FF:10597-108E3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004939 | ||
|accession_numbers=CAGE;DRX007795;DRR008667;DRZ000092;DRZ001477;DRZ011442;DRZ012827 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:4,DOID:7 | |ancestors_in_disease_facet=DOID:4,DOID:7 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100067,FF:0103192 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100067 | |fonse_cell_line=FF:0100067 | ||
|fonse_cell_line_closure=FF:0100067 | |fonse_cell_line_closure=FF:0100067 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aHFWT.CNhs11728.10597-108E3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aHFWT.CNhs11728.10597-108E3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aHFWT.CNhs11728.10597-108E3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aHFWT.CNhs11728.10597-108E3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aHFWT.CNhs11728.10597-108E3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10597-108E3 | |id=FF:10597-108E3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0103192 | ||
|is_obsolete= | |||
|library_id=CNhs11728 | |||
|library_id_phase_based=2:CNhs11728 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10597 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10597 | |||
|name=Wilms' tumor cell line:HFWT | |name=Wilms' tumor cell line:HFWT | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11728,LSID819,release009,COMPLETED | |profile_hcage=CNhs11728,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.334120033347706,0.282960084399555,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139482197085237,0,0,0,0,0,0.194847311165607,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.328478856420898,0.24458313219461,0,0,0,0,0,0,0,0.503676748319243,0,0,0,0.292805207433665,0,0.10137956798563,0,0.492671289294437,0,0,0.195461580220568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0804712504680165,0,0.00623639145856125,0,0,0,0,0.469630966575166,-0.0647947989790365,0,0.292805207433665,0,0,0.194769856195958,0.521085755180217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.292805207433665,0,0,0.102734598083727,0.179736878042516,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.194769856195958,0.466119888327111,0,0.466119888327111,0,0,0,0,0,0.292805207433665,0,0,0.342484775251478,0.0553605036999935,0.290269221276095,-0.143515142523472,0,0,-0.427279086909571,0,0,0,0,0,0,0.292805207433665,0,0,-0.128119866952565,0,0.24239265584435,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.168609200390533,-0.0683442610773682,0,0,0,0,-0.270240669334324,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,-0.390179676695962,-0.0493919088910696,0,0,0,-0.531841963095838,-0.254023473364785,0,0,-0.121779851751874,0.0517103256028965,0,0,-0.391044581551635,0,0.0381391241006673,-0.0604397418968705,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0889091368953955,0.139131291648142,-0.0304099808375785,0,0.466119888327111,0,0.00568079498875251,0,0,0.515306591138645,0.560676078281253,0.106824146243356,0.904536297784475,0,-0.302389727009913,0.137052348335194,0.834807795159468,0.14824739579186,-0.147401849371139,-0.189981719549847,0,0.342561504908141,0.1023201179812,0.0535871000688246,-0.0574856272635527,0,-0.132773147887312,0.545985335328038,0,0,0,0.474459905335044,0,0.0471914000350591,-0.490114714476774,0.245650955630359,0.49992413185468,-0.0058073793774665,0.746452171577597,-0.0415113033485721,1.83602804951283,-0.457436452896595,0.21754983809984,0.0227240486439065,0.326554087072465,0,0.0750426560596877,0.0809618414116681,-0.785912107107322,0.0699083499014065,0,-0.191172254377316,-0.0683442610773682,0.146402603716833,0.104465819772985,0.180351172323105,0,0,-0.112657342544301,0,0,0,0,0.292805207433665,-0.0869604006858966,0.524489298866913,0.0599496458781198,0,0.393565600416533,0,0.17246952350661,0,0.220036768498954,-0.104914587438346,0.356994240971274,0.238979950295802,0,0.119357084977773,-0.403856661514449,0.40411395286246,-0.129589597958073,0.62728769626826,0.0338835062523725,-0.118717001213283,0.317720838578301,-0.0245844247621229,0.447604665538009,-0.0881268324752877,0,-0.417424862191269,0.00623639145856125,0.0229469901612118,-0.094260038972697,0,0.252204966654022,0,0.546421934965552,0,0.0086266164283415,-0.0743138631461288,0.659345985819106,-0.210579776350571,0,0.586564224361843,-0.788130937773974,0,0.2308979928334,0.0733472468831133,0.292805207433665,0.315752804992472,0.608720420213417,0.083181397403932,-0.138989456679195,0,0.040821393118997,0,0,-0.120164516909056,0.0573291696692759,0,0.653962723352215,0.279389832881816,0.494419319204498,0.473692577102108,0,0,0.9401743459073,0,0,0.42039264071053,0,0.406537380569927,0.336337309050287,0,0.0377797942625767,0,0.466119888327111,-0.177527765965176,0,0.243192933290708,0,0,-0.103478692881991,0.176177094443532,0,0.146402603716833,0,-0.0237658891492235,0,0,0,0,0,0,0,0.211324912739516,-0.0620281227827834,0,0.127545129753443,0,0,0,0,0,0,0,0,-1.59233083881968,0,-0.12301741567642,0,0,0,0,-0.215723402553475,-0.203236562094724,0,0.160942500936033,0,0,0,0,0.206664217644453,0,0,0,0,0.235074750380001,-0.228251967188429,0,0,0,0.74936630292677,0.292805207433665,0,0,0,0.325010048274503,0,0,-0.339124965952715,0,-0.207468995957973,0.749319671961812,0,-0.111945555187072,-0.448269035486355,0.105761657102373,0,0,0.503008308238216,0,0,-0.446280671096205,0,0.292805207433665,0,0,0,0,0,0.292805207433665,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.125979453492853,-0.0922240566585104,0.525603980019934,0,0,0.292805207433665,0,0,0,0.208953921084652,-0.0674307938649415,0,0,0,0,0,0,0,0,-0.178620732229577,0,0,0,0,0,0.492671289294437,0,0,0,0,0.56592016879911,0,0,0.55353941931514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.334120033347706,0,0,0,0,0,0,0,0.314830352330952,0,0,0,0,0.178920833724687,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0.146402603716833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0998045499520068,0,-0.00055993795413567,0.166870933057062,0,0,-0.0862257489162095,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292805207433665,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,0.194847311165607,0,0,-0.0920328098005262,0,0,0,0,0,0,0.240603483074175,0.0596468617168955,0.24627591262811,0,0,0,-0.054385572482455,0.292805207433665,0,0.120516428889511,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139482197085237,0,0.685734523080086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509645182268404,0,0,0,0.079718977776621,0,0,0,0,0,0,0,0,0.292805207433665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292805207433665,0,0,0,0.425472684558259,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24458313219461,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280397508992941,0,0,0,0,0.418482777666192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.17124138653392,0,0,0,0,0,0,0,0,0,0,0,0,0.231485028283538,0,0,0,0,0,0,0,0,0,0,0.417689846101443,0,0,0,0,0,0,0,0,0,0,0.589663650537043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1406757803386,0.179736878042516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.08E+05 | ||
|rna_weight_ug=24.11006 | |rna_weight_ug=24.11006 | ||
|sample_age=5 months | |sample_age=5 months | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0665 | |sample_cell_catalog=RCB0665 | ||
