FF:10604-108F1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005594 | ||
|accession_numbers=CAGE;DRX007872;DRR008744;DRZ000169;DRZ001554;DRZ011519;DRZ012904 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001264,UBERON:0002100,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100669 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0100669 | |fonse_cell_line=FF:0100669 | ||
|fonse_cell_line_closure=FF:0100669 | |fonse_cell_line_closure=FF:0100669 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1B2C6.CNhs11731.10604-108F1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1B2C6.CNhs11731.10604-108F1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1B2C6.CNhs11731.10604-108F1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1B2C6.CNhs11731.10604-108F1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1B2C6.CNhs11731.10604-108F1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10604-108F1 | |id=FF:10604-108F1 | ||
|is_a=EFO:0002091 | |is_a=EFO:0002091;;FF:0000210;;FF:0100669;;UBERON:0001264 | ||
|is_obsolete= | |||
|library_id=CNhs11731 | |||
|library_id_phase_based=2:CNhs11731 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10604 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10604 | |||
|name=embryonic pancreas cell line:1B2C6 | |name=embryonic pancreas cell line:1B2C6 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11731,LSID819,release009,COMPLETED | |profile_hcage=CNhs11731,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.206908840717904,0,0.0716257388018053,0.250469591473958,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,0.0883673556909993,0,0,0,0,0,0,0,0,0,0,0.221323945469862,0,0.202885370014109,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0891841019013865,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.367226870804291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1213886268687,0.110661972734931,0,0,0.239364572675909,0.0269257115493217,0,0,0.110661972734931,0,-0.0980353512377064,0.353572586457447,0,0,0,0,0,0,0,0,0,0,0.110661972734931,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.0474141938481326,0.148457991878249,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0.221323945469862,0,0,0.221323945469862,0,0,0,0,-0.0258549298157028,0,-0.106859347947718,0.0778088029463897,0,0,-0.0784939999294493,0,0.367226870804291,0,0.06326096223936,0,0,0,0,0,0.0932040785172969,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,-0.063596088414579,-0.0683442610773682,0,0,0,0,-0.270240669334324,0,-0.120879483793741,-0.0827201683234173,-0.115523743869133,-0.416097595050718,-0.055712496781182,0,0,0,-0.348919645128589,-0.134914020971654,0,0,-0.121779851751874,0.381967150317561,0,0,-0.391044581551635,0,-0.203452322518632,-0.0334291718979135,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.105664651209107,0,0,0.221323945469862,0,0.281524384912835,0,0,1.09771372454531,0.0975948943194297,-0.00294249814657094,-0.00453183407797464,0,-0.302389727009913,-0.08098674264079,-0.007744376584605,0.134981186697511,-0.147401849371139,-0.189981719549847,0,0.128709618300116,0.0577000530143349,-0.0296436646978049,0.1213886268687,-0.00176056402468616,-0.864181637482814,0.262083147234695,0,0,0,-0.288897558747048,0,0,-0.490114714476774,0.392543570616208,-0.103764624826821,0.223510807166488,0.47667919287692,0.328948465140619,0.0711294442782605,0.0188097755937863,0,0.0652128955480864,0.1087012797269,0,0,-0.0266328533936964,0.167163308471176,0.184700583441083,0,-0.11675059100669,0.152979684392493,0,-0.0338212905890888,0.307232525540583,0,0,0.173469264562298,0,0,0,0,0,-0.136033980287397,0.158427618068929,-0.232855561555545,0,0.0718657933343745,0,-0.0156276959134765,0,-0.0434179167783642,0.0191531838590561,-0.298074152361292,0.0919292744119331,0,0.0073267344784087,0.0555846264855969,0.0978073461134397,0.0538514230986435,0.577365468507359,0.189191412793094,-0.0725683564311411,0.239364572675909,-0.225623095912006,0.0128553781142564,-0.0881268324752877,0.157064845015325,0.100554823998304,0.386248172480276,0.169479057158812,0.00355309056516651,0,0.251150334956217,0,0.0842451273262093,0,0.18578017343493,-0.54043375147324,-0.0720625037763957,-0.153232394281193,0,0.19560935186013,-0.566806992304112,0,0.104687657087104,0.00263461843720149,0.221323945469862,0.325879145155742,0.255379449065916,0.0264726863806015,0.155285951457881,0.0604516087282435,0.299793733428725,0,0,0.148341885190787,-0.0141520922945271,0,0.520057583061102,0.191323842406366,-0.236989170391004,0.105352872034928,0,0,-0.424376392522863,0,0,-0.60592806381803,0.138087373196843,0.51466229933915,-0.0320023960168941,0,0.0749906259478895,0,0,-0.177527765965176,0,0.266970043025154,0,0,-0.139219323863893,-0.116628112990133,0,0,0,0.0303621661318027,0,0,0,0,0,0,0,0.077312102267294,0.0123935405878425,0,0.21527957422836,0,0,0,0,0,0,0,0,-0.330330873766604,-0.0405793422855208,-0.12301741567642,0.221323945469862,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0.110661972734931,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.146960544740095,0,0,0,0.707145172914894,0,0,0,0,-0.060951119237225,0,0,0,0,-0.0938669639134024,-0.0815818795468414,0,0.114259816092748,-0.668358476742528,0.272677351536021,0,0.221323945469862,0.490899363643823,0,0,-0.668717450828957,0.284856647838624,0,0.0633018003241305,0,0,0,0,0.221323945469862,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.446152834849005,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.09623226213503,0,0,0,0,0,0.367226870804291,0,0,-0.104199068858952,0.110661972734931,0,0,0,0,-0.0969923612426051,0,0,0,0,0.500939182947917,0,0,0.788384171908286,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.0716257388018053,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.107439571760884,0,0,0,0.371449843701225,0,0.206908840717904,0,0,0,0,0,0,0.110661972734931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136264751057273,0,0,0.247939919756491,0,0,0.0852777950265505,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0768428825800505,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.415667884846574,-0.283220399823148,0.159107609789251,0,0,0,0.129227862919691,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0.110661972734931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0766506094595145,0.221323945469862,0,0,0,0,0,0,0.367226870804291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.263159998833337,0,0,0,0,0,0,0.367226870804291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221323945469862,0,0,0,0.395097889669367,0,0,0,0,0,0,0,0,0.221323945469862,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.183277171711422,0,0,0,0,0.428609117829462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.158217749767426,0,0,0,0,0,0,0,0,0,0,0,0,0.160003766319735,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0508483713486658,0.148457991878249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=38.44177 | |rna_weight_ug=38.44177 | ||
|sample_age=19 week embryo | |sample_age=19 week embryo | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0795 | |sample_cell_catalog=RCB0795 | ||
