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{{f5samples
{{f5samples
|id=10589
|DRA_sample_Accession=CAGE@SAMD00005178
|name=argyrophil small cell carcinoma cell line:TC-YIK
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005178
|sample_id=FF:10589-108D4
|accession_numbers=CAGE;DRX007829;DRR008701;DRZ000126;DRZ001511;DRZ011476;DRZ012861
|rna_tube_id=108D4
|accession_numbers_RNASeq=RNA-Seq;DRX057130;DRR062889;DRZ007965
|rna_box=108
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000002,UBERON:0000995,UBERON:0000483,UBERON:0003134,UBERON:0000479,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0006955,UBERON:0004801,UBERON:0003100,UBERON:0000474
|rna_position=D4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002535
|sample_cell_lot=
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:4362
|sample_cell_catalog=RCB0443
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0101967
|sample_company=RIKEN Bioresource centre
|comment=
|rna_lot_number=
|created_by=
|rna_catalog_number=
|creation_date=
|sample_species=Human (Homo sapiens)
|data_phase=2
|sample_strain=
|datafreeze_phase=2
|sample_dev_stage=
|def=
|sample_tissue=cervix
|expression_enrichment_score=chr2:182545234..182545252,-!p1@NEUROD1!2.75!558.28!NEUROD1;;chr20:20348740..20348757,+!p1@INSM1!2.72!518.73!INSM1;;chrX:25034067..25034088,-!p1@ARX!2.38!236.56!ARX;;chr8:41508327..41508355,-!p1@NKX6-3!2.34!217.92!NKX6-3;;chr7:73038839..73038862,-!p1@MLXIPL!2.29!193.99!MLXIPL;;chr4:57547454..57547469,-!p1@HOPX!2.22!165.02!HOPX;;chr6:117198400..117198441,+!p1@RFX6!2.12!129.75!RFX6;;chr13:28494130..28494168,+!p1@PDX1!2.02!104.30!PDX1;;chr13:72441315..72441454,-!p1@DACH1!1.99!189.20!DACH1;;chr11:31839488..31839515,-!p3@PAX6!1.99!95.99!PAX6;;chr5:50679228..50679288,+!p1@ISL1!1.95!88.43!ISL1;;chr7:127258139..127258173,-!p@chr7:127258139..127258173,-!1.95!87.67!PAX4;;chr18:55102628..55102646,+!p2@ONECUT2!1.92!81.88!ONECUT2;;chr8:76319876..76319926,+!p1@HNF4G!1.87!73.82!HNF4G;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.52!HNF4A;;chr11:31832658..31832681,-!p1@PAX6!1.83!66.01!PAX6;;chr18:55102598..55102623,+!p1@ONECUT2!1.80!61.47!ONECUT2;;chr20:22564895..22564910,-!p1@FOXA2!1.78!58.95!FOXA2;;chr2:219849897..219849928,-!p2@FEV!1.78!58.70!FEV;;chr1:214161272..214161322,+!p1@PROX1!1.75!76.84!PROX1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.61!39.55!SEBOX;;chr13:72441506..72441562,-!p3@DACH1!1.59!38.29!DACH1;;chr11:16419037..16419064,-!p3@SOX6!1.59!37.54!SOX6;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.51!ELF3;;chr7:156803329..156803362,-!p1@MNX1!1.54!34.01!MNX1;;chr6:10412392..10412409,-!p4@TFAP2A!1.53!37.54!TFAP2A;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.53!33.26!SEBOX;;chr8:53166899..53166914,-!p3@ST18!1.53!33.00!ST18;;chr8:53162037..53162058,-!p5@ST18!1.52!32.25!ST18;;chr16:85932760..85932775,+!p1@IRF8!1.51!31.24!IRF8;;chr11:61520075..61520136,+!p1@C11orf9!1.49!61.98!C11orf9;;chr6:10412600..10412637,-!p1@TFAP2A!1.49!49.38!TFAP2A;;chr1:10754477..10754517,-!p1@CASZ1!1.49!48.62!CASZ1;;chr3:157824202..157824211,-!p3@SHOX2!1.49!30.23!SHOX2;;chr11:31832610..31832639,-!p5@PAX6!1.49!29.73!PAX6;;chr14:33403881..33403924,+!p1@NPAS3!1.46!27.96!NPAS3;;chr13:72441074..72441172,-!p2@DACH1!1.43!25.95!DACH1;;chr12:103351444..103351461,+!p1@ASCL1!1.39!23.68!ASCL1;;chr7:127258190..127258201,-!p@chr7:127258190..127258201,-!1.37!22.67!PAX4;;chr7:127258120..127258138,-!p@chr7:127258120..127258138,-!1.37!22.42!PAX4;;chr11:31832581..31832601,-!p7@PAX6!1.37!22.42!PAX6;;chr20:22565370..22565388,-!p2@FOXA2!1.36!21.67!FOXA2;;chr11:2292226..2292270,-!p1@ASCL2!1.35!21.16!ASCL2;;chr8:41508303..41508308,-!p2@NKX6-3!1.34!20.66!NKX6-3;;chr2:239148671..239148686,-!p1@HES6!1.31!70.29!HES6;;chr17:53342311..53342400,+!p1@HLF!1.30!21.92!HLF;;chr1:27240455..27240474,-!p1@NR0B2!1.30!19.15!NR0B2;;chr2:242556880..242556899,-!p5@THAP4!1.30!19.15!THAP4;;chr11:31832807..31832823,-!p4@PAX6!1.30!18.89!PAX6;;chr1:209979467..209979494,-!p1@IRF6!1.29!20.91!IRF6;;chr8:11561684..11561751,+!p1@GATA4!1.28!17.89!GATA4;;chr13:41593493..41593506,-!p8@ELF1!1.27!17.64!ELF1;;chr6:19837592..19837621,+!p1@ID4!1.26!103.54!ID4;;chr13:28494109..28494122,+!p2@PDX1!1.26!17.13!PDX1;;chr7:27213893..27213954,-!p1@HOXA10!1.25!16.63!HOXA10;;chr4:149363494..149363543,-!p1@NR3C2!1.24!16.38!NR3C2;;chr1:201979703..201979721,+!p2@ELF3!1.23!15.87!ELF3;;chr7:73038867..73038878,-!p2@MLXIPL!1.23!15.87!MLXIPL;;chr11:31832862..31832884,-!p2@PAX6!1.18!14.11!PAX6;;chr13:28543285..28543314,-!p2@CDX2!1.18!14.11!CDX2;;chr5:50681985..50682031,+!p2@ISL1!1.17!13.86!ISL1;;chr1:165325006..165325012,-!p2@LMX1A!1.17!13.86!LMX1A;;chr11:31839453..31839462,-!p9@PAX6!1.16!13.35!PAX6;;chr13:28543431..28543487,-!p1@CDX2!1.15!13.10!CDX2;;chr17:46622440..46622477,-!p5@HOXB2!1.14!14.36!HOXB2;;chr2:242556900..242556916,-!p6@THAP4!1.13!12.60!THAP4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.13!12.60!ZBED1;;chr18:56940611..56940660,-!p1@RAX!1.13!12.34!RAX;;chr9:3525867..3525902,-!p3@RFX3!1.12!41.82!RFX3;;chr2:176994408..176994492,+!p1@HOXD8!1.12!12.09!HOXD8;;chr7:27219833..27219845,-!p7@HOXA10!1.12!12.09!HOXA10;;chr10:131762504..131762555,-!p1@EBF3!1.11!11.84!EBF3;;chr20:39317868..39317884,-!p1@MAFB!1.10!137.56!MAFB;;chr2:46524897..46524911,+!p2@EPAS1!1.10!32.75!EPAS1;;chr11:31832687..31832704,-!p6@PAX6!1.10!11.59!PAX6;;chr5:158526917..158526932,-!p1@EBF1!1.09!28.47!EBF1;;chr1:41827095..41827155,+!p1@FOXO6!1.08!14.86!FOXO6;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.08!11.09!POU3F3;;chr4:149363475..149363492,-!p2@NR3C2!1.08!11.09!NR3C2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.07!10.83!HOXC5;;chr3:157824437..157824459,-!p5@SHOX2!1.06!10.58!SHOX2;;chr16:67197654..67197716,+!p3@HSF4!1.05!10.33!HSF4;;chr2:182545282..182545294,-!p2@NEUROD1!1.04!10.08!NEUROD1;;chr13:37494275..37494304,-!p2@SMAD9!1.04!10.08!SMAD9;;chr5:124084493..124084524,-!p2@ZNF608!1.03!21.92!ZNF608;;chr2:182545296..182545307,-!p3@NEUROD1!1.03!9.83!NEUROD1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.02!20.41!ZNF395;;chr6:117198376..117198383,+!p2@RFX6!1.02!9.57!RFX6;;chr7:149471046..149471070,-!p4@ZNF467!1.02!9.57!ZNF467;;chr9:20382446..20382493,-!p4@MLLT3!1.02!9.57!MLLT3;;chr7:9961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|sample_donor(cell lot)=
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316
|sample_sex=female
|sample_age=31
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=1.85
|rna_od260/280=2.11
|sample_cell_type=unclassifiable
|sample_cell_line=TC-YIK
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=argyrophil small cell carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=78.01812
|rna_concentration=1.65996
|sample_note=
|profile_hcage=CNhs11725,LSID819,release009,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000002,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000474,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000990,UBERON:0000995,UBERON:0001062,UBERON:0001560,UBERON:0002050,UBERON:0002532,UBERON:0003100,UBERON:0003133,UBERON:0003134,UBERON:0003975,UBERON:0004120,UBERON:0004175,UBERON:0005156,UBERON:0005423,UBERON:0005795
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
|sample_description=
|fonse_cell_line=FF:0101120,FF:0101967
|fonse_cell_line=FF:0101120,FF:0101967
|fonse_cell_line_closure=FF:0101120,FF:0101967
|fonse_cell_line_closure=FF:0101120,FF:0101967
Line 66: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg38.nobarcode.ctss.bed.gz
|id=FF:10589-108D4
|is_a=CL:0002535;;EFO:0002091;;FF:0000210;;FF:0100297;;FF:0101967
|is_obsolete=
|library_id=CNhs11725
|library_id_phase_based=2:CNhs11725