|sample_cell_line=HFWT | |sample_cell_line=HFWT | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.20394135907529e-246!GO:0043226;organelle;1.55458425543409e-205!GO:0043229;intracellular organelle;5.09936291287279e-205!GO:0043227;membrane-bound organelle;4.8155825500606e-198!GO:0043231;intracellular membrane-bound organelle;5.65725523517536e-198!GO:0005737;cytoplasm;6.73314996154761e-160!GO:0044422;organelle part;4.25354463867869e-138!GO:0044446;intracellular organelle part;1.97858801268455e-136!GO:0044444;cytoplasmic part;1.48006059059578e-113!GO:0044237;cellular metabolic process;2.13253360031026e-92!GO:0044238;primary metabolic process;5.12673068163928e-92!GO:0043170;macromolecule metabolic process;5.80074343322033e-91!GO:0005634;nucleus;2.70828989313853e-90!GO:0032991;macromolecular complex;1.71217013184101e-88!GO:0030529;ribonucleoprotein complex;2.86202537328348e-80!GO:0043233;organelle lumen;1.16885604185809e-76!GO:0031974;membrane-enclosed lumen;1.16885604185809e-76!GO:0003723;RNA binding;4.01978225006989e-74!GO:0044428;nuclear part;1.79528523319148e-73!GO:0005739;mitochondrion;2.47393832738319e-68!GO:0005515;protein binding;1.53263426019495e-59!GO:0043283;biopolymer metabolic process;3.49905047790073e-58!GO:0010467;gene expression;1.40155774850215e-53!GO:0006396;RNA processing;4.37900135412595e-51!GO:0016043;cellular component organization and biogenesis;2.75684639728656e-50!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.20417295454817e-50!GO:0006412;translation;5.04080012232146e-48!GO:0005840;ribosome;9.13731542100464e-47!GO:0031981;nuclear lumen;1.36172612326572e-46!GO:0019538;protein metabolic process;1.07144151509324e-45!GO:0044429;mitochondrial part;2.07435360814202e-45!GO:0031090;organelle membrane;4.33384024061891e-45!GO:0043234;protein complex;1.22450325828998e-43!GO:0044260;cellular macromolecule metabolic process;7.99405046928372e-42!GO:0044267;cellular protein metabolic process;1.63576771445465e-41!GO:0031975;envelope;1.03075127025028e-40!GO:0031967;organelle envelope;1.35017726423446e-40!GO:0003735;structural constituent of ribosome;1.377844627351e-40!GO:0016071;mRNA metabolic process;3.41841120997866e-40!GO:0033036;macromolecule localization;1.8143716132762e-37!GO:0015031;protein transport;3.36111600793042e-37!GO:0044249;cellular biosynthetic process;2.22015739126868e-36!GO:0033279;ribosomal subunit;5.67355314216386e-36!GO:0003676;nucleic acid binding;1.6471148355601e-35!GO:0008380;RNA splicing;2.59471829816136e-35!GO:0009059;macromolecule biosynthetic process;7.25568229043139e-35!GO:0009058;biosynthetic process;4.27527894645825e-34!GO:0006996;organelle organization and biogenesis;1.29707165421613e-33!GO:0008104;protein localization;1.29707165421613e-33!GO:0045184;establishment of protein localization;2.15868563052175e-33!GO:0005829;cytosol;8.82357724719889e-33!GO:0043228;non-membrane-bound organelle;1.92295843878066e-32!GO:0043232;intracellular non-membrane-bound organelle;1.92295843878066e-32!GO:0006397;mRNA processing;3.42461655054362e-32!GO:0006259;DNA metabolic process;1.71503200036614e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.80166154458526e-31!GO:0046907;intracellular transport;5.98768749398921e-31!GO:0065003;macromolecular complex assembly;1.69477147110226e-30!GO:0005740;mitochondrial envelope;1.120012216066e-29!GO:0019866;organelle inner membrane;8.06464682154871e-29!GO:0016070;RNA metabolic process;1.22413733590558e-28!GO:0005654;nucleoplasm;2.35114831941652e-28!GO:0000166;nucleotide binding;2.04599719088731e-27!GO:0031966;mitochondrial membrane;2.34253064758607e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.89031619243285e-27!GO:0005743;mitochondrial inner membrane;8.03439296963551e-27!GO:0022607;cellular component assembly;8.82563399259135e-27!GO:0044451;nucleoplasm part;4.10940128532958e-24!GO:0006886;intracellular protein transport;8.09865036615914e-24!GO:0005681;spliceosome;1.05366463476625e-23!GO:0044445;cytosolic part;3.01304247781569e-23!GO:0006119;oxidative phosphorylation;7.16716977685234e-22!GO:0051649;establishment of cellular localization;2.42780746202557e-21!GO:0051641;cellular localization;3.26710421760235e-21!GO:0006512;ubiquitin cycle;4.64291711919521e-21!GO:0044455;mitochondrial membrane part;6.66913612229644e-21!GO:0016874;ligase activity;8.69620850537308e-21!GO:0005730;nucleolus;9.08038579072285e-21!GO:0006457;protein folding;4.45538773026318e-20!GO:0015935;small ribosomal subunit;9.3928821525811e-20!GO:0017111;nucleoside-triphosphatase activity;1.24284314592577e-19!GO:0016462;pyrophosphatase activity;1.38792210118203e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.53459514946282e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.8846806487072e-19!GO:0031980;mitochondrial lumen;2.0321767383558e-19!GO:0005759;mitochondrial matrix;2.0321767383558e-19!GO:0032553;ribonucleotide binding;3.99519971883218e-19!GO:0032555;purine ribonucleotide binding;3.99519971883218e-19!GO:0017076;purine nucleotide binding;8.44690083022126e-19!GO:0022618;protein-RNA complex assembly;1.01365701658375e-18!GO:0005524;ATP binding;4.42162718228739e-18!GO:0032559;adenyl ribonucleotide binding;5.79683695014033e-18!GO:0044265;cellular macromolecule catabolic process;9.1095301572565e-18!GO:0005746;mitochondrial respiratory chain;9.93375385905449e-18!GO:0030554;adenyl nucleotide binding;2.03865897587457e-17!GO:0015934;large ribosomal subunit;2.06018761071239e-17!GO:0012505;endomembrane system;8.97792845416986e-17!GO:0043285;biopolymer catabolic process;9.92571650967291e-17!GO:0006974;response to DNA damage stimulus;2.25791237398902e-16!GO:0008135;translation factor activity, nucleic acid binding;3.14032777429292e-16!GO:0043412;biopolymer modification;4.23674302048811e-16!GO:0051276;chromosome organization and biogenesis;4.81272250684089e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;4.84361765398151e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.25416927292402e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.01313367735559e-15!GO:0003954;NADH dehydrogenase activity;1.01313367735559e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.01313367735559e-15!GO:0009057;macromolecule catabolic process;1.06656236549791e-15!GO:0051082;unfolded protein binding;1.17268433621549e-15!GO:0008134;transcription factor binding;1.63282444416097e-15!GO:0006323;DNA packaging;3.35667952158687e-15!GO:0016887;ATPase activity;3.81887625105536e-15!GO:0007049;cell cycle;6.26107921419943e-15!GO:0042623;ATPase activity, coupled;1.05129756101471e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.29432722987642e-14!GO:0006605;protein targeting;1.34014360328894e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.14728624939395e-14!GO:0019941;modification-dependent protein catabolic process;2.5946869964158e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.5946869964158e-14!GO:0044257;cellular protein catabolic process;2.69628088350665e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.55340654735513e-14!GO:0042775;organelle ATP synthesis coupled electron transport;7.96671531318325e-14!GO:0042773;ATP synthesis coupled electron transport;7.96671531318325e-14!GO:0006464;protein modification process;8.27957944189621e-14!GO:0006281;DNA repair;1.21023668473688e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.28452391483077e-13!GO:0045271;respiratory chain complex I;1.28452391483077e-13!GO:0005747;mitochondrial respiratory chain complex I;1.28452391483077e-13!GO:0051186;cofactor metabolic process;2.00723609574529e-13!GO:0048193;Golgi vesicle transport;2.38975000052997e-13!GO:0031965;nuclear