.86847365868444e-48!GO:0016071;mRNA metabolic process;6.39388775323499e-48!GO:0019538;protein metabolic process;3.69601026995993e-47!GO:0031967;organelle envelope;4.37181498156375e-47!GO:0031975;envelope;6.91576926917828e-47!GO:0033036;macromolecule localization;3.5735080487705e-46!GO:0015031;protein transport;6.74152371136418e-45!GO:0043228;non-membrane-bound organelle;1.46784415396973e-44!GO:0043232;intracellular non-membrane-bound organelle;1.46784415396973e-44!GO:0006996;organelle organization and biogenesis;1.06597601107275e-43!GO:0033279;ribosomal subunit;1.4089766642353e-43!GO:0006397;mRNA processing;2.46163200726991e-42!GO:0008380;RNA splicing;5.224169854864e-42!GO:0008104;protein localization;1.42963343097962e-41!GO:0044267;cellular protein metabolic process;7.20403007843855e-41!GO:0044249;cellular biosynthetic process;7.55218858855878e-41!GO:0044260;cellular macromolecule metabolic process;1.02893364825209e-40!GO:0045184;establishment of protein localization;7.15847633861774e-40!GO:0065003;macromolecular complex assembly;1.78946830849012e-39!GO:0046907;intracellular transport;2.68857112535224e-38!GO:0009058;biosynthetic process;2.88312011837653e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.28893052653709e-38!GO:0005654;nucleoplasm;1.07402945176451e-36!GO:0005829;cytosol;1.33767692585e-36!GO:0007049;cell cycle;2.26421604025591e-36!GO:0009059;macromolecule biosynthetic process;7.19105622420577e-35!GO:0022607;cellular component assembly;8.45231720331276e-35!GO:0016070;RNA metabolic process;1.34481190712952e-34!GO:0005740;mitochondrial envelope;1.40317287140355e-33!GO:0019866;organelle inner membrane;2.94607677750872e-33!GO:0000166;nucleotide binding;4.95010109480139e-32!GO:0006886;intracellular protein transport;1.02290422600199e-31!GO:0031966;mitochondrial membrane;2.62781152674047e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.00617251646635e-31!GO:0044451;nucleoplasm part;1.82759074506952e-30!GO:0005743;mitochondrial inner membrane;2.13570852870833e-30!GO:0005681;spliceosome;2.69845355939936e-30!GO:0006974;response to DNA damage stimulus;7.02673011022656e-30!GO:0022402;cell cycle process;3.84294143805401e-28!GO:0005694;chromosome;3.51443051923882e-27!GO:0000278;mitotic cell cycle;4.70794152362085e-27!GO:0051649;establishment of cellular localization;2.70469404028064e-26!GO:0051641;cellular localization;5.58170404992864e-26!GO:0006281;DNA repair;7.98755004342568e-26!GO:0044445;cytosolic part;2.32647821315211e-25!GO:0051276;chromosome organization and biogenesis;3.79635393344634e-24!GO:0006119;oxidative phosphorylation;8.98403125760846e-24!GO:0015935;small ribosomal subunit;3.32678002444618e-23!GO:0005730;nucleolus;7.27575543522579e-23!GO:0006457;protein folding;7.84298919422277e-23!GO:0044427;chromosomal part;9.50766105586385e-23!GO:0017111;nucleoside-triphosphatase activity;1.07573436369641e-22!GO:0016462;pyrophosphatase activity;1.35444194244329e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.49557560339349e-22!GO:0031980;mitochondrial lumen;1.57732335279283e-22!GO:0005759;mitochondrial matrix;1.57732335279283e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.61218911940601e-22!GO:0051301;cell division;1.63091985247534e-22!GO:0006512;ubiquitin cycle;5.71054447620046e-22!GO:0022403;cell cycle phase;7.22985780120608e-22!GO:0044455;mitochondrial membrane part;1.29187713513445e-21!GO:0000087;M phase of mitotic cell cycle;1.6521554938287e-21!GO:0015934;large ribosomal subunit;1.70366895606764e-21!GO:0022618;protein-RNA complex assembly;1.8890276265344e-21!GO:0016874;ligase activity;3.82965926614405e-21!GO:0007067;mitosis;4.17545703973867e-21!GO:0032553;ribonucleotide binding;4.50200187540018e-21!GO:0032555;purine ribonucleotide binding;4.50200187540018e-21!GO:0006260;DNA replication;8.78265546151085e-21!GO:0017076;purine nucleotide binding;1.33904287129072e-20!GO:0008135;translation factor activity, nucleic acid binding;4.2627478834102e-19!GO:0006325;establishment and/or maintenance of chromatin architecture;4.82666460863616e-19!GO:0005524;ATP binding;9.01410208799782e-19!GO:0000279;M phase;1.08318032810357e-18!GO:0032559;adenyl ribonucleotide binding;2.34556253069968e-18!GO:0006323;DNA packaging;2.4148439983865e-18!GO:0009719;response to endogenous stimulus;2.77571111613108e-18!GO:0005746;mitochondrial respiratory chain;4.58851084062336e-18!GO:0030554;adenyl nucleotide binding;1.12541476272863e-17!GO:0043285;biopolymer catabolic process;1.29778008946451e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.38542649206217e-17!GO:0019941;modification-dependent protein catabolic process;2.20061386698206e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.20061386698206e-17!GO:0042254;ribosome biogenesis and assembly;2.95448170022494e-17!GO:0044265;cellular macromolecule catabolic process;3.33688061952452e-17!GO:0006605;protein targeting;3.33833288739521e-17!GO:0016887;ATPase activity;4.28246060288305e-17!GO:0006511;ubiquitin-dependent protein catabolic process;4.4346486717534e-17!GO:0044257;cellular protein catabolic process;4.62610533359705e-17!GO:0031965;nuclear membrane;8.36073324007191e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.15078299214533e-16!GO:0042623;ATPase activity, coupled;1.4981489375488e-16!GO:0005761;mitochondrial ribosome;1.595230607281e-16!GO:0000313;organellar ribosome;1.595230607281e-16!GO:0044453;nuclear membrane part;3.35588262129548e-16!GO:0030163;protein catabolic process;5.07039854904371e-16!GO:0009057;macromolecule catabolic process;9.00595360262593e-16!GO:0012505;endomembrane system;1.65907519114884e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.79159664359383e-15!GO:0003954;NADH dehydrogenase activity;1.79159664359383e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.79159664359383e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.16518932626552e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;2.18747047600184e-15!GO:0000375;RNA splicing, via transesterification reactions;2.18747047600184e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.18747047600184e-15!GO:0051082;unfolded protein binding;2.42308606253572e-15!GO:0051186;cofactor metabolic process;2.51371768775458e-15!GO:0004386;helicase activity;3.73347572647573e-15!GO:0044248;cellular catabolic process;8.65569791697214e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.44748279117498e-14!GO:0008134;transcription factor binding;1.75974680491439e-14!GO:0006399;tRNA metabolic process;1.80563103570319e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.41670691706095e-14!GO:0016604;nuclear