FF:10589-108D4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005178 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005178 | ||
|accession_numbers=CAGE;DRX007829;DRR008701;DRZ000126;DRZ001511;DRZ011476;DRZ012861 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057130;DRR062889;DRZ007965 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000002,UBERON:0000995,UBERON:0000483,UBERON:0003134,UBERON:0000479,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0006955,UBERON:0004801,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002535 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:4362 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:4362 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0101967 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:182545234..182545252,-!p1@NEUROD1!2.75!558.28!NEUROD1;;chr20:20348740..20348757,+!p1@INSM1!2.72!518.73!INSM1;;chrX:25034067..25034088,-!p1@ARX!2.38!236.56!ARX;;chr8:41508327..41508355,-!p1@NKX6-3!2.34!217.92!NKX6-3;;chr7:73038839..73038862,-!p1@MLXIPL!2.29!193.99!MLXIPL;;chr4:57547454..57547469,-!p1@HOPX!2.22!165.02!HOPX;;chr6:117198400..117198441,+!p1@RFX6!2.12!129.75!RFX6;;chr13:28494130..28494168,+!p1@PDX1!2.02!104.30!PDX1;;chr13:72441315..72441454,-!p1@DACH1!1.99!189.20!DACH1;;chr11:31839488..31839515,-!p3@PAX6!1.99!95.99!PAX6;;chr5:50679228..50679288,+!p1@ISL1!1.95!88.43!ISL1;;chr7:127258139..127258173,-!p@chr7:127258139..127258173,-!1.95!87.67!PAX4;;chr18:55102628..55102646,+!p2@ONECUT2!1.92!81.88!ONECUT2;;chr8:76319876..76319926,+!p1@HNF4G!1.87!73.82!HNF4G;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.52!HNF4A;;chr11:31832658..31832681,-!p1@PAX6!1.83!66.01!PAX6;;chr18:55102598..55102623,+!p1@ONECUT2!1.80!61.47!ONECUT2;;chr20:22564895..22564910,-!p1@FOXA2!1.78!58.95!FOXA2;;chr2:219849897..219849928,-!p2@FEV!1.78!58.70!FEV;;chr1:214161272..214161322,+!p1@PROX1!1.75!76.84!PROX1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.61!39.55!SEBOX;;chr13:72441506..72441562,-!p3@DACH1!1.59!38.29!DACH1;;chr11:16419037..16419064,-!p3@SOX6!1.59!37.54!SOX6;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.51!ELF3;;chr7:156803329..156803362,-!p1@MNX1!1.54!34.01!MNX1;;chr6:10412392..10412409,-!p4@TFAP2A!1.53!37.54!TFAP2A;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.53!33.26!SEBOX;;chr8:53166899..53166914,-!p3@ST18!1.53!33.00!ST18;;chr8:53162037..53162058,-!p5@ST18!1.52!32.25!ST18;;chr16:85932760..85932775,+!p1@IRF8!1.51!31.24!IRF8;;chr11:61520075..61520136,+!p1@C11orf9!1.49!61.98!C11orf9;;chr6:10412600..10412637,-!p1@TFAP2A!1.49!49.38!TFAP2A;;chr1:10754477..10754517,-!p1@CASZ1!1.49!48.62!CASZ1;;chr3:157824202..157824211,-!p3@SHOX2!1.49!30.23!SHOX2;;chr11:31832610..31832639,-!p5@PAX6!1.49!29.73!PAX6;;chr14:33403881..33403924,+!p1@NPAS3!1.46!27.96!NPAS3;;chr13:72441074..72441172,-!p2@DACH1!1.43!25.95!DACH1;;chr12:103351444..103351461,+!p1@ASCL1!1.39!23.68!ASCL1;;chr7:127258190..127258201,-!p@chr7:127258190..127258201,-!1.37!22.67!PAX4;;chr7:127258120..127258138,-!p@chr7:127258120..127258138,-!1.37!22.42!PAX4;;chr11:31832581..31832601,-!p7@PAX6!1.37!22.42!PAX6;;chr20:22565370..22565388,-!p2@FOXA2!1.36!21.67!FOXA2;;chr11:2292226..2292270,-!p1@ASCL2!1.35!21.16!ASCL2;;chr8:41508303..41508308,-!p2@NKX6-3!1.34!20.66!NKX6-3;;chr2:239148671..239148686,-!p1@HES6!1.31!70.29!HES6;;chr17:53342311..53342400,+!p1@HLF!1.30!21.92!HLF;;chr1:27240455..27240474,-!p1@NR0B2!1.30!19.15!NR0B2;;chr2:242556880..242556899,-!p5@THAP4!1.30!19.15!THAP4;;chr11:31832807..31832823,-!p4@PAX6!1.30!18.89!PAX6;;chr1:209979467..209979494,-!p1@IRF6!1.29!20.91!IRF6;;chr8:11561684..11561751,+!p1@GATA4!1.28!17.89!GATA4;;chr13:41593493..41593506,-!p8@ELF1!1.27!17.64!ELF1;;chr6:19837592..19837621,+!p1@ID4!1.26!103.54!ID4;;chr13:28494109..28494122,+!p2@PDX1!1.26!17.13!PDX1;;chr7:27213893..27213954,-!p1@HOXA10!1.25!16.63!HOXA10;;chr4:149363494..149363543,-!p1@NR3C2!1.24!16.38!NR3C2;;chr1:201979703..201979721,+!p2@ELF3!1.23!15.87!ELF3;;chr7:73038867..73038878,-!p2@MLXIPL