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10589
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10589
|name=argyrophil small cell carcinoma cell line:TC-YIK
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11725,LSID819,release009,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0841565801503228,0.0975809997847489,-0.179781132408765,0.117210816171492,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0238859847610804,0,0,0,0.0487904998923745,0,0.25608592029341,0,0,0.111518020457847,0,0,0,0,0,0,0,0,0,0,0,0,-0.228294289697694,0.0975809997847489,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.0975809997847489,0.147482248994104,0,0,0.147130983023612,0,0,0,0,0,0,0,0,0.0975809997847489,0,0,0,0,0,0,0,0,0.0412380481419851,0.0487904998923745,0,0.0975809997847489,0,0,0,-0.140443645177397,0,0,0,0.059926269249047,0.131771934063091,0,0,0,0,0.343428712043505,0.331343614063706,0,0,0,0,0,0,0,0,0,0,0.244474610236709,0,0,0,0,0,0,0.124358437718145,0.177208995109508,0,0,-0.057439935027299,-0.0619424684363849,0,0,0.0975809997847489,0,0,0
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|rna_box=108
|rna_catalog_number=
|rna_concentration=1.65996
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.85
|rna_od260/280=2.11
|rna_position=D4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=108D4
|rna_weight_ug=78.01812
|rnaseq_library_id=RDhi10073
|sample_age=31
|sample_category=cell lines
|sample_cell_catalog=RCB0443
|sample_cell_line=TC-YIK
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=argyrophil small cell carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.6126786470618e-247!GO:0043226;organelle;1.78205504007087e-218!GO:0043229;intracellular organelle;5.2747508541334e-218!GO:0043231;intracellular membrane-bound organelle;7.0885230505836e-212!GO:0043227;membrane-bound organelle;1.18394234171253e-211!GO:0044422;organelle part;5.69342756259729e-170!GO:0044446;intracellular organelle part;1.49065700955785e-168!GO:0005737;cytoplasm;6.24023627714267e-166!GO:0044444;cytoplasmic part;2.74474769404046e-136!GO:0032991;macromolecular complex;3.46292946807651e-113!GO:0044237;cellular metabolic process;8.5252608697168e-98!GO:0044238;primary metabolic process;5.43339970673261e-96!GO:0030529;ribonucleoprotein complex;9.19032046380507e-91!GO:0044428;nuclear part;7.27254887325083e-85!GO:0043170;macromolecule metabolic process;8.49748235213157e-85!GO:0005634;nucleus;2.28106692171722e-82!GO:0005739;mitochondrion;2.87996407008564e-82!GO:0043233;organelle lumen;7.51558072129698e-81!GO:0031974;membrane-enclosed lumen;7.51558072129698e-81!GO:0003723;RNA binding;1.76357170417557e-73!GO:0043234;protein complex;9.52163322809555e-59!GO:0044429;mitochondrial part;3.41155309295561e-56!GO:0005840;ribosome;8.92070808304867e-56!GO:0031090;organelle membrane;2.31030200994654e-55!GO:0006396;RNA processing;3.28142921326946e-54!GO:0043283;biopolymer metabolic process;1.00868553753736e-49!GO:0006412;translation;1.0289346696626e-49!GO:0005515;protein binding;9.20382955777023e-49!GO:0031967;organelle envelope;4.9945288838254e-48!GO:0003735;structural constituent of ribosome;6.97237706185682e-48!GO:0031975;envelope;1.35680015798522e-47!GO:0015031;protein transport;3.60618608224224e-46!GO:0031981;nuclear lumen;4.24487191903778e-46!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.51530014148358e-46!GO:0033036;macromolecule localization;1.02716086329211e-45!GO:0009058;biosynthetic process;1.08126692743749e-45!GO:0010467;gene expression;2.9725893814548e-45!GO:0016043;cellular component organization and biogenesis;2.45104603278098e-44!GO:0016071;mRNA metabolic process;4.88472713260671e-44!GO:0044249;cellular biosynthetic process;5.9975549715172e-44!GO:0033279;ribosomal subunit;5.91059693990837e-42!GO:0008104;protein localization;1.76912395116909e-41!GO:0045184;establishment of protein localization;2.15894385523558e-41!GO:0009059;macromolecule biosynthetic process;2.11849287855006e-40!GO:0008380;RNA splicing;3.69463777492455e-40!GO:0019538;protein metabolic process;6.37182570840007e-40!GO:0006397;mRNA processing;5.89277777161214e-39!GO:0006996;organelle organization and biogenesis;4.65120888856633e-38!GO:0044260;cellular macromolecule metabolic process;1.48044750736641e-37!GO:0044267;cellular protein metabolic process;1.8924882972173e-36!GO:0043228;non-membrane-bound organelle;1.8924882972173e-36!GO:0043232;intracellular non-membrane-bound organelle;1.8924882972173e-36!GO:0046907;intracellular transport;1.24600919178447e-34!GO:0005740;mitochondrial envelope;1.5666868075555e-33!GO:0019866;organelle inner membrane;4.1214280377825e-33!GO:0006259;DNA metabolic process;6.35419737736588e-33!GO:0065003;macromolecular complex assembly;1.89093424551595e-32!GO:0005829;cytosol;2.82465477957467e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.03752307899377e-32!GO:0005743;mitochondrial inner membrane;7.44449237323893e-32!GO:0031966;mitochondrial membrane;1.71437190653962e-31!GO:0003676;nucleic acid binding;1.61885078920772e-30!GO:0005654;nucleoplasm;1.43143095241228e-29!GO:0005681;spliceosome;2.9435459147602e-29!GO:0022607;cellular component assembly;4.29655833207674e-29!GO:0000166;nucleotide binding;7.41172296609757e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.25768686040736e-28!GO:0006886;intracellular protein transport;3.8351030311499e-28!GO:0051649;establishment of cellular localization;4.29811502930702e-28!GO:0031980;mitochondrial lumen;1.28588842632245e-27!GO:0005759;mitochondrial matrix;1.28588842632245e-27!GO:0051641;cellular localization;3.12281394382432e-27!GO:0006119;oxidative phosphorylation;6.5952282921014e-25!GO:0044451;nucleoplasm part;6.31617233645746e-24!GO:0007049;cell cycle;8.05345713223086e-24!GO:0044455;mitochondrial membrane part;1.86477541224145e-23!GO:0012505;endomembrane system;2.72224013812822e-22!GO:0044445;cytosolic part;4.74177194200847e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.71899799502256e-22!GO:0016462;pyrophosphatase activity;6.06811549306468e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;8.01811986052778e-22!GO:0015935;small ribosomal subunit;1.04230321999511e-21!GO:0015934;large ribosomal subunit;2.10173838566179e-21!GO:0016070;RNA metabolic process;3.0150713373054e-21!GO:0017111;nucleoside-triphosphatase activity;9.56862988286693e-21!GO:0006974;response to DNA damage stimulus;3.33416047744891e-20!GO:0044265;cellular macromolecule catabolic process;5.09958406926272e-20!GO:0005694;chromosome;6.54046304089431e-20!GO:0006457;protein folding;7.89094327592484e-20!GO:0022618;protein-RNA complex assembly;8.82224397943936e-20!GO:0032553;ribonucleotide binding;1.34507713104351e-19!GO:0032555;purine ribonucleotide binding;1.34507713104351e-19!GO:0017076;purine nucleotide binding;2.45006600547907e-19!GO:0016874;ligase activity;3.69781622458562e-19!GO:0044248;cellular catabolic process;4.11930673041364e-19!GO:0051276;chromosome organization and biogenesis;9.1303755375168e-19!GO:0005746;mitochondrial respiratory chain;2.19391480093188e-18!GO:0006281;DNA repair;4.33409372697922e-18!GO:0008135;translation factor activity, nucleic acid binding;8.89278670762476e-18!GO:0005524;ATP binding;1.11143027316556e-17!GO:0032559;adenyl ribonucleotide binding;1.13210963123222e-17!GO:0006512;ubiquitin cycle;1.25457954905738e-17!GO:0016887;ATPase activity;1.81164034159158e-17!GO:0044427;chromosomal part;1.94025308290209e-17!GO:0030554;adenyl nucleotide binding;3.33906494478335e-17!GO:0042623;ATPase activity, coupled;3.37964668862659e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.52708298027551e-17!GO:0005761;mitochondrial ribosome;4.87936631358144e-17!GO:0000313;organellar ribosome;4.87936631358144e-17!GO:0022402;cell