body;3.17453004900695e-14!GO:0051726;regulation of cell cycle;3.17453004900695e-14!GO:0000074;regulation of progression through cell cycle;3.45756419802647e-14!GO:0003743;translation initiation factor activity;3.45756419802647e-14!GO:0048770;pigment granule;6.4095894916728e-14!GO:0042470;melanosome;6.4095894916728e-14!GO:0043412;biopolymer modification;6.78142671008793e-14!GO:0042775;organelle ATP synthesis coupled electron transport;7.2110352941365e-14!GO:0042773;ATP synthesis coupled electron transport;7.2110352941365e-14!GO:0006413;translational initiation;7.2110352941365e-14!GO:0005635;nuclear envelope;8.91723867639133e-14!GO:0005643;nuclear pore;1.25172463856513e-13!GO:0005783;endoplasmic reticulum;1.30683450270017e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.78542994786896e-13!GO:0045271;respiratory chain complex I;1.78542994786896e-13!GO:0005747;mitochondrial respiratory chain complex I;1.78542994786896e-13!GO:0015630;microtubule cytoskeleton;2.95680516400923e-13!GO:0008026;ATP-dependent helicase activity;3.15312660451555e-13!GO:0050657;nucleic acid transport;3.37718180882991e-13!GO:0051236;establishment of RNA localization;3.37718180882991e-13!GO:0050658;RNA transport;3.37718180882991e-13!GO:0006403;RNA localization;3.79810607842482e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.25010547908278e-13!GO:0065002;intracellular protein transport across a membrane;7.83505561081761e-13!GO:0048193;Golgi vesicle transport;8.96829942686254e-13!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.40601358064187e-12!GO:0016568;chromatin modification;1.56324044609344e-12!GO:0044432;endoplasmic reticulum part;3.21562021392893e-12!GO:0016607;nuclear speck;3.96132567143543e-12!GO:0000785;chromatin;4.12566916490106e-12!GO:0006732;coenzyme metabolic process;6.41909368707753e-12!GO:0006366;transcription from RNA polymerase II promoter;1.06521235566066e-11!GO:0006364;rRNA processing;1.28972910305601e-11!GO:0006913;nucleocytoplasmic transport;1.46764593968392e-11!GO:0006333;chromatin assembly or disassembly;1.49625478460218e-11!GO:0006446;regulation of translational initiation;1.67624826799663e-11!GO:0006464;protein modification process;2.18310846650534e-11!GO:0006163;purine nucleotide metabolic process;2.24175753351068e-11!GO:0006461;protein complex assembly;2.67820483488653e-11!GO:0065004;protein-DNA complex assembly;2.72458712450431e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.78103401082016e-11!GO:0046930;pore complex;2.87675703127459e-11!GO:0051169;nuclear transport;3.07683196952415e-11!GO:0016072;rRNA metabolic process;3.46275464389943e-11!GO:0009259;ribonucleotide metabolic process;4.02083742035613e-11!GO:0051028;mRNA transport;5.22366416368939e-11!GO:0043687;post-translational protein modification;5.91523473022298e-11!GO:0016192;vesicle-mediated transport;6.00253019182851e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.39808017087093e-11!GO:0008565;protein transporter activity;1.05732432875199e-10!GO:0006164;purine nucleotide biosynthetic process;2.16112354090451e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.5623681712893e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.76231108586048e-10!GO:0004812;aminoacyl-tRNA ligase activity;2.76231108586048e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.76231108586048e-10!GO:0009150;purine ribonucleotide metabolic process;3.26460759742768e-10!GO:0043038;amino acid activation;3.31051664455214e-10!GO:0006418;tRNA aminoacylation for protein translation;3.31051664455214e-10!GO:0043039;tRNA aminoacylation;3.31051664455214e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.51009544028653e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.85534093398703e-10!GO:0008639;small protein conjugating enzyme activity;7.43626896699063e-10!GO:0003712;transcription cofactor activity;8.10707268920151e-10!GO:0006261;DNA-dependent DNA replication;1.10189754285872e-09!GO:0017038;protein import;1.11167997333716e-09!GO:0009260;ribonucleotide biosynthetic process;1.24993873584941e-09!GO:0004842;ubiquitin-protein ligase activity;1.25882054696025e-09!GO:0019787;small conjugating protein ligase activity;1.68427336255104e-09!GO:0005667;transcription factor complex;2.11165726436444e-09!GO:0019222;regulation of metabolic process;2.54740603003422e-09!GO:0016779;nucleotidyltransferase activity;3.07252337880777e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.13337935542862e-09!GO:0015986;ATP synthesis coupled proton transport;3.32866657414498e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.32866657414498e-09!GO:0051188;cofactor biosynthetic process;4.02145496306353e-09!GO:0009055;electron carrier activity;4.10585429579315e-09!GO:0005794;Golgi apparatus;4.25662265773823e-09!GO:0000775;chromosome, pericentric region;5.61152568477142e-09!GO:0009056;catabolic process;5.8344441004629e-09!GO:0005813;centrosome;6.01789787193372e-09!GO:0009199;ribonucleoside triphosphate metabolic process;6.6123685773672e-09!GO:0016881;acid-amino acid ligase activity;7.1080569948731e-09!GO:0043566;structure-specific DNA binding;7.66578374290957e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.24579374666902e-09!GO:0009141;nucleoside triphosphate metabolic process;8.37319572582603e-09!GO:0005815;microtubule organizing center;9.28215067631553e-09!GO:0051329;interphase of mitotic cell cycle;1.17739657151997e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.46167934603427e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.46167934603427e-08!GO:0046034;ATP metabolic process;1.55183772455139e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.62793794658552e-08!GO:0009060;aerobic respiration;1.67010883225363e-08!GO:0019829;cation-transporting ATPase activity;1.75612064175481e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.09672579229444e-08!GO:0005789;endoplasmic reticulum membrane;2.18795042268685e-08!GO:0003697;single-stranded DNA binding;2.23475059887342e-08!GO:0005819;spindle;2.37938956611405e-08!GO:0050794;regulation of cellular process;2.50998440941037e-08!GO:0005768;endosome;2.67397093835668e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.84989572279801e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.84989572279801e-08!GO:0006754;ATP biosynthetic process;5.01098207202857e-08!GO:0006753;nucleoside phosphate metabolic process;5.01098207202857e-08!GO:0005793;ER-Golgi intermediate compartment;5.01482270034773e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.48153136106522e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.48153136106522e-08!GO:0045333;cellular