!1.23!15.87!MLXIPL;;chr11:31832862..31832884,-!p2@PAX6!1.18!14.11!PAX6;;chr13:28543285..28543314,-!p2@CDX2!1.18!14.11!CDX2;;chr5:50681985..50682031,+!p2@ISL1!1.17!13.86!ISL1;;chr1:165325006..165325012,-!p2@LMX1A!1.17!13.86!LMX1A;;chr11:31839453..31839462,-!p9@PAX6!1.16!13.35!PAX6;;chr13:28543431..28543487,-!p1@CDX2!1.15!13.10!CDX2;;chr17:46622440..46622477,-!p5@HOXB2!1.14!14.36!HOXB2;;chr2:242556900..242556916,-!p6@THAP4!1.13!12.60!THAP4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.13!12.60!ZBED1;;chr18:56940611..56940660,-!p1@RAX!1.13!12.34!RAX;;chr9:3525867..3525902,-!p3@RFX3!1.12!41.82!RFX3;;chr2:176994408..176994492,+!p1@HOXD8!1.12!12.09!HOXD8;;chr7:27219833..27219845,-!p7@HOXA10!1.12!12.09!HOXA10;;chr10:131762504..131762555,-!p1@EBF3!1.11!11.84!EBF3;;chr20:39317868..39317884,-!p1@MAFB!1.10!137.56!MAFB;;chr2:46524897..46524911,+!p2@EPAS1!1.10!32.75!EPAS1;;chr11:31832687..31832704,-!p6@PAX6!1.10!11.59!PAX6;;chr5:158526917..158526932,-!p1@EBF1!1.09!28.47!EBF1;;chr1:41827095..41827155,+!p1@FOXO6!1.08!14.86!FOXO6;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.08!11.09!POU3F3;;chr4:149363475..149363492,-!p2@NR3C2!1.08!11.09!NR3C2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.07!10.83!HOXC5;;chr3:157824437..157824459,-!p5@SHOX2!1.06!10.58!SHOX2;;chr16:67197654..67197716,+!p3@HSF4!1.05!10.33!HSF4;;chr2:182545282..182545294,-!p2@NEUROD1!1.04!10.08!NEUROD1;;chr13:37494275..37494304,-!p2@SMAD9!1.04!10.08!SMAD9;;chr5:124084493..124084524,-!p2@ZNF608!1.03!21.92!ZNF608;;chr2:182545296..182545307,-!p3@NEUROD1!1.03!9.83!NEUROD1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.02!20.41!ZNF395;;chr6:117198376..117198383,+!p2@RFX6!1.02!9.57!RFX6;;chr7:149471046..149471070,-!p4@ZNF467!1.02!9.57!ZNF467;;chr9:20382446..20382493,-!p4@MLLT3!1.02!9.57!MLLT3;;chr7:9961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| |expression_enrichment_score=chr2:182545234..182545252,-!p1@NEUROD1!2.75!558.28!NEUROD1;;chr20:20348740..20348757,+!p1@INSM1!2.72!518.73!INSM1;;chrX:25034067..25034088,-!p1@ARX!2.38!236.56!ARX;;chr8:41508327..41508355,-!p1@NKX6-3!2.34!217.92!NKX6-3;;chr7:73038839..73038862,-!p1@MLXIPL!2.29!193.99!MLXIPL;;chr4:57547454..57547469,-!p1@HOPX!2.22!165.02!HOPX;;chr6:117198400..117198441,+!p1@RFX6!2.12!129.75!RFX6;;chr13:28494130..28494168,+!p1@PDX1!2.02!104.30!PDX1;;chr13:72441315..72441454,-!p1@DACH1!1.99!189.20!DACH1;;chr11:31839488..31839515,-!p3@PAX6!1.99!95.99!PAX6;;chr5:50679228..50679288,+!p1@ISL1!1.95!88.43!ISL1;;chr7:127258139..127258173,-!p@chr7:127258139..127258173,-!1.95!87.67!PAX4;;chr18:55102628..55102646,+!p2@ONECUT2!1.92!81.88!ONECUT2;;chr8:76319876..76319926,+!p1@HNF4G!1.87!73.82!HNF4G;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.52!HNF4A;;chr11:31832658..31832681,-!p1@PAX6!1.83!66.01!PAX6;;chr18:55102598..55102623,+!p1@ONECUT2!1.80!61.47!ONECUT2;;chr20:22564895..22564910,-!p1@FOXA2!1.78!58.95!FOXA2;;chr2:219849897..219849928,-!p2@FEV!1.78!58.70!FEV;;chr1:214161272..214161322,+!p1@PROX1!1.75!76.84!PROX1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.61!39.55!SEBOX;;chr13:72441506..72441562,-!p3@DACH1!1.59!38.29!DACH1;;chr11:16419037..16419064,-!p3@SOX6!1.59!37.54!SOX6;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.51!ELF3;;chr7:156803329..156803362,-!p1@MNX1!1.54!34.01!MNX1;;chr6:10412392..10412409,-!p4@TFAP2A!1.53!37.54!TFAP2A;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.53!33.26!SEBOX;;chr8:53166899..53166914,-!p3@ST18!1.53!33.00!ST18;;chr8:53162037..53162058,-!p5@ST18!1.52!32.25!ST18;;chr16:85932760..85932775,+!p1@IRF8!1.51!31.24!IRF8;;chr11:61520075..61520136,+!p1@C11orf9!1.49!61.98!C11orf9;;chr6:10412600..10412637,-!p1@TFAP2A!1.49!49.38!TFAP2A;;chr1:10754477..10754517,-!p1@CASZ1!1.49!48.62!CASZ1;;chr3:157824202..157824211,-!p3@SHOX2!1.49!30.23!SHOX2;;chr11:31832610..31832639,-!p5@PAX6!1.49!29.73!PAX6;;chr14:33403881..33403924,+!p1@NPAS3!1.46!27.96!NPAS3;;chr13:72441074..72441172,-!p2@DACH1!1.43!25.95!DACH1;;chr12:103351444..103351461,+!p1@ASCL1!1.