cycle process;4.90491619081351e-17!GO:0006511;ubiquitin-dependent protein catabolic process;5.72038524562043e-17!GO:0019941;modification-dependent protein catabolic process;8.10634817038863e-17!GO:0043632;modification-dependent macromolecule catabolic process;8.10634817038863e-17!GO:0044257;cellular protein catabolic process;1.24793024993807e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.25553708737204e-16!GO:0003954;NADH dehydrogenase activity;1.25553708737204e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.25553708737204e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.31555573575988e-16!GO:0009057;macromolecule catabolic process;3.03389391414397e-16!GO:0051186;cofactor metabolic process;3.49147576557481e-16!GO:0005730;nucleolus;5.72337571524575e-16!GO:0051082;unfolded protein binding;7.57641254275649e-16!GO:0043285;biopolymer catabolic process;1.9723342452889e-15!GO:0005635;nuclear envelope;2.11377435016661e-15!GO:0042775;organelle ATP synthesis coupled electron transport;4.7292906774544e-15!GO:0042773;ATP synthesis coupled electron transport;4.7292906774544e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.66369075584745e-15!GO:0031965;nuclear membrane;9.7768498391855e-15!GO:0005794;Golgi apparatus;1.00307828461338e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.6860648020577e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.83110178673533e-14!GO:0000375;RNA splicing, via transesterification reactions;1.83110178673533e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.83110178673533e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.2311433940731e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.24289108164226e-14!GO:0045271;respiratory chain complex I;2.24289108164226e-14!GO:0005747;mitochondrial respiratory chain complex I;2.24289108164226e-14!GO:0005783;endoplasmic reticulum;4.05577430462675e-14!GO:0008134;transcription factor binding;4.47511149365867e-14!GO:0009719;response to endogenous stimulus;5.01469206110128e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;5.80372940341989e-14!GO:0044432;endoplasmic reticulum part;6.79192967405707e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.21018401888295e-14!GO:0000278;mitotic cell cycle;1.06555117842488e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.44257032703085e-13!GO:0016604;nuclear body;1.7314678178658e-13!GO:0030163;protein catabolic process;2.35352376965954e-13!GO:0006732;coenzyme metabolic process;2.41024995101871e-13!GO:0006323;DNA packaging;2.43533250982827e-13!GO:0006605;protein targeting;2.61103221000325e-13!GO:0042254;ribosome biogenesis and assembly;3.95617697824249e-13!GO:0004386;helicase activity;7.95460304300493e-13!GO:0022403;cell cycle phase;8.00987693807759e-13!GO:0003743;translation initiation factor activity;1.36120508344389e-12!GO:0006260;DNA replication;1.37329945783959e-12!GO:0044453;nuclear membrane part;1.51037292470917e-12!GO:0006413;translational initiation;2.05048035859341e-12!GO:0048193;Golgi vesicle transport;2.8835150043589e-12!GO:0006446;regulation of translational initiation;2.96336288375278e-12!GO:0016192;vesicle-mediated transport;5.12107873199255e-12!GO:0005643;nuclear pore;5.43622204584335e-12!GO:0009056;catabolic process;6.75504644863274e-12!GO:0006163;purine nucleotide metabolic process;1.269796524287e-11!GO:0009259;ribonucleotide metabolic process;1.28788668546052e-11!GO:0051301;cell division;1.54888031638637e-11!GO:0009055;electron carrier activity;1.75848093531396e-11!GO:0043412;biopolymer modification;2.08103006506325e-11!GO:0050657;nucleic acid transport;2.20485883741658e-11!GO:0051236;establishment of RNA localization;2.20485883741658e-11!GO:0050658;RNA transport;2.20485883741658e-11!GO:0006403;RNA localization;2.23465858110697e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.48816389398741e-11!GO:0048770;pigment granule;3.50642544809391e-11!GO:0042470;melanosome;3.50642544809391e-11!GO:0019829;cation-transporting ATPase activity;4.84851829733177e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.86883402862383e-11!GO:0000279;M phase;5.17512117282911e-11!GO:0016607;nuclear speck;6.37113928644737e-11!GO:0015630;microtubule cytoskeleton;6.96485362761402e-11!GO:0006399;tRNA metabolic process;7.75958870888143e-11!GO:0009150;purine ribonucleotide metabolic process;8.71550511228196e-11!GO:0006164;purine nucleotide biosynthetic process;9.21038414900058e-11!GO:0000087;M phase of mitotic cell cycle;9.30462677931162e-11!GO:0005789;endoplasmic reticulum membrane;1.02407244324448e-10!GO:0008565;protein transporter activity;1.26006705562345e-10!GO:0009060;aerobic respiration;1.84402385836705e-10!GO:0065002;intracellular protein transport across a membrane;1.85919106469002e-10!GO:0009260;ribonucleotide biosynthetic process;1.90547474934578e-10!GO:0007067;mitosis;2.15559175142646e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.49414557995608e-10!GO:0045333;cellular respiration;4.6366843218473e-10!GO:0009199;ribonucleoside triphosphate metabolic process;6.17457123438133e-10!GO:0009152;purine ribonucleotide biosynthetic process;6.32876635479231e-10!GO:0046930;pore complex;6.51122982800594e-10!GO:0009141;nucleoside triphosphate metabolic process;7.24138191463652e-10!GO:0006464;protein modification process;9.68243581684583e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.24429767139387e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.24429767139387e-09!GO:0051028;mRNA transport;1.31709866699358e-09!GO:0000785;chromatin;1.34714987655726e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.82373282349177e-09!GO:0016568;chromatin modification;1.83097571719524e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.90471287369588e-09!GO:0008026;ATP-dependent helicase activity;1.95167979294394e-09!GO:0006333;chromatin assembly or disassembly;1.97197969116876e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.15621615831132e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.15621615831132e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.30254607927459e-09!GO:0065004;protein-DNA complex assembly;2.92570423029578e-09!GO:0015986;ATP synthesis coupled proton transport;4.29254826909209e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.29254826909209e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.36217463193492e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.36217463193492e-09!GO:0005793;ER-Golgi intermediate compartment;4.43606485859395e-09!GO:0051188;cofactor biosynthetic process;5.18827160316211e-09!GO:0030532;small nuclear ribonucleoprotein complex;5.56466316346418e-09!GO:0003712;transcription cofactor activity;7.4557334650211e-09!GO:0006461;protein complex assembly;1.46527637881205e-08!GO:0006364;rRNA processing;1.87851642278119e-08!GO:0006913;nucleocytoplasmic transport;2.12619869461126e-08!GO:0046034;ATP metabolic process;2.3229054920773e-08!GO:0008639;small protein conjugating enzyme activity;2.7030703249682e-08!GO:0016072;rRNA metabolic process;2.83739232016579e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.97373374092796e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.97373374092796e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.97373374092796e-08!GO:0044431;Golgi apparatus part;3.08829975044705e-08!GO:0004842;ubiquitin-protein ligase activity;4.2148410290086e-08!GO:0006099;tricarboxylic acid cycle;4.2148410290086e-08!GO:0046356;acetyl-CoA catabolic process;4.2148410290086e-08!GO:0051169;nuclear transport;4.23399449716471e-08!GO:0043687;post-translational protein modification;4.43082494468769e-08!GO:0043566;structure-specific DNA binding;4.47593222818913e-08!GO:0015078;hydrogen