respiration;1.00118488760107e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.01679053704309e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.17533342551593e-07!GO:0032446;protein modification by small protein conjugation;1.4566619776651e-07!GO:0006752;group transfer coenzyme metabolic process;1.48058132796877e-07!GO:0051325;interphase;1.50078356648838e-07!GO:0006350;transcription;1.50078356648838e-07!GO:0006334;nucleosome assembly;1.98893322693459e-07!GO:0031323;regulation of cellular metabolic process;2.0441919855262e-07!GO:0043623;cellular protein complex assembly;2.54413241501112e-07!GO:0009108;coenzyme biosynthetic process;2.71082047302395e-07!GO:0000075;cell cycle checkpoint;3.12654884622379e-07!GO:0031497;chromatin assembly;3.48057028893995e-07!GO:0000151;ubiquitin ligase complex;3.63448485590276e-07!GO:0008094;DNA-dependent ATPase activity;3.73769503118617e-07!GO:0016567;protein ubiquitination;3.79013914617183e-07!GO:0000245;spliceosome assembly;3.93716450722303e-07!GO:0007051;spindle organization and biogenesis;4.20591942540958e-07!GO:0009117;nucleotide metabolic process;5.84205533439692e-07!GO:0045259;proton-transporting ATP synthase complex;6.102241732409e-07!GO:0006099;tricarboxylic acid cycle;6.62479744602713e-07!GO:0046356;acetyl-CoA catabolic process;6.62479744602713e-07!GO:0044440;endosomal part;6.64619157586997e-07!GO:0010008;endosome membrane;6.64619157586997e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.99752439811317e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.99752439811317e-07!GO:0003899;DNA-directed RNA polymerase activity;7.4552857442601e-07!GO:0007005;mitochondrion organization and biogenesis;1.11891407535065e-06!GO:0016740;transferase activity;1.13935538018622e-06!GO:0016564;transcription repressor activity;1.20048834399168e-06!GO:0006084;acetyl-CoA metabolic process;1.21374526604745e-06!GO:0008654;phospholipid biosynthetic process;1.23997675704891e-06!GO:0051187;cofactor catabolic process;1.42104164458241e-06!GO:0003682;chromatin binding;1.50872692800616e-06!GO:0016787;hydrolase activity;1.74213939095895e-06!GO:0005657;replication fork;1.95578765814218e-06!GO:0045786;negative regulation of progression through cell cycle;2.03776497844307e-06!GO:0009109;coenzyme catabolic process;2.35249406185196e-06!GO:0005770;late endosome;2.41383317302614e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.84135289752566e-06!GO:0012501;programmed cell death;2.95292593990312e-06!GO:0016363;nuclear matrix;3.02022905810814e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.3753782565446e-06!GO:0005762;mitochondrial large ribosomal subunit;3.55397141871315e-06!GO:0000315;organellar large ribosomal subunit;3.55397141871315e-06!GO:0006915;apoptosis;3.81304252513672e-06!GO:0003724;RNA helicase activity;4.0167783333346e-06!GO:0010468;regulation of gene expression;4.02740833226166e-06!GO:0006613;cotranslational protein targeting to membrane;4.28516662529768e-06!GO:0006302;double-strand break repair;4.28516662529768e-06!GO:0016563;transcription activator activity;4.96470829793814e-06!GO:0006606;protein import into nucleus;5.09734794341315e-06!GO:0006793;phosphorus metabolic process;5.26664693449164e-06!GO:0006796;phosphate metabolic process;5.26664693449164e-06!GO:0006310;DNA recombination;5.49082623738018e-06!GO:0031324;negative regulation of cellular metabolic process;6.3008963740394e-06!GO:0051170;nuclear import;6.58139982047875e-06!GO:0048475;coated membrane;6.87971242707029e-06!GO:0030117;membrane coat;6.87971242707029e-06!GO:0005874;microtubule;7.23066674171491e-06!GO:0005788;endoplasmic reticulum lumen;7.24466103550053e-06!GO:0030120;vesicle coat;7.24466103550053e-06!GO:0030662;coated vesicle membrane;7.24466103550053e-06!GO:0007017;microtubule-based process;7.37286867766371e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.74684164731197e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.24868104775314e-06!GO:0008033;tRNA processing;9.24868104775314e-06!GO:0008219;cell death;1.13409015260549e-05!GO:0016265;death;1.13409015260549e-05!GO:0032774;RNA biosynthetic process;1.30177050422274e-05!GO:0051427;hormone receptor binding;1.31726436289127e-05!GO:0016853;isomerase activity;1.42444110766662e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.69466028781155e-05!GO:0016859;cis-trans isomerase activity;1.71992521905373e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.73835844117606e-05!GO:0006351;transcription, DNA-dependent;1.75160978034233e-05!GO:0003684;damaged DNA binding;1.78552165776343e-05!GO:0000314;organellar small ribosomal subunit;1.95375117029306e-05!GO:0005763;mitochondrial small ribosomal subunit;1.95375117029306e-05!GO:0016741;transferase activity, transferring one-carbon groups;1.98933464704338e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;2.29942412879617e-05!GO:0016310;phosphorylation;2.32725755224301e-05!GO:0006414;translational elongation;2.34333197861244e-05!GO:0003677;DNA binding;2.49368842486314e-05!GO:0043021;ribonucleoprotein binding;2.52982293395782e-05!GO:0009892;negative regulation of metabolic process;2.61170605084162e-05!GO:0008168;methyltransferase activity;2.79505832166434e-05!GO:0050789;regulation of biological process;3.03137010294695e-05!GO:0035257;nuclear hormone receptor binding;3.03137010294695e-05!GO:0051246;regulation of protein metabolic process;3.3329181847262e-05!GO:0051168;nuclear export;3.5362110083565e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;3.92942493320371e-05!GO:0048471;perinuclear region of cytoplasm;3.98578302446113e-05!GO:0003690;double-stranded DNA binding;4.32972784441195e-05!GO:0019843;rRNA binding;4.50171745291716e-05!GO:0005798;Golgi-associated vesicle;4.57325466122457e-05!GO:0000776;kinetochore;5.28091581243188e-05!GO:0005525;GTP binding;5.55779287339214e-05!GO:0051052;regulation of DNA metabolic process;5.59140590341674e-05!GO:0044452;nucleolar part;5.64993592154243e-05!GO:0006626;protein targeting to mitochondrion;6.43699772120701e-05!GO:0003713;transcription coactivator activity;6.4745125239655e-05!GO:0016481;negative regulation of transcription;7.01211447669062e-05!GO:0007059;chromosome segregation;7.78402434598797e-05!GO:0006383;transcription from RNA polymerase III promoter;7.9311833348741e-05!GO:0003678;DNA helicase activity;8.32302533979537e-05!GO:0043681;protein import into mitochondrion;8.78997854753987e-05!GO:0005773;vacuole;8.88432969993305e-05!GO:0048523;negative regulation of cellular process;9.38186634619649e-05!GO:0003714;transcription corepressor activity;9.38724233725926e-05!GO:0005839;proteasome core complex (sensu Eukaryota);9.48811840675933e-05!GO:0007088;regulation of mitosis;0.000116655821906404!GO:0000059;protein import into nucleus, docking;0.000118625401226276!GO:0031988;membrane-bound vesicle;0.000123576411928816!GO:0005769;early endosome;0.000125003479188166!GO:0046489;phosphoinositide biosynthetic process;0.000125902102263267!GO:0003924;GTPase activity;0.000132370276691375!GO:0006352;transcription initiation;0.000138502118771715!GO:0046474;glycerophospholipid biosynthetic process;0.000140139908429991!