FF:10606-108F3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005854 | ||
|accession_numbers=CAGE;DRX007874;DRR008746;DRZ000171;DRZ001556;DRZ011521;DRZ012906 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001264,UBERON:0002100,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100669 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0100669 | |fonse_cell_line=FF:0100669 | ||
|fonse_cell_line_closure=FF:0100669 | |fonse_cell_line_closure=FF:0100669 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3IKEI.CNhs11733.10606-108F3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3IKEI.CNhs11733.10606-108F3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3IKEI.CNhs11733.10606-108F3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3IKEI.CNhs11733.10606-108F3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3IKEI.CNhs11733.10606-108F3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10606-108F3 | |id=FF:10606-108F3 | ||
|is_a=EFO:0002091 | |is_a=EFO:0002091;;FF:0000210;;FF:0100669;;UBERON:0001264 | ||
|is_obsolete= | |||
|library_id=CNhs11733 | |||
|library_id_phase_based=2:CNhs11733 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10606 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10606 | |||
|name=embryonic pancreas cell line:1C3IKEI | |name=embryonic pancreas cell line:1C3IKEI | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11733,LSID819,release009,COMPLETED | |profile_hcage=CNhs11733,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.059286596649457,0,0,0,0,-0.160318030086386,0,0.0785207400148227,0.157791450518826,0,0,0,0,0,0,0,0,0,0,0.118573193298914,0,0,0.0582955986002405,0,0,0,0,0,-0.0979578962680575,0,0,0.0786620191698058,0,0,0,0,0,0,0,0,0,0,0,0,0.145178851223726,0.0345936100612614,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.00854750589592622,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105809304474334,0,0,0,0,0,0.0591775853351402,0,0,0,0.211887765273073,0.178706385990443,0,0,0.059286596649457,0,0.0205378420612079,0.314089891100985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00943571055187305,0,0,0,0,0.0555859862846935,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0205378420612079,0,0,0.288204218349767,0.118573193298914,0,0,0,0,0,0,0,0.257635810787416,0,0.257910129250187,-0.0249419492245576,0,0,0.0407028467232469,0,0.211618608948668,0,0,0,0,0,0.211618608948668,0,-0.00954667365365036,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,-0.0301559519746265,-0.0683442610773682,0,0,0,0,-0.15166747603541,0,-0.120879483793741,-0.0827201683234173,-0.131835330456381,-0.522215763771812,-0.04680465889238,0,0,0,-0.492748854025916,-0.216504827540853,0,0,-0.121779851751874,0.101103404758821,0,0,-0.391044581551635,0,-0.252693826772902,-0.130294857083338,0,0.0266547894045436,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.0387843783292024,-0.0258560087640887,0,0.211618608948668,0,0.259109189147095,0,0.00795845099910095,0.975941593880484,0.114340079531997,0,0.187384900583792,0,-0.302389727009913,-0.086694569683386,-0.0593450245021705,0.211887765273073,-0.147401849371139,-0.189981719549847,0,0.0591775853351402,0.111712975703711,0.00991950424232984,0.250193771816669,-0.0302447930437535,-0.726593822214124,0.19104293793768,0.118573193298914,0,0.0410642668196112,-0.219655647638124,0,0.103396095089954,-0.490114714476774,0.109231250711467,-0.063794524875438,0.140509602264448,0.280356200323867,0.267561494316165,0.0197540681927866,0.00249818900653848,0,-0.0116958845817705,0.0426781084152863,0,0.0308217675961914,-0.129713674029088,-0.203235677531978,0.282159431639044,0,-0.272358852862313,0.284943176612923,0,-0.139970851959896,0.224237151043204,0,0,0.20103034650121,0,0,0,0,0.211618608948668,0.0432185410062864,0.192504204972029,-0.0212369526068767,0,0.07553366682341,0.00331030242915143,-0.00594786556491455,0,-0.0420705875460912,0.207277540232897,0.0811361582131178,0.0684283267541728,0,-0.0526526215575438,0.00929826133510958,-0.0803403480707259,0.357412771980885,0.524229602763519,0.0260876357674275,-0.0914506862963329,0.30339695500394,-0.379063424468297,0.0374081576397807,-0.0881268324752877,0.0780421925608011,0.0313512179505701,0.218487473196198,0.11829637759179,0.0860880953296793,0.211618608948668,0.0354368874006714,0,0.21700047284832,0.0426039604079475,0.0349298378020796,-0.54043375147324,-0.15108515623092,-0.115663628471453,0,-0.0217162776799267,-0.283316251700994,0,0.0790513741754852,0.0013665272559556,0.118573193298914,0.202920354355652,0.332981479140587,-0.105841123390255,-0.0331801522048606,0,0.141092328870339,0,0,0.147863652133574,0.0527281805853778,0,0.395819547668478,0.170604663159226,-0.0215396116199507,0.095647535513734,0,0,-0.140885651919745,0,0,-0.487354870519116,0.101807448673483,0.136776245584525,-0.253326341486756,0,-0.0493362128047985,0,0,-0.177527765965176,0,0.14962462753022,0,0,0.131700642407286,-0.116628112990133,0,0,0,-0.135979093908307,0,-0.0589565109853561,0,0,0,0,0,0.0452222348628089,0.105101311686685,0,0.173236858331191,0,0,0,0,0.211618608948668,0,0,0,-0.0533699529286527,0.00303264109223299,-0.12301741567642,0.059286596649457,0,0,0,0.0724808157962918,-0.203236562094724,0,-0.0132895131987174,0,0,0,0,0.202063228560555,0,0,0.059286596649457,0,0.153888151895004,-0.157085618455852,0,0,0,0.339975563852202,0,0,0,0,0.209479002920488,0,0,-0.1271154873134,0,-0.0918573179050615,0.130036729401827,0,-0.0979319605655097,-0.62973965666894,0.196605340058338,0,0,0.416915787026709,0,0,-0.234070235781213,0.036202970333248,0.288204218349767,0,0,0,0,0,0.211618608948668,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.339627745979566,-0.0922240566585104,0,0,0,0,0,0,0,0.035180573570554,-0.190158777487709,0,0,0,0,0,0,0,0,-0.259807330714574,0,0,0,0,0,-0.0969923612426051,0,0.211618608948668,0,0.118573193298914,0.315582901037651,0,0,0.30531429738183,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229968351654844,0.0785207400148227,0,0,0,0,0,0,0,-0.156260104907176,0,0,0,0,-0.113884373708977,0,0,0,0.543881872055669,0,-0.160318030086386,0,0,0,0,0,0.115659201575081,0.059286596649457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0460288374124371,0,0.118573193298914,0.118573193298914,0,0,0.145651