ion transmembrane transporter activity;5.12257621811073e-08!GO:0006261;DNA-dependent DNA replication;5.7359758343442e-08!GO:0006084;acetyl-CoA metabolic process;5.7359758343442e-08!GO:0045045;secretory pathway;5.97210240550549e-08!GO:0006091;generation of precursor metabolites and energy;6.4568103761327e-08!GO:0016787;hydrolase activity;6.55528285426795e-08!GO:0006754;ATP biosynthetic process;6.97623194022217e-08!GO:0006753;nucleoside phosphate metabolic process;6.97623194022217e-08!GO:0043038;amino acid activation;8.02785841469473e-08!GO:0006418;tRNA aminoacylation for protein translation;8.02785841469473e-08!GO:0043039;tRNA aminoacylation;8.02785841469473e-08!GO:0009117;nucleotide metabolic process;1.05601561285403e-07!GO:0015980;energy derivation by oxidation of organic compounds;1.08562919794769e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.14489236559542e-07!GO:0019787;small conjugating protein ligase activity;1.14572557166117e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.35813492339198e-07!GO:0009108;coenzyme biosynthetic process;1.35813492339198e-07!GO:0016779;nucleotidyltransferase activity;1.36357294357714e-07!GO:0016881;acid-amino acid ligase activity;1.48979406823591e-07!GO:0003697;single-stranded DNA binding;1.51626363603787e-07!GO:0051726;regulation of cell cycle;1.64551033492317e-07!GO:0007005;mitochondrion organization and biogenesis;1.9709715482841e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.03845962884418e-07!GO:0032446;protein modification by small protein conjugation;2.04421395460769e-07!GO:0016853;isomerase activity;2.1845587986438e-07!GO:0000074;regulation of progression through cell cycle;2.41784173122327e-07!GO:0000245;spliceosome assembly;2.54317980569223e-07!GO:0031982;vesicle;2.56165351143105e-07!GO:0005768;endosome;3.179623591814e-07!GO:0031410;cytoplasmic vesicle;3.66738066838761e-07!GO:0006366;transcription from RNA polymerase II promoter;3.71167354466363e-07!GO:0016567;protein ubiquitination;4.80919341543247e-07!GO:0045259;proton-transporting ATP synthase complex;4.92357924569643e-07!GO:0006752;group transfer coenzyme metabolic process;6.14468122025751e-07!GO:0017038;protein import;6.38868134373359e-07!GO:0016740;transferase activity;7.28592495862515e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.55161080705054e-07!GO:0009109;coenzyme catabolic process;7.76706836463228e-07!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;8.41912560970118e-07!GO:0015399;primary active transmembrane transporter activity;8.41912560970118e-07!GO:0003724;RNA helicase activity;1.07113158957415e-06!GO:0006334;nucleosome assembly;1.4159226890959e-06!GO:0031497;chromatin assembly;1.51361053172381e-06!GO:0031988;membrane-bound vesicle;1.73319171776132e-06!GO:0005667;transcription factor complex;1.74150227203167e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.88742517183828e-06!GO:0051187;cofactor catabolic process;1.93559078871787e-06!GO:0000314;organellar small ribosomal subunit;2.24379091744146e-06!GO:0005763;mitochondrial small ribosomal subunit;2.24379091744146e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.36180253281218e-06!GO:0000151;ubiquitin ligase complex;2.4526723628084e-06!GO:0048475;coated membrane;2.47758672970673e-06!GO:0030117;membrane coat;2.47758672970673e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.73078245096836e-06!GO:0043623;cellular protein complex assembly;3.00588062158432e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.70816886364771e-06!GO:0030120;vesicle coat;3.75002220800398e-06!GO:0030662;coated vesicle membrane;3.75002220800398e-06!GO:0016491;oxidoreductase activity;4.00102249846043e-06!GO:0000139;Golgi membrane;4.73574748908007e-06!GO:0005874;microtubule;5.50482795776666e-06!GO:0005762;mitochondrial large ribosomal subunit;8.01680348238919e-06!GO:0000315;organellar large ribosomal subunit;8.01680348238919e-06!GO:0004298;threonine endopeptidase activity;9.24384380597349e-06!GO:0006613;cotranslational protein targeting to membrane;9.61184192811072e-06!GO:0003899;DNA-directed RNA polymerase activity;1.21125367869278e-05!GO:0044262;cellular carbohydrate metabolic process;1.3066195002892e-05!GO:0005657;replication fork;1.36535103410703e-05!GO:0043492;ATPase activity, coupled to movement of substances;1.37345495053925e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;1.7645406175193e-05!GO:0043021;ribonucleoprotein binding;2.6039547930233e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;2.60903515594493e-05!GO:0005813;centrosome;2.63633123586958e-05!GO:0008654;phospholipid biosynthetic process;3.03606608618032e-05!GO:0048471;perinuclear region of cytoplasm;3.03606608618032e-05!GO:0000775;chromosome, pericentric region;3.25408232251719e-05!GO:0007017;microtubule-based process;3.4859244323378e-05!GO:0006414;translational elongation;3.61102542108994e-05!GO:0005770;late endosome;3.7954584096155e-05!GO:0005798;Golgi-associated vesicle;3.81628951473436e-05!GO:0044440;endosomal part;4.11447993527067e-05!GO:0010008;endosome membrane;4.11447993527067e-05!GO:0008186;RNA-dependent ATPase activity;4.43231994970838e-05!GO:0005815;microtubule organizing center;4.54961200938305e-05!GO:0032940;secretion by cell;4.83351381304135e-05!GO:0003713;transcription coactivator activity;4.96342914283612e-05!GO:0008094;DNA-dependent ATPase activity;5.4957684028558e-05!GO:0016859;cis-trans isomerase activity;5.64052734733201e-05!GO:0009165;nucleotide biosynthetic process;5.64485338485446e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.841648602807e-05!GO:0006839;mitochondrial transport;6.33279121206833e-05!GO:0007051;spindle organization and biogenesis;6.52415346745653e-05!GO:0016363;nuclear matrix;6.91639364967579e-05!GO:0051427;hormone receptor binding;8.40581730728124e-05!GO:0016741;transferase activity, transferring one-carbon groups;0.000105705552724728!GO:0043284;biopolymer biosynthetic process;0.000129250577315464!GO:0030867;rough endoplasmic reticulum membrane;0.000133132990032062!GO:0004004;ATP-dependent RNA helicase activity;0.000142804493709843!GO:0006818;hydrogen transport;0.000148219157929255!GO:0003746;translation elongation factor activity;0.000149553897526593!GO:0015992;proton transport;0.000149553897526593!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000164266969037822!GO:0008168;methyltransferase activity;0.000165199204598634!GO:0035257;nuclear hormone receptor binding;0.000168144468360345!GO:0000228;nuclear chromosome;0.000170454912066859!GO:0003690;double-stranded DNA binding;0.000193865453475401!GO:0051168;nuclear export;0.000195717356334193!GO:0031072;heat shock protein binding;0.000198170204317428!GO:0006793;phosphorus metabolic process;0.000199347092327628!GO:0006796;phosphate metabolic process;0.000199347092327628!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000225194588678113!GO:0003729;mRNA binding;0.000230465204049642!GO:0007059;chromosome segregation;0.000248364872120575!GO:0016564;transcription repressor activity;0.000250145231246676!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000260194105532869!GO:0008033;tRNA processing;0.000264523544870292!GO:0005788;endoplasmic reticulum lumen;0.000281387320193142!GO:0051329;interphase of mitotic cell cycle;0.000295868887826642!GO:0031324;negative regulation of cellular metabolic process;0.000308975025611415!GO:0045786;negative regulation of progression through cell cycle;0.000317315586139871!