|sample_cell_line=1B2C6 | |sample_cell_line=1B2C6 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.69577436709169e-251!GO:0043226;organelle;8.99250353280239e-209!GO:0043229;intracellular organelle;2.97928827918121e-208!GO:0043231;intracellular membrane-bound organelle;4.14129289665921e-204!GO:0043227;membrane-bound organelle;6.30140549518968e-204!GO:0005737;cytoplasm;8.27994630606563e-171!GO:0044422;organelle part;4.51218487823199e-139!GO:0044446;intracellular organelle part;1.0776287338372e-137!GO:0044444;cytoplasmic part;1.34491389251218e-113!GO:0032991;macromolecular complex;2.10731161524221e-100!GO:0005634;nucleus;1.11766527216339e-98!GO:0044237;cellular metabolic process;3.2338039160155e-92!GO:0044238;primary metabolic process;9.28044200870105e-91!GO:0043170;macromolecule metabolic process;9.48668221128812e-91!GO:0030529;ribonucleoprotein complex;1.35680705647493e-86!GO:0044428;nuclear part;6.91043821801558e-81!GO:0003723;RNA binding;5.67798287145057e-79!GO:0043233;organelle lumen;1.36041607629128e-72!GO:0031974;membrane-enclosed lumen;1.36041607629128e-72!GO:0005515;protein binding;6.36289174137693e-70!GO:0043283;biopolymer metabolic process;7.74107743412973e-59!GO:0005739;mitochondrion;4.61038680183455e-57!GO:0006396;RNA processing;1.81484171055956e-52!GO:0016043;cellular component organization and biogenesis;1.82281206945047e-52!GO:0006412;translation;1.68988834748525e-51!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.65351895399309e-51!GO:0010467;gene expression;1.83257933334924e-50!GO:0043234;protein complex;6.15083489182439e-50!GO:0019538;protein metabolic process;8.38526094102166e-50!GO:0005840;ribosome;1.03336316256454e-49!GO:0031981;nuclear lumen;9.75367113018072e-49!GO:0044260;cellular macromolecule metabolic process;1.16041451080729e-45!GO:0044267;cellular protein metabolic process;2.2624690643664e-45!GO:0031090;organelle membrane;1.61272106001583e-43!GO:0003735;structural constituent of ribosome;2.45903025939395e-43!GO:0016071;mRNA metabolic process;6.52688674076317e-42!GO:0015031;protein transport;9.90671215614778e-40!GO:0033036;macromolecule localization;1.02908924759296e-39!GO:0043228;non-membrane-bound organelle;4.46855004054343e-38!GO:0043232;intracellular non-membrane-bound organelle;4.46855004054343e-38!GO:0006259;DNA metabolic process;5.33015766502596e-38!GO:0009059;macromolecule biosynthetic process;5.71563199006433e-38!GO:0033279;ribosomal subunit;1.30031786979677e-37!GO:0008380;RNA splicing;5.30918864085633e-37!GO:0044249;cellular biosynthetic process;3.2182847243732e-36!GO:0031967;organelle envelope;6.64456922397753e-36!GO:0045184;establishment of protein localization;7.50535271674279e-36!GO:0031975;envelope;1.05624194579094e-35!GO:0008104;protein localization;1.34632592686103e-35!GO:0009058;biosynthetic process;3.2010905479706e-35!GO:0044429;mitochondrial part;3.59192453438047e-35!GO:0006397;mRNA processing;9.49329028529078e-35!GO:0005829;cytosol;2.50639094445576e-34!GO:0006996;organelle organization and biogenesis;1.13313910304526e-33!GO:0046907;intracellular transport;6.50287460247207e-33!GO:0065003;macromolecular complex assembly;1.05605884558716e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.17675331347009e-32!GO:0003676;nucleic acid binding;6.990461699625e-32!GO:0000166;nucleotide binding;3.64997548418637e-30!GO:0005654;nucleoplasm;8.82090333090588e-30!GO:0022607;cellular component assembly;1.72111073948081e-28!GO:0007049;cell cycle;2.6305970568834e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.91548969477179e-27!GO:0005681;spliceosome;1.22145760349886e-26!GO:0006886;intracellular protein transport;1.11167262113311e-25!GO:0044451;nucleoplasm part;4.27495309679176e-25!GO:0016462;pyrophosphatase activity;9.13703343465639e-25!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.17250942798088e-24!GO:0016070;RNA metabolic process;1.28075221568187e-24!GO:0017111;nucleoside-triphosphatase activity;1.28075221568187e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;1.79400345500329e-24!GO:0051649;establishment of cellular localization;5.9532691855895e-23!GO:0019866;organelle inner membrane;2.04862939109914e-22!GO:0051641;cellular localization;2.44716400296026e-22!GO:0032553;ribonucleotide binding;6.93169466070442e-22!GO:0032555;purine ribonucleotide binding;6.93169466070442e-22!GO:0005740;mitochondrial envelope;7.41309257871914e-22!GO:0044445;cytosolic part;1.14963430196145e-21!GO:0005730;nucleolus;1.14963430196145e-21!GO:0017076;purine nucleotide binding;2.09312482565703e-21!GO:0006974;response to DNA damage stimulus;1.05522549615196e-20!GO:0031966;mitochondrial membrane;1.32977516591043e-20!GO:0005743;mitochondrial inner membrane;1.50946781215849e-20!GO:0008134;transcription factor binding;1.67717802578169e-20!GO:0022402;cell cycle process;3.29325152664886e-20!GO:0015934;large ribosomal subunit;8.17669587927437e-20!GO:0006457;protein folding;1.38919314809978e-19!GO:0005524;ATP binding;3.37848690160887e-19!GO:0022618;protein-RNA complex assembly;6.950405645061e-19!GO:0032559;adenyl ribonucleotide binding;7.13459738349617e-19!GO:0015935;small ribosomal subunit;7.5369695650348e-19!GO:0012505;endomembrane system;8.10092166218089e-19!GO:0006512;ubiquitin cycle;1.2015255229698e-18!GO:0030554;adenyl nucleotide binding;3.342821350885e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;3.89928467500376e-18!GO:0006119;oxidative phosphorylation;6.20993680263517e-18!GO:0044265;cellular macromolecule catabolic process;6.20993680263517e-18!GO:0006281;DNA repair;6.21200170783998e-18!GO:0043285;biopolymer catabolic process;6.6858753621597e-18!GO:0019941;modification-dependent protein catabolic process;7.26590105314339e-18!GO:0043632;modification-dependent macromolecule catabolic process;7.26590105314339e-18!GO:0044257;cellular protein catabolic process;1.12293904210746e-17!GO:0016874;ligase activity;1.38650358336216e-17!GO:0006511;ubiquitin-dependent protein catabolic process;1.61492830842345e-17!GO:0006260;DNA replication;1.12069173096727e-16!GO:0000278;mitotic cell cycle;1.60074070559133e-16!GO:0043412;biopolymer modification;1.88090169238792e-16!GO:0005694;chromosome;3.29980713630099e-16!GO:0031980;mitochondrial lumen;5.09428172569459e-16!GO:0005759;mitochondrial matrix;5.09428172569459e-16!GO:0044455;mitochondrial membrane part;9.74803259615195e-16!GO:0006366;transcription from RNA polymerase II promoter;1.02598720800753e-15!GO:0016887;ATPase activity;1.12387631915976e-15!GO:0009057;macromolecule catabolic process;1.13265507618088e-15!GO:0030163;protein catabolic process;1.5713126155712e-15!GO:0051276;chromosome organization and biogenesis;1.70304519325328e-15!GO:0008135;translation factor activity, nucleic acid binding;1.92081851398056e-15!GO:0048770;pigment granule;2.14767761083883e-15!GO:0042470;melanosome;2.14767761083883e-15!GO:0042623;ATPase activity, coupled;5.13589250728199e-15!GO:0051082;unfolded protein binding;5.6520974001877e-15!GO:0005635;nuclear envelope;6.93450597427775e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.59889319014145e-14!GO:0044453;nuclear membrane part;2.76901486146671e-14!GO:0031965;nuclear membrane;3.31326042722324e-14!GO:0006464;protein modification process;3.68070408772842e-14!GO:0042254;ribosome biogenesis and assembly;3.82213218414277e-14!GO:0016604;nuclear body;4.46929669361168e-14!GO:0006605;protein targeting;4.84277181596228e-14!GO:0000502;proteasome complex (sensu Eukaryota);5.21353134448726e-14!GO:0003712;transcription cofactor activity;5.37782786832026e-14!GO:0051301;cell division;7.17760253668519e-14!GO:0009719;response to endogenous stimulus;8.7233477847536e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;9.96911362883043e-14!GO:0000375;RNA splicing, via transesterification reactions;9.96911362883043e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.96911362883043e-14!GO:0005746;mitochondrial respiratory chain;1.36086666172162e-13!GO:0044427;chromosomal part;1.48541826239795e-13!GO:0048193;Golgi vesicle transport;2.87912495011913e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.76889936482972e-13!GO:0005761;mitochondrial ribosome;4.70635738707704e-13!GO:0000313;organellar ribosome;4.70635738707704e-13!GO:0005794;Golgi apparatus;4.70635738707704e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.66604103114406e-13!GO:0006913;nucleocytoplasmic transport;7.51710363852846e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;8.33997048443903e-13!GO:0005643;nuclear pore;9.65540879854641e-13!GO:0051169;nuclear