432138538,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.059286596649457,-0.0586845825605275,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.0265403834983882,0,0,0,0,0.03378227981495,0,0.281121939703155,-0.0189955830127254,0.0778382895748538,0,0,0.118573193298914,0.329240152589415,0,0,0.00640491041143709,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0582955986002405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0252752333740407,0,0,0,0,0,0,0,0.288204218349767,0,0,0,0,0,0,0,0,0.059286596649457,0,0,0,0,0.118573193298914,0.0385547250302759,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0.118573193298914,0,0,0,0,0,0,0,0,0,0,0,0.118573193298914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118573193298914,0,0,0,0.140059272648911,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.0341965610688872,0,0,0.118573193298914,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00501590291640708,0,0,0,0,0.240567107688848,0,0,0,0,0,0,0,-0.028141901152396,0,0,0,0,0,0,0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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=39.73051 | |rna_weight_ug=39.73051 | ||
|sample_age=19 week embryo | |sample_age=19 week embryo | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0797 | |sample_cell_catalog=RCB0797 | ||
|sample_cell_line=1C3IKEI | |sample_cell_line=1C3IKEI | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.01277146492999e-259!GO:0043226;organelle;9.61927877402404e-217!GO:0043229;intracellular organelle;3.38123622401795e-216!GO:0043231;intracellular membrane-bound organelle;3.32825055498932e-214!GO:0043227;membrane-bound organelle;4.85121844508529e-214!GO:0005737;cytoplasm;2.8196563726537e-168!GO:0044422;organelle part;5.11382998491995e-140!GO:0044446;intracellular organelle part;1.58689622935941e-138!GO:0044444;cytoplasmic part;4.34999568128165e-110!GO:0005634;nucleus;1.15947099999242e-108!GO:0032991;macromolecular complex;8.21401028441439e-103!GO:0043170;macromolecule metabolic process;1.30946048964435e-99!GO:0044237;cellular metabolic process;2.59454323985634e-99!GO:0044238;primary metabolic process;5.93940049327114e-99!GO:0030529;ribonucleoprotein complex;7.23536325861737e-91!GO:0044428;nuclear part;2.69310398022631e-87!GO:0003723;RNA binding;2.31642253438725e-81!GO:0043233;organelle lumen;6.01066666058843e-80!GO:0031974;membrane-enclosed lumen;6.01066666058843e-80!GO:0005515;protein binding;5.20598242158475e-73!GO:0043283;biopolymer metabolic process;8.15673038464011e-68!GO:0010467;gene expression;1.51216421678373e-60!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.60491530340349e-58!GO:0005739;mitochondrion;1.4557410630852e-57!GO:0006396;RNA processing;4.70095691076061e-56!GO:0016043;cellular component organization and biogenesis;1.3140780245681e-54!GO:0031981;nuclear lumen;3.29682027705376e-54!GO:0006412;translation;1.43289672442213e-53!GO:0005840;ribosome;9.06304200803036e-53!GO:0019538;protein metabolic process;3.16210314148373e-51!GO:0043234;protein complex;2.32386576093926e-50!GO:0044260;cellular macromolecule metabolic process;1.0664609858813e-46!GO:0044267;cellular protein metabolic process;1.688971768073e-46!GO:0003735;structural constituent of ribosome;8.13560679378582e-46!GO:0031090;organelle membrane;3.44475579041127e-43!GO:0016071;mRNA metabolic process;5.5756674139611e-43!GO:0033036;macromolecule localization;1.08694782817387e-42!GO:0015031;protein transport;6.78406870560727e-42!GO:0033279;ribosomal subunit;1.5481288627389e-39!GO:0009059;macromolecule biosynthetic process;6.4764489324295e-39!GO:0008380;RNA splicing;9.13597847023754e-39!GO:0008104;protein localization;1.49511777994299e-38!GO:0045184;establishment of protein localization;1.73077291502204e-38!GO:0003676;nucleic acid binding;6.04632211913061e-38!GO:0044249;cellular biosynthetic process;1.02728885203989e-37!GO:0043228;non-membrane-bound organelle;6.62780790030554e-37!GO:0043232;intracellular non-membrane-bound organelle;6.62780790030554e-37!GO:0006259;DNA metabolic process;7.16276526506782e-37!GO:0031967;organelle envelope;1.46125571527076e-36!GO:0031975;envelope;2.22639235719031e-36!GO:0009058;biosynthetic process;2.95740249275425e-36!GO:0044429;mitochondrial part;3.5632222955095e-36!GO:0006397;mRNA processing;9.49482740491215e-36!GO:0006996;organelle organization and biogenesis;4.18218542462234e-35!GO:0046907;intracellular transport;1.58834446679551e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.30233687960132e-34!GO:0005829;cytosol;2.75598043794825e-33!GO:0005654;nucleoplasm;1.15803620213359e-32!GO:0065003;macromolecular complex assembly;2.46211981032867e-32!GO:0016070;RNA metabolic process;2.21336074832224e-31!GO:0000166;nucleotide binding;2.05534240651349e-30!GO:0006886;intracellular protein transport;1.27203065779365e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.17879737911103e-28!GO:0022607;cellular component assembly;4.12091082312162e-28!GO:0005681;spliceosome;6.35492788189811e-28!GO:0044451;nucleoplasm part;6.79100630936614e-28!GO:0007049;cell cycle;9.39578767928733e-26!GO:0051649;establishment of cellular localization;1.1904534080373e-24!GO:0016462;pyrophosphatase activity;3.46857106074086e-24!GO:0051641;cellular localization;3.82125479598408e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.09533821104865e-24!GO:0005730;nucleolus;4.78979340215945e-24!GO:0017111;nucleoside-triphosphatase activity;5.83384234110411e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;7.12330613254629e-24!GO:0044445;cytosolic part;4.7715836284282e-22!GO:0005740;mitochondrial envelope;5.214803346958e-22!GO:0019866;organelle inner membrane;5.54598263584031e-22!GO:0032553;ribonucleotide binding;2.18228483342971e-21!GO:0032555;purine ribonucleotide binding;2.18228483342971e-21!GO:0015934;large ribosomal subunit;4.04407744128827e-21!GO:0017076;purine nucleotide binding;4.4250277443372e-21!GO:0008134;transcription factor binding;4.91351314178037e-21!GO:0031966;mitochondrial membrane;1.01330550420768e-20!GO:0006512;ubiquitin cycle;1.70261018939797e-20!GO:0005743;mitochondrial inner membrane;3.49600827479389e-20!GO:0006457;protein folding;4.61798170781921e-20!GO:0006974;response to DNA damage