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000319192833572662!GO:0019752;carboxylic acid metabolic process;0.000353432974066362!GO:0005525;GTP binding;0.000353432974066362!GO:0005819;spindle;0.000372311049170205!GO:0043681;protein import into mitochondrion;0.000397445268420509!GO:0044454;nuclear chromosome part;0.000425216669837113!GO:0050662;coenzyme binding;0.0004258504430182!GO:0000075;cell cycle checkpoint;0.000434361766370504!GO:0006612;protein targeting to membrane;0.000436216632197022!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000445517148080697!GO:0006082;organic acid metabolic process;0.000459664924079204!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000462280810842013!GO:0007010;cytoskeleton organization and biogenesis;0.000462280810842013!GO:0009892;negative regulation of metabolic process;0.00048621450271583!GO:0008022;protein C-terminus binding;0.00048621450271583!GO:0051325;interphase;0.000517598762658109!GO:0008610;lipid biosynthetic process;0.000540630415016749!GO:0051170;nuclear import;0.000562300233442143!GO:0006338;chromatin remodeling;0.000569202242113368!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000574094415853748!GO:0019222;regulation of metabolic process;0.000588439835490494!GO:0051539;4 iron, 4 sulfur cluster binding;0.000598317714765045!GO:0003714;transcription corepressor activity;0.000628632603238921!GO:0003684;damaged DNA binding;0.000657192024395254!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000668629976123884!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000668629976123884!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000668629976123884!GO:0051920;peroxiredoxin activity;0.00068988994473346!GO:0004527;exonuclease activity;0.000704117502339504!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000710716714571564!GO:0022890;inorganic cation transmembrane transporter activity;0.000721363159555273!GO:0000786;nucleosome;0.000729490589291846!GO:0006595;polyamine metabolic process;0.000752461815487867!GO:0016126;sterol biosynthetic process;0.000762793463550878!GO:0045454;cell redox homeostasis;0.000777377521652555!GO:0005975;carbohydrate metabolic process;0.000789231460367103!GO:0005791;rough endoplasmic reticulum;0.000790317965258389!GO:0050794;regulation of cellular process;0.000795840088598637!GO:0046467;membrane lipid biosynthetic process;0.000829674533620677!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000847551838454545!GO:0006626;protein targeting to mitochondrion;0.000889212828609866!GO:0051246;regulation of protein metabolic process;0.000896435971645757!GO:0000059;protein import into nucleus, docking;0.000905952895370918!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000932893742532626!GO:0015002;heme-copper terminal oxidase activity;0.000932893742532626!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000932893742532626!GO:0004129;cytochrome-c oxidase activity;0.000932893742532626!GO:0015631;tubulin binding;0.000934639865259784!GO:0006007;glucose catabolic process;0.000955565545426028!GO:0005769;early endosome;0.000959703700194592!GO:0005773;vacuole;0.000974979536377356!GO:0006606;protein import into nucleus;0.000985318245411697!GO:0046474;glycerophospholipid biosynthetic process;0.000987100492681599!GO:0032508;DNA duplex unwinding;0.000987100492681599!GO:0032392;DNA geometric change;0.000987100492681599!GO:0003711;transcription elongation regulator activity;0.000990106485865816!GO:0016310;phosphorylation;0.000990106485865816!GO:0000776;kinetochore;0.000990106485865816!GO:0016563;transcription activator activity;0.0010660461770021!GO:0019318;hexose metabolic process;0.0011401753436926!GO:0006302;double-strand break repair;0.00115792987480081!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00116541201712067!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00116541201712067!GO:0006402;mRNA catabolic process;0.001173590235669!GO:0030658;transport vesicle membrane;0.0011857536122444!GO:0031252;leading edge;0.0011857536122444!GO:0005684;U2-dependent spliceosome;0.00119043662948196!GO:0046489;phosphoinositide biosynthetic process;0.00123683314166244!GO:0005996;monosaccharide metabolic process;0.00124097689408223!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00129981689349746!GO:0051287;NAD binding;0.00134522308212074!GO:0048500;signal recognition particle;0.00134522308212074!GO:0005875;microtubule associated complex;0.00144091639261117!GO:0003702;RNA polymerase II transcription factor activity;0.00144721641293812!GO:0006891;intra-Golgi vesicle-mediated transport;0.00150835413521711!GO:0005048;signal sequence binding;0.0015285160471495!GO:0030176;integral to endoplasmic reticulum membrane;0.0015285160471495!GO:0051087;chaperone binding;0.00154430080413367!GO:0006383;transcription from RNA polymerase III promoter;0.00160575071403177!GO:0006006;glucose metabolic process;0.0016060503419988!GO:0006405;RNA export from nucleus;0.00169605718092189!GO:0033116;ER-Golgi intermediate compartment membrane;0.0017206249947329!GO:0032561;guanyl ribonucleotide binding;0.0017206249947329!GO:0019001;guanyl nucleotide binding;0.0017206249947329!GO:0051789;response to protein stimulus;0.00179859959571883!GO:0006986;response to unfolded protein;0.00179859959571883!GO:0003682;chromatin binding;0.00184702276626789!GO:0030133;transport vesicle;0.00186081877924798!GO:0006268;DNA unwinding during replication;0.00186889204431328!GO:0009116;nucleoside metabolic process;0.00191835875602751!GO:0051540;metal cluster binding;0.00208367052372452!GO:0051536;iron-sulfur cluster binding;0.00208367052372452!GO:0006066;alcohol metabolic process;0.00230706674730362!GO:0046483;heterocycle metabolic process;0.00246176632623593!GO:0005885;Arp2/3 protein complex;0.00252556677356008!GO:0043069;negative regulation of programmed cell death;0.00257742083143081!GO:0030660;Golgi-associated vesicle membrane;0.0026377439301153!GO:0030880;RNA polymerase complex;0.00266452420360578!GO:0000096;sulfur amino acid metabolic process;0.00266452420360578!GO:0051052;regulation of DNA metabolic process;0.00276073865049273!GO:0031124;mRNA 3'-end processing;0.0028681428789891!GO:0006352;transcription initiation;0.00295197656096769!GO:0008017;microtubule binding;0.00302762245623828!GO:0022406;membrane docking;0.00307919880841127!GO:0048278;vesicle docking;0.00307919880841127!GO:0006695;cholesterol biosynthetic process;0.00317172799375599!GO:0008312;7S RNA binding;0.00324174000125873!GO:0006401;RNA catabolic process;0.00335735750193322!GO:0042802;identical protein binding;0.0033645729712074!GO:0043066;negative regulation of apoptosis;0.00344865236491672!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00344865236491672!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00352727883883298!GO:0045047;protein targeting to ER;0.00352727883883298!GO:0019899;enzyme binding;0.00358579795604226!GO:0003678;DNA helicase activity;0.00359289183979028!GO:0048523;negative regulation of cellular process;0.00382523679676171!GO:0006904;vesicle docking during exocytosis;0.00382700405186936!GO:0030134;ER to Golgi transport vesicle;0.00413948764234799!GO:0016272;prefoldin complex;0.00421084673935151!GO:0030118;clathrin coat;0.00421172605448341!GO:0006096;glycolysis;0.00423339009975036!GO:0048037;cofactor binding;0.00440270855773093!GO:0035258;steroid hormone receptor binding;0.00440270855773093!GO:0007006;mitochondrial membrane organization and biogenesis;0.00463831922155525!GO:0012501;programmed cell death;0.00468983841470712!GO:0006378;mRNA polyadenylation;0.00488926263117356!GO:0006915;apoptosis;0.00502828446990925!GO:0003924;GTPase activity;0.00517387493643637!GO:0006284;base-excision repair;0.00559500983957532!GO:0005758;mitochondrial intermembrane space;0.00566210343342781!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00566210343342781!GO:0000428;DNA-directed RNA polymerase complex;0.00566210343342781!