membrane;3.90252388067267e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.56387626398582e-13!GO:0043687;post-translational protein modification;4.69176778854452e-13!GO:0016192;vesicle-mediated transport;5.00620923408476e-13!GO:0016604;nuclear body;5.42358257736938e-13!GO:0044248;cellular catabolic process;6.12848574408926e-13!GO:0030163;protein catabolic process;1.07240900601619e-12!GO:0042254;ribosome biogenesis and assembly;1.23325290251505e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.29501110424638e-12!GO:0006399;tRNA metabolic process;1.73144052222167e-12!GO:0006260;DNA replication;1.76923329603212e-12!GO:0005794;Golgi apparatus;1.91815737111368e-12!GO:0005761;mitochondrial ribosome;2.07182089726061e-12!GO:0000313;organellar ribosome;2.07182089726061e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;3.53122411636681e-12!GO:0000375;RNA splicing, via transesterification reactions;3.53122411636681e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.53122411636681e-12!GO:0006413;translational initiation;6.1959762100155e-12!GO:0044432;endoplasmic reticulum part;6.23837936510757e-12!GO:0005783;endoplasmic reticulum;6.23837936510757e-12!GO:0048770;pigment granule;6.57178115323445e-12!GO:0042470;melanosome;6.57178115323445e-12!GO:0005635;nuclear envelope;6.98300385690792e-12!GO:0005694;chromosome;7.94476462012059e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.76143729078939e-12!GO:0016568;chromatin modification;1.2571180251961e-11!GO:0003743;translation initiation factor activity;1.39862432520781e-11!GO:0044453;nuclear membrane part;1.56142515484171e-11!GO:0006913;nucleocytoplasmic transport;2.2255876810811e-11!GO:0016607;nuclear speck;2.2487109396064e-11!GO:0051169;nuclear transport;4.47815743964129e-11!GO:0009719;response to endogenous stimulus;4.83343964174021e-11!GO:0006446;regulation of translational initiation;5.23467969855115e-11!GO:0004386;helicase activity;8.68577266110659e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.24007130399209e-10!GO:0004812;aminoacyl-tRNA ligase activity;1.24007130399209e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.24007130399209e-10!GO:0006732;coenzyme metabolic process;2.02679838861827e-10!GO:0000502;proteasome complex (sensu Eukaryota);2.19671215527324e-10!GO:0050794;regulation of cellular process;2.3817159794568e-10!GO:0008026;ATP-dependent helicase activity;2.76581535642191e-10!GO:0008639;small protein conjugating enzyme activity;2.82278489293836e-10!GO:0022402;cell cycle process;2.94449045750962e-10!GO:0005643;nuclear pore;3.05267398449455e-10!GO:0043038;amino acid activation;3.68519042834561e-10!GO:0006418;tRNA aminoacylation for protein translation;3.68519042834561e-10!GO:0043039;tRNA aminoacylation;3.68519042834561e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.43772820284552e-10!GO:0006333;chromatin assembly or disassembly;5.48053946722886e-10!GO:0004842;ubiquitin-protein ligase activity;5.74407827666309e-10!GO:0003712;transcription cofactor activity;6.21292158811584e-10!GO:0044427;chromosomal part;6.34120891753251e-10!GO:0019787;small conjugating protein ligase activity;8.15561706746745e-10!GO:0006366;transcription from RNA polymerase II promoter;9.31370795719626e-10!GO:0006403;RNA localization;1.32550619767959e-09!GO:0009055;electron carrier activity;1.44774877811639e-09!GO:0050657;nucleic acid transport;1.56928610022751e-09!GO:0051236;establishment of RNA localization;1.56928610022751e-09!GO:0050658;RNA transport;1.56928610022751e-09!GO:0008565;protein transporter activity;2.50176290959349e-09!GO:0016881;acid-amino acid ligase activity;2.58558609532361e-09!GO:0065002;intracellular protein transport across a membrane;2.75754552001418e-09!GO:0065004;protein-DNA complex assembly;5.66372732750208e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.67479139703731e-09!GO:0017038;protein import;1.06814305319354e-08!GO:0046930;pore complex;1.08355430330664e-08!GO:0019829;cation-transporting ATPase activity;1.115357437787e-08!GO:0000278;mitotic cell cycle;1.51922529752692e-08!GO:0006364;rRNA processing;1.5213920475763e-08!GO:0007005;mitochondrion organization and biogenesis;1.83178200909116e-08!GO:0006163;purine nucleotide metabolic process;2.05822687146249e-08!GO:0019222;regulation of metabolic process;2.14574149016827e-08!GO:0016072;rRNA metabolic process;2.55048317570445e-08!GO:0009259;ribonucleotide metabolic process;3.06256628058824e-08!GO:0006461;protein complex assembly;3.70243883466843e-08!GO:0051188;cofactor biosynthetic process;3.88259077894339e-08!GO:0005793;ER-Golgi intermediate compartment;4.14504940509394e-08!GO:0012501;programmed cell death;4.31182832412605e-08!GO:0006915;apoptosis;5.62422220010518e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.85933643403087e-08!GO:0009150;purine ribonucleotide metabolic process;5.95470759800196e-08!GO:0006164;purine nucleotide biosynthetic process;6.33187255915408e-08!GO:0000785;chromatin;6.42845126562574e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.50789724355313e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.26257397486592e-08!GO:0016740;transferase activity;7.52164480879209e-08!GO:0009056;catabolic process;8.33292396045273e-08!GO:0051028;mRNA transport;1.0043833102374e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.2526818599071e-07!GO:0005789;endoplasmic reticulum membrane;1.36170124137536e-07!GO:0006793;phosphorus metabolic process;1.4157774077532e-07!GO:0006796;phosphate metabolic process;1.4157774077532e-07!GO:0005667;transcription factor complex;1.47069310524899e-07!GO:0009060;aerobic respiration;1.48124385339138e-07!GO:0015986;ATP synthesis coupled proton transport;1.48846598581015e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.48846598581015e-07!GO:0009260;ribonucleotide biosynthetic process;1.54130240465093e-07!GO:0045333;cellular respiration;1.59394842289557e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.785274664242e-07!GO:0043566;structure-specific DNA binding;1.96747911925973e-07!GO:0008219;cell death;1.96747911925973e-07!GO:0016265;death;1.96747911925973e-07!GO:0050789;regulation of biological process;1.98051371056425e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.41550068737847e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.14341496141556e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.14341496141556e-07!GO:0005768;endosome;4.47719257685224e-07!GO:0009141;nucleoside triphosphate metabolic process;4.69071829170109e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.86434481155762e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.86434481155762e-07!GO:0032446;protein modification by small protein conjugation;4.96420141081274e-07!GO:0031323;regulation of cellular metabolic process;5.58382589769762e-07!GO:0003697;single-stranded DNA binding;6.32717424341524e-07!GO:0030532;small nuclear ribonucleoprotein complex;6.53527206354828e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.55680999304107e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.55680999304107e-07!GO:0048523;negative regulation of cellular process;6.64645904100469e-07!GO:0051726;regulation of cell cycle;8.76428314891169e-07!GO:0005788;endoplasmic reticulum lumen;8.80912025178978e-07!GO:0000074;regulation of progression through cell cycle;8.88588649802106e-07!GO:0005813;centrosome;1.01811674931546e-06!GO:0006754;ATP biosynthetic process;1.09886445891005e-06!GO:0006753;nucleoside phosphate metabolic process;1.09886445891005e-06!GO:0046034;ATP