stimulus;9.46440764327976e-20!GO:0015935;small ribosomal subunit;1.66508702342009e-19!GO:0022618;protein-RNA complex assembly;4.87795828171739e-19!GO:0006119;oxidative phosphorylation;1.34034169478357e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.42294230882644e-18!GO:0016874;ligase activity;1.42294230882644e-18!GO:0005524;ATP binding;1.42294230882644e-18!GO:0012505;endomembrane system;1.72657236942537e-18!GO:0043285;biopolymer catabolic process;1.99290611498848e-18!GO:0019941;modification-dependent protein catabolic process;2.53112703103718e-18!GO:0043632;modification-dependent macromolecule catabolic process;2.53112703103718e-18!GO:0022402;cell cycle process;2.80386540108229e-18!GO:0032559;adenyl ribonucleotide binding;3.02332877759715e-18!GO:0044265;cellular macromolecule catabolic process;3.37443229059198e-18!GO:0044257;cellular protein catabolic process;4.47700689514207e-18!GO:0006511;ubiquitin-dependent protein catabolic process;5.54917538708128e-18!GO:0030554;adenyl nucleotide binding;9.42726437494291e-18!GO:0043412;biopolymer modification;9.55087548909891e-18!GO:0006366;transcription from RNA polymerase II promoter;3.6831603862057e-17!GO:0006281;DNA repair;4.57311668686584e-17!GO:0031980;mitochondrial lumen;6.19834866566854e-17!GO:0005759;mitochondrial matrix;6.19834866566854e-17!GO:0044455;mitochondrial membrane part;1.45521385825461e-16!GO:0030163;protein catabolic process;2.446994753768e-16!GO:0008135;translation factor activity, nucleic acid binding;4.12755516159654e-16!GO:0009057;macromolecule catabolic process;6.9231569737995e-16!GO:0006260;DNA replication;8.92882632183889e-16!GO:0042254;ribosome biogenesis and assembly;9.58101294328496e-16!GO:0048770;pigment granule;1.13133493956302e-15!GO:0042470;melanosome;1.13133493956302e-15!GO:0005694;chromosome;1.89753968536883e-15!GO:0005635;nuclear envelope;1.8986313868576e-15!GO:0051276;chromosome organization and biogenesis;2.55107067830823e-15!GO:0006464;protein modification process;2.6059347124848e-15!GO:0006605;protein targeting;4.77145088171425e-15!GO:0016604;nuclear body;5.96385585044382e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.05327683835339e-14!GO:0031965;nuclear membrane;1.05327683835339e-14!GO:0000278;mitotic cell cycle;1.07290161935094e-14!GO:0016887;ATPase activity;1.20983670177632e-14!GO:0003712;transcription cofactor activity;1.47866463528846e-14!GO:0044453;nuclear membrane part;1.82018087704556e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.36553863055474e-14!GO:0005761;mitochondrial ribosome;2.54084092381952e-14!GO:0000313;organellar ribosome;2.54084092381952e-14!GO:0005746;mitochondrial respiratory chain;4.09472157188213e-14!GO:0051082;unfolded protein binding;4.23009369263545e-14!GO:0042623;ATPase activity, coupled;4.9584272127257e-14!GO:0050794;regulation of cellular process;5.24221704597133e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;8.26003650316939e-14!GO:0000375;RNA splicing, via transesterification reactions;8.26003650316939e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.26003650316939e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.02456618822195e-13!GO:0048193;Golgi vesicle transport;1.38614744082631e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.98347186670269e-13!GO:0043687;post-translational protein modification;2.89462671370433e-13!GO:0009719;response to endogenous stimulus;3.07143915393727e-13!GO:0005643;nuclear pore;3.7954597963395e-13!GO:0050136;NADH dehydrogenase (quinone) activity;3.9284404901288e-13!GO:0003954;NADH dehydrogenase activity;3.9284404901288e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.9284404901288e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;5.09949816998828e-13!GO:0006913;nucleocytoplasmic transport;5.40143233265321e-13!GO:0004386;helicase activity;5.98917814302559e-13!GO:0005794;Golgi apparatus;8.05688286659105e-13!GO:0051169;nuclear transport;1.15267992076046e-12!GO:0044427;chromosomal part;1.50879432483427e-12!GO:0016192;vesicle-mediated transport;2.55157368781961e-12!GO:0006323;DNA packaging;2.55157368781961e-12!GO:0051301;cell division;2.62844847118106e-12!GO:0051186;cofactor metabolic process;2.6912901018164e-12!GO:0008026;ATP-dependent helicase activity;3.14512694263832e-12!GO:0003743;translation initiation factor activity;3.90445314860888e-12!GO:0016607;nuclear speck;8.24436249103045e-12!GO:0006399;tRNA metabolic process;8.27208112546236e-12!GO:0005783;endoplasmic reticulum;1.10829345097722e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.30931069819943e-11!GO:0042773;ATP synthesis coupled electron transport;2.30931069819943e-11!GO:0044248;cellular catabolic process;2.83862408004097e-11!GO:0051726;regulation of cell cycle;2.91768382916988e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.04443525371691e-11!GO:0045271;respiratory chain complex I;3.04443525371691e-11!GO:0005747;mitochondrial respiratory chain complex I;3.04443525371691e-11!GO:0006403;RNA localization;3.61746977410338e-11!GO:0006413;translational initiation;3.61746977410338e-11!GO:0012501;programmed cell death;4.9234183321047e-11!GO:0050657;nucleic acid transport;5.36763473665531e-11!GO:0051236;establishment of RNA localization;5.36763473665531e-11!GO:0050658;RNA transport;5.36763473665531e-11!GO:0022403;cell cycle phase;5.69519757268671e-11!GO:0000074;regulation of progression through cell cycle;5.80499179199018e-11!GO:0000087;M phase of mitotic cell cycle;5.90545799779447e-11!GO:0044432;endoplasmic reticulum part;6.00629743736775e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.08412550676058e-11!GO:0006446;regulation of translational initiation;9.58607125841152e-11!GO:0046930;pore complex;1.07204408701911e-10!GO:0006915;apoptosis;1.14761053662714e-10!GO:0007067;mitosis;1.22896632151821e-10!GO:0006364;rRNA processing;1.51297614185139e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.09035636371613e-10!GO:0016072;rRNA metabolic process;3.73853324378895e-10!GO:0050789;regulation of biological process;3.73853324378895e-10!GO:0008639;small protein conjugating enzyme activity;4.41514493317801e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.55274521649544e-10!GO:0008219;cell