39!23.68!ASCL1;;chr7:127258190..127258201,-!p@chr7:127258190..127258201,-!1.37!22.67!PAX4;;chr7:127258120..127258138,-!p@chr7:127258120..127258138,-!1.37!22.42!PAX4;;chr11:31832581..31832601,-!p7@PAX6!1.37!22.42!PAX6;;chr20:22565370..22565388,-!p2@FOXA2!1.36!21.67!FOXA2;;chr11:2292226..2292270,-!p1@ASCL2!1.35!21.16!ASCL2;;chr8:41508303..41508308,-!p2@NKX6-3!1.34!20.66!NKX6-3;;chr2:239148671..239148686,-!p1@HES6!1.31!70.29!HES6;;chr17:53342311..53342400,+!p1@HLF!1.30!21.92!HLF;;chr1:27240455..27240474,-!p1@NR0B2!1.30!19.15!NR0B2;;chr2:242556880..242556899,-!p5@THAP4!1.30!19.15!THAP4;;chr11:31832807..31832823,-!p4@PAX6!1.30!18.89!PAX6;;chr1:209979467..209979494,-!p1@IRF6!1.29!20.91!IRF6;;chr8:11561684..11561751,+!p1@GATA4!1.28!17.89!GATA4;;chr13:41593493..41593506,-!p8@ELF1!1.27!17.64!ELF1;;chr6:19837592..19837621,+!p1@ID4!1.26!103.54!ID4;;chr13:28494109..28494122,+!p2@PDX1!1.26!17.13!PDX1;;chr7:27213893..27213954,-!p1@HOXA10!1.25!16.63!HOXA10;;chr4:149363494..149363543,-!p1@NR3C2!1.24!16.38!NR3C2;;chr1:201979703..201979721,+!p2@ELF3!1.23!15.87!ELF3;;chr7:73038867..73038878,-!p2@MLXIPL!1.23!15.87!MLXIPL;;chr11:31832862..31832884,-!p2@PAX6!1.18!14.11!PAX6;;chr13:28543285..28543314,-!p2@CDX2!1.18!14.11!CDX2;;chr5:50681985..50682031,+!p2@ISL1!1.17!13.86!ISL1;;chr1:165325006..165325012,-!p2@LMX1A!1.17!13.86!LMX1A;;chr11:31839453..31839462,-!p9@PAX6!1.16!13.35!PAX6;;chr13:28543431..28543487,-!p1@CDX2!1.15!13.10!CDX2;;chr17:46622440..46622477,-!p5@HOXB2!1.14!14.36!HOXB2;;chr2:242556900..242556916,-!p6@THAP4!1.13!12.60!THAP4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.13!12.60!ZBED1;;chr18:56940611..56940660,-!p1@RAX!1.13!12.34!RAX;;chr9:3525867..3525902,-!p3@RFX3!1.12!41.82!RFX3;;chr2:176994408..176994492,+!p1@HOXD8!1.12!12.09!HOXD8;;chr7:27219833..27219845,-!p7@HOXA10!1.12!12.09!HOXA10;;chr10:131762504..131762555,-!p1@EBF3!1.11!11.84!EBF3;;chr20:39317868..39317884,-!p1@MAFB!1.10!137.56!MAFB;;chr2:46524897..46524911,+!p2@EPAS1!1.10!32.75!EPAS1;;chr11:31832687..31832704,-!p6@PAX6!1.10!11.59!PAX6;;chr5:158526917..158526932,-!p1@EBF1!1.09!28.47!EBF1;;chr1:41827095..41827155,+!p1@FOXO6!1.08!14.86!FOXO6;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.08!11.09!POU3F3;;chr4:149363475..149363492,-!p2@NR3C2!1.08!11.09!NR3C2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.07!10.83!HOXC5;;chr3:157824437..157824459,-!p5@SHOX2!1.06!10.58!SHOX2;;chr16:67197654..67197716,+!p3@HSF4!1.05!10.33!HSF4;;chr2:182545282..182545294,-!p2@NEUROD1!1.04!10.08!NEUROD1;;chr13:37494275..37494304,-!p2@SMAD9!1.04!10.08!SMAD9;;chr5:124084493..124084524,-!p2@ZNF608!1.03!21.92!ZNF608;;chr2:182545296..182545307,-!p3@NEUROD1!1.03!9.83!NEUROD1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.02!20.41!ZNF395;;chr6:117198376..117198383,+!p2@RFX6!1.02!9.57!RFX6;;chr7:149471046..149471070,-!p4@ZNF467!1.02!9.57!ZNF467;;chr9:20382446..20382493,-!p4@MLLT3!1.02!9.57!MLLT3;;chr7:99613250..99613264,+!p2@ZKSCAN1!1.01!27.46!ZKSCAN1;;chr2:45168834..45168847,+!p2@SIX3!1.01!9.32!SIX3;;chr1:214161328..214161348,+!p2@PROX1!1.01!9.32!PROX1;;chr20:62795834..62795878,+!p2@MYT1!1.01!9.32!MYT1;;chr17:46688334..46688385,-!p1@HOXB7!1.00!13.10!HOXB7;;chr17:46806067..46806097,-!p1@HOXB13!1.00!9.07!HOXB13;;chr1:2985760..2985774,+!p1@PRDM16!1.00!9.07!PRDM16;;chr5:158524625..158524669,-!p6@EBF1!1.00!9.07!EBF1;;chr13:37494365..37494381,-!p1@SMAD9!0.99!15.37!SMAD9;;chr18:72922743..72922761,+!p3@TSHZ1!0.98!28.97!TSHZ1;;chr9:3525910..3525955,-!p4@RFX3!0.98!26.20!RFX3;;chr6:144289132..144289134,-!p3@PLAGL1!0.98!20.15!PLAGL1;;chr14:33408072..33408114,+!p2@NPAS3!0.98!10.08!NPAS3;;chr11:31827535..31827565,-!p11@PAX6!0.98!8.57!PAX6;;chr9:3525727..3525828,-!p2@RFX3!0.97!21.92!RFX3;;chr3:157823517..157823562,-!p1@SHOX2!0.97!9.07!SHOX2;;chr2:219849805..219849819,-!p3@FEV!0.97!8.31!FEV;;chr13:37494391..37494406,-!p5@SMAD9!0.97!8.31!SMAD9;;chr5:92918919..92918942,+!p1@NR2F1!0.96!37.29!NR2F1;;chrX:84499081..84499115,+!p2@ZNF711!0.96!12.09!ZNF711;;chr11:2291814..2291825,-!p2@ASCL2!