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00615774433248462!GO:0030127;COPII vesicle coat;0.00618248064930722!GO:0012507;ER to Golgi transport vesicle membrane;0.00618248064930722!GO:0009112;nucleobase metabolic process;0.00625685487274165!GO:0000323;lytic vacuole;0.00630446849109503!GO:0005764;lysosome;0.00630446849109503!GO:0006289;nucleotide-excision repair;0.006514614742261!GO:0000086;G2/M transition of mitotic cell cycle;0.00662206486108965!GO:0043022;ribosome binding;0.00668044189358988!GO:0031323;regulation of cellular metabolic process;0.00686538071102339!GO:0006310;DNA recombination;0.00687027183378022!GO:0006350;transcription;0.00707810414820629!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00748627334810239!GO:0046128;purine ribonucleoside metabolic process;0.00765300335837419!GO:0042278;purine nucleoside metabolic process;0.00765300335837419!GO:0005869;dynactin complex;0.00765467351354472!GO:0000209;protein polyubiquitination;0.00768224380994252!GO:0000339;RNA cap binding;0.00781796093531618!GO:0016251;general RNA polymerase II transcription factor activity;0.00782950902506563!GO:0006520;amino acid metabolic process;0.00789849601102916!GO:0006270;DNA replication initiation;0.00789849601102916!GO:0032259;methylation;0.00793550174071193!GO:0000049;tRNA binding;0.00802261920457456!GO:0007052;mitotic spindle organization and biogenesis;0.00807930592418197!GO:0006144;purine base metabolic process;0.00837035998583004!GO:0043596;nuclear replication fork;0.00842323874512223!GO:0000793;condensed chromosome;0.00850103400314443!GO:0007264;small GTPase mediated signal transduction;0.00852944994469103!GO:0004518;nuclease activity;0.00876034458242927!GO:0008097;5S rRNA binding;0.00898789496074564!GO:0031123;RNA 3'-end processing;0.00941621713913313!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00942960292561073!GO:0007050;cell cycle arrest;0.00948064781919796!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.00964047495756669!GO:0042393;histone binding;0.00971411162360548!GO:0000792;heterochromatin;0.00991035065657221!GO:0006672;ceramide metabolic process;0.00992695022649688!GO:0043130;ubiquitin binding;0.00998263365771502!GO:0032182;small conjugating protein binding;0.00998263365771502!GO:0005832;chaperonin-containing T-complex;0.00998767000556729!GO:0051252;regulation of RNA metabolic process;0.0100567701339854!GO:0030137;COPI-coated vesicle;0.0100909223628487!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0101471844975582!GO:0006497;protein amino acid lipidation;0.0103493763231688!GO:0044452;nucleolar part;0.0103647224112095!GO:0031647;regulation of protein stability;0.0104809430699631!GO:0046164;alcohol catabolic process;0.0105187306680973!GO:0031901;early endosome membrane;0.0106750910520456!GO:0031970;organelle envelope lumen;0.0107735856538851!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0109292564319213!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.011016948005615!GO:0005876;spindle microtubule;0.0115746285336354!GO:0031902;late endosome membrane;0.011667463484453!GO:0046365;monosaccharide catabolic process;0.0123153605200121!GO:0030663;COPI coated vesicle membrane;0.0124051450746881!GO:0030126;COPI vesicle coat;0.0124051450746881!GO:0006506;GPI anchor biosynthetic process;0.0124051450746881!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0128762650586626!GO:0008139;nuclear localization sequence binding;0.0135677201746379!GO:0006596;polyamine biosynthetic process;0.013878076999818!GO:0006354;RNA elongation;0.0139403264817507!GO:0008180;signalosome;0.0141001444654864!GO:0004576;oligosaccharyl transferase activity;0.0143965754642445!GO:0016584;nucleosome positioning;0.0145390544926571!GO:0008287;protein serine/threonine phosphatase complex;0.0149519582109573!GO:0030521;androgen receptor signaling pathway;0.0151581385094551!GO:0008219;cell death;0.0152002720673826!GO:0016265;death;0.0152002720673826!GO:0042981;regulation of apoptosis;0.0153580828062892!GO:0019783;small conjugating protein-specific protease activity;0.0154843473117711!GO:0006519;amino acid and derivative metabolic process;0.0155098385250323!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0155768557061095!GO:0046519;sphingoid metabolic process;0.0156056182561735!GO:0045947;negative regulation of translational initiation;0.0156584332082828!GO:0006505;GPI anchor metabolic process;0.0157012898823967!GO:0006643;membrane lipid metabolic process;0.0159062701855989!GO:0006376;mRNA splice site selection;0.016098762050694!GO:0000389;nuclear mRNA 3'-splice site recognition;0.016098762050694!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0163016296261056!GO:0043067;regulation of programmed cell death;0.0165942610346808!GO:0000287;magnesium ion binding;0.0168292541338859!GO:0007021;tubulin folding;0.016990280606503!GO:0005083;small GTPase regulator activity;0.0173633698233819!GO:0006916;anti-apoptosis;0.0175229270707705!GO:0006400;tRNA modification;0.0175696677567031!GO:0042158;lipoprotein biosynthetic process;0.0176861236840872!GO:0009303;rRNA transcription;0.0177368320517078!GO:0007093;mitotic cell cycle checkpoint;0.0178614632747091!GO:0009083;branched chain family amino acid catabolic process;0.018041440934988!GO:0004674;protein serine/threonine kinase activity;0.0181085999273002!GO:0000910;cytokinesis;0.0182906172203639!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0186736425252106!GO:0019843;rRNA binding;0.0186736425252106!GO:0006650;glycerophospholipid metabolic process;0.01875158344771!GO:0006220;pyrimidine nucleotide metabolic process;0.0188919590104279!GO:0019320;hexose catabolic process;0.0189426985145599!GO:0004843;ubiquitin-specific protease activity;0.0194767477923455!GO:0000118;histone deacetylase complex;0.0199776534468325!GO:0030119;AP-type membrane coat adaptor complex;0.0201058708980517!GO:0007040;lysosome organization and biogenesis;0.0205916164158345!GO:0005521;lamin binding;0.0222652112322962!GO:0004221;ubiquitin thiolesterase activity;0.022341904293443!GO:0031968;organelle outer membrane;0.0223486343960179!GO:0009451;RNA modification;0.0225325437847996!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0225381967658294!GO:0008250;oligosaccharyl transferase complex;0.0227839631817494!GO:0000178;exosome (RNase complex);0.0229192504603282!GO:0032200;telomere organization and biogenesis;0.0229544570994658!GO:0000723;telomere maintenance;0.0229544570994658!GO:0044275;cellular carbohydrate catabolic process;0.0230352548696008!GO:0009081;branched chain family amino acid metabolic process;0.0231674581606077!GO:0030135;coated vesicle;0.0235142834601652!GO:0008276;protein methyltransferase activity;0.0235142834601652!GO:0043631;RNA polyadenylation;0.023732631939486!GO:0030027;lamellipodium;0.0237676301739239!GO:0019867;outer membrane;0.0242586965793266!GO:0030131;clathrin adaptor complex;0.0243858954196949!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0247031840436098!GO:0050178;phenylpyruvate tautomerase activity;0.0248222015391669!GO:0004177;aminopeptidase activity;0.0255324270923801!GO:0043414;biopolymer methylation;0.0257584839004609!GO:0016481;negative regulation of transcription;0.0262771794753465!GO:0006611;protein export from nucleus;0.0264256292286882!GO:0048487;beta-tubulin binding;0.0277468355014958!GO:0005905;coated pit;0.0280157569169728!GO:0005637;nuclear inner membrane;0.0290099378418403!GO:0007088;regulation of mitosis;0.0296119872803083!GO:0040029;regulation of gene expression, epigenetic;0.0299141242247418!GO:0005777;peroxisome;0.0299141242247418!GO:0042579;microbody;0.0299141242247418!GO:0006275;regulation of DNA replication;0.0300336351399768!GO:0006607;NLS-bearing substrate import into nucleus;0.0300601868113273!GO:0030384;phosphoinositide metabolic process;0.0300601868113273!GO:0010468;regulation of gene expression;0.0300601868113273!GO:0003923;GPI-anchor transamidase activity;0.0302364824807396!GO:0016255;attachment of GPI anchor to protein;0.0302364824807396!GO:0042765;GPI-anchor transamidase complex;0.0302364824807396!GO:0043601;nuclear replisome;0.0302364824807396!GO:0030894;replisome;0.0302364824807396!