death;5.36242859415631e-10!GO:0016265;death;5.36242859415631e-10!GO:0048523;negative regulation of cellular process;6.24961532269453e-10!GO:0004842;ubiquitin-protein ligase activity;7.91192108715039e-10!GO:0005793;ER-Golgi intermediate compartment;8.56570333564124e-10!GO:0065002;intracellular protein transport across a membrane;8.82825768390883e-10!GO:0019222;regulation of metabolic process;9.39449847172257e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.13049419192868e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.13049419192868e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.13049419192868e-09!GO:0006461;protein complex assembly;1.27021929733186e-09!GO:0006732;coenzyme metabolic process;1.48469326098243e-09!GO:0016568;chromatin modification;1.69825866561033e-09!GO:0043038;amino acid activation;2.52365141930114e-09!GO:0006418;tRNA aminoacylation for protein translation;2.52365141930114e-09!GO:0043039;tRNA aminoacylation;2.52365141930114e-09!GO:0017038;protein import;2.97830874092582e-09!GO:0005768;endosome;3.27323200240317e-09!GO:0019787;small conjugating protein ligase activity;3.78489496609477e-09!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.07341855421131e-09!GO:0000279;M phase;4.13954651830561e-09!GO:0051028;mRNA transport;4.25864294822233e-09!GO:0008565;protein transporter activity;4.55581856593627e-09!GO:0016881;acid-amino acid ligase activity;7.22625660399565e-09!GO:0016563;transcription activator activity;1.02139487680225e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.08070869434665e-08!GO:0048519;negative regulation of biological process;1.30167796072942e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.31166291963079e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.31166291963079e-08!GO:0006261;DNA-dependent DNA replication;1.45564990007393e-08!GO:0015630;microtubule cytoskeleton;2.38520744786244e-08!GO:0043566;structure-specific DNA binding;2.87604864346909e-08!GO:0005667;transcription factor complex;3.67555575668685e-08!GO:0006163;purine nucleotide metabolic process;4.46789029670361e-08!GO:0006333;chromatin assembly or disassembly;4.71835388358748e-08!GO:0016740;transferase activity;4.78238669027095e-08!GO:0016564;transcription repressor activity;5.35098804152884e-08!GO:0016779;nucleotidyltransferase activity;5.5992143543111e-08!GO:0000785;chromatin;5.76578706159478e-08!GO:0009259;ribonucleotide metabolic process;6.20683227404189e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.24501522424868e-08!GO:0000245;spliceosome assembly;6.50484224124628e-08!GO:0065004;protein-DNA complex assembly;7.77540754141551e-08!GO:0051246;regulation of protein metabolic process;8.73312819871166e-08!GO:0009055;electron carrier activity;1.08314422346784e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.48588610434205e-07!GO:0005813;centrosome;1.52464741396282e-07!GO:0003714;transcription corepressor activity;1.65224240778205e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.74650592972689e-07!GO:0006164;purine nucleotide biosynthetic process;1.77686983140562e-07!GO:0005789;endoplasmic reticulum membrane;1.79471710739513e-07!GO:0009150;purine ribonucleotide metabolic process;2.00724850188714e-07!GO:0031324;negative regulation of cellular metabolic process;2.46614253578478e-07!GO:0005815;microtubule organizing center;2.94804041707954e-07!GO:0032446;protein modification by small protein conjugation;2.96884587405662e-07!GO:0051188;cofactor biosynthetic process;3.36855108618107e-07!GO:0003924;GTPase activity;3.45282000054388e-07!GO:0006350;transcription;3.85417882942744e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.10339949589473e-07!GO:0031323;regulation of cellular metabolic process;4.16358197239086e-07!GO:0003713;transcription coactivator activity;4.25689035969458e-07!GO:0009260;ribonucleotide biosynthetic process;4.29780598432003e-07!GO:0051170;nuclear import;4.38805278299601e-07!GO:0006888;ER to Golgi vesicle-mediated transport;4.41851528579447e-07!GO:0007005;mitochondrion organization and biogenesis;4.4426648282393e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.95982610182741e-07!GO:0016567;protein ubiquitination;6.08407604531415e-07!GO:0015986;ATP synthesis coupled proton transport;6.55281428938086e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.55281428938086e-07!GO:0003724;RNA helicase activity;7.55378277855732e-07!GO:0043623;cellular protein complex assembly;7.71475593108133e-07!GO:0009152;purine ribonucleotide biosynthetic process;8.12059127041617e-07!GO:0006606;protein import into nucleus;8.46966508367585e-07!GO:0019829;cation-transporting ATPase activity;9.23648806003975e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.10044137152289e-06!GO:0006793;phosphorus metabolic process;1.3930772856591e-06!GO:0006796;phosphate metabolic process;1.3930772856591e-06!GO:0009892;negative regulation of metabolic process;1.66460884304803e-06!GO:0009141;nucleoside triphosphate metabolic process;1.6922288114494e-06!GO:0003697;single-stranded DNA binding;1.74084125591504e-06!GO:0043067;regulation of programmed cell death;1.81434261650307e-06!GO:0016481;negative regulation of transcription;1.81910079844525e-06!GO:0009060;aerobic respiration;2.06272429582267e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.08159101229576e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.08159101229576e-06!GO:0003899;DNA-directed RNA polymerase activity;2.22108253735079e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.25557145123574e-06!GO:0042981;regulation of apoptosis;2.43948519265208e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.51417065888864e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.51417065888864e-06!GO:0044431;Golgi apparatus part;2.84048696664385e-06!GO:0044440;endosomal part;3.2033157490943e-06!GO:0010008;endosome membrane;3.2033157490943e-06!GO:0046034;ATP metabolic process;3.56798604358199e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.66336797156526e-06!GO:0051427;hormone receptor binding;4.30360381660711e-06!GO:0009056;catabolic process;4.36592200477379e-06!GO:0065007;biological regulation;4.84663940270331e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.94361691904126e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.94361691904126e-06!GO:0005762;mitochondrial large ribosomal subunit;5.42635221758756e-06!GO:0000315;organellar large ribosomal subunit;5.42635221758756e-06!GO:0000151;ubiquitin ligase complex;5.66376471939619e-06!GO:0010468;regulation of gene expression;6.72213986643905e-06!GO:0006754;ATP biosynthetic process;6.75930473300255e-06!GO:0006753;nucleoside phosphate metabolic process;6.75930473300255e-06!GO:0045259;proton-transporting ATP synthase complex;7.79597234335136e-06!GO:0009108;coenzyme biosynthetic process;7.90288210314421e-06!