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000143855872138912!GO:0003729;mRNA binding;0.00014852279800236!GO:0008186;RNA-dependent ATPase activity;0.000157431713358114!GO:0000786;nucleosome;0.000158869778925822!GO:0016251;general RNA polymerase II transcription factor activity;0.000160895609293496!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00016496988932912!GO:0045449;regulation of transcription;0.000172678921293704!GO:0031072;heat shock protein binding;0.00019191193721194!GO:0006612;protein targeting to membrane;0.000210448655542478!GO:0031982;vesicle;0.000219369345850988!GO:0009165;nucleotide biosynthetic process;0.000238243665086156!GO:0016023;cytoplasmic membrane-bound vesicle;0.000250174944220034!GO:0032508;DNA duplex unwinding;0.000250174944220034!GO:0032392;DNA geometric change;0.000250174944220034!GO:0006402;mRNA catabolic process;0.00025188293607679!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00025289462217104!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000280371850747121!GO:0016491;oxidoreductase activity;0.000289695280990276!GO:0007052;mitotic spindle organization and biogenesis;0.000302837758607583!GO:0000323;lytic vacuole;0.000305512926492462!GO:0005764;lysosome;0.000305512926492462!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000343867063897574!GO:0004298;threonine endopeptidase activity;0.000352210176724774!GO:0044431;Golgi apparatus part;0.000352376340366298!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000354986169551403!GO:0015399;primary active transmembrane transporter activity;0.000354986169551403!GO:0006839;mitochondrial transport;0.000356666073366354!GO:0045454;cell redox homeostasis;0.00036196569529223!GO:0015980;energy derivation by oxidation of organic compounds;0.000408305326380359!GO:0000049;tRNA binding;0.000413386697858213!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000469966222715934!GO:0004004;ATP-dependent RNA helicase activity;0.000481596351229576!GO:0031252;leading edge;0.000493464716285936!GO:0000228;nuclear chromosome;0.000498219995481987!GO:0006338;chromatin remodeling;0.000505959336853436!GO:0030867;rough endoplasmic reticulum membrane;0.000512853998140137!GO:0005637;nuclear inner membrane;0.000522217008022477!GO:0015631;tubulin binding;0.000528332992588018!GO:0005048;signal sequence binding;0.000530330244985829!GO:0006289;nucleotide-excision repair;0.000535051087277529!GO:0032561;guanyl ribonucleotide binding;0.000536804447525539!GO:0019001;guanyl nucleotide binding;0.000536804447525539!GO:0003711;transcription elongation regulator activity;0.000541303528434533!GO:0006916;anti-apoptosis;0.000543828157714202!GO:0031410;cytoplasmic vesicle;0.000566440028574794!GO:0007093;mitotic cell cycle checkpoint;0.000602603073982709!GO:0006268;DNA unwinding during replication;0.000617844316572684!GO:0007010;cytoskeleton organization and biogenesis;0.000639011320529253!GO:0000082;G1/S transition of mitotic cell cycle;0.000655793887775932!GO:0042981;regulation of apoptosis;0.000676623449012128!GO:0006091;generation of precursor metabolites and energy;0.000687059274872547!GO:0043067;regulation of programmed cell death;0.000709052615098386!GO:0048519;negative regulation of biological process;0.000729653663704384!GO:0005684;U2-dependent spliceosome;0.000804046551016213!GO:0051920;peroxiredoxin activity;0.000805909049262863!GO:0006818;hydrogen transport;0.000812559257779099!GO:0048500;signal recognition particle;0.00087380538393411!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000881453476716332!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000881453476716332!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000881453476716332!GO:0046467;membrane lipid biosynthetic process;0.000888533365048865!GO:0019899;enzyme binding;0.000904557963642661!GO:0006401;RNA catabolic process;0.0010107433637375!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00101627143587924!GO:0051789;response to protein stimulus;0.00102707010066585!GO:0006986;response to unfolded protein;0.00102707010066585!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00106535559738708!GO:0015992;proton transport;0.00109859965467796!GO:0006405;RNA export from nucleus;0.00112389731594717!GO:0006891;intra-Golgi vesicle-mediated transport;0.00119496695416443!GO:0006497;protein amino acid lipidation;0.00119602015129228!GO:0005885;Arp2/3 protein complex;0.00122932364571806!GO:0046483;heterocycle metabolic process;0.0012421765685654!GO:0006695;cholesterol biosynthetic process;0.00126240068424967!GO:0051087;chaperone binding;0.00127673675965184!GO:0042158;lipoprotein biosynthetic process;0.0013124930058506!GO:0043433;negative regulation of transcription factor activity;0.0013142660243704!GO:0051539;4 iron, 4 sulfur cluster binding;0.00132396776837381!GO:0009112;nucleobase metabolic process;0.00133342550520481!GO:0006284;base-excision repair;0.00138004375107267!GO:0033673;negative regulation of kinase activity;0.00138004375107267!GO:0006469;negative regulation of protein kinase activity;0.00138004375107267!GO:0032200;telomere organization and biogenesis;0.00146942120457713!GO:0000723;telomere maintenance;0.00146942120457713!GO:0016126;sterol biosynthetic process;0.00148420910260316!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00150115848053132!GO:0031124;mRNA 3'-end processing;0.0015019840729707!GO:0008312;7S RNA binding;0.0015101190415547!GO:0003702;RNA polymerase II transcription factor activity;0.00156046063543304!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00160944639495545!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00160944639495545!GO:0006355;regulation of transcription, DNA-dependent;0.00161613567593894!GO:0030880;RNA polymerase complex;0.00163704006976415!GO:0007050;cell cycle arrest;0.00174833201974603!GO:0008022;protein C-terminus binding;0.00181466572230532!GO:0043624;cellular protein complex disassembly;0.00181466572230532!GO:0003746;translation elongation factor activity;0.00190006533636536!GO:0000922;spindle pole;0.00191966784219719!