metabolic process;1.1055376988904e-06!GO:0051187;cofactor catabolic process;1.18204002788196e-06!GO:0003714;transcription corepressor activity;1.19207884047714e-06!GO:0006261;DNA-dependent DNA replication;1.21632471055438e-06!GO:0016564;transcription repressor activity;1.24949760606223e-06!GO:0000245;spliceosome assembly;1.27075673839887e-06!GO:0005815;microtubule organizing center;1.2941251249258e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.2941251249258e-06!GO:0006099;tricarboxylic acid cycle;1.78086107205532e-06!GO:0046356;acetyl-CoA catabolic process;1.78086107205532e-06!GO:0009108;coenzyme biosynthetic process;1.8335610456094e-06!GO:0016567;protein ubiquitination;1.83556471290015e-06!GO:0016310;phosphorylation;1.84477677398628e-06!GO:0006084;acetyl-CoA metabolic process;2.16767952340804e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.21713325894601e-06!GO:0009109;coenzyme catabolic process;2.34127304380967e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.47034650666174e-06!GO:0031324;negative regulation of cellular metabolic process;3.62149836271561e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.70996948759122e-06!GO:0006350;transcription;3.71467070918338e-06!GO:0015630;microtubule cytoskeleton;3.87137765186356e-06!GO:0044431;Golgi apparatus part;3.89434443763873e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.65327851406536e-06!GO:0051301;cell division;4.71489347633634e-06!GO:0043069;negative regulation of programmed cell death;5.22836379958733e-06!GO:0045259;proton-transporting ATP synthase complex;5.33665566487989e-06!GO:0051427;hormone receptor binding;5.5030108660508e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.75463577973523e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.21169734789103e-06!GO:0043066;negative regulation of apoptosis;6.61475210459035e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;7.16194419321949e-06!GO:0015399;primary active transmembrane transporter activity;7.16194419321949e-06!GO:0006752;group transfer coenzyme metabolic process;7.26977180375649e-06!GO:0006606;protein import into nucleus;8.53190928690983e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.9887369662868e-06!GO:0022403;cell cycle phase;9.64423878115886e-06!GO:0000087;M phase of mitotic cell cycle;1.01617499462629e-05!GO:0043623;cellular protein complex assembly;1.11008871920785e-05!GO:0035257;nuclear hormone receptor binding;1.23539180872419e-05!GO:0007067;mitosis;1.40786639937262e-05!GO:0031497;chromatin assembly;1.77883671217378e-05!GO:0000151;ubiquitin ligase complex;1.78088859184627e-05!GO:0016779;nucleotidyltransferase activity;1.78213097959295e-05!GO:0016787;hydrolase activity;1.7855139307154e-05!GO:0051170;nuclear import;1.81709945126567e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.9682334138448e-05!GO:0006916;anti-apoptosis;2.13745926079913e-05!GO:0006334;nucleosome assembly;2.567477588043e-05!GO:0016741;transferase activity, transferring one-carbon groups;2.71186099773129e-05!GO:0048519;negative regulation of biological process;3.12306664901317e-05!GO:0044440;endosomal part;3.12306664901317e-05!GO:0010008;endosome membrane;3.12306664901317e-05!GO:0016044;membrane organization and biogenesis;3.24826086428467e-05!GO:0008168;methyltransferase activity;3.39503595574243e-05!GO:0010468;regulation of gene expression;3.42218102153077e-05!GO:0006402;mRNA catabolic process;3.65707199033535e-05!GO:0016481;negative regulation of transcription;3.86703060754978e-05!GO:0006091;generation of precursor metabolites and energy;3.99392559273244e-05!GO:0003724;RNA helicase activity;4.32134700559391e-05!GO:0051246;regulation of protein metabolic process;4.35122050974568e-05!GO:0051168;nuclear export;5.74182851822259e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.78754073572368e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.87656188841445e-05!GO:0043492;ATPase activity, coupled to movement of substances;6.31175170987341e-05!GO:0006839;mitochondrial transport;7.2328349261752e-05!GO:0031252;leading edge;7.91689081527222e-05!GO:0005770;late endosome;9.10384630646092e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000100076420212048!GO:0005762;mitochondrial large ribosomal subunit;0.000107996856068371!GO:0000315;organellar large ribosomal subunit;0.000107996856068371!GO:0030120;vesicle coat;0.000115766471407233!GO:0030662;coated vesicle membrane;0.000115766471407233!GO:0003899;DNA-directed RNA polymerase activity;0.000121809847796308!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000124946563515746!GO:0048475;coated membrane;0.00014658163876995!GO:0030117;membrane coat;0.00014658163876995!GO:0032774;RNA biosynthetic process;0.000150296368253864!GO:0009892;negative regulation of metabolic process;0.000155299852949581!GO:0006351;transcription, DNA-dependent;0.000163156600364525!GO:0000314;organellar small ribosomal subunit;0.000164401077165947!GO:0005763;mitochondrial small ribosomal subunit;0.000164401077165947!GO:0045786;negative regulation of progression through cell cycle;0.000164401077165947!GO:0003682;chromatin binding;0.000167070654286621!GO:0044452;nucleolar part;0.000168689325798429!GO:0003690;double-stranded DNA binding;0.000172971157089926!GO:0005769;early endosome;0.000175361956125549!GO:0008654;phospholipid biosynthetic process;0.000220259365003604!GO:0000139;Golgi membrane;0.000232892830167766!GO:0045892;negative regulation of transcription, DNA-dependent;0.000233586954065221!GO:0015980;energy derivation by oxidation of organic compounds;0.000235769711274037!GO:0006401;RNA catabolic process;0.000250740748931945!GO:0016563;transcription activator activity;0.000297680804030901!GO:0005048;signal sequence binding;0.000305182029821622!GO:0000279;M phase;0.000309717376245043!GO:0003713;transcription coactivator activity;0.000318349061910124!GO:0065007;biological regulation;0.000322368858791857!GO:0045454;cell redox homeostasis;0.000323775506443546!GO:0003684;damaged DNA binding;0.000334235027008485!GO:0051789;response to protein stimulus;0.000338745141861656!GO:0006986;response to unfolded protein;0.000338745141861656!GO:0030880;RNA polymerase complex;0.000342230128918054!GO:0009117;nucleotide metabolic process;0.000342840945170788!GO:0042981;regulation of apoptosis;0.000343381299731524!GO:0043067;regulation of programmed cell death;0.000365693366955311!GO:0003729;mRNA binding;0.000367819476262289!GO:0005819;spindle;0.000380858404894575!GO:0008033;tRNA processing;0.000419723153214706!GO:0043021;ribonucleoprotein binding;0.000444876968176558!GO:0006626;protein targeting to mitochondrion;0.000451204976498023!GO:0006414;translational elongation;0.0004531683817647!GO:0006352;transcription initiation;0.000459487406596521!GO:0043681;protein import into mitochondrion;0.000466792124200919!GO:0035258;steroid hormone receptor binding;0.000479979416855282!GO:0051087;chaperone binding;0.000488673137676994!GO:0019843;rRNA binding;0.00050266851719618!GO:0048471;perinuclear region of cytoplasm;0.000509651895942574!GO:0006613;cotranslational protein targeting to membrane;0.000519112333417206!GO:0004576;oligosaccharyl transferase activity;0.000572096773795787!GO:0019899;enzyme binding;0.000630932575630451!GO:0006383;transcription from RNA polymerase III promoter;0.000630932575630451!GO:0004674;protein serine/threonine kinase activity;0.000636025804496638!GO:0003924;GTPase activity;0.000641762661987854!GO:0007006;mitochondrial membrane organization and biogenesis;0.00064942487274203!GO:0005905;coated pit;0.000666556029439176!