0.96!8.06!ASCL2;;chr11:63684602..63684664,-!p1@RCOR2!0.95!15.87!RCOR2;;chr12:54393880..54393962,+!p1@HOXC9!0.94!7.81!HOXC9;;chr20:21378152..21378169,-!p1@NKX2-4!0.94!7.81!NKX2-4;;chr2:162272889..162272915,+!p2@TBR1!0.94!7.81!TBR1;;chr8:60031762..60031803,-!p3@TOX!0.93!11.09!TOX;;chr15:41913690..41913753,+!p2@MGA!0.92!18.14!MGA;;chr17:7197911..7197964,-!p1@YBX2!0.92!7.31!YBX2;;chr1:214161358..214161377,+!p3@PROX1!0.92!7.31!PROX1;;chr20:62795799..62795819,+!p1@MYT1!0.92!7.31!MYT1;;chr2:166326200..166326216,+!p1@CSRNP3!0.91!10.58!CSRNP3;;chr8:128747757..128747800,+!p7@MYC!0.91!9.83!MYC;;chr6:117198458..117198464,+!p4@RFX6!0.91!7.05!RFX6;;chr7:27219849..27219867,-!p6@HOXA10!0.91!7.05!HOXA10;;chr7:96634850..96634874,+!p3@DLX6!0.91!7.05!DLX6;;chr8:53161967..53161974,-!p11@ST18!0.91!7.05!ST18;;chr20:22565185..22565223,-!p3@FOXA2!0.91!7.05!FOXA2;;chr3:52001448..52001478,-!p2@PCBP4!0.90!100.77!PCBP4;;chr20:50159198..50159299,-!p1@NFATC2!0.90!10.33!NFATC2;;chr3:18486354..18486377,-!p2@SATB1!0.90!8.82!SATB1;;chr3:157824156..157824164,-!p4@SHOX2!0.89!6.80!SHOX2;;chr1:10856694..10856715,-!p3@CASZ1!0.89!6.80!CASZ1;;chr12:85673977..85674015,+!p1@ALX1!0.89!6.80!ALX1;;chr16:67198683..67198698,+!p2@HSF4!0.89!6.80!HSF4;;chr2:25475120..25475176,-!p2@DNMT3A!0.88!9.07!DNMT3A;;chr18:55102806..55102847,+!p3@ONECUT2!0.88!6.55!ONECUT2;;chr1:10856639..10856662,-!p2@CASZ1!0.88!6.55!CASZ1;;chr1:10856665..10856683,-!p4@CASZ1!0.88!6.55!CASZ1;;chr1:214161619..214161629,+!p5@PROX1!0.88!6.55!PROX1;;chr14:33403648..33403710,+!p3@NPAS3!0.88!6.55!NPAS3;;chr7:27135591..27135658,-!p1@HOXA1!0.87!12.85!HOXA1;;chr6:144385698..144385742,-!p2@PLAGL1!0.87!7.81!PLAGL1;;chr11:31832549..31832562,-!p10@PAX6!0.86!6.30!PAX6;;chr13:37494248..37494260,-!p3@SMAD9!0.86!6.30!SMAD9;;chr5:92918894..92918912,+!p2@NR2F1!0.85!20.91!NR2F1;;chrX:84498989..84499003,+!p1@ZNF711!0.85!8.57!ZNF711;;chrX:30327504..30327509,-!p1@NR0B1!0.85!6.05!NR0B1;;chr2:45236540..45236577,-!p1@SIX2!0.85!6.05!SIX2;;chr16:67198633..67198671,+!p1@HSF4!0.85!6.05!HSF4;;chr17:74137321..74137337,-!p1@FOXJ1!0.85!6.05!FOXJ1;;chr20:62795951..62795965,+!p3@MYT1!0.85!6.05!MYT1;;chr20:51588873..51588953,+!p1@TSHZ2!0.84!8.06!TSHZ2;;chr1:165325939..165325958,-!p1@LMX1A!0.83!5.79!LMX1A;;chr2:219850049..219850060,-!p8@FEV!0.83!5.79!FEV;;chr7:73038889..73038905,-!p3@MLXIPL!0.83!5.79!MLXIPL;;chr8:93107451..93107468,-!p2@RUNX1T1!0.83!5.79!RUNX1T1;;chr9:128509663..128509715,+!p1@PBX3!0.82!20.15!PBX3;;chr3:40547564..40547616,+!p1@ZNF620!0.82!8.06!ZNF620;;chr12:24103844..24103880,-!p3@SOX5!0.82!5.54!SOX5;;chr6:28411241..28411284,-!p1@ZSCAN23!0.80!17.89!ZSCAN23;;chr17:46806098..46806118,-!p3@HOXB13!0.80!5.29!HOXB13;;chr15:80696703..80696754,+!p1@ARNT2!0.79!7.05!ARNT2;;chr7:14028488..14028516,-!p2@ETV1!0.79!5.79!ETV1;;chr2:200323414..200323455,-!p1@SATB2!0.78!11.34!SATB2;;chr2:219849644..219849655,-!p7@FEV!0.78!5.04!FEV;;chr2:45168997..45169020,+!p4@SIX3!0.78!5.04!SIX3;;chr13:72440434..72440479,-!p6@DACH1!0.78!5.04!DACH1;;chr17:38020392..38020477,-!p1@IKZF3!0.78!5.04!IKZF3;;chr13:41593425..41593480,-!p1@ELF1!0.76!33.51!ELF1;;chr12:121416340..121416360,+!p1@HNF1A!0.76!4.79!HNF1A;;chr12:24102576..24102623,-!p2@SOX5!0.76!4.79!SOX5;;chr2:219849784..219849798,-!p5@FEV!0.76!4.79!FEV;;chr19:48076391..48076408,-!p@chr19:48076391..48076408,-!0.76!4.79!ZNF541;;chr20:45087928..45087965,-!p1@ENST00000400371,p1@uc002xry.2!0.76!4.79!ZNF663;;chr17:46806035..46806059,-!p2@HOXB13!0.76!4.79!HOXB13;;chr17:46806419..46806438,-!p4@HOXB13!0.76!4.79!HOXB13;;chr5:158524563..158524578,-!p11@EBF1!0.76!4.79!EBF1;;chr8:93107696..93107716,-!p8@RUNX1T1!0.76!4.79!RUNX1T1;;chr19:50432453..50432468,+!p1@ATF5!0.75!288.71!ATF5;;chr6:144329384..144329405,-!p1@PLAGL1!0.75!59.71!PLAGL1;;chr8:128748308..128748324,+!p2@MYC!0.74!138.56!MYC;;chr7:149470641..149470694,-!p1@ZNF467!0.74!22.67!ZNF467;;chr7:6655225..6655279,+!p1@ENST00000457543!0.74!7.05!ZNF853;;chr15:37392576..37392589,-!p12@MEIS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| ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316 | |||