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.24547246946371e-06!GO:0045786;negative regulation of progression through cell cycle;9.77717828691779e-06!GO:0035257;nuclear hormone receptor binding;1.02761420459822e-05!GO:0005819;spindle;1.2388003462302e-05!GO:0005788;endoplasmic reticulum lumen;1.30757036779363e-05!GO:0016787;hydrolase activity;1.38493807493059e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.42389091346819e-05!GO:0043069;negative regulation of programmed cell death;1.42911248316164e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.56715146029542e-05!GO:0005770;late endosome;1.60476940096271e-05!GO:0048475;coated membrane;1.63270818126998e-05!GO:0030117;membrane coat;1.63270818126998e-05!GO:0005525;GTP binding;1.74280890536642e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.80453538823648e-05!GO:0031988;membrane-bound vesicle;1.85887503220625e-05!GO:0030120;vesicle coat;1.9294585869966e-05!GO:0030662;coated vesicle membrane;1.9294585869966e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.01230419676955e-05!GO:0005769;early endosome;2.08873066310284e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.1923542538453e-05!GO:0045893;positive regulation of transcription, DNA-dependent;2.37870439521104e-05!GO:0045333;cellular respiration;2.44377193066648e-05!GO:0045941;positive regulation of transcription;2.45777286763824e-05!GO:0003690;double-stranded DNA binding;2.68392987038626e-05!GO:0048522;positive regulation of cellular process;3.13177593789335e-05!GO:0006752;group transfer coenzyme metabolic process;3.27926165484561e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.37393175687671e-05!GO:0016310;phosphorylation;3.4627313927378e-05!GO:0043066;negative regulation of apoptosis;3.62267782263394e-05!GO:0008186;RNA-dependent ATPase activity;4.11777087080317e-05!GO:0051052;regulation of DNA metabolic process;4.27094243540214e-05!GO:0043021;ribonucleoprotein binding;4.32834745184127e-05!GO:0006916;anti-apoptosis;4.32834745184127e-05!GO:0032774;RNA biosynthetic process;4.33638555474167e-05!GO:0048471;perinuclear region of cytoplasm;4.42026788812084e-05!GO:0044452;nucleolar part;4.76221447984195e-05!GO:0006099;tricarboxylic acid cycle;5.11893157081276e-05!GO:0046356;acetyl-CoA catabolic process;5.11893157081276e-05!GO:0006613;cotranslational protein targeting to membrane;5.12399939396817e-05!GO:0019899;enzyme binding;5.22783537129681e-05!GO:0006351;transcription, DNA-dependent;5.39508170791854e-05!GO:0008654;phospholipid biosynthetic process;5.86765112554834e-05!GO:0003682;chromatin binding;5.99861060372746e-05!GO:0000314;organellar small ribosomal subunit;6.53851778788399e-05!GO:0005763;mitochondrial small ribosomal subunit;6.53851778788399e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.05849717561051e-05!GO:0051168;nuclear export;7.88340094199032e-05!GO:0004298;threonine endopeptidase activity;8.1048265254545e-05!GO:0006402;mRNA catabolic process;8.25396820327184e-05!GO:0051329;interphase of mitotic cell cycle;8.48173560054222e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.61117902099729e-05!GO:0005048;signal sequence binding;9.88612241144083e-05!GO:0016853;isomerase activity;0.000101178931584234!GO:0006084;acetyl-CoA metabolic process;0.000101178931584234!GO:0000139;Golgi membrane;0.00010199326272905!GO:0006334;nucleosome assembly;0.00010213659358772!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000104224274396244!GO:0031982;vesicle;0.000110192404348311!GO:0009109;coenzyme catabolic process;0.000110536930594976!GO:0005657;replication fork;0.000111151087291305!GO:0051187;cofactor catabolic process;0.000114894021836118!GO:0008094;DNA-dependent ATPase activity;0.000119604303028739!GO:0004004;ATP-dependent RNA helicase activity;0.00012732146410347!GO:0031497;chromatin assembly;0.000134909387705225!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000135852294172416!GO:0051325;interphase;0.000143968434102362!GO:0000775;chromosome, pericentric region;0.000150441683442075!GO:0009117;nucleotide metabolic process;0.00015085150459918!GO:0031410;cytoplasmic vesicle;0.000150894191768892!GO:0031072;heat shock protein binding;0.0001615947005044!GO:0006383;transcription from RNA polymerase III promoter;0.000164822326526854!GO:0016859;cis-trans isomerase activity;0.000171958200902117!GO:0045045;secretory pathway;0.000177689185274071!GO:0008361;regulation of cell size;0.000182514610289922!GO:0045454;cell redox homeostasis;0.000205537043437926!GO:0016363;nuclear matrix;0.000205537043437926!GO:0032561;guanyl ribonucleotide binding;0.000211025282080577!GO:0019001;guanyl nucleotide binding;0.000211025282080577!GO:0007264;small GTPase mediated signal transduction;0.000224643056182133!GO:0000049;tRNA binding;0.000225689354106328!GO:0007243;protein kinase cascade;0.000261534456722223!GO:0004674;protein serine/threonine kinase activity;0.000270600732546723!GO:0016049;cell growth;0.00032680763433956!GO:0008033;tRNA processing;0.000341081324137041!GO:0030880;RNA polymerase complex;0.000341081324137041!GO:0003729;mRNA binding;0.00035430540655464!GO:0045449;regulation of transcription;0.000363256060474364!GO:0000075;cell cycle checkpoint;0.000369485386205938!GO:0031252;leading edge;0.000379004517690646!GO:0006401;RNA catabolic process;0.00038633834329883!GO:0003702;RNA polymerase II transcription factor activity;0.000422288942735647!GO:0006302;double-strand break repair;0.000423794336869896!GO:0005798;Golgi-associated vesicle;0.000435504437406369!GO:0000059;protein import into nucleus, docking;0.000477183531885171!GO:0006414;translational elongation;0.000561493070258109!GO:0005885;Arp2/3 protein complex;0.000569821877477986!GO:0030867;rough endoplasmic reticulum membrane;0.00058860604834403!GO:0001558;regulation of cell growth;0.000591269404754494!