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00191966784219719!GO:0015002;heme-copper terminal oxidase activity;0.00191966784219719!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00191966784219719!GO:0004129;cytochrome-c oxidase activity;0.00191966784219719!GO:0004518;nuclease activity;0.00203018307947312!GO:0022890;inorganic cation transmembrane transporter activity;0.00218179116310319!GO:0051348;negative regulation of transferase activity;0.0021950064129724!GO:0043069;negative regulation of programmed cell death;0.00225064368832918!GO:0045045;secretory pathway;0.00231757947435021!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00233125531686691!GO:0032984;macromolecular complex disassembly;0.00239477571221908!GO:0006144;purine base metabolic process;0.00239900418458267!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00249424799059346!GO:0045047;protein targeting to ER;0.00249424799059346!GO:0030521;androgen receptor signaling pathway;0.00252761160933924!GO:0051540;metal cluster binding;0.00253679857321148!GO:0051536;iron-sulfur cluster binding;0.00253679857321148!GO:0006506;GPI anchor biosynthetic process;0.00256851951541455!GO:0006730;one-carbon compound metabolic process;0.00257450340700707!GO:0043066;negative regulation of apoptosis;0.00264436196484424!GO:0007006;mitochondrial membrane organization and biogenesis;0.00265276731386101!GO:0016272;prefoldin complex;0.00269907877765781!GO:0033116;ER-Golgi intermediate compartment membrane;0.00272436268601838!GO:0005758;mitochondrial intermembrane space;0.00285163220856078!GO:0009451;RNA modification;0.00287962031802738!GO:0030384;phosphoinositide metabolic process;0.00296205558993004!GO:0006505;GPI anchor metabolic process;0.00312067126561995!GO:0006650;glycerophospholipid metabolic process;0.00312845065594026!GO:0006378;mRNA polyadenylation;0.00318668958014841!GO:0006611;protein export from nucleus;0.00332972827464893!GO:0043492;ATPase activity, coupled to movement of substances;0.00346682354094311!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00352755692953835!GO:0008180;signalosome;0.00352755692953835!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0035679850652816!GO:0000428;DNA-directed RNA polymerase complex;0.0035679850652816!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00366820997583194!GO:0019867;outer membrane;0.00368564585204283!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00368564585204283!GO:0031968;organelle outer membrane;0.00374070696095559!GO:0046982;protein heterodimerization activity;0.00377531875266716!GO:0005774;vacuolar membrane;0.0037982128720317!GO:0000339;RNA cap binding;0.00385380048971429!GO:0000086;G2/M transition of mitotic cell cycle;0.00395589495231465!GO:0043241;protein complex disassembly;0.00399936931645671!GO:0009303;rRNA transcription;0.00406142336436386!GO:0006275;regulation of DNA replication;0.00407229412416449!GO:0031902;late endosome membrane;0.00419684432207287!GO:0051252;regulation of RNA metabolic process;0.00421334210163497!GO:0005876;spindle microtubule;0.00428769719214225!GO:0004527;exonuclease activity;0.00436135309761285!GO:0030027;lamellipodium;0.00437167189329888!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00443247773198503!GO:0043284;biopolymer biosynthetic process;0.00454824602672739!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00462386518683768!GO:0031123;RNA 3'-end processing;0.00473714258553447!GO:0008017;microtubule binding;0.00479816438262534!GO:0042393;histone binding;0.00533368675326865!GO:0000781;chromosome, telomeric region;0.0053992707262285!GO:0048487;beta-tubulin binding;0.00566678344102955!GO:0031970;organelle envelope lumen;0.00599489084249143!GO:0043596;nuclear replication fork;0.00601696825327788!GO:0016407;acetyltransferase activity;0.00607624996790886!GO:0000725;recombinational repair;0.00609474056167111!GO:0000724;double-strand break repair via homologous recombination;0.00609474056167111!GO:0005669;transcription factor TFIID complex;0.00638067835822869!GO:0030176;integral to endoplasmic reticulum membrane;0.00643123202259448!GO:0009116;nucleoside metabolic process;0.00654276108163011!GO:0065009;regulation of a molecular function;0.00672026787790269!GO:0005905;coated pit;0.00672653132862877!GO:0030663;COPI coated vesicle membrane;0.00673727878699628!GO:0030126;COPI vesicle coat;0.00673727878699628!GO:0004003;ATP-dependent DNA helicase activity;0.00677148988045666!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00685985889857405!GO:0000910;cytokinesis;0.00710757578667039!GO:0004674;protein serine/threonine kinase activity;0.00756881916021713!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00763612319776478!GO:0000152;nuclear ubiquitin ligase complex;0.00768017155330059!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00784518741915186!GO:0042770;DNA damage response, signal transduction;0.00793617464956762!GO:0030658;transport vesicle membrane;0.00814751663044901!GO:0005741;mitochondrial outer membrane;0.00860104915038257!GO:0032259;methylation;0.00863566819206024!GO:0008276;protein methyltransferase activity;0.0086717122814649!GO:0006520;amino acid metabolic process;0.0087405654125973!GO:0000819;sister chromatid segregation;0.00877898147044812!GO:0006270;DNA replication initiation;0.00879485744488349!GO:0005832;chaperonin-containing T-complex;0.0088943662720177!GO:0007040;lysosome organization and biogenesis;0.00904914274999757!GO:0043022;ribosome binding;0.00912459704780036!GO:0044437;vacuolar part;0.0091659075058009!GO:0000096;sulfur amino acid metabolic process;0.00953347528244739!GO:0030118;clathrin coat;0.00971300976167475!GO:0035258;steroid hormone receptor binding;0.00976708624832833!GO:0007033;vacuole organization and biogenesis;0.00982237807850439!GO:0006400;tRNA modification;0.00991264312979585!GO:0045892;negative regulation of transcription, DNA-dependent;0.00991367835145133!GO:0050662;coenzyme binding;0.00998689188756463!GO:0016202;regulation of striated muscle development;0.0100262388596309!GO:0000070;mitotic sister chromatid segregation;0.0100460036428731!GO:0000139;Golgi membrane;0.0101139908840675!GO:0007004;telomere maintenance via telomerase;0.0104495853772574!GO:0000118;histone deacetylase complex;0.0105033787619464!GO:0008139;nuclear localization sequence binding;0.0105033787619464!GO:0005869;dynactin