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000708030497612098!GO:0045449;regulation of transcription;0.000719286044100639!GO:0005798;Golgi-associated vesicle;0.000757845396749726!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000793078763335851!GO:0008139;nuclear localization sequence binding;0.00079362835152401!GO:0008250;oligosaccharyl transferase complex;0.000857573817434319!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00088135412804225!GO:0000428;DNA-directed RNA polymerase complex;0.00088135412804225!GO:0031072;heat shock protein binding;0.000883191118395567!GO:0044262;cellular carbohydrate metabolic process;0.000907664288342073!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000939682500609584!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000939682500609584!GO:0051329;interphase of mitotic cell cycle;0.0009704656084073!GO:0016491;oxidoreductase activity;0.000992482885905057!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00103793057932488!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00104888339733121!GO:0019752;carboxylic acid metabolic process;0.0010782876135932!GO:0005885;Arp2/3 protein complex;0.00111651576460104!GO:0006082;organic acid metabolic process;0.00114921393934524!GO:0008186;RNA-dependent ATPase activity;0.00130374422322179!GO:0051920;peroxiredoxin activity;0.00132905645594261!GO:0016853;isomerase activity;0.00132905645594261!GO:0000059;protein import into nucleus, docking;0.00134014310178313!GO:0022890;inorganic cation transmembrane transporter activity;0.00134455373976516!GO:0045045;secretory pathway;0.00140053503415045!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00140680639361344!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00140680639361344!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00140680639361344!GO:0006611;protein export from nucleus;0.00142904372146913!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00143013005353068!GO:0006818;hydrogen transport;0.00149748805988724!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00159927491649113!GO:0016859;cis-trans isomerase activity;0.00166638385949087!GO:0003746;translation elongation factor activity;0.00184661677079826!GO:0015992;proton transport;0.0019022328981637!GO:0006284;base-excision repair;0.00193966011379275!GO:0030867;rough endoplasmic reticulum membrane;0.00211959541124273!GO:0051052;regulation of DNA metabolic process;0.00214308915387852!GO:0008287;protein serine/threonine phosphatase complex;0.00227935591421927!GO:0007264;small GTPase mediated signal transduction;0.00245291746008643!GO:0000049;tRNA binding;0.00253024406899529!GO:0005839;proteasome core complex (sensu Eukaryota);0.00258419719559071!GO:0006892;post-Golgi vesicle-mediated transport;0.00262660379176989!GO:0008092;cytoskeletal protein binding;0.00279345750562171!GO:0032508;DNA duplex unwinding;0.00286942079077805!GO:0032392;DNA geometric change;0.00286942079077805!GO:0006897;endocytosis;0.00293564533408886!GO:0010324;membrane invagination;0.00293564533408886!GO:0005525;GTP binding;0.00296949747509745!GO:0007265;Ras protein signal transduction;0.00307531872065744!GO:0030027;lamellipodium;0.00334491452897091!GO:0018196;peptidyl-asparagine modification;0.0034642524294001!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0034642524294001!GO:0006405;RNA export from nucleus;0.00347067426303266!GO:0004004;ATP-dependent RNA helicase activity;0.00357926957802766!GO:0000075;cell cycle checkpoint;0.0035904978631984!GO:0030132;clathrin coat of coated pit;0.00363246494492668!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00375927646362098!GO:0015002;heme-copper terminal oxidase activity;0.00375927646362098!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00375927646362098!GO:0004129;cytochrome-c oxidase activity;0.00375927646362098!GO:0005773;vacuole;0.00375927646362098!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0037692892072649!GO:0031988;membrane-bound vesicle;0.00398250785571322!GO:0033116;ER-Golgi intermediate compartment membrane;0.00403894280308081!GO:0005741;mitochondrial outer membrane;0.00404603743044042!GO:0019867;outer membrane;0.00404720178494402!GO:0006520;amino acid metabolic process;0.0040933899343917!GO:0051252;regulation of RNA metabolic process;0.00418322175607966!GO:0006355;regulation of transcription, DNA-dependent;0.00424552335983588!GO:0031968;organelle outer membrane;0.00425805505068289!GO:0051325;interphase;0.00445882938318285!GO:0042802;identical protein binding;0.0044610312072228!GO:0065009;regulation of a molecular function;0.00457243066007596!GO:0030145;manganese ion binding;0.00474693896619294!GO:0006338;chromatin remodeling;0.00480651792692824!GO:0016363;nuclear matrix;0.00516165034926631!GO:0008361;regulation of cell size;0.00516735447399795!GO:0009165;nucleotide biosynthetic process;0.00518044519914127!GO:0007010;cytoskeleton organization and biogenesis;0.00549831539509096!GO:0051101;regulation of DNA binding;0.00563231587895463!GO:0003677;DNA binding;0.00564643139697367!GO:0000287;magnesium ion binding;0.0059061890076084!GO:0016251;general RNA polymerase II transcription factor activity;0.00610356286592369!GO:0016023;cytoplasmic membrane-bound vesicle;0.00611604622370759!GO:0019783;small conjugating protein-specific protease activity;0.0061176622359654!GO:0051098;regulation of binding;0.0061176622359654!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00620314868673467!GO:0000775;chromosome, pericentric region;0.00634253418251386!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00644444643978842!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00652588214219767!GO:0005637;nuclear inner membrane;0.00666612767112546!GO:0003711;transcription elongation regulator activity;0.00699261715026924!GO:0048487;beta-tubulin binding;0.00702554016262093!GO:0015631;tubulin binding;0.00709516435675!GO:0004298;threonine endopeptidase activity;0.00725561411202058!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00728931458972754!GO:0004843;ubiquitin-specific protease activity;0.00728931458972754!GO:0003678;DNA helicase activity;0.00788753759624202!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0082638366453298!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0082638366453298!GO:0030041;actin filament polymerization;0.00839224084030009!GO:0031901;early endosome membrane;0.00843685375799428!GO:0030134;ER to Golgi transport vesicle;0.00847023871514573!GO:0000786;nucleosome;0.00849589449037341!GO:0032259;methylation;0.00893812931372805!GO:0006612;protein targeting to membrane;0.00895241832269504!GO:0006595;polyamine metabolic process;0.00901930378058438!GO:0005657;replication fork;0.00907583135911624!GO:0016049;cell growth;0.00935589914863947!GO:0031982;vesicle;0.00936013045924717!GO:0043414;biopolymer methylation;0.00962461515779291!GO:0008094;DNA-dependent ATPase activity;0.00973139909453916!GO:0000082;G1/S transition of mitotic cell cycle;0.0101069360971434!GO:0008276;protein methyltransferase activity;0.0104931210237884!GO:0006730;one-carbon compound metabolic process;0.0106493009840089!GO:0000323;lytic vacuole;0.0107602317855731!GO:0005764;lysosome;0.0107602317855731!GO:0000118;histone deacetylase complex;0.0115656505671516!GO:0006302;double-strand break repair;0.0115789991156328!GO:0050681;androgen receptor binding;0.0117859718127845!GO:0006268;DNA unwinding during replication;0.0118614152421145!GO:0043284;biopolymer biosynthetic process;0.0125978143746674!GO:0000209;protein polyubiquitination;0.0126049742284113!GO:0043488;regulation of mRNA stability;0.0126391898258384!GO:0043487;regulation of RNA stability;0.0126391898258384!GO:0031124;mRNA 3'-end processing;0.0128434268429864!GO:0005684;U2-dependent spliceosome;0.0129103595505109!GO:0048500;signal recognition particle;0.0131792720147264!GO:0046483;heterocycle metabolic process;0.0131792720147264!GO:0006376;mRNA splice site selection;0.0131889607688191!