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0306014914166465!GO:0031628;opioid receptor binding;0.0310106755607643!GO:0031852;mu-type opioid receptor binding;0.0310106755607643!GO:0032984;macromolecular complex disassembly;0.0310355886960449!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0312602259536559!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0313439096827795!GO:0044438;microbody part;0.0313439096827795!GO:0044439;peroxisomal part;0.0313439096827795!GO:0009119;ribonucleoside metabolic process;0.0317295938763935!GO:0016790;thiolester hydrolase activity;0.0319589954659213!GO:0046112;nucleobase biosynthetic process;0.032717032809574!GO:0042769;DNA damage response, detection of DNA damage;0.0328445711912579!GO:0005741;mitochondrial outer membrane;0.0330304349204044!GO:0048519;negative regulation of biological process;0.0330848977166138!GO:0016866;intramolecular transferase activity;0.0333392435780688!GO:0016125;sterol metabolic process;0.0335737701979689!GO:0005663;DNA replication factor C complex;0.0335737701979689!GO:0017134;fibroblast growth factor binding;0.0336939109253175!GO:0007033;vacuole organization and biogenesis;0.0337643427726053!GO:0050789;regulation of biological process;0.0345707639540586!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0351435463440526!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0352881314981779!GO:0046966;thyroid hormone receptor binding;0.0354055924449131!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0354055924449131!GO:0055083;monovalent inorganic anion homeostasis;0.0354055924449131!GO:0055064;chloride ion homeostasis;0.0354055924449131!GO:0030644;cellular chloride ion homeostasis;0.0354055924449131!GO:0005784;translocon complex;0.035509198406054!GO:0008408;3'-5' exonuclease activity;0.035509198406054!GO:0006518;peptide metabolic process;0.0358685215839195!GO:0050681;androgen receptor binding;0.0359410260330015!GO:0004722;protein serine/threonine phosphatase activity;0.0365023990560044!GO:0018202;peptidyl-histidine modification;0.0370236337177737!GO:0043488;regulation of mRNA stability;0.0371291139835733!GO:0043487;regulation of RNA stability;0.0371291139835733!GO:0019238;cyclohydrolase activity;0.0374147617223603!GO:0000790;nuclear chromatin;0.0376574869641618!GO:0006406;mRNA export from nucleus;0.0376574869641618!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.037934285224101!GO:0030036;actin cytoskeleton organization and biogenesis;0.037934285224101!GO:0004448;isocitrate dehydrogenase activity;0.0380449652167775!GO:0031371;ubiquitin conjugating enzyme complex;0.0383299629206389!GO:0032039;integrator complex;0.0395385550877934!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0397744818515616!GO:0008601;protein phosphatase type 2A regulator activity;0.0398681423319366!GO:0006665;sphingolipid metabolic process;0.0403701834079053!GO:0035267;NuA4 histone acetyltransferase complex;0.0405112701402665!GO:0009308;amine metabolic process;0.0407081180187067!GO:0044450;microtubule organizing center part;0.0422955142294689!GO:0031903;microbody membrane;0.0438253878188293!GO:0005778;peroxisomal membrane;0.0438253878188293!GO:0032774;RNA biosynthetic process;0.0440161251068813!GO:0000062;acyl-CoA binding;0.0440161251068813!GO:0042026;protein refolding;0.0442515904523897!GO:0043624;cellular protein complex disassembly;0.044563293551455!GO:0003677;DNA binding;0.0451453658056566!GO:0009124;nucleoside monophosphate biosynthetic process;0.0451453658056566!GO:0009123;nucleoside monophosphate metabolic process;0.0451453658056566!GO:0005669;transcription factor TFIID complex;0.0454975117918146!GO:0030125;clathrin vesicle coat;0.0459695535843042!GO:0030665;clathrin coated vesicle membrane;0.0459695535843042!GO:0006740;NADPH regeneration;0.0459695535843042!GO:0006098;pentose-phosphate shunt;0.0459695535843042!GO:0004463;leukotriene-A4 hydrolase activity;0.0464424071755938!GO:0004301;epoxide hydrolase activity;0.0464424071755938!GO:0007004;telomere maintenance via telomerase;0.0465393186015335!GO:0008216;spermidine metabolic process;0.046904677652081!GO:0006892;post-Golgi vesicle-mediated transport;0.04762813008049!GO:0016417;S-acyltransferase activity;0.04762813008049!GO:0022884;macromolecule transmembrane transporter activity;0.0482819216529033!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0482819216529033!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0491060365561365!GO:0006351;transcription, DNA-dependent;0.0499791518370996
|sample_id=10589
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=cervix
|top_motifs=VSX1,2:3.6507915571;HNF1A:3.1498475594;NANOG:3.12561698813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.75106013707;POU6F1:2.38449675319;SNAI1..3:2.35943060792;YY1:2.35147076981;FOXA2:2.27013025185;NKX6-1,2:2.20973688567;bHLH_family:2.1684821406;ZEB1:2.16413114166;LHX3,4:2.08742180018;NRF1:2.00285672862;DBP:1.99998361048;HOX{A6,A7,B6,B7}:1.97302982241;RFX2..5_RFXANK_RFXAP:1.96046980567;PITX1..3:1.94342486026;MYOD1:1.91803463521;RFX1:1.88877834026;HNF4A_NR2F1,2:1.71347563244;LMO2:1.67328448416;ONECUT1,2:1.58445765137;NKX2-1,4:1.53247801283;FOXM1:1.52003199962;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.44593593011;ADNP_IRX_SIX_ZHX:1.38237745633;FOXP1:1.3635665031;FOX{D1,D2}:1.28250143012;RBPJ:1.26898436674;AIRE:1.23633011907;ARID5B:1.2173482481;E2F1..5:1.16299780872;TEF:1.05258734002;CDX1,2,4:1.02824735568;FOX{F1,F2,J1}:0.956301349771;NKX3-1:0.954751730619;REST:0.953699687586;ZBTB16:0.944010007105;NFY{A,B,C}:0.943688621799;ZNF143:0.926189635774;NKX2-3_NKX2-5:0.885387081031;GFI1:0.832564408457;ELK1,4_GABP{A,B1}:0.81522828784;FOXL1:0.797100543828;ZFP161:0.795061673971;SOX{8,9,10}:0.750819874526;PAX4:0.696089374067;PBX1:0.674819081257;TOPORS:0.674034147644;MYB:0.559919970767;POU1F1:0.530997751919;CUX2:0.498105439025;PAX5:0.47247391656;AHR_ARNT_ARNT2:0.428693851096;GATA6:0.383237366351;HAND1,2:0.363494126772;PAX3,7:0.333568703665;HIC1:0.324761001303;CDC5L:0.256756317659;IKZF2:0.256481899415;RREB1:0.255607793324;MTE{core}:0.251578308206;BREu{core}:0.24506342441;FOXQ1:0.2346196994;PAX6:0.222763904326;STAT5{A,B}:0.214454500849;FOXD3:0.213282870294;HIF1A:0.152698533291;MED-1{core}:0.151237486538;XCPE1{core}:0.141717855544;SP1:0.138162010922;HMGA1,2:0.112489568083;TFAP2B:0.0777992501212;PRRX1,2:0.0711636900206;NHLH1,2:0.0460812310327;KLF4:0.0389773572323;EVI1:0.0305374335792;PAX2:0.0236166919577;NR1H4:0.0220958251639;POU5F1:0.0127981022871;JUN:0.00573110345848;PAX8:-0.00442478466544;FOX{I1,J2}:-0.00752434445541;PPARG:-0.0135588645663;ATF5_CREB3:-0.0162087191191;NANOG{mouse}:-0.016474974273;ESR1:-0.0174511757676;TBP:-0.0242640239623;ZBTB6:-0.0301561990449;TAL1_TCF{3,4,12}:-0.0404586074943;TGIF1:-0.0502859654578;TFDP1:-0.0621635387892;SOX5:-0.0934909685956;NR6A1:-0.0973456204163;ATF6:-0.107817563754;POU2F1..3:-0.133844273065;ZNF423:-0.150460693786;MTF1:-0.165819062237;FOXN1:-0.184320799916;NR3C1:-0.185191334874;PDX1:-0.195561711787;PATZ1:-0.199475568457;OCT4_SOX2{dimer}:-0.249863462492;HOX{A4,D4}:-0.256566449931;SREBF1,2:-0.260913058951;RXR{A,B,G}:-0.308058083565;ZNF384:-0.311550328618