|fonse_cell_line=FF:0101120,FF:0101967 | |fonse_cell_line=FF:0101120,FF:0101967 | ||
|fonse_cell_line_closure=FF:0101120,FF:0101967 | |fonse_cell_line_closure=FF:0101120,FF:0101967 | ||
| Line 36: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10589-108D4 | |id=FF:10589-108D4 | ||
|is_a=CL:0002535;;EFO:0002091;;FF:0000210;;FF:0100297;;FF:0101967 | |is_a=CL:0002535;;EFO:0002091;;FF:0000210;;FF:0100297;;FF:0101967 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11725 | |||
|library_id_phase_based=2:CNhs11725 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10589 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10589 | |||
|name=argyrophil small cell carcinoma cell line:TC-YIK | |name=argyrophil small cell carcinoma cell line:TC-YIK | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11725,LSID819,release009,COMPLETED | |profile_hcage=CNhs11725,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0841565801503228,0.0975809997847489,-0.179781132408765,0.117210816171492,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0238859847610804,0,0,0,0.0487904998923745,0,0.25608592029341,0,0,0.111518020457847,0,0,0,0,0,0,0,0,0,0,0,0,-0.228294289697694,0.0975809997847489,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.0975809997847489,0.147482248994104,0,0,0.147130983023612,0,0,0,0,0,0,0,0,0.0975809997847489,0,0,0,0,0,0,0,0,0.0412380481419851,0.0487904998923745,0,0.0975809997847489,0,0,0,-0.140443645177397,0,0,0,0.059926269249047,0.131771934063091,0,0,0,0,0.343428712043505,0.331343614063706,0,0,0,0,0,0,0,0,0,0,0.244474610236709,0,0,0,0,0,0,0.124358437718145,0.177208995109508,0,0,-0.057439935027299,-0.0619424684363849,0,0,0.0975809997847489,0,0,0 | |||
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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 79: | ||
|rna_tube_id=108D4 | |rna_tube_id=108D4 | ||
|rna_weight_ug=78.01812 | |rna_weight_ug=78.01812 | ||
|rnaseq_library_id=RDhi10073 | |||
|sample_age=31 | |sample_age=31 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0443 | |sample_cell_catalog=RCB0443 | ||
|sample_cell_line=TC-YIK | |sample_cell_line=TC-YIK | ||
| Line 80: | Line 103: | ||
|top_motifs=VSX1,2:3.6507915571;HNF1A:3.1498475594;NANOG:3.12561698813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.75106013707;POU6F1:2.38449675319;SNAI1..3:2.35943060792;YY1:2.35147076981;FOXA2:2.27013025185;NKX6-1,2:2.20973688567;bHLH_family:2.1684821406;ZEB1:2.16413114166;LHX3,4:2.08742180018;NRF1:2.00285672862;DBP:1.99998361048;HOX{A6,A7,B6,B7}:1.97302982241;RFX2..5_RFXANK_RFXAP:1.96046980567;PITX1..3:1.94342486026;MYOD1:1.91803463521;RFX1:1.88877834026;HNF4A_NR2F1,2:1.71347563244;LMO2:1.67328448416;ONECUT1,2:1.58445765137;NKX2-1,4:1.53247801283;FOXM1:1.52003199962;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.44593593011;ADNP_IRX_SIX_ZHX:1.38237745633;FOXP1:1.3635665031;FOX{D1,D2}:1.28250143012;RBPJ:1.26898436674;AIRE:1.23633011907;ARID5B:1.2173482481;E2F1..5:1.16299780872;TEF:1.05258734002;CDX1,2,4:1.02824735568;FOX{F1,F2,J1}:0.956301349771;NKX3-1:0.954751730619;REST:0.953699687586;ZBTB16:0.944010007105;NFY{A,B,C}:0.943688621799;ZNF143:0.926189635774;NKX2-3_NKX2-5:0.885387081031;GFI1:0.832564408457;ELK1,4_GABP{A,B1}:0.81522828784;FOXL1:0.797100543828;ZFP161:0.795061673971;SOX{8,9,10}:0.750819874526;PAX4:0.696089374067;PBX1:0.674819081257;TOPORS:0.674034147644;MYB:0.559919970767;POU1F1:0.530997751919;CUX2:0.498105439025;PAX5:0.47247391656;AHR_ARNT_ARNT2:0.428693851096;GATA6:0.383237366351;HAND1,2:0.363494126772;PAX3,7:0.333568703665;HIC1:0.324761001303;CDC5L:0.256756317659;IKZF2:0.256481899415;RREB1:0.255607793324;MTE{core}:0.251578308206;BREu{core}:0.24506342441;FOXQ1:0.2346196994;PAX6:0.222763904326;STAT5{A,B}:0.214454500849;FOXD3:0.213282870294;HIF1A:0.152698533291;MED-1{core}:0.151237486538;XCPE1{core}:0.141717855544;SP1:0.138162010922;HMGA1,2:0.112489568083;TFAP2B:0.0777992501212;PRRX1,2:0.0711636900206;NHLH1,2:0.0460812310327;KLF