transport;1.45935749169457e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.64974823322994e-12!GO:0003954;NADH dehydrogenase activity;1.64974823322994e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.64974823322994e-12!GO:0043687;post-translational protein modification;1.87699411513915e-12!GO:0000087;M phase of mitotic cell cycle;2.13851057140653e-12!GO:0004386;helicase activity;2.72642590638994e-12!GO:0022403;cell cycle phase;3.26034967430245e-12!GO:0007067;mitosis;5.03888084485578e-12!GO:0006323;DNA packaging;5.21303849398011e-12!GO:0051726;regulation of cell cycle;5.84104624135431e-12!GO:0008026;ATP-dependent helicase activity;6.68622564999859e-12!GO:0016192;vesicle-mediated transport;9.9385346030532e-12!GO:0000074;regulation of progression through cell cycle;1.47641879546585e-11!GO:0003743;translation initiation factor activity;1.48674358373509e-11!GO:0044248;cellular catabolic process;1.50292558308536e-11!GO:0051186;cofactor metabolic process;1.77523988677322e-11!GO:0006403;RNA localization;2.23182864506899e-11!GO:0005783;endoplasmic reticulum;2.39163355518615e-11!GO:0050657;nucleic acid transport;3.35123232771389e-11!GO:0051236;establishment of RNA localization;3.35123232771389e-11!GO:0050658;RNA transport;3.35123232771389e-11!GO:0006399;tRNA metabolic process;4.49560048859135e-11!GO:0006413;translational initiation;4.9668316382295e-11!GO:0044432;endoplasmic reticulum part;7.99388688174252e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.12654294220296e-10!GO:0042773;ATP synthesis coupled electron transport;1.12654294220296e-10!GO:0012501;programmed cell death;1.2651090910998e-10!GO:0046930;pore complex;1.34893317362389e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.40309013247092e-10!GO:0045271;respiratory chain complex I;1.40309013247092e-10!GO:0005747;mitochondrial respiratory chain complex I;1.40309013247092e-10!GO:0016607;nuclear speck;1.50364128572938e-10!GO:0006915;apoptosis;2.25527660714303e-10!GO:0006446;regulation of translational initiation;2.84079832670296e-10!GO:0050794;regulation of cellular process;2.88130606611643e-10!GO:0000279;M phase;3.13773651909909e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.10483872929825e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.65676414732472e-10!GO:0004812;aminoacyl-tRNA ligase activity;5.65676414732472e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.65676414732472e-10!GO:0008639;small protein conjugating enzyme activity;5.84184073890016e-10!GO:0008219;cell death;8.66053801925959e-10!GO:0016265;death;8.66053801925959e-10!GO:0015630;microtubule cytoskeleton;8.70510778545949e-10!GO:0043038;amino acid activation;9.11105323618228e-10!GO:0006418;tRNA aminoacylation for protein translation;9.11105323618228e-10!GO:0043039;tRNA aminoacylation;9.11105323618228e-10!GO:0005793;ER-Golgi intermediate compartment;9.2287130148625e-10!GO:0004842;ubiquitin-protein ligase activity;1.04695217164188e-09!GO:0006364;rRNA processing;1.2266400219968e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.27101999364228e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.42422354612212e-09!GO:0048523;negative regulation of cellular process;1.74827729847678e-09!GO:0051028;mRNA transport;2.22096799077671e-09!GO:0006461;protein complex assembly;2.36993473204957e-09!GO:0065002;intracellular protein transport across a membrane;4.15856546605622e-09!GO:0016072;rRNA metabolic process;4.37277737999454e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.07861073304501e-09!GO:0006333;chromatin assembly or disassembly;5.27585853671448e-09!GO:0000785;chromatin;5.90322170637844e-09!GO:0017038;protein import;6.98025967628468e-09!GO:0019787;small conjugating protein ligase activity;7.20090528476894e-09!GO:0005813;centrosome;8.96146776595315e-09!GO:0005768;endosome;9.24649958855507e-09!GO:0016568;chromatin modification;9.24649958855507e-09!GO:0065004;protein-DNA complex assembly;9.29025930502013e-09!GO:0006732;coenzyme metabolic process;1.22418946207936e-08!GO:0006261;DNA-dependent DNA replication;1.22418946207936e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.3491866515558e-08!GO:0016740;transferase activity;1.3491866515558e-08!GO:0005815;microtubule organizing center;1.44902068804129e-08!GO:0016881;acid-amino acid ligase activity;1.74078614510683e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.83398634275308e-08!GO:0016564;transcription repressor activity;3.37247245709845e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.37543354890696e-08!GO:0048519;negative regulation of biological process;3.64164441152506e-08!GO:0009259;ribonucleotide metabolic process;3.81774664217062e-08!GO:0000245;spliceosome assembly;5.3742784400116e-08!GO:0016563;transcription activator activity;5.50791268715011e-08!GO:0051246;regulation of protein metabolic process;6.06882547906044e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.70905687536856e-08!GO:0006163;purine nucleotide metabolic process;6.82706575915398e-08!GO:0008565;protein transporter activity;7.02996352014489e-08!GO:0043566;structure-specific DNA binding;7.07045770600644e-08!GO:0006164;purine nucleotide biosynthetic process;1.05848417792857e-07!GO:0009260;ribonucleotide biosynthetic process;1.1028895445607e-07!GO:0005667;transcription factor complex;1.15942449030311e-07!GO:0003714;transcription corepressor activity;1.18367395031454e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.33300433025123e-07!GO:0005789;endoplasmic reticulum membrane;2.11823052926577e-07!GO:0016779;nucleotidyltransferase activity;2.13402819785346e-07!GO:0009150;purine ribonucleotide metabolic process;2.47595685416912e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.58151715075192e-07!GO:0050789;regulation of biological process;2.82399152365529e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.35958761768604e-07!GO:0003924;GTPase activity;3.40551404704676e-07!GO:0031324;negative regulation of cellular metabolic process;3.47801989623941e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.73738298267508e-07!GO:0003724;RNA helicase activity;3.84015241572687e-07!GO:0032446;protein modification by small protein conjugation;4.78912558118717e-07!GO:0009055;electron carrier activity;5.41038609490026e-07!GO:0006888;ER to Golgi vesicle-mediated transport;5.86023177632159e-07!GO:0016567;protein ubiquitination;6.34837772303671e-07!GO:0051170;nuclear import;6.90345614149783e-07!GO:0015986;ATP synthesis coupled proton transport;7.13457425527994e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.13457425527994e-07!GO:0019829;cation-transporting ATPase activity;7.76323319630471e-07!GO:0007005;mitochondrion organization and biogenesis;1.16040679176688e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.25891893996112e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.25891893996112e-06!GO:0043623;cellular protein complex assembly;1.27146463298946e-06!GO:0019222;regulation of metabolic process;1.2932600918884e-06!GO:0003713;transcription coactivator activity;1.33409089967659e-06!GO:0006606;protein import into nucleus;1.42286732084859e-06!GO:0051188;cofactor biosynthetic process;1.47342419957446e-06!GO:0044431;Golgi apparatus part;1.50540327865298e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.55531624620976e-06!GO:0006793;phosphorus metabolic process;1.56807937694832e-06!GO:0006796;phosphate metabolic process;1.56807937694832e-06!GO:0043067;regulation of programmed cell death;1.57472129971015e-06!GO:0009892;negative regulation of metabolic process;1.58904829594006e-06!GO:0042981;regulation of apoptosis;1.82460631626162e-06!GO:0003697;single-stranded DNA binding;1.82946813199317e-06!GO:0009141;nucleoside triphosphate metabolic