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0131889607688191!GO:0030521;androgen receptor signaling pathway;0.0134736719242706!GO:0016301;kinase activity;0.0135173097756084!GO:0051059;NF-kappaB binding;0.0135338855066358!GO:0006289;nucleotide-excision repair;0.0136351041203344!GO:0046467;membrane lipid biosynthetic process;0.0136984848129299!GO:0005758;mitochondrial intermembrane space;0.0137918035494332!GO:0008022;protein C-terminus binding;0.0140433464234752!GO:0032200;telomere organization and biogenesis;0.0140433464234752!GO:0000723;telomere maintenance;0.0140433464234752!GO:0031625;ubiquitin protein ligase binding;0.0142943720135492!GO:0005791;rough endoplasmic reticulum;0.0143751158626493!GO:0030176;integral to endoplasmic reticulum membrane;0.0144009167380738!GO:0008017;microtubule binding;0.0144540338976262!GO:0031410;cytoplasmic vesicle;0.0147182432400151!GO:0017166;vinculin binding;0.0151961412735327!GO:0016272;prefoldin complex;0.0152603043793216!GO:0004221;ubiquitin thiolesterase activity;0.0154406703205623!GO:0006778;porphyrin metabolic process;0.0156242430373246!GO:0033013;tetrapyrrole metabolic process;0.0156242430373246!GO:0048037;cofactor binding;0.0156685290642852!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0157745935716081!GO:0031970;organelle envelope lumen;0.0162645088311738!GO:0051287;NAD binding;0.0167346906334158!GO:0005862;muscle thin filament tropomyosin;0.01687171101365!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0170183171613118!GO:0010257;NADH dehydrogenase complex assembly;0.0170183171613118!GO:0033108;mitochondrial respiratory chain complex assembly;0.0170183171613118!GO:0030658;transport vesicle membrane;0.0171476122192549!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0174901476380871!GO:0006891;intra-Golgi vesicle-mediated transport;0.0176548701177975!GO:0000776;kinetochore;0.017848374426299!GO:0016790;thiolester hydrolase activity;0.0179064629240315!GO:0005083;small GTPase regulator activity;0.0188116581411295!GO:0050662;coenzyme binding;0.0189262917820999!GO:0030518;steroid hormone receptor signaling pathway;0.0190608883697276!GO:0032561;guanyl ribonucleotide binding;0.0196906354999665!GO:0019001;guanyl nucleotide binding;0.0196906354999665!GO:0000792;heterochromatin;0.0198818718727997!GO:0030032;lamellipodium biogenesis;0.0203331725570253!GO:0000781;chromosome, telomeric region;0.020377267676576!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.020377267676576!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0207317250555928!GO:0009303;rRNA transcription;0.0208188519658894!GO:0009451;RNA modification;0.0210003144457803!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0213749434991603!GO:0003756;protein disulfide isomerase activity;0.0213781933595483!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0213781933595483!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0214219041334776!GO:0043022;ribosome binding;0.0218342625663316!GO:0030127;COPII vesicle coat;0.0219462567456337!GO:0012507;ER to Golgi transport vesicle membrane;0.0219462567456337!GO:0016584;nucleosome positioning;0.0219462567456337!GO:0030508;thiol-disulfide exchange intermediate activity;0.0225807008634504!GO:0040029;regulation of gene expression, epigenetic;0.0229808207978888!GO:0046474;glycerophospholipid biosynthetic process;0.0232457577214121!GO:0007021;tubulin folding;0.0233325561207105!GO:0005832;chaperonin-containing T-complex;0.0235057348005167!GO:0001726;ruffle;0.0235057348005167!GO:0000096;sulfur amino acid metabolic process;0.0237837785746176!GO:0007243;protein kinase cascade;0.0240991686354623!GO:0005669;transcription factor TFIID complex;0.0242409133225432!GO:0030036;actin cytoskeleton organization and biogenesis;0.0244685190599608!GO:0030118;clathrin coat;0.0246201657218898!GO:0004860;protein kinase inhibitor activity;0.0255086385285198!GO:0007051;spindle organization and biogenesis;0.0255086385285198!GO:0051540;metal cluster binding;0.0255582879807623!GO:0051536;iron-sulfur cluster binding;0.0255582879807623!GO:0045767;regulation of anti-apoptosis;0.0255629368101852!GO:0031406;carboxylic acid binding;0.0258570448259786!GO:0051539;4 iron, 4 sulfur cluster binding;0.0260369293673694!GO:0043433;negative regulation of transcription factor activity;0.0263093049617205!GO:0006378;mRNA polyadenylation;0.0264092819662717!GO:0003702;RNA polymerase II transcription factor activity;0.0265925519293225!GO:0008629;induction of apoptosis by intracellular signals;0.0266150420047977!GO:0016197;endosome transport;0.0266306787479637!GO:0006118;electron transport;0.027477462089312!GO:0031057;negative regulation of histone modification;0.0275630220051001!GO:0035067;negative regulation of histone acetylation;0.0275630220051001!GO:0016569;covalent chromatin modification;0.0275630220051001!GO:0016407;acetyltransferase activity;0.0280598302343711!GO:0005874;microtubule;0.0289841751946476!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0292098148952027!GO:0016311;dephosphorylation;0.0292781818470175!GO:0005732;small nucleolar ribonucleoprotein complex;0.0294494187805499!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0303152108669595!GO:0006275;regulation of DNA replication;0.0305119882731307!GO:0032940;secretion by cell;0.0308497457052242!GO:0009083;branched chain family amino acid catabolic process;0.0312747831532902!GO:0030911;TPR domain binding;0.0314478520751995!GO:0016791;phosphoric monoester hydrolase activity;0.0316888755484012!GO:0004527;exonuclease activity;0.0322754064703645!GO:0042168;heme metabolic process;0.0323207113887885!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0336125921828127!GO:0030660;Golgi-associated vesicle membrane;0.0336891035275227!GO:0016581;NuRD complex;0.0336891035275227!GO:0042769;DNA damage response, detection of DNA damage;0.0342306006354078!GO:0004518;nuclease activity;0.0350343305578392!GO:0016279;protein-lysine N-methyltransferase activity;0.0350343305578392!GO:0018024;histone-lysine N-methyltransferase activity;0.0350343305578392!GO:0016278;lysine N-methyltransferase activity;0.0350343305578392!GO:0008312;7S RNA binding;0.0351408762274271!GO:0030029;actin filament-based process;0.0352098100387141!GO:0000123;histone acetyltransferase complex;0.0352688250657343!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0357439372573549!GO:0033130;acetylcholine receptor binding;0.0360271083720645!GO:0006779;porphyrin biosynthetic process;0.0366775226434274!GO:0033014;tetrapyrrole biosynthetic process;0.0366775226434274!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0371447909204985!GO:0045047;protein targeting to ER;0.0371447909204985!GO:0030913;paranodal junction assembly;0.0376898979892367!GO:0032288;myelin formation;0.0376898979892367!GO:0005996;monosaccharide metabolic process;0.0390636253120522!GO:0042770;DNA damage response, signal transduction;0.0391062799508718!GO:0033673;negative regulation of kinase activity;0.0391928236462065!GO:0006469;negative regulation of protein kinase activity;0.0391928236462065!GO:0032780;negative regulation of ATPase activity;0.0393373600779722!