4:0.0389773572323;EVI1:0.0305374335792;PAX2:0.0236166919577;NR1H4:0.0220958251639;POU5F1:0.0127981022871;JUN:0.00573110345848;PAX8:-0.00442478466544;FOX{I1,J2}:-0.00752434445541;PPARG:-0.0135588645663;ATF5_CREB3:-0.0162087191191;NANOG{mouse}:-0.016474974273;ESR1:-0.0174511757676;TBP:-0.0242640239623;ZBTB6:-0.0301561990449;TAL1_TCF{3,4,12}:-0.0404586074943;TGIF1:-0.0502859654578;TFDP1:-0.0621635387892;SOX5:-0.0934909685956;NR6A1:-0.0973456204163;ATF6:-0.107817563754;POU2F1..3:-0.133844273065;ZNF423:-0.150460693786;MTF1:-0.165819062237;FOXN1:-0.184320799916;NR3C1:-0.185191334874;PDX1:-0.195561711787;PATZ1:-0.199475568457;OCT4_SOX2{dimer}:-0.249863462492;HOX{A4,D4}:-0.256566449931;SREBF1,2:-0.260913058951;RXR{A,B,G}:-0.308058083565;ZNF384:-0.311550328618;BPTF:-0.313655429378;ATF2:-0.321298400379;MZF1:-0.325332764077;ATF4:-0.336923676853;MEF2{A,B,C,D}:-0.34157236227;ESRRA:-0.342026339197;HES1:-0.352873449716;CRX:-0.362929725293;GFI1B:-0.370145780155;FOXP3:-0.388416456966;EBF1:-0.395677076287;SOX17:-0.437737451071;NFE2L1:-0.468072586195;ALX1:-0.482280997176;AR:-0.48716369273;NR5A1,2:-0.488048661762;UFEwm:-0.5101632246;NKX2-2,8:-0.53514220858;HBP1_HMGB_SSRP1_UBTF:-0.551546780638;ELF1,2,4:-0.553077980208;MYFfamily:-0.58009259543;EN1,2:-0.581541005721;HLF:-0.617361521342;EGR1..3:-0.631348948028;PRDM1:-0.63263529839;SPIB:-0.635150753205;HOX{A5,B5}:-0.635849773321;CREB1:-0.669865523097;FOSL2:-0.689369169092;FOS_FOS{B,L1}_JUN{B,D}:-0.692448146845;HSF1,2:-0.69361342099;GZF1:-0.709751995916;GTF2I:-0.710683704662;BACH2:-0.710731122868;IKZF1:-0.733515205929;NFKB1_REL_RELA:-0.741060682864;MAZ:-0.74251714772;NFE2:-0.758284837357;TLX2:-0.772589735793;ZIC1..3:-0.777458687355;RUNX1..3:-0.799035380619;FOXO1,3,4:-0.807287128327;TP53:-0.821373252862;TFAP2{A,C}:-0.822705139778;GATA4:-0.827052559352;EP300:-0.836420696909;LEF1_TCF7_TCF7L1,2:-0.848912072238;SPI1:-0.88682737183;IRF7:-0.905255677082;RORA:-0.906524761771;T:-0.919446912603;TBX4,5:-0.926417828147;TFCP2:-0.948865368707;TLX1..3_NFIC{dimer}:-0.953906724176;GLI1..3:-0.95429548788;SOX2:-0.965552088373;XBP1:-0.975157915048;NFIX:-1.00767614957;ETS1,2:-1.03402819027;IRF1,2:-1.03543640495;POU3F1..4:-1.04909948896;PAX1,9:-1.05116119452;ZNF148:-1.07633551981;GTF2A1,2:-1.09568606597;HOXA9_MEIS1:-1.11417415372;NKX3-2:-1.16064303117;DMAP1_NCOR{1,2}_SMARC:-1.16304042871;STAT1,3:-1.17780569201;MYBL2:-1.19145590247;SMAD1..7,9:-1.22352126812;ALX4:-1.2256591222;NFE2L2:-1.24928352655;STAT2,4,6:-1.2965853645;MAFB:-1.33197402571;CEBPA,B_DDIT3:-1.35034418487;SRF:-1.36853323411;GCM1,2:-1.3720119923;SPZ1:-1.38663333265;HMX1:-1.40349225878;TEAD1:-1.43925883843;NFIL3:-1.47975592391;RXRA_VDR{dimer}:-1.48665734874;TFAP4:-1.52320267986;ZNF238:-1.74848635338;NFATC1..3:-2.20567967264 | |top_motifs=VSX1,2:3.6507915571;HNF1A:3.1498475594;NANOG:3.12561698813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.75106013707;POU6F1:2.38449675319;SNAI1..3:2.35943060792;YY1:2.35147076981;FOXA2:2.27013025185;NKX6-1,2:2.20973688567;bHLH_family:2.1684821406;ZEB1:2.16413114166;LHX3,4:2.08742180018;NRF1:2.00285672862;DBP:1.99998361048;HOX{A6,A7,B6,B7}:1.97302982241;RFX2..5_RFXANK_RFXAP:1.96046980567;PITX1..3:1.94342486026;MYOD1:1.91803463521;RFX1:1.88877834026;HNF4A_NR2F1,2:1.71347563244;LMO2:1.67328448416;ONECUT1,2:1.58445765137;NKX2-1,4:1.53247801283;FOXM1:1.52003199962;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.44593593011;ADNP_IRX_SIX_ZHX:1.38237745633;FOXP1:1.3635665031;FOX{D1,D2}:1.28250143012;RBPJ:1.26898436674;AIRE:1.23633011907;ARID5B:1.2173482481;E2F1..5:1.16299780872;TEF:1.05258734002;CDX1,2,4:1.02824735568;FOX{F1,F2,J1}:0.956301349771;NKX3-1:0.954751730619;REST:0.953699687586;ZBTB16:0.944010007105;NFY{A,B,C}:0.943688621799;ZNF143:0.926189635774;NKX2-3_NKX2-5:0.885387081031;GFI1:0.832564408457;ELK1,4_GABP{A,B1}:0.81522828784;FOXL1:0.797100543828;ZFP161:0.795061673971;SOX{8,9,10}:0.750819874526;PAX4:0.696089374067;PBX1:0.674819081257;TOPORS:0.674034147644;MYB:0.559919970767;POU1F1:0.530997751919;CUX2:0.