process;1.94710833940076e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.96967274798517e-06!GO:0005819;spindle;2.2053846704845e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.40543099212468e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.40543099212468e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.50100218080671e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.8987049231715e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.8987049231715e-06!GO:0009060;aerobic respiration;3.1280755911589e-06!GO:0016481;negative regulation of transcription;3.23231085237148e-06!GO:0009056;catabolic process;4.64091086652337e-06!GO:0044440;endosomal part;5.03298956830812e-06!GO:0010008;endosome membrane;5.03298956830812e-06!GO:0006754;ATP biosynthetic process;5.59776696623257e-06!GO:0006753;nucleoside phosphate metabolic process;5.59776696623257e-06!GO:0003899;DNA-directed RNA polymerase activity;5.9302356112124e-06!GO:0000151;ubiquitin ligase complex;7.10709067301471e-06!GO:0045259;proton-transporting ATP synthase complex;7.33250645707999e-06!GO:0043069;negative regulation of programmed cell death;7.33250645707999e-06!GO:0006334;nucleosome assembly;7.45533428855746e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.46538680189339e-06!GO:0016787;hydrolase activity;7.57272754769943e-06!GO:0046034;ATP metabolic process;8.88852642027962e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.01205863750408e-05!GO:0031497;chromatin assembly;1.19146719819122e-05!GO:0045786;negative regulation of progression through cell cycle;1.28655284029378e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.35055695842732e-05!GO:0005788;endoplasmic reticulum lumen;1.67581034913205e-05!GO:0008186;RNA-dependent ATPase activity;1.70878056000756e-05!GO:0043066;negative regulation of apoptosis;1.84724753653838e-05!GO:0006916;anti-apoptosis;1.92743966374075e-05!GO:0016310;phosphorylation;2.3427132478753e-05!GO:0005762;mitochondrial large ribosomal subunit;2.37063597909308e-05!GO:0000315;organellar large ribosomal subunit;2.37063597909308e-05!GO:0030120;vesicle coat;2.37063597909308e-05!GO:0030662;coated vesicle membrane;2.37063597909308e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.42656817979719e-05!GO:0051427;hormone receptor binding;2.55106102889162e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.68144171206555e-05!GO:0005525;GTP binding;2.68250278621493e-05!GO:0000139;Golgi membrane;2.999360883756e-05!GO:0005769;early endosome;3.24713823693703e-05!GO:0003682;chromatin binding;3.7707403065438e-05!GO:0031988;membrane-bound vesicle;3.7707403065438e-05!GO:0016023;cytoplasmic membrane-bound vesicle;4.16586642067431e-05!GO:0009108;coenzyme biosynthetic process;4.44173478094242e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.67286875191205e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.96028301770929e-05!GO:0051329;interphase of mitotic cell cycle;5.05416353445592e-05!GO:0045333;cellular respiration;5.27493059555778e-05!GO:0019899;enzyme binding;5.30231495760926e-05!GO:0003690;double-stranded DNA binding;5.33454359277279e-05!GO:0051052;regulation of DNA metabolic process;5.39716581922183e-05!GO:0004004;ATP-dependent RNA helicase activity;5.4961271305666e-05!GO:0035257;nuclear hormone receptor binding;5.64686753516572e-05!GO:0006752;group transfer coenzyme metabolic process;6.00094204457909e-05!GO:0051168;nuclear export;6.30963137256119e-05!GO:0005657;replication fork;6.4432806945041e-05!GO:0045941;positive regulation of transcription;7.4279265727131e-05!GO:0000075;cell cycle checkpoint;8.23157453202231e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.56584695204552e-05!GO:0043021;ribonucleoprotein binding;8.66461043236785e-05!GO:0048522;positive regulation of cellular process;8.72724407795916e-05!GO:0005770;late endosome;8.77879266706902e-05!GO:0051325;interphase;8.99214534118469e-05!GO:0000314;organellar small ribosomal subunit;9.47839443818606e-05!GO:0005763;mitochondrial small ribosomal subunit;9.47839443818606e-05!GO:0006613;cotranslational protein targeting to membrane;9.50764526132525e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00011247283350586!GO:0048471;perinuclear region of cytoplasm;0.000118245344039646!GO:0006099;tricarboxylic acid cycle;0.000120990747871791!GO:0046356;acetyl-CoA catabolic process;0.000120990747871791!GO:0006402;mRNA catabolic process;0.000122707837952143!GO:0009117;nucleotide metabolic process;0.00013261675174039!GO:0000775;chromosome, pericentric region;0.000138773931245614!GO:0004298;threonine endopeptidase activity;0.000140031887572973!GO:0045893;positive regulation of transcription, DNA-dependent;0.000141816198632508!GO:0031982;vesicle;0.000142156883674922!GO:0016853;isomerase activity;0.000154396467126678!GO:0006383;transcription from RNA polymerase III promoter;0.000172809516179435!GO:0031410;cytoplasmic vesicle;0.000187861998280468!GO:0031323;regulation of cellular metabolic process;0.000188077716571727!GO:0005048;signal sequence binding;0.000193570418525167!GO:0031252;leading edge;0.000193570418525167!GO:0044452;nucleolar part;0.000193570418525167!GO:0004674;protein serine/threonine kinase activity;0.000194141993876514!GO:0006350;transcription;0.000213191583278149!GO:0008094;DNA-dependent ATPase activity;0.00021464283324662!GO:0048475;coated membrane;0.000215564384463258!GO:0030117;membrane coat;0.000215564384463258!GO:0045045;secretory pathway;0.000215564384463258!GO:0007243;protein kinase cascade;0.000237615308692371!GO:0007051;spindle organization and biogenesis;0.000243772940772954!GO:0031072;heat shock protein binding;0.000294126936065038!GO:0003729;mRNA binding;0.000305315221098488!GO:0051187;cofactor catabolic process;0.000315782884364733!GO:0009109;coenzyme catabolic process;0.000331958293750403!GO:0006084;acetyl-CoA metabolic process;0.000336195037884232!GO:0032561;guanyl ribonucleotide binding;0.000358329868490253!GO:0019001;guanyl nucleotide binding;0.000358329868490253!GO:0008654;phospholipid biosynthetic process;0.000370455117156663!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000452490925861835!GO:0008361;regulation of cell size;0.000492460658076249!GO:0007264;small GTPase mediated signal transduction;0.000501738325794766!GO:0065007;biological regulation;0.000508879504610629!GO:0006302;double-strand break repair;0.000543907003530655!GO:0005773;vacuole;0.000547263693757535!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000578750708011787!GO:0045454;cell redox homeostasis;0.000599287939862484!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000613279496714968!GO:0016859;cis-trans isomerase activity;0.000662620044348526!GO:0032508;DNA duplex unwinding;0.000665459513605154!GO:0032392;DNA geometric change;0.000665459513605154!GO:0005874;microtubule;0.000667503029607147!GO:0005885;Arp2/3 protein complex;0.00070049446857451!GO:0001558;regulation of cell growth;0.000704000753667626!GO:0003684;damaged DNA binding;0.000711179801187746!GO:0015631;tubulin binding;0.000859971902564942!GO:0000049;tRNA binding;0.00088156240332771!GO:0006401;RNA catabolic process;0.00088156240332771!GO:0016049;cell growth;0.000923551518530139!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000932834104680383!GO:0015399;primary active transmembrane transporter activity;0.000932834104680383!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000932834104680383!GO:0030880;RNA polymerase complex;0.000944927610565757!GO:0004576;oligosaccharyl transferase activity;0.00108220095369082!GO:0008139;nuclear localization sequence binding;0.00108833531561098!GO:0007010;cytoskeleton organization and biogenesis;0.00115584753671369!GO:0008250;oligosaccharyl transferase complex;0.00124462644079596!GO:0051789;response to protein stimulus;0.00130035366169917!GO:0006986;response to unfolded protein;0.00130035366169917!GO:0051252;regulation of RNA metabolic process;0.00130145917405049!GO:0042802;identical protein binding;0.00132178801354283!GO:0000059;protein import into nucleus, docking;0.00133535591253619!GO:0006284;base-excision repair;0.00133542971843821!GO:0045892;negative regulation of transcription, DNA-dependent;0.00134319042545265!