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000677897010744631!GO:0032508;DNA duplex unwinding;0.000740141287736224!GO:0032392;DNA geometric change;0.000740141287736224!GO:0007051;spindle organization and biogenesis;0.000792617154318443!GO:0008250;oligosaccharyl transferase complex;0.000870470515826186!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000876932765960777!GO:0000428;DNA-directed RNA polymerase complex;0.000876932765960777!GO:0004576;oligosaccharyl transferase activity;0.000907172352277538!GO:0006352;transcription initiation;0.000942784554906432!GO:0008139;nuclear localization sequence binding;0.00105470369420258!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00105470369420258!GO:0016197;endosome transport;0.00105789314368574!GO:0005773;vacuole;0.00107059294237236!GO:0051252;regulation of RNA metabolic process;0.00123979717683535!GO:0007010;cytoskeleton organization and biogenesis;0.00130441987146103!GO:0006626;protein targeting to mitochondrion;0.00131766806004283!GO:0006839;mitochondrial transport;0.00134367666835485!GO:0003684;damaged DNA binding;0.00136197802345031!GO:0051789;response to protein stimulus;0.00139465430448903!GO:0006986;response to unfolded protein;0.00139465430448903!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0014007524470545!GO:0043681;protein import into mitochondrion;0.00141082306117712!GO:0003678;DNA helicase activity;0.00141986196330972!GO:0006275;regulation of DNA replication;0.00142199642422296!GO:0030036;actin cytoskeleton organization and biogenesis;0.00142588557673178!GO:0045892;negative regulation of transcription, DNA-dependent;0.0014377614779061!GO:0016741;transferase activity, transferring one-carbon groups;0.00143850856138917!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00146113273157346!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0014645877194808!GO:0033116;ER-Golgi intermediate compartment membrane;0.00151524943081894!GO:0035258;steroid hormone receptor binding;0.00154049880676302!GO:0015631;tubulin binding;0.00172128258583256!GO:0003711;transcription elongation regulator activity;0.00181137944132039!GO:0005874;microtubule;0.00182812574266467!GO:0051087;chaperone binding;0.00185252125059407!GO:0008168;methyltransferase activity;0.00186526169516946!GO:0046467;membrane lipid biosynthetic process;0.00191854152534944!GO:0006268;DNA unwinding during replication;0.00198649144397338!GO:0015980;energy derivation by oxidation of organic compounds;0.00217041832113168!GO:0006310;DNA recombination;0.00221258660540061!GO:0008022;protein C-terminus binding;0.00228738828019025!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00230649943216807!GO:0006612;protein targeting to membrane;0.00234703007012562!GO:0065009;regulation of a molecular function;0.00236875532930015!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0024724732784404!GO:0006284;base-excision repair;0.00249119027859298!GO:0000776;kinetochore;0.00259755712678041!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00274913447799201!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00277767510167405!GO:0015399;primary active transmembrane transporter activity;0.00277767510167405!GO:0019843;rRNA binding;0.00278531228592866!GO:0051101;regulation of DNA binding;0.00284216192905262!GO:0009893;positive regulation of metabolic process;0.00293996824268221!GO:0006355;regulation of transcription, DNA-dependent;0.00301780458154121!GO:0018196;peptidyl-asparagine modification;0.00309700552992696!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00309700552992696!GO:0048518;positive regulation of biological process;0.00316477482430082!GO:0006405;RNA export from nucleus;0.00318183417576367!GO:0005684;U2-dependent spliceosome;0.00318479882165544!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00336744087711002!GO:0016272;prefoldin complex;0.00341723408646455!GO:0006891;intra-Golgi vesicle-mediated transport;0.00350851240284306!GO:0046474;glycerophospholipid biosynthetic process;0.00352891657150117!GO:0048500;signal recognition particle;0.00364255119227557!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00408332439206234!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00408332439206234!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00408332439206234!GO:0006338;chromatin remodeling;0.00413286613390809!GO:0000323;lytic vacuole;0.0042117743066132!GO:0005764;lysosome;0.0042117743066132!GO:0030521;androgen receptor signaling pathway;0.00421657477861917!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00424139116426509!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00424139116426509!GO:0042802;identical protein binding;0.00432087674369886!GO:0030132;clathrin coat of coated pit;0.00435141762220861!GO:0019783;small conjugating protein-specific protease activity;0.00445173699497934!GO:0003746;translation elongation factor activity;0.00465207355885135!GO:0043488;regulation of mRNA stability;0.00465207355885135!GO:0043487;regulation of RNA stability;0.00465207355885135!GO:0048487;beta-tubulin binding;0.00466918530199904!GO:0019867;outer membrane;0.00478582553461757!GO:0004527;exonuclease activity;0.00493066450890775!GO:0006607;NLS-bearing substrate import into nucleus;0.00505613211297545!GO:0043284;biopolymer biosynthetic process;0.00508354686769405!GO:0006892;post-Golgi vesicle-mediated transport;0.00539843909664489!GO:0043624;cellular protein complex disassembly;0.00552985550271883!GO:0008629;induction of apoptosis by intracellular signals;0.00558628703951738!GO:0046983;protein dimerization activity;0.0057835602654698!GO:0030134;ER to Golgi transport vesicle;0.00604591023624704!GO:0031968;organelle outer membrane;0.00604591023624704!GO:0031901;early endosome membrane;0.00607327705355153!GO:0040008;regulation of growth;0.00620047413605356!