498105439025;PAX5:0.47247391656;AHR_ARNT_ARNT2:0.428693851096;GATA6:0.383237366351;HAND1,2:0.363494126772;PAX3,7:0.333568703665;HIC1:0.324761001303;CDC5L:0.256756317659;IKZF2:0.256481899415;RREB1:0.255607793324;MTE{core}:0.251578308206;BREu{core}:0.24506342441;FOXQ1:0.2346196994;PAX6:0.222763904326;STAT5{A,B}:0.214454500849;FOXD3:0.213282870294;HIF1A:0.152698533291;MED-1{core}:0.151237486538;XCPE1{core}:0.141717855544;SP1:0.138162010922;HMGA1,2:0.112489568083;TFAP2B:0.0777992501212;PRRX1,2:0.0711636900206;NHLH1,2:0.0460812310327;KLF4:0.0389773572323;EVI1:0.0305374335792;PAX2:0.0236166919577;NR1H4:0.0220958251639;POU5F1:0.0127981022871;JUN:0.00573110345848;PAX8:-0.00442478466544;FOX{I1,J2}:-0.00752434445541;PPARG:-0.0135588645663;ATF5_CREB3:-0.0162087191191;NANOG{mouse}:-0.016474974273;ESR1:-0.0174511757676;TBP:-0.0242640239623;ZBTB6:-0.0301561990449;TAL1_TCF{3,4,12}:-0.0404586074943;TGIF1:-0.0502859654578;TFDP1:-0.0621635387892;SOX5:-0.0934909685956;NR6A1:-0.0973456204163;ATF6:-0.107817563754;POU2F1..3:-0.133844273065;ZNF423:-0.150460693786;MTF1:-0.165819062237;FOXN1:-0.184320799916;NR3C1:-0.185191334874;PDX1:-0.195561711787;PATZ1:-0.199475568457;OCT4_SOX2{dimer}:-0.249863462492;HOX{A4,D4}:-0.256566449931;SREBF1,2:-0.260913058951;RXR{A,B,G}:-0.308058083565;ZNF384:-0.311550328618;BPTF:-0.313655429378;ATF2:-0.321298400379;MZF1:-0.325332764077;ATF4:-0.336923676853;MEF2{A,B,C,D}:-0.34157236227;ESRRA:-0.342026339197;HES1:-0.352873449716;CRX:-0.362929725293;GFI1B:-0.370145780155;FOXP3:-0.388416456966;EBF1:-0.395677076287;SOX17:-0.437737451071;NFE2L1:-0.468072586195;ALX1:-0.482280997176;AR:-0.48716369273;NR5A1,2:-0.488048661762;UFEwm:-0.5101632246;NKX2-2,8:-0.53514220858;HBP1_HMGB_SSRP1_UBTF:-0.551546780638;ELF1,2,4:-0.553077980208;MYFfamily:-0.58009259543;EN1,2:-0.581541005721;HLF:-0.617361521342;EGR1..3:-0.631348948028;PRDM1:-0.63263529839;SPIB:-0.635150753205;HOX{A5,B5}:-0.635849773321;CREB1:-0.669865523097;FOSL2:-0.689369169092;FOS_FOS{B,L1}_JUN{B,D}:-0.692448146845;HSF1,2:-0.69361342099;GZF1:-0.709751995916;GTF2I:-0.710683704662;BACH2:-0.710731122868;IKZF1:-0.733515205929;NFKB1_REL_RELA:-0.741060682864;MAZ:-0.74251714772;NFE2:-0.758284837357;TLX2:-0.772589735793;ZIC1..3:-0.777458687355;RUNX1..3:-0.799035380619;FOXO1,3,4:-0.807287128327;TP53:-0.821373252862;TFAP2{A,C}:-0.822705139778;GATA4:-0.827052559352;EP300:-0.836420696909;LEF1_TCF7_TCF7L1,2:-0.848912072238;SPI1:-0.88682737183;IRF7:-0.905255677082;RORA:-0.906524761771;T:-0.919446912603;TBX4,5:-0.926417828147;TFCP2:-0.948865368707;TLX1..3_NFIC{dimer}:-0.953906724176;GLI1..3:-0.95429548788;SOX2:-0.965552088373;XBP1:-0.975157915048;NFIX:-1.00767614957;ETS1,2:-1.03402819027;IRF1,2:-1.03543640495;POU3F1..4:-1.04909948896;PAX1,9:-1.05116119452;ZNF148:-1.07633551981;GTF2A1,2:-1.09568606597;HOXA9_MEIS1:-1.11417415372;NKX3-2:-1.16064303117;DMAP1_NCOR{1,2}_SMARC:-1.16304042871;STAT1,3:-1.17780569201;MYBL2:-1.19145590247;SMAD1..7,9:-1.22352126812;ALX4:-1.2256591222;NFE2L2:-1.24928352655;STAT2,4,6:-1.2965853645;MAFB:-1.33197402571;CEBPA,B_DDIT3:-1.35034418487;SRF:-1.36853323411;GCM1,2:-1.3720119923;SPZ1:-1.38663333265;HMX1:-1.40349225878;TEAD1:-1.43925883843;NFIL3:-1.47975592391;RXRA_VDR{dimer}:-1.48665734874;TFAP4:-1.52320267986;ZNF238:-1.74848635338;NFATC1..3:-2.20567967264 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10589-108D4;search_select_hide=table117:FF:10589-108D4 | |||
}} | }} | ||
Latest revision as of 14:30, 3 June 2020
| Name: | argyrophil small cell carcinoma cell line:TC-YIK |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11725 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11725
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11725
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.806 |
| 10 | 10 | 0.466 |
| 100 | 100 | 0.354 |
| 101 | 101 | 0.978 |
| 102 | 102 | 0.628 |
| 103 | 103 | 0.158 |
| 104 | 104 | 0.375 |
| 105 | 105 | 0.58 |
| 106 | 106 | 2.74761e-5 |
| 107 | 107 | 0.0104 |
| 108 | 108 | 0.997 |
| 109 | 109 | 0.536 |