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00135532688704228!GO:0005798;Golgi-associated vesicle;0.00136100977741039!GO:0000776;kinetochore;0.00138563830830946!GO:0006352;transcription initiation;0.00140142624862908!GO:0003702;RNA polymerase II transcription factor activity;0.00141682415410552!GO:0030867;rough endoplasmic reticulum membrane;0.00149316003615847!GO:0010468;regulation of gene expression;0.00163963250016488!GO:0006268;DNA unwinding during replication;0.00164064058803405!GO:0048487;beta-tubulin binding;0.00171087938751893!GO:0006275;regulation of DNA replication;0.0017145579575073!GO:0008022;protein C-terminus binding;0.00179549968718047!GO:0030036;actin cytoskeleton organization and biogenesis;0.00184111770164414!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00189109593333208!GO:0016363;nuclear matrix;0.00195702741952265!GO:0033116;ER-Golgi intermediate compartment membrane;0.00200003112878695!GO:0006310;DNA recombination;0.00204622121851003!GO:0065009;regulation of a molecular function;0.00206736111851536!GO:0006414;translational elongation;0.00211787607146456!GO:0015980;energy derivation by oxidation of organic compounds;0.00215729167108804!GO:0051101;regulation of DNA binding;0.00218859905471351!GO:0016197;endosome transport;0.00220756438851813!GO:0003678;DNA helicase activity;0.00222984946999398!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00226122463970195!GO:0008033;tRNA processing;0.00226734513424996!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00227981938021743!GO:0000428;DNA-directed RNA polymerase complex;0.00227981938021743!GO:0016741;transferase activity, transferring one-carbon groups;0.00227981938021743!GO:0000323;lytic vacuole;0.0024185104138286!GO:0005764;lysosome;0.0024185104138286!GO:0016272;prefoldin complex;0.00245752665279051!GO:0006892;post-Golgi vesicle-mediated transport;0.00256472681144975!GO:0003711;transcription elongation regulator activity;0.0026781229594093!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00285941465893533!GO:0051087;chaperone binding;0.00290666061687622!GO:0043492;ATPase activity, coupled to movement of substances;0.0031201185571394!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00312370082284925!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00320290308442707!GO:0006405;RNA export from nucleus;0.00322042192526403!GO:0008168;methyltransferase activity;0.00335303076161612!GO:0019783;small conjugating protein-specific protease activity;0.00349725677682965!GO:0019843;rRNA binding;0.00350725698856518!GO:0030132;clathrin coat of coated pit;0.00356841120516141!GO:0043681;protein import into mitochondrion;0.00371587800016761!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0037556192438229!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0037556192438229!GO:0035258;steroid hormone receptor binding;0.00375603547675234!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0038607121947761!GO:0006338;chromatin remodeling;0.00397890458073203!GO:0006839;mitochondrial transport;0.00416079472977675!GO:0009893;positive regulation of metabolic process;0.00424386997544972!GO:0018196;peptidyl-asparagine modification;0.00427253085817552!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00427253085817552!GO:0019867;outer membrane;0.00443906867820112!GO:0046467;membrane lipid biosynthetic process;0.00450518624491052!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00468033614126423!GO:0043488;regulation of mRNA stability;0.00468543472451501!GO:0043487;regulation of RNA stability;0.00468543472451501!GO:0040029;regulation of gene expression, epigenetic;0.00471329150319986!GO:0043284;biopolymer biosynthetic process;0.00482035271100478!GO:0048518;positive regulation of biological process;0.00488621592820942!GO:0000922;spindle pole;0.00492297461827736!GO:0005684;U2-dependent spliceosome;0.00495193316544489!GO:0046983;protein dimerization activity;0.00495205537823359!GO:0009165;nucleotide biosynthetic process;0.00513144795947868!GO:0004843;ubiquitin-specific protease activity;0.00528164026564072!GO:0008629;induction of apoptosis by intracellular signals;0.00538484272820128!GO:0000786;nucleosome;0.00540771969272353!GO:0040008;regulation of growth;0.00566483469875839!GO:0003746;translation elongation factor activity;0.00577776496755149!GO:0016301;kinase activity;0.00577776496755149!GO:0006607;NLS-bearing substrate import into nucleus;0.00587301342206606!GO:0006818;hydrogen transport;0.00589143592182355!GO:0006289;nucleotide-excision repair;0.0059539728627414!GO:0048500;signal recognition particle;0.00597373555452933!GO:0006611;protein export from nucleus;0.00598758534214445!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00608254036992295!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00608254036992295!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00608254036992295!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00608254036992295!GO:0031968;organelle outer membrane;0.00617959957766562!GO:0016251;general RNA polymerase II transcription factor activity;0.00618221974517567!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00656527880318016!GO:0004527;exonuclease activity;0.00671711641410869!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.006903901406809!GO:0033673;negative regulation of kinase activity;0.006903901406809!GO:0006469;negative regulation of protein kinase activity;0.006903901406809!GO:0032774;RNA biosynthetic process;0.00696700895547666!GO:0015992;proton transport;0.00720871973801849!GO:0006612;protein targeting to membrane;0.00725929747343322!GO:0008234;cysteine-type peptidase activity;0.00732950299164136!GO:0006626;protein targeting to mitochondrion;0.00748257585190254!GO:0030134;ER to Golgi transport vesicle;0.00766804813928583!GO:0022415;viral reproductive process;0.00769997881907466!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00771610870697483!GO:0015002;heme-copper terminal oxidase activity;0.00771610870697483!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00771610870697483!GO:0004129;cytochrome-c oxidase activity;0.00771610870697483!GO:0006351;transcription, DNA-dependent;0.00786173519977738!GO:0051098;regulation of binding;0.00787791857399446!GO:0007052;mitotic spindle organization and biogenesis;0.00796694734565838!GO:0005637;nuclear inner membrane;0.00809638825917912!GO:0017166;vinculin binding;0.00845684471346255!GO:0006091;generation of precursor metabolites and energy;0.00861354757021977!GO:0046474;glycerophospholipid biosynthetic process;0.00888780499622462!GO:0006376;mRNA splice site selection;0.00938480106273108!