complex;0.0105160767353005!GO:0046112;nucleobase biosynthetic process;0.0107750597325951!GO:0043488;regulation of mRNA stability;0.0108784959958252!GO:0043487;regulation of RNA stability;0.0108784959958252!GO:0031570;DNA integrity checkpoint;0.0110510813992003!GO:0044450;microtubule organizing center part;0.0110739340359722!GO:0030137;COPI-coated vesicle;0.011100061405936!GO:0043130;ubiquitin binding;0.0111409260129029!GO:0032182;small conjugating protein binding;0.0111409260129029!GO:0008097;5S rRNA binding;0.0112149492999509!GO:0006672;ceramide metabolic process;0.0113306478589376!GO:0042802;identical protein binding;0.0114849041957748!GO:0005791;rough endoplasmic reticulum;0.0117369822161334!GO:0019783;small conjugating protein-specific protease activity;0.012028099635861!GO:0006367;transcription initiation from RNA polymerase II promoter;0.012028099635861!GO:0048037;cofactor binding;0.0121120602495123!GO:0006376;mRNA splice site selection;0.0123017895056037!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0123017895056037!GO:0005765;lysosomal membrane;0.012400094698532!GO:0006778;porphyrin metabolic process;0.0124375395958209!GO:0033013;tetrapyrrole metabolic process;0.0124375395958209!GO:0003756;protein disulfide isomerase activity;0.0125425745091811!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0125425745091811!GO:0030518;steroid hormone receptor signaling pathway;0.0130735498701733!GO:0016790;thiolester hydrolase activity;0.0136143714664769!GO:0006595;polyamine metabolic process;0.0136385046325053!GO:0045941;positive regulation of transcription;0.0138553957002376!GO:0046966;thyroid hormone receptor binding;0.0138553957002376!GO:0004576;oligosaccharyl transferase activity;0.0138983081166762!GO:0000178;exosome (RNase complex);0.013929246781243!GO:0005875;microtubule associated complex;0.0139460268360486!GO:0004843;ubiquitin-specific protease activity;0.0146606431750566!GO:0016585;chromatin remodeling complex;0.0147506499654961!GO:0046519;sphingoid metabolic process;0.014824731305299!GO:0030134;ER to Golgi transport vesicle;0.0148693873335642!GO:0030660;Golgi-associated vesicle membrane;0.0150354788461997!GO:0000792;heterochromatin;0.0153001684409958!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0153742651767356!GO:0043414;biopolymer methylation;0.0154042776399532!GO:0043601;nuclear replisome;0.0155047923817168!GO:0030894;replisome;0.0155047923817168!GO:0000209;protein polyubiquitination;0.0155047923817168!GO:0043189;H4/H2A histone acetyltransferase complex;0.0163036254649706!GO:0019752;carboxylic acid metabolic process;0.0163352672233903!GO:0035267;NuA4 histone acetyltransferase complex;0.0163352672233903!GO:0006740;NADPH regeneration;0.0165706608978816!GO:0006098;pentose-phosphate shunt;0.0165706608978816!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0170215291275492!GO:0008250;oligosaccharyl transferase complex;0.0173107113542475!GO:0006082;organic acid metabolic process;0.0174142027878217!GO:0044454;nuclear chromosome part;0.0174623508683194!GO:0016044;membrane organization and biogenesis;0.0174746904359804!GO:0006278;RNA-dependent DNA replication;0.0177362598766095!GO:0051098;regulation of binding;0.0178116042122863!GO:0045893;positive regulation of transcription, DNA-dependent;0.0183863795738022!GO:0043631;RNA polyadenylation;0.0184883265089694!GO:0030132;clathrin coat of coated pit;0.019006787521968!GO:0009066;aspartate family amino acid metabolic process;0.0190786781665435!GO:0006643;membrane lipid metabolic process;0.0192441950928975!GO:0043407;negative regulation of MAP kinase activity;0.0195991715030044!GO:0005680;anaphase-promoting complex;0.0197074317393679!GO:0031577;spindle checkpoint;0.0198091518112987!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0201938210631069!GO:0030133;transport vesicle;0.0210207297902133!GO:0004221;ubiquitin thiolesterase activity;0.0211067442932776!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0214825633530953!GO:0008361;regulation of cell size;0.0217688522941828!GO:0008610;lipid biosynthetic process;0.0219974543123516!GO:0006607;NLS-bearing substrate import into nucleus;0.0220029615239266!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.022003481908558!GO:0000726;non-recombinational repair;0.0221154770522465!GO:0051287;NAD binding;0.0221154770522465!GO:0006220;pyrimidine nucleotide metabolic process;0.0221217387579952!GO:0007021;tubulin folding;0.0221738571096155!GO:0030127;COPII vesicle coat;0.0221744216346812!GO:0012507;ER to Golgi transport vesicle membrane;0.0221744216346812!GO:0005663;DNA replication factor C complex;0.0224145792496106!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0230627406452439!GO:0000123;histone acetyltransferase complex;0.0233925163199012!GO:0008536;Ran GTPase binding;0.0238240403955088!GO:0004532;exoribonuclease activity;0.0244628874912249!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0244628874912249!GO:0030496;midbody;0.0246297910872013!GO:0051656;establishment of organelle localization;0.0246432075707983!GO:0006644;phospholipid metabolic process;0.0246756879539382!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0247741945469942!GO:0042168;heme metabolic process;0.0249155423834094!GO:0000119;mediator complex;0.0252022096143007!GO:0065007;biological regulation;0.0252022096143007!GO:0005732;small nucleolar ribonucleoprotein complex;0.0256892583100477!GO:0022411;cellular component disassembly;0.0257792071700844!GO:0031625;ubiquitin protein ligase binding;0.025866601146253!GO:0006779;porphyrin biosynthetic process;0.025866601146253!GO:0033014;tetrapyrrole biosynthetic process;0.025866601146253!GO:0030119;AP-type membrane coat adaptor complex;0.0261251369823173!GO:0000793;condensed chromosome;0.0263883400156137!GO:0051101;regulation of DNA binding;0.0274663570228746!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0281352400797191!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0285008384194588!GO:0010257;NADH dehydrogenase complex assembly;0.0285008384194588!GO:0033108;mitochondrial respiratory chain complex assembly;0.0285008384194588!GO:0005938;cell cortex;0.0286045881263136!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0286114704715358!GO:0030508;thiol-disulfide exchange intermediate activity;0.0290687830883953!