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0062816532538103!GO:0031625;ubiquitin protein ligase binding;0.0062816532538103!GO:0008312;7S RNA binding;0.00655933923492912!GO:0004843;ubiquitin-specific protease activity;0.00665969508956355!GO:0006611;protein export from nucleus;0.00667172756836775!GO:0005905;coated pit;0.00696914943414473!GO:0003677;DNA binding;0.0070369570005703!GO:0043022;ribosome binding;0.0071242152117598!GO:0030176;integral to endoplasmic reticulum membrane;0.0071242152117598!GO:0046489;phosphoinositide biosynthetic process;0.00715060228773194!GO:0030029;actin filament-based process;0.00738860332377432!GO:0007006;mitochondrial membrane organization and biogenesis;0.00795896853057794!GO:0032940;secretion by cell;0.00805077235285771!GO:0006818;hydrogen transport;0.00824961683836234!GO:0006091;generation of precursor metabolites and energy;0.00833714744123278!GO:0008234;cysteine-type peptidase activity;0.00842049793594662!GO:0006417;regulation of translation;0.00893348178149975!GO:0031902;late endosome membrane;0.00894321064154762!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00925420406766747!GO:0005791;rough endoplasmic reticulum;0.00928678700158826!GO:0005637;nuclear inner membrane;0.0092925843072468!GO:0017166;vinculin binding;0.00934669544165001!GO:0015992;proton transport;0.00952136883699871!GO:0016044;membrane organization and biogenesis;0.00968901113072991!GO:0016251;general RNA polymerase II transcription factor activity;0.00982518724048238!GO:0051098;regulation of binding;0.00989149775451186!GO:0006376;mRNA splice site selection;0.0101211753635763!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0101211753635763!GO:0016311;dephosphorylation;0.0104298813845441!GO:0016791;phosphoric monoester hydrolase activity;0.0104298813845441!GO:0040029;regulation of gene expression, epigenetic;0.0105613950520712!GO:0043492;ATPase activity, coupled to movement of substances;0.0108921011780939!GO:0032984;macromolecular complex disassembly;0.0110244969966233!GO:0031124;mRNA 3'-end processing;0.0111113452717586!GO:0008287;protein serine/threonine phosphatase complex;0.0113696798185336!GO:0000922;spindle pole;0.0114749604755181!GO:0006289;nucleotide-excision repair;0.0115109820243144!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0115771536771364!GO:0045047;protein targeting to ER;0.0115771536771364!GO:0016301;kinase activity;0.0115898718030667!GO:0046966;thyroid hormone receptor binding;0.0118736879908793!GO:0009165;nucleotide biosynthetic process;0.0123878118854724!GO:0006497;protein amino acid lipidation;0.0123878118854724!GO:0005741;mitochondrial outer membrane;0.0123980510481786!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.012551990904087!GO:0015002;heme-copper terminal oxidase activity;0.012551990904087!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.012551990904087!GO:0004129;cytochrome-c oxidase activity;0.012551990904087!GO:0008092;cytoskeletal protein binding;0.012551990904087!GO:0031325;positive regulation of cellular metabolic process;0.012551990904087!GO:0000339;RNA cap binding;0.0126635790731221!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0127603109901603!GO:0005832;chaperonin-containing T-complex;0.0127954632798882!GO:0042770;DNA damage response, signal transduction;0.0128307251541525!GO:0030127;COPII vesicle coat;0.0129138096578348!GO:0012507;ER to Golgi transport vesicle membrane;0.0129138096578348!GO:0030118;clathrin coat;0.0130368192122132!GO:0006595;polyamine metabolic process;0.0130500108451025!GO:0032200;telomere organization and biogenesis;0.0133557137671418!GO:0000723;telomere maintenance;0.0133557137671418!GO:0004221;ubiquitin thiolesterase activity;0.013447603802516!GO:0050681;androgen receptor binding;0.0138497404303198!GO:0016790;thiolester hydrolase activity;0.0140718748871837!GO:0007088;regulation of mitosis;0.0140718748871837!GO:0007030;Golgi organization and biogenesis;0.0141002166376571!GO:0030658;transport vesicle membrane;0.0143302349286539!GO:0048468;cell development;0.0143434298623476!GO:0033673;negative regulation of kinase activity;0.014639737220806!GO:0006469;negative regulation of protein kinase activity;0.014639737220806!GO:0005669;transcription factor TFIID complex;0.0147951957796945!GO:0022415;viral reproductive process;0.0149875207136971!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0149875207136971!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0152528495467757!GO:0046483;heterocycle metabolic process;0.015413620420517!GO:0043241;protein complex disassembly;0.0157808224865831!GO:0022890;inorganic cation transmembrane transporter activity;0.0157808224865831!GO:0000082;G1/S transition of mitotic cell cycle;0.0160935728804968!GO:0004532;exoribonuclease activity;0.0163133580766134!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0163133580766134!GO:0008047;enzyme activator activity;0.0167220400823775!GO:0008017;microtubule binding;0.0167220400823775!GO:0030133;transport vesicle;0.016892757299335!GO:0003725;double-stranded RNA binding;0.0169820849738508!GO:0007265;Ras protein signal transduction;0.0169820849738508!GO:0006672;ceramide metabolic process;0.0177232445337392!GO:0004721;phosphoprotein phosphatase activity;0.0177870117707199!GO:0030518;steroid hormone receptor signaling pathway;0.0181069671808896!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0182346272005665!GO:0006984;ER-nuclear signaling pathway;0.0182448570744141!GO:0005732;small nucleolar ribonucleoprotein complex;0.0193860444687718!GO:0007052;mitotic spindle organization and biogenesis;0.0194802164884993!GO:0004722;protein serine/threonine phosphatase activity;0.0195320030020241!GO:0031123;RNA 3'-end processing;0.0201653515286087!GO:0048144;fibroblast proliferation;0.0201906488883554!GO:0048145;regulation of fibroblast proliferation;0.0201906488883554!GO:0006354;RNA elongation;0.0202612252962508!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0202614402250698!GO:0035035;histone acetyltransferase binding;0.0206863636966366!