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00938480106273108!GO:0007030;Golgi organization and biogenesis;0.00946043275701249!GO:0030029;actin filament-based process;0.00946043275701249!GO:0022890;inorganic cation transmembrane transporter activity;0.0100237586320257!GO:0042770;DNA damage response, signal transduction;0.0100583597616517!GO:0005905;coated pit;0.0100951117463341!GO:0006417;regulation of translation;0.0101142980444403!GO:0031901;early endosome membrane;0.0101608497092379!GO:0006891;intra-Golgi vesicle-mediated transport;0.0103866991728925!GO:0030176;integral to endoplasmic reticulum membrane;0.0107990538160306!GO:0004221;ubiquitin thiolesterase activity;0.0110519506608946!GO:0044450;microtubule organizing center part;0.0111840263044853!GO:0030521;androgen receptor signaling pathway;0.0114176586731861!GO:0007017;microtubule-based process;0.0115858931958373!GO:0008312;7S RNA binding;0.0116459569166781!GO:0048468;cell development;0.0117123925113063!GO:0007088;regulation of mitosis;0.0117123925113063!GO:0016044;membrane organization and biogenesis;0.0117244050305312!GO:0006270;DNA replication initiation;0.0120173283118433!GO:0031124;mRNA 3'-end processing;0.0120916088579386!GO:0031625;ubiquitin protein ligase binding;0.0121501537939328!GO:0008287;protein serine/threonine phosphatase complex;0.0121642851752508!GO:0032940;secretion by cell;0.0121764289303666!GO:0016790;thiolester hydrolase activity;0.0131029798173938!GO:0043022;ribosome binding;0.0132875849537334!GO:0005741;mitochondrial outer membrane;0.0135606131279036!GO:0008017;microtubule binding;0.0135891397072238!GO:0019206;nucleoside kinase activity;0.0137271708675203!GO:0031902;late endosome membrane;0.0137271708675203!GO:0000082;G1/S transition of mitotic cell cycle;0.0141785051673011!GO:0046822;regulation of nucleocytoplasmic transport;0.0142717177992536!GO:0006672;ceramide metabolic process;0.0142833059219319!GO:0006984;ER-nuclear signaling pathway;0.0145517356301001!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0152592124237615!GO:0051348;negative regulation of transferase activity;0.0154571678863738!GO:0031325;positive regulation of cellular metabolic process;0.0155281044378836!GO:0004177;aminopeptidase activity;0.0156879846793808!GO:0003725;double-stranded RNA binding;0.0156879846793808!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0156958458259038!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0158892313642909!GO:0043549;regulation of kinase activity;0.0159701693168716!GO:0004532;exoribonuclease activity;0.0162279477365926!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0162279477365926!GO:0030027;lamellipodium;0.0163366680521606!GO:0007093;mitotic cell cycle checkpoint;0.0165011959368722!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0167663450681821!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0167663450681821!GO:0006950;response to stress;0.0169100663684243!GO:0032200;telomere organization and biogenesis;0.0171957944210018!GO:0000723;telomere maintenance;0.0171957944210018!GO:0005832;chaperonin-containing T-complex;0.0172608560604927!GO:0030133;transport vesicle;0.0172608560604927!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0174765613696693!GO:0030127;COPII vesicle coat;0.0174765613696693!GO:0012507;ER to Golgi transport vesicle membrane;0.0174765613696693!GO:0030658;transport vesicle membrane;0.0175116245517812!GO:0051338;regulation of transferase activity;0.0175922685645028!GO:0008092;cytoskeletal protein binding;0.0175922685645028!GO:0000792;heterochromatin;0.0180293266589018!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0180293266589018!GO:0045047;protein targeting to ER;0.0180293266589018!GO:0043414;biopolymer methylation;0.0181529547259952!GO:0046966;thyroid hormone receptor binding;0.0181529547259952!GO:0006595;polyamine metabolic process;0.0181755605880166!GO:0046519;sphingoid metabolic process;0.0183701015687338!GO:0051053;negative regulation of DNA metabolic process;0.0184091278445202!GO:0007006;mitochondrial membrane organization and biogenesis;0.0187582478128619!GO:0050178;phenylpyruvate tautomerase activity;0.0189031124174412!GO:0016791;phosphoric monoester hydrolase activity;0.0189880250046598!GO:0050681;androgen receptor binding;0.0195244074279214!GO:0000910;cytokinesis;0.0197209387034968!GO:0009116;nucleoside metabolic process;0.0201255277430617!GO:0006144;purine base metabolic process;0.0202302651305573!GO:0046483;heterocycle metabolic process;0.0202917848896275!GO:0031326;regulation of cellular biosynthetic process;0.0206148008512224!GO:0046489;phosphoinositide biosynthetic process;0.0207588843228969!GO:0005862;muscle thin filament tropomyosin;0.0208373588374652!GO:0032259;methylation;0.0209782858202752!GO:0007059;chromosome segregation;0.0212670484212493!GO:0008047;enzyme activator activity;0.0215068008715853!GO:0005669;transcription factor TFIID complex;0.0217026912908436!GO:0016311;dephosphorylation;0.0217259078014293!GO:0008632;apoptotic program;0.0217827879895719!GO:0000287;magnesium ion binding;0.0226345523037248!GO:0009889;regulation of biosynthetic process;0.0230380876384028!GO:0031570;DNA integrity checkpoint;0.0231044079636127!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0244858532797092!GO:0005732;small nucleolar ribonucleoprotein complex;0.0247728052055091!GO:0035035;histone acetyltransferase binding;0.025074013804241!GO:0009112;nucleobase metabolic process;0.0257140181926152!GO:0000339;RNA cap binding;0.0257140181926152!GO:0031123;RNA 3'-end processing;0.0262866101590165!GO:0030660;Golgi-associated vesicle membrane;0.0269956263400986!GO:0030518;steroid hormone receptor signaling pathway;0.0269964370277493!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0270089883740687!GO:0045449;regulation of transcription;0.0275662997299486!GO:0043624;cellular protein complex disassembly;0.0277584644453444!GO:0008286;insulin receptor signaling pathway;0.0280378267018804!GO:0004722;protein serine/threonine phosphatase activity;0.0280646198741531!GO:0051287;NAD binding;0.0285151823306247!GO:0007040;lysosome organization and biogenesis;0.0285151823306247!GO:0016584;nucleosome positioning;0.0286142618346856!GO:0005791;rough endoplasmic reticulum;0.0300551602864025!GO:0007265;Ras protein signal transduction;0.0306697330059182!GO:0030503;regulation of cell redox homeostasis;0.0308556502891628!GO:0004518;nuclease activity;0.0310927331598539!GO:0005876;spindle microtubule;0.0313210339160335!GO:0008538;proteasome activator activity;0.03157625608419!GO:0045859;regulation of protein kinase activity;0.0318429040750403!GO:0006730;one-carbon compound metabolic process;0.0321204871604371!GO:0000725;recombinational repair;0.0325215083235042!GO:0000724;double-strand break repair via homologous recombination;0.0325215083235042!GO:0032906;transforming growth factor-beta2 production;0.0333639862701576!GO:0032909;regulation of transforming growth factor-beta2 production;0.0333639862701576!GO:0007346;regulation of progression through mitotic cell cycle;0.0337674287064542!GO:0006354;RNA elongation;0.033788805814597!GO:0030118;clathrin coat;0.0345924111018509!GO:0050790;regulation of catalytic activity;0.0352300181545372!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0364627850314476!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0364627850314476!GO:0030911;TPR domain binding;0.036828174612339!GO:0006740;NADPH regeneration;0.0370048088696727!GO:0006098;pentose-phosphate shunt;0.0370048088696727!GO:0050811;GABA receptor binding;0.0376160574874879!GO:0006301;postreplication repair;0.0376160574874879!GO:0000781;chromosome, telomeric region;0.0378943541499321!GO:0007242;intracellular signaling cascade;0.0384086673515709!GO:0006360;transcription from RNA polymerase I promoter;0.0385615824443216!GO:0005096;GTPase activator activity;0.0385762095465921!GO:0008637;apoptotic mitochondrial changes;0.038863401085712!GO:0030663;COPI coated vesicle membrane;0.0389700562843759!GO:0030126;COPI vesicle coat;0.0389700562843759!GO:0007021;tubulin folding;0.0395846870407309!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0401091043977853!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0401293080251451!GO:0006458;'de novo' protein folding;0.0404524123992527!GO:0051084;'de novo' posttranslational protein folding;0.0404524123992527!GO:0050662;coenzyme binding;0.0406939747574957!GO:0006541;glutamine metabolic process;0.0413932924397665!GO:0007004;telomere maintenance via telomerase;0.0418045143693535!GO:0006778;porphyrin metabolic process;0.0431499307905782!GO:0033013;tetrapyrrole metabolic process;0.0431499307905782!GO:0032984;macromolecular complex disassembly;0.0432608823649359!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0433129890641056!