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0395034739519601!GO:0031123;RNA 3'-end processing;0.0399657451137224!GO:0019318;hexose metabolic process;0.0399657451137224!GO:0031365;N-terminal protein amino acid modification;0.0405526837752275!GO:0032318;regulation of Ras GTPase activity;0.0408252426392703!GO:0031902;late endosome membrane;0.0417321339810336!GO:0048468;cell development;0.0423444702262733!GO:0050178;phenylpyruvate tautomerase activity;0.0431310452341617!GO:0046426;negative regulation of JAK-STAT cascade;0.0434045383759737!GO:0004239;methionyl aminopeptidase activity;0.0437785628318332!GO:0009081;branched chain family amino acid metabolic process;0.0442455791157256!GO:0042054;histone methyltransferase activity;0.0460248322649615!GO:0008170;N-methyltransferase activity;0.0467262428251935!GO:0008047;enzyme activator activity;0.0467939899445303!GO:0006564;L-serine biosynthetic process;0.0469096389966474!GO:0005869;dynactin complex;0.0470565698464524!GO:0007004;telomere maintenance via telomerase;0.0472872799355177!GO:0000159;protein phosphatase type 2A complex;0.0473371283429595!GO:0046489;phosphoinositide biosynthetic process;0.0486666728423209!GO:0051348;negative regulation of transferase activity;0.0496401003305166 | |||
|sample_id=10597 | |sample_id=10597 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=PITX1..3:1.84078567691;HMGA1,2:1.72019646625;ADNP_IRX_SIX_ZHX:1.61910714879;EGR1..3:1.49454199658;GCM1,2:1.38135648809;TFDP1:1.32433082855;ESRRA:1.31617741118;HOX{A5,B5}:1.30856364069;POU1F1:1.26589574576;FOXQ1:1.22809722923;FOXA2:1.18578666018;TP53:1.0371773101;TFAP2B:0.965205275258;RORA:0.959468958011;RBPJ:0.944284741292;PATZ1:0.932663991998;NR5A1,2:0.908833252426;PPARG:0.904322057135;TAL1_TCF{3,4,12}:0.89789561618;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.879687585382;SOX17:0.84729996512;BREu{core}:0.832812634028;HIC1:0.804192141541;MTE{core}:0.790770722788;CUX2:0.749236257553;PDX1:0.729860388281;ZFP161:0.702353727328;HBP1_HMGB_SSRP1_UBTF:0.680669541663;ALX1:0.673572275474;TEAD1:0.658039071204;ZBTB16:0.63089119049;FOX{F1,F2,J1}:0.620856895753;LEF1_TCF7_TCF7L1,2:0.61536421138;ZNF143:0.598784548399;OCT4_SOX2{dimer}:0.597532587414;CDC5L:0.592522224241;PAX8:0.574255898088;HLF:0.5371828416;NR6A1:0.531985215979;NRF1:0.525748608852;CDX1,2,4:0.524014320671;ONECUT1,2:0.514257098539;SOX{8,9,10}:0.511458850445;PAX4:0.51000190017;CRX:0.495985441323;XCPE1{core}:0.494665550262;HOX{A6,A7,B6,B7}:0.483255376587;MYB:0.450875452772;HOXA9_MEIS1:0.444668734779;POU5F1:0.444089088112;NKX2-1,4:0.41039311464;SOX5:0.39357706223;FOXP1:0.39202780505;FOXN1:0.361262853717;MTF1:0.353723823162;NKX2-3_NKX2-5:0.351067977244;NHLH1,2:0.325338101534;MED-1{core}:0.286011383579;GFI1B:0.280639378524;POU3F1..4:0.275219818673;FOX{I1,J2}:0.270374266729;NKX6-1,2:0.221309159551;HAND1,2:0.213505365117;MEF2{A,B,C,D}:0.20348197696;ATF4:0.196824127197;SP1:0.195870619009;NR1H4:0.184102202531;MAZ:0.170689240872;MYOD1:0.168712506772;IKZF2:0.156467374982;XBP1:0.141839588985;STAT5{A,B}:0.141416721935;CEBPA,B_DDIT3:0.129187718419;TFCP2:0.129012552353;FOXL1:0.113767340907;GATA6:0.10973360316;MYBL2:0.101722089503;TFAP4:0.092339511338;VSX1,2:0.0821663001342;DBP:0.0739070910444;AIRE:0.0695921558673;GTF2A1,2:0.0555385132297;E2F1..5:0.0549797390125;HNF1A:0.0468805722453;ZEB1:0.0247628110458;NKX3-2:-0.00111101979199;RREB1:-0.00542254491067;HOX{A4,D4}:-0.0134742213388;YY1:-0.028948347667;PBX1:-0.0362966415699;RXR{A,B,G}:-0.0456093683283;LHX3,4:-0.0511266135726;TLX1..3_NFIC{dimer}:-0.0559227710673;POU6F1:-0.0603308634767;REST:-0.0838165092552;PAX3,7:-0.100203122769;EP300:-0.10601668661;EN1,2:-0.111757854537;LMO2:-0.119258525211;SOX2:-0.125248965859;SNAI1..3:-0.125802698236;NFIL3:-0.14926882376;PAX1,9:-0.150374724637;NFATC1..3:-0.159551543716;STAT2,4,6:-0.163174324621;NFIX:-0.163867189735;TFAP2{A,C}:-0.180778424575;ATF2:-0.18385912327;JUN:-0.194772505759;EVI1:-0.20253126313;FOS_FOS{B,L1}_JUN{B,D}:-0.20604404864;FOXD3:-0.210321426584;HES1:-0.217549274775;TGIF1:-0.221633321782;HNF4A_NR2F1,2:-0.228785490462;GTF2I:-0.233196950962;POU2F1..3:-0.233746840496;NFE2:-0.233930719451;TEF:-0.245752595412;PRRX1,2:-0.260956980618;RFX2..5_RFXANK_RFXAP:-0.268997415403;FOXP3:-0.275658881831;NKX2-2,8:-0.32745271813;SPIB:-0.327500542536;RFX1:-0.339482163282;SREBF1,2:-0.35028968303;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.358909830611;AR:-0.361857060293;MYFfamily:-0.370216005863;NFY{A,B,C}:-0.373887022648;FOX{D1,D2}:-0.397721484145;ELK1,4_GABP{A,B1}:-0.399969824301;NANOG:-0.403960492302;CREB1:-0.408969741362;GATA4:-0.420461460373;EBF1:-0.427585579751;FOSL2:-0.434747087824;BACH2:-0.436079650401;NFKB1_REL_RELA:-0.437983938694;ZNF423:-0.449240378495;ZBTB6:-0.454544448015;GFI1:-0.466875306736;RUNX1..3:-0.467672265214;MZF1:-0.477511837606;NFE2L2:-0.480603859025;ATF5_CREB3:-0.496282567087;NANOG{mouse}:-0.519569827545;PRDM1:-0.531091637732;ZNF238:-0.544599466954;ARID5B:-0.546744661389;BPTF:-0.548021177128;bHLH_family:-0.551691653304;TOPORS:-0.571309634494;NFE2L1:-0.580325819648;SPI1:-0.598840679974;GLI1..3:-0.607760675177;UFEwm:-0.611707067402;ETS1,2:-0.637549964584;TBX4,5:-0.640234326402;PAX5:-0.681746129611;IRF7:-0.692384049651;NR3C1:-0.701214135599;FOXM1:-0.74488418238;KLF4:-0.759740633889;AHR_ARNT_ARNT2:-0.762053617738;ZNF148:-0.799942876323;ZIC1..3:-0.803349785615;FOXO1,3,4:-0.840319668223;STAT1,3:-0.880659460403;ZNF384:-0.887353983569;RXRA_VDR{dimer}:-0.898137929647;ESR1:-0.902475543423;IKZF1:-0.912298841643;PAX6:-0.93650221305;DMAP1_NCOR{1,2}_SMARC:-0.95533234089;SRF:-0.957904259434;SMAD1..7,9:-1.07153347155;GZF1:-1.12742067455;ELF1,2,4:-1.19844188556;PAX2:-1.20373342276;MAFB:-1.20668998777;ATF6:-1.23075848351;IRF1,2:-1.23946047831;TBP:-1.26561516098;HSF1,2:-1.29094347835;NKX3-1:-1.37708562239;HMX1:-1.40875130954;T:-1.41490722062;HIF1A:-1.41657117273;ALX4:-1.58690508996;TLX2:-1.77637156968;SPZ1:-2.22936277191 | |top_motifs=PITX1..3:1.84078567691;HMGA1,2:1.72019646625;ADNP_IRX_SIX_ZHX:1.61910714879;EGR1..3:1.49454199658;GCM1,2:1.38135648809;TFDP1:1.32433082855;ESRRA:1.31617741118;HOX{A5,B5}:1.30856364069;POU1F1:1.26589574576;FOXQ1:1.22809722923;FOXA2:1.18578666018;TP53:1.0371773101;TFAP2B:0.965205275258;RORA:0.959468958011;RBPJ:0.944284741292;PATZ1:0.932663991998;NR5A1,2:0.908833252426;PPARG:0.904322057135;TAL1_TCF{3,4,12}:0.89789561618;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.879687585382;SOX17:0.84729996512;BREu{core}:0.832812634028;HIC1:0.804192141541;MTE{core}:0.790770722788;CUX2:0.749236257553;PDX1:0.729860388281;ZFP161:0.702353727328;HBP1_HMGB_SSRP1_UBTF:0.680669541663;ALX1:0.673572275474;TEAD1:0.658039071204;ZBTB16:0.63089119049;FOX{F1,F2,J1}:0.620856895753;LEF1_TCF7_TCF7L1,2:0.61536421138;ZNF143:0.598784548399;OCT4_SOX2{dimer}:0.597532587414;CDC5L:0.592522224241;PAX8:0.574255898088;HLF:0.5371828416;NR6A1:0.531985215979;NRF1:0.525748608852;CDX1,2,4:0.524014320671;ONECUT1,2:0.514257098539;SOX{8,9,10}:0.511458850445;PAX4:0.51000190017;CRX:0.495985441323;XCPE1{core}:0.494665550262;HOX{A6,A7,B6,B7}:0.483255376587;MYB:0.450875452772;HOXA9_MEIS1:0.444668734779;POU5F1:0.444089088112;NKX2-1,4:0.41039311464;SOX5:0.39357706223;FOXP1:0.39202780505;FOXN1:0.361262853717;MTF1:0.353723823162;NKX2-3_NKX2-5