| 11 | 11 | 0.37 |
| 110 | 110 | 0.434 |
| 111 | 111 | 0.509 |
| 112 | 112 | 0.419 |
| 113 | 113 | 0.832 |
| 114 | 114 | 0.128 |
| 115 | 115 | 0.814 |
| 116 | 116 | 0.448 |
| 117 | 117 | 0.724 |
| 118 | 118 | 0.73 |
| 119 | 119 | 0.24 |
| 12 | 12 | 0.967 |
| 120 | 120 | 0.816 |
| 121 | 121 | 0.656 |
| 122 | 122 | 0.0818 |
| 123 | 123 | 0.385 |
| 124 | 124 | 0.495 |
| 125 | 125 | 0.92 |
| 126 | 126 | 0.97 |
| 127 | 127 | 0.112 |
| 128 | 128 | 0.0177 |
| 129 | 129 | 0.395 |
| 13 | 13 | 0.356 |
| 130 | 130 | 0.385 |
| 131 | 131 | 0.573 |
| 132 | 132 | 0.325 |
| 133 | 133 | 0.358 |
| 134 | 134 | 0.612 |
| 135 | 135 | 0.0858 |
| 136 | 136 | 0.489 |
| 137 | 137 | 0.355 |
| 138 | 138 | 0.982 |
| 139 | 139 | 0.487 |
| 14 | 14 | 0.615 |
| 140 | 140 | 0.985 |
| 141 | 141 | 0.552 |
| 142 | 142 | 0.579 |
| 143 | 143 | 5.59403e-4 |
| 144 | 144 | 0.103 |
| 145 | 145 | 0.239 |
| 146 | 146 | 0.595 |
| 147 | 147 | 0.419 |
| 148 | 148 | 0.337 |
| 149 | 149 | 0.114 |
| 15 | 15 | 0.431 |
| 150 | 150 | 0.242 |
| 151 | 151 | 0.25 |
| 152 | 152 | 0.0111 |
| 153 | 153 | 0.629 |
| 154 | 154 | 0.564 |
| 155 | 155 | 0.325 |
| 156 | 156 | 0.958 |
| 157 | 157 | 0.589 |
| 158 | 158 | 0.996 |
| 159 | 159 | 0.268 |
| 16 | 16 | 0.51 |
| 160 | 160 | 0.815 |
| 161 | 161 | 0.923 |
| 162 | 162 | 0.596 |
| 163 | 163 | 0.124 |
| 164 | 164 | 0.577 |
| 165 | 165 | 0.256 |
| 166 | 166 | 0.394 |
| 167 | 167 | 0.454 |
| 168 | 168 | 0.193 |
| 169 | 169 | 0.026 |
| 17 | 17 | 0.397 |
| 18 | 18 | 0.014 |
| 19 | 19 | 0.169 |
| 2 | 2 | 0.502 |
| 20 | 20 | 0.427 |
| 21 | 21 | 0.478 |
| 22 | 22 | 0.0612 |
| 23 | 23 | 0.00241 |
| 24 | 24 | 0.136 |
| 25 | 25 | 0.669 |
| 26 | 26 | 0.683 |
| 27 | 27 | 0.498 |
| 28 | 28 | 0.964 |
| 29 | 29 | 0.615 |
| 3 | 3 | 0.429 |
| 30 | 30 | 0.256 |
| 31 | 31 | 0.589 |
| 32 | 32 | 0.0116 |
| 33 | 33 | 0.796 |
| 34 | 34 | 0.262 |
| 35 | 35 | 0.587 |
| 36 | 36 | 0.45 |
| 37 | 37 | 0.171 |
| 38 | 38 | 0.358 |
| 39 | 39 | 0.202 |
| 4 | 4 | 0.816 |
| 40 | 40 | 0.907 |
| 41 | 41 | 0.0543 |
| 42 | 42 | 0.515 |
| 43 | 43 | 0.118 |
| 44 | 44 | 0.395 |
| 45 | 45 | 0.216 |
| 46 | 46 | 0.233 |
| 47 | 47 | 0.727 |
| 48 | 48 | 0.842 |
| 49 | 49 | 0.292 |
| 5 | 5 | 0.248 |
| 50 | 50 | 0.543 |
| 51 | 51 | 0.366 |
| 52 | 52 | 0.102 |
| 53 | 53 | 0.768 |
| 54 | 54 | 0.304 |
| 55 | 55 | 0.0845 |
| 56 | 56 | 0.889 |
| 57 | 57 | 0.962 |
| 58 | 58 | 0.693 |
| 59 | 59 | 0.0548 |
| 6 | 6 | 0.693 |
| 60 | 60 | 0.0145 |
| 61 | 61 | 0.989 |
| 62 | 62 | 0.345 |
| 63 | 63 | 0.151 |
| 64 | 64 | 0.761 |
| 65 | 65 | 0.0797 |
| 66 | 66 | 0.811 |
| 67 | 67 | 0.403 |
| 68 | 68 | 0.79 |
| 69 | 69 | 0.909 |
| 7 | 7 | 0.679 |
| 70 | 70 | 0.0854 |
| 71 | 71 | 0.267 |
| 72 | 72 | 0.153 |
| 73 | 73 | 0.0745 |
| 74 | 74 | 0.169 |
| 75 | 75 | 0.716 |
| 76 | 76 | 0.734 |
| 77 | 77 | 0.311 |
| 78 | 78 | 0.486 |
| 79 | 79 | 0.2 |
| 8 | 8 | 0.781 |
| 80 | 80 | 0.218 |
| 81 | 81 | 0.189 |
| 82 | 82 | 0.684 |
| 83 | 83 | 0.0512 |
| 84 | 84 | 0.96 |
| 85 | 85 | 0.0137 |
| 86 | 86 | 0.319 |
| 87 | 87 | 0.691 |
| 88 | 88 | 0.474 |
| 89 | 89 | 0.192 |
| 9 | 9 | 0.0581 |
| 90 | 90 | 0.167 |
| 91 | 91 | 0.156 |
| 92 | 92 | 0.316 |
| 93 | 93 | 0.469 |
| 94 | 94 | 0.0685 |
| 95 | 95 | 0.614 |
| 96 | 96 | 0.354 |
| 97 | 97 | 0.874 |
| 98 | 98 | 0.524 |
| 99 | 99 | 0.877 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11725
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0002535 epithelial cell of cervix
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
FF:0101967 cervical cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002535 (epithelial cell of cervix)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
4362 (cervical cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0000483 (epithelium)
0003134 (female reproductive organ)
0000479 (tissue)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0006955 (uterine epithelium)
0004801 (cervix epithelium)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101967 (cervical cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