;BPTF:-0.313655429378;ATF2:-0.321298400379;MZF1:-0.325332764077;ATF4:-0.336923676853;MEF2{A,B,C,D}:-0.34157236227;ESRRA:-0.342026339197;HES1:-0.352873449716;CRX:-0.362929725293;GFI1B:-0.370145780155;FOXP3:-0.388416456966;EBF1:-0.395677076287;SOX17:-0.437737451071;NFE2L1:-0.468072586195;ALX1:-0.482280997176;AR:-0.48716369273;NR5A1,2:-0.488048661762;UFEwm:-0.5101632246;NKX2-2,8:-0.53514220858;HBP1_HMGB_SSRP1_UBTF:-0.551546780638;ELF1,2,4:-0.553077980208;MYFfamily:-0.58009259543;EN1,2:-0.581541005721;HLF:-0.617361521342;EGR1..3:-0.631348948028;PRDM1:-0.63263529839;SPIB:-0.635150753205;HOX{A5,B5}:-0.635849773321;CREB1:-0.669865523097;FOSL2:-0.689369169092;FOS_FOS{B,L1}_JUN{B,D}:-0.692448146845;HSF1,2:-0.69361342099;GZF1:-0.709751995916;GTF2I:-0.710683704662;BACH2:-0.710731122868;IKZF1:-0.733515205929;NFKB1_REL_RELA:-0.741060682864;MAZ:-0.74251714772;NFE2:-0.758284837357;TLX2:-0.772589735793;ZIC1..3:-0.777458687355;RUNX1..3:-0.799035380619;FOXO1,3,4:-0.807287128327;TP53:-0.821373252862;TFAP2{A,C}:-0.822705139778;GATA4:-0.827052559352;EP300:-0.836420696909;LEF1_TCF7_TCF7L1,2:-0.848912072238;SPI1:-0.88682737183;IRF7:-0.905255677082;RORA:-0.906524761771;T:-0.919446912603;TBX4,5:-0.926417828147;TFCP2:-0.948865368707;TLX1..3_NFIC{dimer}:-0.953906724176;GLI1..3:-0.95429548788;SOX2:-0.965552088373;XBP1:-0.975157915048;NFIX:-1.00767614957;ETS1,2:-1.03402819027;IRF1,2:-1.03543640495;POU3F1..4:-1.04909948896;PAX1,9:-1.05116119452;ZNF148:-1.07633551981;GTF2A1,2:-1.09568606597;HOXA9_MEIS1:-1.11417415372;NKX3-2:-1.16064303117;DMAP1_NCOR{1,2}_SMARC:-1.16304042871;STAT1,3:-1.17780569201;MYBL2:-1.19145590247;SMAD1..7,9:-1.22352126812;ALX4:-1.2256591222;NFE2L2:-1.24928352655;STAT2,4,6:-1.2965853645;MAFB:-1.33197402571;CEBPA,B_DDIT3:-1.35034418487;SRF:-1.36853323411;GCM1,2:-1.3720119923;SPZ1:-1.38663333265;HMX1:-1.40349225878;TEAD1:-1.43925883843;NFIL3:-1.47975592391;RXRA_VDR{dimer}:-1.48665734874;TFAP4:-1.52320267986;ZNF238:-1.74848635338;NFATC1..3:-2.20567967264
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10589-108D4;search_select_hide=table117:FF:10589-108D4
}}
}}

Latest revision as of 14:30, 3 June 2020

Name:argyrophil small cell carcinoma cell line:TC-YIK
Species:Human (Homo sapiens)
Library ID:CNhs11725
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecervix
dev stageNA
sexfemale
age31
cell typeunclassifiable
cell lineTC-YIK
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005178
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11725 CAGE DRX007829 DRR008701
Accession ID Hg19

Library idBAMCTSS
CNhs11725 DRZ000126 DRZ001511
Accession ID Hg38

Library idBAMCTSS
CNhs11725 DRZ011476 DRZ012861
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005178
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10073 RNA-Seq DRX057130 DRR062889
Accession ID Hg19

Library idBAMCTSS
RDhi10073 DRZ007965


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.13
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.299
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.0976
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.069
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0976
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0102
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.265
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.121
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.113
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.303
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.399
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0976
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0501
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.243
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell1.197
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11725

Jaspar motifP-value
MA0002.23.08261e-5
MA0003.10.539
MA0004.10.0583
MA0006.10.235
MA0007.10.448
MA0009.10.728
MA0014.10.337
MA0017.10.341
MA0018.20.164
MA0019.10.899
MA0024.14.06331e-5
MA0025.10.221
MA0027.10.394
MA0028.10.0938
MA0029.10.498
MA0030.10.0558
MA0031.10.0748
MA0035.20.578
MA0038.10.128
MA0039.20.365
MA0040.10.809
MA0041.10.463
MA0042.10.607
MA0043.10.92
MA0046.11.11552e-42
MA0047.20.00921
MA0048.10.494
MA0050.12.66862e-5
MA0051.10.00591
MA0052.10.0121
MA0055.10.207
MA0057.10.223
MA0058.10.012
MA0059.10.00856
MA0060.19.26993e-4
MA0061.16.51271e-5
MA0062.20.0687
MA0065.20.771
MA0066.10.327
MA0067.10.582
MA0068.10.546
MA0069.10.492
MA0070.10.335
MA0071.10.736
MA0072.10.713
MA0073.10.538
MA0074.10.344
MA0076.10.0337
MA0077.10.891
MA0078.10.407
MA0079.20.802
MA0080.25.45416e-9
MA0081.10.00192
MA0083.18.21898e-4
MA0084.10.589
MA0087.10.726
MA0088.10.0955
MA0090.18.21113e-4
MA0091.10.716
MA0092.10.1
MA0093.10.0427
MA0099.22.03989e-17
MA0100.10.11
MA0101.16.96638e-5
MA0102.20.0253
MA0103.13.06817e-6
MA0104.20.00187
MA0105.17.65195e-4
MA0106.10.364
MA0107.15.88325e-6
MA0108.20.817
MA0111.10.712
MA0112.20.00403
MA0113.10.302
MA0114.10.0443
MA0115.10.00106
MA0116.10.0227
MA0117.10.639
MA0119.10.113
MA0122.10.384
MA0124.10.235
MA0125.10.0262
MA0131.10.551
MA0135.10.578
MA0136.11.02136e-6
MA0137.20.0717
MA0138.20.489
MA0139.10.674
MA0140.10.564
MA0141.10.585
MA0142.10.673
MA0143.10.0251
MA0144.10.0134
MA0145.10.0531
MA0146.10.573
MA0147.10.00245
MA0148.10.168
MA0149.10.872
MA0150.18.63331e-5
MA0152.10.906
MA0153.11.30226e-26
MA0154.10.071
MA0155.10.485
MA0156.12.69252e-4
MA0157.10.215
MA0159.10.542
MA0160.10.369
MA0162.10.288
MA0163.10.0188
MA0164.10.314
MA0258.10.0697
MA0259.10.0141



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11725

Novel motifP-value
10.806
100.466
1000.354
1010.978
1020.628
1030.158
1040.375
1050.58
1062.74761e-5
1070.0104
1080.997
1090.536
110.37
1100.434
1110.509
1120.419
1130.832
1140.128
1150.814
1160.448
1170.724
1180.73
1190.24
120.967
1200.816
1210.656
1220.0818
1230.385
1240.495
1250.92
1260.97
1270.112
1280.0177
1290.395
130.356
1300.385
1310.573
1320.325
1330.358
1340.612
1350.0858
1360.489
1370.355
1380.982
1390.487
140.615
1400.985
1410.552
1420.579
1435.59403e-4
1440.103
1450.239
1460.595
1470.419
1480.337
1490.114
150.431
1500.242
1510.25
1520.0111
1530.629
1540.564
1550.325
1560.958
1570.589
1580.996
1590.268
160.51
1600.815
1610.923
1620.596
1630.124
1640.577
1650.256
1660.394
1670.454
1680.193
1690.026
170.397
180.014
190.169
20.502
200.427
210.478
220.0612
230.00241
240.136
250.669
260.683
270.498
280.964
290.615
30.429
300.256
310.589
320.0116
330.796
340.262
350.587
360.45
370.171
380.358
390.202
40.816
400.907
410.0543
420.515
430.118
440.395
450.216
460.233
470.727
480.842
490.292
50.248
500.543
510.366
520.102
530.768
540.304
550.0845
560.889
570.962
580.693
590.0548
60.693
600.0145
610.989
620.345
630.151
640.761
650.0797
660.811
670.403
680.79
690.909
70.679
700.0854
710.267
720.153
730.0745
740.169
750.716
760.734
770.311
780.486
790.2
80.781
800.218
810.189
820.684
830.0512
840.96
850.0137
860.319
870.691
880.474
890.192
90.0581
900.167
910.156
920.316
930.469
940.0685
950.614
960.354
970.874
980.524
990.877



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11725


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002535 (epithelial cell of cervix)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
4362 (cervical cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0000483 (epithelium)
0003134 (female reproductive organ)
0000479 (tissue)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0006955 (uterine epithelium)
0004801 (cervix epithelium)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101967 (cervical cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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