:0.351067977244;NHLH1,2:0.325338101534;MED-1{core}:0.286011383579;GFI1B:0.280639378524;POU3F1..4:0.275219818673;FOX{I1,J2}:0.270374266729;NKX6-1,2:0.221309159551;HAND1,2:0.213505365117;MEF2{A,B,C,D}:0.20348197696;ATF4:0.196824127197;SP1:0.195870619009;NR1H4:0.184102202531;MAZ:0.170689240872;MYOD1:0.168712506772;IKZF2:0.156467374982;XBP1:0.141839588985;STAT5{A,B}:0.141416721935;CEBPA,B_DDIT3:0.129187718419;TFCP2:0.129012552353;FOXL1:0.113767340907;GATA6:0.10973360316;MYBL2:0.101722089503;TFAP4:0.092339511338;VSX1,2:0.0821663001342;DBP:0.0739070910444;AIRE:0.0695921558673;GTF2A1,2:0.0555385132297;E2F1..5:0.0549797390125;HNF1A:0.0468805722453;ZEB1:0.0247628110458;NKX3-2:-0.00111101979199;RREB1:-0.00542254491067;HOX{A4,D4}:-0.0134742213388;YY1:-0.028948347667;PBX1:-0.0362966415699;RXR{A,B,G}:-0.0456093683283;LHX3,4:-0.0511266135726;TLX1..3_NFIC{dimer}:-0.0559227710673;POU6F1:-0.0603308634767;REST:-0.0838165092552;PAX3,7:-0.100203122769;EP300:-0.10601668661;EN1,2:-0.111757854537;LMO2:-0.119258525211;SOX2:-0.125248965859;SNAI1..3:-0.125802698236;NFIL3:-0.14926882376;PAX1,9:-0.150374724637;NFATC1..3:-0.159551543716;STAT2,4,6:-0.163174324621;NFIX:-0.163867189735;TFAP2{A,C}:-0.180778424575;ATF2:-0.18385912327;JUN:-0.194772505759;EVI1:-0.20253126313;FOS_FOS{B,L1}_JUN{B,D}:-0.20604404864;FOXD3:-0.210321426584;HES1:-0.217549274775;TGIF1:-0.221633321782;HNF4A_NR2F1,2:-0.228785490462;GTF2I:-0.233196950962;POU2F1..3:-0.233746840496;NFE2:-0.233930719451;TEF:-0.245752595412;PRRX1,2:-0.260956980618;RFX2..5_RFXANK_RFXAP:-0.268997415403;FOXP3:-0.275658881831;NKX2-2,8:-0.32745271813;SPIB:-0.327500542536;RFX1:-0.339482163282;SREBF1,2:-0.35028968303;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.358909830611;AR:-0.361857060293;MYFfamily:-0.370216005863;NFY{A,B,C}:-0.373887022648;FOX{D1,D2}:-0.397721484145;ELK1,4_GABP{A,B1}:-0.399969824301;NANOG:-0.403960492302;CREB1:-0.408969741362;GATA4:-0.420461460373;EBF1:-0.427585579751;FOSL2:-0.434747087824;BACH2:-0.436079650401;NFKB1_REL_RELA:-0.437983938694;ZNF423:-0.449240378495;ZBTB6:-0.454544448015;GFI1:-0.466875306736;RUNX1..3:-0.467672265214;MZF1:-0.477511837606;NFE2L2:-0.480603859025;ATF5_CREB3:-0.496282567087;NANOG{mouse}:-0.519569827545;PRDM1:-0.531091637732;ZNF238:-0.544599466954;ARID5B:-0.546744661389;BPTF:-0.548021177128;bHLH_family:-0.551691653304;TOPORS:-0.571309634494;NFE2L1:-0.580325819648;SPI1:-0.598840679974;GLI1..3:-0.607760675177;UFEwm:-0.611707067402;ETS1,2:-0.637549964584;TBX4,5:-0.640234326402;PAX5:-0.681746129611;IRF7:-0.692384049651;NR3C1:-0.701214135599;FOXM1:-0.74488418238;KLF4:-0.759740633889;AHR_ARNT_ARNT2:-0.762053617738;ZNF148:-0.799942876323;ZIC1..3:-0.803349785615;FOXO1,3,4:-0.840319668223;STAT1,3:-0.880659460403;ZNF384:-0.887353983569;RXRA_VDR{dimer}:-0.898137929647;ESR1:-0.902475543423;IKZF1:-0.912298841643;PAX6:-0.93650221305;DMAP1_NCOR{1,2}_SMARC:-0.95533234089;SRF:-0.957904259434;SMAD1..7,9:-1.07153347155;GZF1:-1.12742067455;ELF1,2,4:-1.19844188556;PAX2:-1.20373342276;MAFB:-1.20668998777;ATF6:-1.23075848351;IRF1,2:-1.23946047831;TBP:-1.26561516098;HSF1,2:-1.29094347835;NKX3-1:-1.37708562239;HMX1:-1.40875130954;T:-1.41490722062;HIF1A:-1.41657117273;ALX4:-1.58690508996;TLX2:-1.77637156968;SPZ1:-2.22936277191 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10597-108E3;search_select_hide=table117:FF:10597-108E3 | |||
}} | }} | ||
Latest revision as of 14:30, 3 June 2020
| Name: | Wilms' tumor cell line:HFWT |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11728 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11728
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11728
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.599 |
| 10 | 10 | 0.017 |
| 100 | 100 | 0.445 |
| 101 | 101 | 0.542 |
| 102 | 102 | 0.632 |
| 103 | 103 | 0.7 |
| 104 | 104 | 0.507 |
| 105 | 105 | 0.178 |
| 106 | 106 | 0.0568 |
| 107 | 107 | 0.798 |
| 108 | 108 | 0.939 |
| 109 | 109 | 0.24 |
| 11 | 11 | 0.177 |
| 110 | 110 | 0.241 |
| 111 | 111 | 0.449 |
| 112 | 112 | 0.502 |
| 113 | 113 | 0.379 |
| 114 | 114 | 0.546 |
| 115 | 115 | 0.183 |
| 116 | 116 | 0.23 |
| 117 | 117 | 0.146 |
| 118 | 118 | 0.944 |
| 119 | 119 | 0.766 |
| 12 | 12 | 0.257 |
| 120 | 120 | 0.639 |
| 121 | 121 | 0.356 |
| 122 | 122 | 0.694 |
| 123 | 123 | 0.0139 |
| 124 | 124 | 0.512 |
| 125 | 125 | 0.384 |
| 126 | 126 | 0.628 |
| 127 | 127 | 0.338 |
| 128 | 128 | 0.998 |
| 129 | 129 | 0.494 |
| 13 | 13 | 0.243 |
| 130 | 130 | 0.987 |
| 131 | 131 | 0.718 |
| 132 | 132 | 0.837 |
| 133 | 133 | 0.00403 |
| 134 | 134 | 0.986 |
| 135 | 135 | 0.242 |
| 136 | 136 | 0.968 |
| 137 | 137 | 0.225 |
| 138 | 138 | 0.947 |
| 139 | 139 | 0.132 |
| 14 | 14 | 0.525 |
| 140 | 140 | 0.376 |
| 141 | 141 | 0.803 |
| 142 | 142 | 0.948 |
| 143 | 143 | 0.71 |
| 144 | 144 | 0.791 |
| 145 | 145 | 0.656 |
| 146 | 146 | 0.839 |
| 147 | 147 | 0.605 |
| 148 | 148 | 0.00266 |
| 149 | 149 | 0.202 |
| 15 | 15 | 0.755 |
| 150 | 150 | 0.335 |
| 151 | 151 | 0.541 |
| 152 | 152 | 0.161 |
| 153 | 153 | 0.669 |
| 154 | 154 | 0.751 |
| 155 | 155 | 0.215 |
| 156 | 156 | 0.374 |
| 157 | 157 | 0.26 |
| 158 | 158 | 0.36 |
| 159 | 159 | 0.767 |
| 16 | 16 | 0.107 |
| 160 | 160 | 0.0709 |
| 161 | 161 | 0.376 |
| 162 | 162 | 0.72 |
| 163 | 163 | 0.389 |
| 164 | 164 | 0.713 |
| 165 | 165 | 0.854 |
| 166 | 166 | 0.975 |
| 167 | 167 | 0.675 |
| 168 | 168 | 0.216 |
| 169 | 169 | 0.0416 |
| 17 | 17 | 0.812 |
| 18 | 18 | 0.108 |
| 19 | 19 | 0.12 |
| 2 | 2 | 0.0997 |
| 20 | 20 | 0.622 |
| 21 | 21 | 0.705 |
| 22 | 22 | 0.274 |
| 23 | 23 | 0.292 |
| 24 | 24 | 0.209 |
| 25 | 25 | 0.0271 |
| 26 | 26 | 0.829 |
| 27 | 27 | 0.441 |
| 28 | 28 | 0.677 |
| 29 | 29 | 0.252 |
| 3 | 3 | 0.295 |
| 30 | 30 | 0.357 |
| 31 | 31 | 0.589 |
| 32 | 32 | 0.00504 |
| 33 | 33 | 0.334 |
| 34 | 34 | 0.892 |
| 35 | 35 | 0.158 |
| 36 | 36 | 0.143 |
| 37 | 37 | 0.0116 |
| 38 | 38 | 0.662 |
| 39 | 39 | 0.373 |
| 4 | 4 | 0.166 |
| 40 | 40 | 0.488 |
| 41 | 41 | 0.495 |
| 42 | 42 | 0.526 |
| 43 | 43 | 0.243 |
| 44 | 44 | 0.0829 |
| 45 | 45 | 0.897 |
| 46 | 46 | 0.94 |
| 47 | 47 | 0.379 |
| 48 | 48 | 0.285 |
| 49 | 49 | 0.72 |
| 5 | 5 | 0.809 |
| 50 | 50 | 0.93 |
| 51 | 51 | 0.597 |
| 52 | 52 | 0.257 |
| 53 | 53 | 0.837 |
| 54 | 54 | 0.503 |
| 55 | 55 | 0.16 |
| 56 | 56 | 0.773 |
| 57 | 57 | 0.0865 |
| 58 | 58 | 0.00551 |
| 59 | 59 | 0.0897 |
| 6 | 6 | 0.727 |
| 60 | 60 | 0.00458 |
| 61 | 61 | 0.911 |
| 62 | 62 | 0.00212 |
| 63 | 63 | 0.739 |
| 64 | 64 | 0.551 |
| 65 | 65 | 0.651 |
| 66 | 66 | 0.179 |
| 67 | 67 | 0.143 |
| 68 | 68 | 0.833 |
| 69 | 69 | 0.711 |
| 7 | 7 | 0.226 |
| 70 | 70 | 0.368 |
| 71 | 71 | 0.0138 |
| 72 | 72 | 0.301 |
| 73 | 73 | 0.0838 |
| 74 | 74 | 0.949 |
| 75 | 75 | 0.132 |
| 76 | 76 | 0.835 |
| 77 | 77 | 0.037 |
| 78 | 78 | 0.636 |
| 79 | 79 | 0.0145 |
| 8 | 8 | 0.739 |
| 80 | 80 | 0.537 |
| 81 | 81 | 0.852 |
| 82 | 82 | 0.305 |
| 83 | 83 | 0.94 |
| 84 | 84 | 0.721 |
| 85 | 85 | 0.127 |
| 86 | 86 | 0.617 |
| 87 | 87 | 0.637 |
| 88 | 88 | 0.747 |
| 89 | 89 | 0.0215 |
| 9 | 9 | 0.0407 |
| 90 | 90 | 0.556 |
| 91 | 91 | 0.699 |
| 92 | 92 | 0.419 |
| 93 | 93 | 0.687 |
| 94 | 94 | 0.891 |
| 95 | 95 | 0.202 |
| 96 | 96 | 0.523 |
| 97 | 97 | 0.922 |
| 98 | 98 | 0.0972 |
| 99 | 99 | 0.348 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11728
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103192 renal cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100067 (kidney cell line sample)
0103192 (renal cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)