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0290687830883953!GO:0000077;DNA damage checkpoint;0.0291065508572944!GO:0006984;ER-nuclear signaling pathway;0.0297162143104836!GO:0040029;regulation of gene expression, epigenetic;0.0297367321350146!GO:0004722;protein serine/threonine phosphatase activity;0.0297367321350146!GO:0006301;postreplication repair;0.0298609641646882!GO:0016049;cell growth;0.0299247471527781!GO:0030131;clathrin adaptor complex;0.0300867218304075!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0304600310397264!GO:0045039;protein import into mitochondrial inner membrane;0.0304600310397264!GO:0016197;endosome transport;0.0309930361438011!GO:0046983;protein dimerization activity;0.0312668121164908!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0318313623999578!GO:0031371;ubiquitin conjugating enzyme complex;0.0326792674487964!GO:0008415;acyltransferase activity;0.0332447874473612!GO:0007034;vacuolar transport;0.0333316938506621!GO:0005784;translocon complex;0.0334926485831456!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0351974937370663!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0351974937370663!GO:0031901;early endosome membrane;0.0353180712738157!GO:0006519;amino acid and derivative metabolic process;0.0361032143528601!GO:0017134;fibroblast growth factor binding;0.0363973900393954!GO:0008538;proteasome activator activity;0.036476586082672!GO:0043086;negative regulation of catalytic activity;0.0374444105711359!GO:0006360;transcription from RNA polymerase I promoter;0.0374472977324483!GO:0042809;vitamin D receptor binding;0.0381188037038595!GO:0000097;sulfur amino acid biosynthetic process;0.0398384240706849!GO:0030433;ER-associated protein catabolic process;0.040070825034438!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.040070825034438!GO:0017166;vinculin binding;0.0401599143403214!GO:0047485;protein N-terminus binding;0.0408208428053587!GO:0016408;C-acyltransferase activity;0.0412119316534176!GO:0045815;positive regulation of gene expression, epigenetic;0.0422329584417482!GO:0008320;protein transmembrane transporter activity;0.042502419260454!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0428662781484051!GO:0042769;DNA damage response, detection of DNA damage;0.043326103907272!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0441609360412874!GO:0008287;protein serine/threonine phosphatase complex;0.0441968810328122!GO:0022884;macromolecule transmembrane transporter activity;0.04430291301577!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.04430291301577!GO:0006417;regulation of translation;0.0443394194444449!GO:0042054;histone methyltransferase activity;0.0444798618808888!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0450395601535088!GO:0006379;mRNA cleavage;0.046011124894648!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.046011124894648!GO:0030149;sphingolipid catabolic process;0.046080052546429!GO:0009113;purine base biosynthetic process;0.046080052546429!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.046080052546429!GO:0004523;ribonuclease H activity;0.0467924271437916!GO:0030911;TPR domain binding;0.046959245807202!GO:0050178;phenylpyruvate tautomerase activity;0.047551307633936!GO:0016746;transferase activity, transferring acyl groups;0.0477140192959721!GO:0005652;nuclear lamina;0.0484970556854272!GO:0050681;androgen receptor binding;0.0485527527704596!GO:0006564;L-serine biosynthetic process;0.0485860237234337!GO:0016835;carbon-oxygen lyase activity;0.048631668069403!GO:0003887;DNA-directed DNA polymerase activity;0.0487740468717761!GO:0022406;membrane docking;0.0489968673860077!GO:0048278;vesicle docking;0.0489968673860077!GO:0042026;protein refolding;0.0489968673860077!GO:0000805;X chromosome;0.0490963809508304!GO:0001740;Barr body;0.0490963809508304
|sample_id=10549
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=stomach
|top_motifs=NKX2-1,4:2.80906551958;LEF1_TCF7_TCF7L1,2:2.1942980726;PBX1:2.01647909049;CRX:2.00517882043;NANOG:1.78384707731;ELK1,4_GABP{A,B1}:1.76087039878;NRF1:1.73508209147;RBPJ:1.71243096849;TFDP1:1.6260105193;HOX{A6,A7,B6,B7}:1.47851365335;NFY{A,B,C}:1.43849716847;CDX1,2,4:1.27484689435;YY1:1.26183264165;ZNF143:1.25813507881;E2F1..5:1.25442509829;bHLH_family:1.25109213428;FOX{I1,J2}:1.06000860117;HOX{A5,B5}:1.03358155818;RFX2..5_RFXANK_RFXAP:1.01823066009;PRRX1,2:1.01246668038;LHX3,4:0.989647678735;MYB:0.987974301576;GFI1:0.895664519139;SOX{8,9,10}:0.88588510949;PAX8:0.881664794724;DBP:0.875874229355;PITX1..3:0.862411809368;FOXA2:0.852589117581;EVI1:0.833027022726;POU3F1..4:0.828729574002;T:0.826074965138;FOXP1:0.783885088232;ESRRA:0.745429070689;SOX17:0.737407722009;RXR{A,B,G}:0.7280081482;POU6F1:0.721232180893;HOX{A4,D4}:0.714966591486;VSX1,2:0.693625035807;POU1F1:0.689991387207;BREu{core}:0.659663218421;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.657428521369;STAT5{A,B}:0.621614921998;ALX1:0.593341988581;SREBF1,2:0.577792259227;PAX4:0.576768908652;TEF:0.551586769895;SOX2:0.49396057609;NR5A1,2:0.472422953218;STAT1,3:0.444417273251;ADNP_IRX_SIX_ZHX:0.440644538381;ONECUT1,2:0.432690810164;TP53:0.424795860062;ZFP161:0.381896874965;ARID5B:0.37577976047;PDX1:0.354416873235;EGR1..3:0.332991291089;MYOD1:0.316789714939;OCT4_SOX2{dimer}:0.29837795651;PATZ1:0.296261650046;NKX2-3_NKX2-5:0.283649535662;HIC1:0.27899821338;FOXN1:0.278773774491;CDC5L:0.267645085431;GZF1:0.247224465536;HBP1_HMGB_SSRP1_UBTF:0.237815158944;ZBTB6:0.217406723168;CREB1:0.210278385242;MZF1:0.188222598277;RFX1:0.177005183282;GATA6:0.160957195138;GTF2A1,2:0.148484346798;ATF4:0.137819467456;MYBL2:0.131110755069;FOXL1:0.127152782523;BPTF:0.125215573827;PPARG:0.114716953645;FOX{D1,D2}:0.10758028374;GFI1B:0.0957474131286;RREB1:0.0922318287471;SNAI1..3:0.0918468947232;MTE{core}:0.0870124735857;ZBTB16:0.0706623491425;NANOG{mouse}:0.0502835713701;SOX5:0.0435404018291;TGIF1:0.0344688189047;ELF1,2,4:0.0270103896105;ZEB1:0.00639251326395;FOXP3:0.00584238916715;FOXQ1:-0.00218259212868;CUX2:-0.00595172095107;PAX5:-0.00760650169067;ZIC1..3:-0.0163157792673;HSF1,2:-0.0172605234896;EN1,2:-0.0257579305391;RORA:-0.039708455658;SP1:-0.0585515171715;HNF4A_NR2F1,2:-0.0619451735736;TOPORS:-0.0673474057801;NKX6-1,2:-0.101216401082;PAX1,9:-0.128134071487;ZNF384:-0.133502643832;ATF5_CREB3:-0.142860761392;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.143004682634;TFAP2B:-0.144664177307;HNF1A:-0.163975227495;TEAD1:-0.186963860124;HAND1,2:-0.197108241091;KLF4:-0.208392303287;XBP1:-0.225788521398;AHR_ARNT_ARNT2:-0.237863703896;NFE2L1:-0.269417690222;PAX2:-0.27209532857;MEF2{A,B,C,D}:-0.286304624633;LMO2:-0.301761038027;IKZF1:-0.308461525868;HLF:-0.309593014705;NR6A1:-0.317128315934;IRF7:-0.327072890788;DMAP1_NCOR{1,2}_SMARC:-0.328335500832;HOXA9_MEIS1:-0.334571694991;ESR1:-0.336173794364;IKZF2:-0.340568459516;TBX4,5:-0.350648846245;POU2F1..3:-0.362220226431;NFKB1_REL_RELA:-0.366189818086;PAX3,7:-0.373364483773;REST:-0.393583756361;NKX2-2,8:-0.39877589928;POU5F1:-0.40102460135;NKX3-2:-0.410850608048;NFE2:-0.423489973548;AIRE:-0.431760441106;ATF2:-0.441207407393;UFEwm:-0.443239616727;FOS_FOS{B,L1}_JUN{B,D}:-0.444916912292;AR:-0.464720692363;GTF2I:-0.470367587174;NR1H4:-0.471422866866;RUNX1..3:-0.471680154946;SPI1:-0.472620284846;MAZ:-0.513160312155;MED-1{core}:-0.524216856374;FOX{F1,F2,J1}:-0.549025552224;NFE2L2:-0.562239634558;TLX1..3_NFIC{dimer}:-0.563699229399;JUN:-0.567085373862;SPIB:-0.591340727012;FOSL2:-0.596899785332;GCM1,2:-0.597044633354;TAL1_TCF{3,4,12}:-0.599326608959;PRDM1:-0.599597970198;FOXO1,3,4:-0.599670670585;XCPE1{core}:-0.609871769466;NFIX:-0.626148686767;SRF:-0.639180188711;BACH2:-0.658035435421;FOXM1:-0.670025089435;HMGA1,2:-0.670514229657;GATA4:-0.672452162851;CEBPA,B_DDIT3:-0.674538891679;ZNF148:-0.691523954147;MYFfamily:-0.691890348757;NFIL3:-0.74019600084;TFCP2:-0.744385343225;NFATC1..3:-0.767036736918;NHLH1,2:-0.767352955602;NR3C1:-0.778522057641;ALX4:-0.809434120769;HES1:-0.813956715049;ETS1,2:-0.841902658797;EBF1:-0.866185025908;PAX6:-0.871212035159;STAT2,4,6:-0.952510565933;IRF1,2:-0.984803399917;SMAD1..7,9:-1.0056705829;TFAP4:-1.0191783331;TFAP2{A,C}:-1.02085144474;FOXD3:-1.06244699808;TLX2:-1.06521978533;TBP:-1.06588571565;MAFB:-1.10303181714;NKX3-1:-1.1042221866;ZNF238:-1.15730410337;RXRA_VDR{dimer}:-1.40601037519;MTF1:-1.43127401424;HIF1A:-1.43253129302;ATF6:-1.613696097;GLI1..3:-1.64395894468;EP300:-1.69484327426;HMX1:-1.79276974059;SPZ1:-1.91453036358;ZNF423:-2.31112388141
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10549-107H9;search_select_hide=table117:FF:10549-107H9
}}
}}

Latest revision as of 14:28, 3 June 2020

Name:gastric cancer cell line:AZ521
Species:Human (Homo sapiens)
Library ID:CNhs11286
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuestomach
dev stageNA
sexunknown
ageunknown
cell typeunclassifiable
cell lineAZ521
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005896
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11286 CAGE DRX007892 DRR008764
Accession ID Hg19

Library idBAMCTSS
CNhs11286 DRZ000189 DRZ001574
Accession ID Hg38

Library idBAMCTSS
CNhs11286 DRZ011539 DRZ012924
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0183
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.509
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0.89
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0466
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.00792
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.236
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.254
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.23
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.442
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.00452
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11286

Jaspar motifP-value
MA0002.26.17494e-4
MA0003.10.078
MA0004.10.509
MA0006.10.419
MA0007.10.445
MA0009.10.85
MA0014.10.876
MA0017.10.0331
MA0018.20.255
MA0019.10.419
MA0024.18.91852e-4
MA0025.10.817
MA0027.10.393
MA0028.11.8742e-4
MA0029.10.471
MA0030.10.244
MA0031.10.891
MA0035.20.144
MA0038.14.34681e-4
MA0039.20.716
MA0040.10.315
MA0041.10.272
MA0042.10.274
MA0043.10.0904
MA0046.10.189
MA0047.20.338
MA0048.10.163
MA0050.12.40829e-4
MA0051.10.00226
MA0052.10.021
MA0055.10.018
MA0057.10.213
MA0058.10.263
MA0059.10.836
MA0060.15.36005e-11
MA0061.10.0276
MA0062.21.17326e-4
MA0065.20.149
MA0066.10.374
MA0067.10.95
MA0068.10.123
MA0069.10.556
MA0070.10.00791
MA0071.10.754
MA0072.10.38
MA0073.10.808
MA0074.10.286
MA0076.14.56708e-5
MA0077.10.663
MA0078.10.969
MA0079.20.758
MA0080.21.35621e-9
MA0081.10.0795
MA0083.10.0215
MA0084.10.361
MA0087.10.241
MA0088.10.203
MA0090.10.713
MA0091.10.0276
MA0092.10.0778
MA0093.10.319
MA0099.28.41154e-13
MA0100.10.103
MA0101.10.455
MA0102.20.0114
MA0103.10.743
MA0104.20.25
MA0105.10.00616
MA0106.10.776
MA0107.10.184
MA0108.20.0087
MA0111.10.877
MA0112.23.23401e-5
MA0113.10.0287
MA0114.10.672
MA0115.10.912
MA0116.10.0367
MA0117.10.801
MA0119.10.114
MA0122.10.919
MA0124.10.146
MA0125.10.235
MA0131.10.0738
MA0135.10.204
MA0136.19.5186e-6
MA0137.20.173
MA0138.20.0176
MA0139.10.563
MA0140.10.0772
MA0141.10.274
MA0142.10.932
MA0143.10.207
MA0144.10.0382
MA0145.10.0728
MA0146.10.199
MA0147.10.293
MA0148.10.624
MA0149.10.893
MA0150.10.00929
MA0152.10.738
MA0153.10.668
MA0154.10.00781
MA0155.10.133
MA0156.10.44
MA0157.10.861
MA0159.10.306
MA0160.10.353
MA0162.10.0829
MA0163.10.009
MA0164.10.834
MA0258.10.00483
MA0259.10.37



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11286

Novel motifP-value
10.471
100.414
1000.377
1010.762
1020.76
1030.378
1040.481
1050.865
1061.396e-4
1070.0206
1080.649
1090.538
110.29
1100.714
1110.35
1120.0251
1130.137
1140.111
1150.588
1160.809
1170.718
1180.757
1190.146
120.715
1200.597
1210.839
1220.905
1230.894
1240.678
1250.745
1260.541
1270.161
1280.00104
1290.991
130.598
1300.038
1310.0186
1320.876
1330.519
1340.521
1350.00527
1360.246
1370.349
1380.0368
1390.0164
140.704
1400.552
1410.503
1420.75
1430.0659
1440.586
1450.312
1460.669
1470.38
1480.152
1490.0593
150.299
1500.503
1510.0906
1520.134
1530.296
1540.753
1550.961
1560.415
1570.872
1580.662
1590.462
160.312
1600.165
1610.853
1620.693
1630.297
1640.352
1650.167
1661
1670.507
1680.839
1690.00831
170.29
180.208
190.112
20.0924
200.126
210.874
220.154
230.00779
240.786
250.598
260.402
270.0445
280.788
290.886
30.219
300.228
310.662
320.0156
330.708
340.485
350.68
360.9
370.143
380.534
390.367
40.213
400.814
410.348
420.774
430.148
440.158
450.399
460.112
470.8
480.729
490.356
50.242
500.902
510.489
520.0619
530.281
540.467
550.227
560.284
570.848
580.249
590.0404
60.992
600.0171
610.881
620.12
630.312
640.422
650.087
660.0295
670.382
680.13
690.734
70.786
700.165
710.234
720.219
730.309
740.745
750.892
760.585
770.0933
780.977
790.0465
80.392
800.45
810.288
820.0175
830.344
840.657
850.0113
860.616
870.822
880.528
890.0591
90.0581
900.484
910.0242
920.16
930.802
940.171
950.607
960.37
970.784
980.194
990.781



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11286


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3119 (gastrointestinal system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100787 (gastric cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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