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0436027925138401!GO:0031529;ruffle organization and biogenesis;0.0436446279344882!GO:0000178;exosome (RNase complex);0.0436568350823169!GO:0006497;protein amino acid lipidation;0.0440954448551272!GO:0042769;DNA damage response, detection of DNA damage;0.0443136205822214!GO:0045603;positive regulation of endothelial cell differentiation;0.0443263804683653!GO:0004721;phosphoprotein phosphatase activity;0.0446064475263492!GO:0009124;nucleoside monophosphate biosynthetic process;0.0446130385296513!GO:0009123;nucleoside monophosphate metabolic process;0.0446130385296513!GO:0000123;histone acetyltransferase complex;0.0447571115226956!GO:0004239;methionyl aminopeptidase activity;0.0448514521359752!GO:0016585;chromatin remodeling complex;0.0452241767968976!GO:0043189;H4/H2A histone acetyltransferase complex;0.0453409545541571!GO:0046112;nucleobase biosynthetic process;0.0457091149313107!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.046159736751813!GO:0009967;positive regulation of signal transduction;0.046159736751813!GO:0008156;negative regulation of DNA replication;0.0465254285851922!GO:0019904;protein domain specific binding;0.0466571150572215!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0473218113129457!GO:0009303;rRNA transcription;0.0476380763844245!GO:0022406;membrane docking;0.0483015511808036!GO:0048278;vesicle docking;0.0483015511808036!GO:0031057;negative regulation of histone modification;0.0484025815300738!GO:0035067;negative regulation of histone acetylation;0.0484025815300738!GO:0004680;casein kinase activity;0.0485634048994923!GO:0005869;dynactin complex;0.0486418533445608!GO:0030433;ER-associated protein catabolic process;0.0491454702242926!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0491454702242926!GO:0045792;negative regulation of cell size;0.0493808039025211!GO:0008408;3'-5' exonuclease activity;0.0495263180359292 | |||
|sample_id=10604 | |sample_id=10604 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=pancreas | |sample_tissue=pancreas | ||
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.39955210017;FOXQ1:1.31553889067;PAX8:1.27036665934;bHLH_family:1.13112157212;RORA:1.00654195647;HES1:0.944195025049;ONECUT1,2:0.92777929747;PPARG:0.791651367766;ADNP_IRX_SIX_ZHX:0.758573076188;POU6F1:0.716721809383;FOX{F1,F2,J1}:0.699387292829;NFIX:0.676002000231;VSX1,2:0.652470137895;LHX3,4:0.636833245533;TFDP1:0.608792703728;EGR1..3:0.596958764855;NANOG:0.593009951722;ALX1:0.590279344921;TFAP2B:0.572028469362;XCPE1{core}:0.544989533746;E2F1..5:0.536056829629;FOXD3:0.526927366536;BREu{core}:0.514466448385;FOXA2:0.499537106678;TFAP2{A,C}:0.478814274005;POU1F1:0.478409647851;SP1:0.46833088274;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.460480631174;FOS_FOS{B,L1}_JUN{B,D}:0.459713874877;AHR_ARNT_ARNT2:0.432243139084;MYB:0.426223962356;PRRX1,2:0.421310299699;ZFP161:0.414437282642;PDX1:0.413695902722;ZNF148:0.405013267689;HOX{A5,B5}:0.403207486967;NKX2-1,4:0.396976220355;STAT5{A,B}:0.375146439006;NFE2:0.355209722316;AIRE:0.340955346866;HIC1:0.328054912205;CEBPA,B_DDIT3:0.322132724134;FOX{I1,J2}:0.322127842956;BPTF:0.32080611928;HOXA9_MEIS1:0.305176329591;TEF:0.268985396379;TBX4,5:0.268410786719;RBPJ:0.265065489752;NRF1:0.25839088552;FOSL2:0.24299035504;ELK1,4_GABP{A,B1}:0.223031221383;ZBTB16:0.205224186349;NFE2L2:0.18485416958;RFX1:0.181531035588;PAX4:0.177982826738;ZNF143:0.172479704157;SOX5:0.168421498537;REST:0.161400723714;HOX{A6,A7,B6,B7}:0.149064930991;CUX2:0.148974824617;NR6A1:0.143918529719;TLX1..3_NFIC{dimer}:0.140843309047;GATA6:0.133635762164;PBX1:0.133402696209;PAX5:0.129845099208;POU5F1:0.129387548919;T:0.124667026942;PAX1,9:0.112892860341;MYOD1:0.112553545621;ATF4:0.109384365161;LEF1_TCF7_TCF7L1,2:0.108305895809;SOX17:0.104050100598;BACH2:0.0988987308992;TP53:0.090470637389;TEAD1:0.0742901829583;PATZ1:0.0683340866019;HLF:0.0456308128116;MTF1:0.0421720487031;HNF1A:0.0352445370726;ZNF423:0.0301746973688;SOX{8,9,10}:0.0212665469844;GLI1..3:0.0205610682543;FOXM1:0.000330119840703;NFKB1_REL_RELA:-0.0254333670963;HOX{A4,D4}:-0.0299844668996;GTF2A1,2:-0.0418531321984;CDX1,2,4:-0.0422171061781;MED-1{core}:-0.0491715191539;PITX1..3:-0.0509244076971;IKZF2:-0.0540217184388;SNAI1..3:-0.0659282894021;NKX2-3_NKX2-5:-0.0686793806692;NFIL3:-0.0695687151732;FOX{D1,D2}:-0.071395587458;LMO2:-0.0806606769434;ESR1:-0.0816538121828;IRF7:-0.0820005187595;NFY{A,B,C}:-0.100246706078;MEF2{A,B,C,D}:-0.103032703128;OCT4_SOX2{dimer}:-0.105239106318;PAX2:-0.106131256627;HNF4A_NR2F1,2:-0.128894501115;PAX3,7:-0.131386059744;MTE{core}:-0.157933684996;NR5A1,2:-0.171316749343;HAND1,2:-0.176838463869;CDC5L:-0.177062511325;ETS1,2:-0.191990847642;PRDM1:-0.217466967633;ZBTB6:-0.221725958237;GTF2I:-0.224973413021;GFI1:-0.231980854272;NKX2-2,8:-0.236081912349;RXR{A,B,G}:-0.250719177925;ZEB1:-0.263397417539;RXRA_VDR{dimer}:-0.267406692956;ZNF384:-0.269773702754;NR1H4:-0.282332186025;CRX:-0.292072545675;TFAP4:-0.292880503574;SRF:-0.293303208668;NR3C1:-0.297739881891;ATF5_CREB3:-0.30345085149;TFCP2:-0.338483126065;SPI1:-0.339930743589;NHLH1,2:-0.342167564554;PAX6:-0.35257962647;HBP1_HMGB_SSRP1_UBTF:-0.36173732919;EBF1:-0.373244434048;TAL1_TCF{3,4,12}:-0.376179759702;NFATC1..3:-0.383462743163;AR:-0.393017341911;FOXP1:-0.402540523504;FOXL1:-0.411389442716;RUNX1..3:-0.41667190968;SPIB:-0.417830964624;ELF1,2,4:-0.422283367552;HMGA1,2:-0.42397334661;STAT1,3:-0.451345732816;YY1:-0.462558343633;ATF2:-0.466553435001;HSF1,2:-0.469468720554;IKZF1:-0.471054019268;SOX2:-0.476243057603;DMAP1_NCOR{1,2}_SMARC:-0.477327633813;FOXO1,3,4:-0.481215063652;RFX2..5_RFXANK_RFXAP:-0.498117393511;MAZ:-0.50423725354;POU2F1..3:-0.507361348948;XBP1:-0.511193032442;POU3F1..4:-0.537604207949;ESRRA:-0.537936653086;UFEwm:-0.541130738489;MYBL2:-0.586080267163;RREB1:-0.596092038615;EVI1:-0.641714207539;EN1,2:-0.64421406256;STAT2,4,6:-0.652612678867;MYFfamily:-0.665900103773;IRF1,2:-0.66853225194;FOXN1:-0.672165865502;JUN:-0.677047385854;CREB1:-0.700234418402;NFE2L1:-0.702340211552;GFI1B:-0.718501813218;TOPORS:-0.721134258105;NKX3-1:-0.722297154819;GATA4:-0.738570068829;GZF1:-0.742024105709;MZF1:-0.759441819587;ALX4:-0.777827904104;KLF4:-0.795850390588;ZIC1..3:-0.808514241616;ARID5B:-0.809973827181;ZNF238:-0.816229190874;DBP:-0.896699818699;TBP:-0.973447993608;FOXP3:-0.991032817983;NKX6-1,2:-1.00371194983;SREBF1,2:-1.00759796608;HMX1:-1.01975309961;ATF6:-1.18408541729;HIF1A:-1.21042826564;NKX3-2:-1.25397448172;SMAD1..7,9:-1.28090429232;GCM1,2:-1.30983505395;TGIF1:-1.33057381497;SPZ1:-1.33915781362;MAFB:-1.37232047539;EP300:-1.47574161029;TLX2:-1.7352977263;NANOG{mouse}:-1.90031676242 | |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.39955210017;FOXQ1:1.31553889067;PAX8:1.27036665934;bHLH_family:1.13112157212;RORA:1.00654195647;HES1:0.944195025049;ONECUT1,2:0.92777929747;PPARG:0.791651367766;ADNP_IRX_SIX_ZHX:0.758573076188;POU6F1:0.716721809383;FOX{F1,F2,J1}:0.699387292829;NFIX:0.676002000231;VSX1,2:0.652470137895;LHX3,4:0.636833245533;TFDP1:0.608792703728;EGR1..3:0.596958764855;NANOG:0.593009951722;ALX1:0.590279344921;TFAP2B:0.572028469362;XCPE1{core}:0.544989533746;E2F1..5:0.536056829629;FOXD3:0.526927366536;BREu{core}:0.514466448385;FOXA2:0.499537106678;TFAP2{A,C}:0.478814274005;POU1F1:0.478409647851;SP1:0.46833088274;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.460480631174;FOS_FOS{B,L1}_JUN{B,D}:0.459713874877;AHR_ARNT_ARNT2:0.432243139084;MYB:0.426223962356;PRRX1,2:0.421310299699;ZFP161:0.414437282642;PDX1:0.413695902722;ZNF148:0.405013267689;HOX{A5,B5}:0.403207486967;NKX2-1,4:0.396976220355;STAT5{A,B}:0.375146439006;NFE2:0.355209722316;AIRE:0.340955346866;HIC1:0.328054912205;CEBPA,B_DDIT3:0.322132724134;FOX{I1,J2}:0.322127842956;BPTF:0.32080611928;HOXA9_MEIS1:0.305176329591;TEF:0.268985396379;TBX4,5:0.268410786719;RBPJ:0.265065489752;NRF1:0.25839088552;FOSL2:0.24299035504;ELK1,4_GABP{A,B1}:0.223031221383;ZBTB16:0.205224186349;NFE2L2:0.18485416958;RFX1:0.181531035588;PAX4:0.177982826738;ZNF143:0.172479704157;SOX5:0.168421498537;REST:0.161400723714;HOX{A6,A7,B6,B7}:0.149064930991;CUX2:0.148974824617;NR6A1:0.143918529719;TLX1..3_NFIC{dimer}:0.140843309047;GATA6:0.133635762164;PBX1:0.133402696209;PAX5:0.129845099208;POU5F1:0.129387548919;T:0.124667026942;PAX1,9:0.112892860341;MYOD1:0.112553545621;ATF4:0.109384365161;LEF1_TCF7_TCF7L1,2:0.108305895809;SOX17:0.104050100598;BACH2:0.0988987308992;TP53:0.090470637389;TEAD1:0.0742901829583;PATZ1:0.0683340866019;HLF:0.0456308128116;MTF1:0.0421720487031;HNF1A:0.0352445370726;ZNF423:0.0301746973688;SOX{8,9,10}:0.0212665469844;GLI1..3:0.0205610682543;FOXM1:0.000330119840703;NFKB1_REL_RELA:-0.0254333670963;HOX{A4,D4}:-0.0299844668996;GTF2A1,2:-0.0418531321984;CDX1,2,4:-0.0422171061781;MED-1{core}:-0.0491715191539;PITX1..3:-0.0509244076971;IKZF2:-0.0540217184388;SNAI1..3:-0.0659282894021;NKX2-3_NKX2-5:-0.0686793806692;NFIL3:-0.0695687151732;FOX{D1,D2}:-0.071395587458;LMO2:-0.0806606769434;ESR1:-0.0816538121828;IRF7:-0.0820005187595;NFY{A,B,C}:-0.100246706078;MEF2{A,B,C,D}:-0.103032703128;OCT4_SOX2{dimer}:-0.105239106318;PAX2:-0.106131256627;HNF4A_NR2F1,2:-0.128894501115;PAX3,7:-0.131386059744;MTE{core}:-0.157933684996;NR5A1,2:-0.171316749343;HAND1,2:-0.176838463869;CDC5L:-0.177062511325;ETS1,2:-0.191990847642;PRDM1:-0.217466967633;ZBTB6:-0.221725958237;GTF2I:-0.224973413021;GFI1:-0.231980854272;NKX2-2,8:-0.236081912349;RXR{A,B,G}:-0.250719177925;ZEB1:-0.263397417539;RXRA_VDR{dimer}:-0.267406692956;ZNF384:-0.269773702754;NR1H4:-0.282332186025;CRX:-0.292072545675;TFAP4:-0.292880503574;SRF:-0.293303208668;NR3C1:-0.297739881891;ATF5_CREB3:-0.30345085149;TFCP2:-0.338483126065;SPI1:-0.339930743589;NHLH1,2:-0.342167564554;PAX6:-0.35257962647;HBP1_HMGB_SSRP1_UBTF:-0.36173732919;EBF1:-0.373244434048;TAL1_TCF{3,4,12}:-0.376179759702;NFATC1..3:-0.383462743163;AR:-0.393017341911;FOXP1:-0.402540523504;FOXL1:-0.411389442716;RUNX1..3:-0.41667190968;SPIB:-0.417830964624;ELF1,2,4:-0.422283367552;HMGA1,2:-0.42397334661;STAT1,3:-0.451345732816;YY1:-0.462558343633;ATF2:-0.466553435001;HSF1,2:-0.469468720554;IKZF1:-0.471054019268;SOX2:-0.476243057603;DMAP1_NCOR{1,2}_SMARC:-0.477327633813;FOXO1,3,4:-0.481215063652;RFX2..5_RFXANK_RFXAP:-0.498117393511;MAZ:-0.50423725354;POU2F1..3:-0.507361348948;XBP1:-0.511193032442;POU3F1..4:-0.537604207949;ESRRA:-0.537936653086;UFEwm:-0.541130738489;MYBL2:-0.586080267163;RREB1:-0.596092038615;EVI1:-0.641714207539;EN1,2:-0.64421406256;STAT2,4,6:-0.652612678867;MYFfamily:-0.665900103773;IRF1,2:-0.66853225194;FOXN1:-0.672165865502;JUN:-0.677047385854;CREB1:-0.700234418402;NFE2L1:-0.702340211552;GFI1B:-0.718501813218;TOPORS:-0.721134258105;NKX3-1:-0.722297154819;GATA4:-0.738570068829;GZF1:-0.742024105709;MZF1:-0.759441819587;ALX4:-0.777827904104;KLF4:-0.795850390588;ZIC1..3:-0.808514241616;ARID5B:-0.809973827181;ZNF238:-0.816229190874;DBP:-0.896699818699;TBP:-0.973447993608;FOXP3:-0.991032817983;NKX6-1,2:-1.00371194983;SREBF1,2:-1.00759796608;HMX1:-1.01975309961;ATF6:-1.18408541729;HIF1A:-1.21042826564;NKX3-2:-1.25397448172;SMAD1..7,9:-1.28090429232;GCM1,2:-1.30983505395;TGIF1:-1.33057381497;SPZ1:-1.33915781362;MAFB:-1.37232047539;EP300:-1.47574161029;TLX2:-1.7352977263;NANOG{mouse}:-1.90031676242 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10604-108F1;search_select_hide=table117:FF:10604-108F1 | |||
}} | }} | ||
Latest revision as of 14:30, 3 June 2020
| Name: | embryonic pancreas cell line:1B2C6 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11731 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11731
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11731
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.227 |
| 10 | 10 | 0.2 |
| 100 | 100 | 0.744 |
| 101 | 101 | 0.631 |
| 102 | 102 | 0.156 |
| 103 | 103 | 0.47 |
| 104 | 104 | 0.93 |
| 105 | 105 | 0.302 |
| 106 | 106 | 0.0517 |
| 107 | 107 | 0.79 |
| 108 | 108 | 0.956 |
| 109 | 109 | 0.582 |
| 11 | 11 | 0.0194 |
| 110 | 110 | 0.298 |
| 111 | 111 | 0.177 |
| 112 | 112 | 0.189 |
| 113 | 113 | 0.0817 |
| 114 | 114 | 0.71 |
| 115 | 115 | 0.497 |
| 116 | 116 | 0.314 |
| 117 | 117 | 0.859 |
| 118 | 118 | 0.502 |
| 119 | 119 | 0.723 |
| 12 | 12 | 0.453 |
| 120 | 120 | 0.568 |
| 121 | 121 | 0.822 |
| 122 | 122 | 0.186 |
| 123 | 123 | 0.745 |
| 124 | 124 | 0.527 |
| 125 | 125 | 0.448 |
| 126 | 126 | 0.919 |
| 127 | 127 | 0.782 |
| 128 | 128 | 0.0653 |
| 129 | 129 | 0.453 |
| 13 | 13 | 0.87 |
| 130 | 130 | 0.00938 |
| 131 | 131 | 0.0131 |
| 132 | 132 | 0.479 |
| 133 | 133 | 0.0592 |
| 134 | 134 | 0.116 |
| 135 | 135 | 0.00197 |
| 136 | 136 | 0.319 |
| 137 | 137 | 0.326 |
| 138 | 138 | 0.708 |
| 139 | 139 | 0.623 |
| 14 | 14 | 0.78 |
| 140 | 140 | 0.353 |
| 141 | 141 | 0.776 |
| 142 | 142 | 0.528 |
| 143 | 143 | 0.807 |
| 144 | 144 | 0.235 |
| 145 | 145 | 0.338 |
| 146 | 146 | 0.981 |
| 147 | 147 | 0.0717 |
| 148 | 148 | 0.613 |
| 149 | 149 | 0.148 |
| 15 | 15 | 0.104 |
| 150 | 150 | 0.689 |
| 151 | 151 | 0.555 |
| 152 | 152 | 0.921 |
| 153 | 153 | 0.41 |
| 154 | 154 | 0.595 |
| 155 | 155 | 0.342 |
| 156 | 156 | 0.86 |
| 157 | 157 | 0.162 |
| 158 | 158 | 0.904 |
| 159 | 159 | 0.878 |
| 16 | 16 | 0.437 |
| 160 | 160 | 0.249 |
| 161 | 161 | 0.621 |
| 162 | 162 | 0.726 |
| 163 | 163 | 0.933 |
| 164 | 164 | 0.209 |
| 165 | 165 | 0.988 |
| 166 | 166 | 0.309 |
| 167 | 167 | 0.349 |
| 168 | 168 | 0.636 |
| 169 | 169 | 0.245 |
| 17 | 17 | 0.701 |
| 18 | 18 | 0.966 |
| 19 | 19 | 0.0411 |
| 2 | 2 | 0.19 |
| 20 | 20 | 0.0848 |
| 21 | 21 | 0.735 |
| 22 | 22 | 0.612 |
| 23 | 23 | 0.501 |
| 24 | 24 | 0.787 |
| 25 | 25 | 0.245 |
| 26 | 26 | 0.234 |
| 27 | 27 | 0.166 |
| 28 | 28 | 0.457 |
| 29 | 29 | 0.0773 |
| 3 | 3 | 0.136 |
| 30 | 30 | 0.894 |
| 31 | 31 | 0.352 |
| 32 | 32 | 4.9331e-5 |
| 33 | 33 | 0.339 |
| 34 | 34 | 0.722 |
| 35 | 35 | 0.116 |
| 36 | 36 | 0.585 |
| 37 | 37 | 0.142 |
| 38 | 38 | 0.796 |
| 39 | 39 | 0.357 |
| 4 | 4 | 0.173 |
| 40 | 40 | 0.301 |
| 41 | 41 | 0.735 |
| 42 | 42 | 0.679 |
| 43 | 43 | 0.151 |
| 44 | 44 | 0.0646 |
| 45 | 45 | 0.662 |
| 46 | 46 | 0.0523 |
| 47 | 47 | 0.431 |
| 48 | 48 | 0.42 |
| 49 | 49 | 0.543 |
| 5 | 5 | 0.291 |
| 50 | 50 | 0.274 |
| 51 | 51 | 0.85 |
| 52 | 52 | 0.508 |
| 53 | 53 | 0.141 |
| 54 | 54 | 0.919 |
| 55 | 55 | 0.844 |
| 56 | 56 | 0.495 |
| 57 | 57 | 0.298 |
| 58 | 58 | 0.0258 |
| 59 | 59 | 0.0317 |
| 6 | 6 | 0.0925 |
| 60 | 60 | 0.235 |
| 61 | 61 | 0.249 |
| 62 | 62 | 0.00267 |
| 63 | 63 | 0.909 |
| 64 | 64 | 0.301 |
| 65 | 65 | 0.472 |
| 66 | 66 | 0.0164 |
| 67 | 67 | 0.424 |
| 68 | 68 | 0.714 |
| 69 | 69 | 0.961 |
| 7 | 7 | 0.773 |
| 70 | 70 | 0.583 |
| 71 | 71 | 0.0506 |
| 72 | 72 | 0.00753 |
| 73 | 73 | 0.834 |
| 74 | 74 | 0.299 |
| 75 | 75 | 0.476 |
| 76 | 76 | 0.721 |
| 77 | 77 | 0.0525 |
| 78 | 78 | 0.984 |
| 79 | 79 | 0.00255 |
| 8 | 8 | 0.441 |
| 80 | 80 | 0.987 |
| 81 | 81 | 0.00921 |
| 82 | 82 | 0.111 |
| 83 | 83 | 0.98 |
| 84 | 84 | 0.139 |
| 85 | 85 | 0.0614 |
| 86 | 86 | 0.225 |
| 87 | 87 | 0.356 |
| 88 | 88 | 0.189 |
| 89 | 89 | 0.0401 |
| 9 | 9 | 0.477 |
| 90 | 90 | 0.955 |
| 91 | 91 | 0.00533 |
| 92 | 92 | 0.561 |
| 93 | 93 | 0.419 |
| 94 | 94 | 0.727 |
| 95 | 95 | 0.759 |
| 96 | 96 | 0.305 |
| 97 | 97 | 0.333 |
| 98 | 98 | 0.432 |
| 99 | 99 | 0.916 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11731
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100669 embryonic cell line sample
UBERON:0001264 pancreas
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001264 (pancreas)
0002100 (trunk)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100669 (embryonic cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