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0206863636966366!GO:0022406;membrane docking;0.0212313709973214!GO:0048278;vesicle docking;0.0212313709973214!GO:0031529;ruffle organization and biogenesis;0.0212313709973214!GO:0032259;methylation;0.0212599322791065!GO:0000792;heterochromatin;0.0216619166032589!GO:0000786;nucleosome;0.021682369766788!GO:0007093;mitotic cell cycle checkpoint;0.0216909378923766!GO:0006144;purine base metabolic process;0.0217935213789108!GO:0046822;regulation of nucleocytoplasmic transport;0.0218084179828598!GO:0046519;sphingoid metabolic process;0.0222411183859596!GO:0030660;Golgi-associated vesicle membrane;0.0224474686412569!GO:0006950;response to stress;0.0227417603461048!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0227471865096304!GO:0051053;negative regulation of DNA metabolic process;0.0228551553497552!GO:0051348;negative regulation of transferase activity;0.0228551553497552!GO:0007040;lysosome organization and biogenesis;0.0232010587676426!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0234967812201385!GO:0031326;regulation of cellular biosynthetic process;0.0236501006067629!GO:0005862;muscle thin filament tropomyosin;0.0236501006067629!GO:0050178;phenylpyruvate tautomerase activity;0.0238543658159726!GO:0009116;nucleoside metabolic process;0.024368471090867!GO:0000178;exosome (RNase complex);0.024368471090867!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0248162793344321!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0250807862816303!GO:0009889;regulation of biosynthetic process;0.0252329310607622!GO:0005876;spindle microtubule;0.025705559821819!GO:0030027;lamellipodium;0.0257469676515729!GO:0000096;sulfur amino acid metabolic process;0.0257469676515729!GO:0004177;aminopeptidase activity;0.0257762148289112!GO:0030503;regulation of cell redox homeostasis;0.0261811811523935!GO:0050662;coenzyme binding;0.0277213165435519!GO:0007017;microtubule-based process;0.0277890353824041!GO:0043414;biopolymer methylation;0.0278622157289886!GO:0009451;RNA modification;0.0281798684890623!GO:0051540;metal cluster binding;0.0282119752182234!GO:0051536;iron-sulfur cluster binding;0.0282119752182234!GO:0008286;insulin receptor signaling pathway;0.0282146151723232!GO:0048146;positive regulation of fibroblast proliferation;0.0282146151723232!GO:0007242;intracellular signaling cascade;0.0288334229069792!GO:0007041;lysosomal transport;0.0290498188953607!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0295366977669425!GO:0006270;DNA replication initiation;0.0296124713717807!GO:0016584;nucleosome positioning;0.0296242055155379!GO:0051539;4 iron, 4 sulfur cluster binding;0.0300729384858798!GO:0007050;cell cycle arrest;0.0304271907019654!GO:0004680;casein kinase activity;0.030478115567124!GO:0030663;COPI coated vesicle membrane;0.0305945254475942!GO:0030126;COPI vesicle coat;0.0305945254475942!GO:0000287;magnesium ion binding;0.0312537537446237!GO:0000910;cytokinesis;0.0314239762592148!GO:0042158;lipoprotein biosynthetic process;0.0324527664618157!GO:0006650;glycerophospholipid metabolic process;0.0331465461371235!GO:0043189;H4/H2A histone acetyltransferase complex;0.0331465461371235!GO:0009112;nucleobase metabolic process;0.0334378044849559!GO:0051338;regulation of transferase activity;0.0334378044849559!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0335467606574587!GO:0030137;COPI-coated vesicle;0.0335792659070797!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0343374139335887!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0346498751656052!GO:0030384;phosphoinositide metabolic process;0.0347164122872805!GO:0031570;DNA integrity checkpoint;0.0347424160273017!GO:0032507;maintenance of cellular protein localization;0.0355386862019966!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0356783750218385!GO:0004003;ATP-dependent DNA helicase activity;0.0356783750218385!GO:0007004;telomere maintenance via telomerase;0.0361026484733992!GO:0006904;vesicle docking during exocytosis;0.0362236947091365!GO:0008538;proteasome activator activity;0.0364015580305423!GO:0043549;regulation of kinase activity;0.0365610377581939!GO:0007569;cell aging;0.0367973576614462!GO:0006458;'de novo' protein folding;0.0369955787999005!GO:0051084;'de novo' posttranslational protein folding;0.0369955787999005!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0371170873378002!GO:0044450;microtubule organizing center part;0.0373060664612865!GO:0008632;apoptotic program;0.0380137008871621!GO:0000123;histone acetyltransferase complex;0.0380905850550963!GO:0005096;GTPase activator activity;0.0380905850550963!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0380973854968594!GO:0009303;rRNA transcription;0.0385916153978!GO:0006730;one-carbon compound metabolic process;0.038609220594447!GO:0045792;negative regulation of cell size;0.0388064073063743!GO:0006506;GPI anchor biosynthetic process;0.0389887622557068!GO:0007034;vacuolar transport;0.0398515236994707!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0398515236994707!GO:0000781;chromosome, telomeric region;0.0399416864577659!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0401258849644365!GO:0000725;recombinational repair;0.0403908635612276!GO:0000724;double-strand break repair via homologous recombination;0.0403908635612276!GO:0043596;nuclear replication fork;0.0403908635612276!GO:0030119;AP-type membrane coat adaptor complex;0.0405472999467991!GO:0008276;protein methyltransferase activity;0.0405946201519044!GO:0032906;transforming growth factor-beta2 production;0.0405946201519044!GO:0032909;regulation of transforming growth factor-beta2 production;0.0405946201519044!GO:0019206;nucleoside kinase activity;0.0407683298137422!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0408417684121116!GO:0006378;mRNA polyadenylation;0.0410805812096318!GO:0051287;NAD binding;0.04114127535816!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0413475674143525!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0413475674143525!GO:0050790;regulation of catalytic activity;0.0418792889688808!GO:0030911;TPR domain binding;0.0419365618943166!GO:0031461;cullin-RING ubiquitin ligase complex;0.0422125112961221!GO:0030041;actin filament polymerization;0.0427896313663381!GO:0006505;GPI anchor metabolic process;0.0433089549864452!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0433089549864452!GO:0004239;methionyl aminopeptidase activity;0.0434703741620091!GO:0000790;nuclear chromatin;0.0437080618421187!GO:0030522;intracellular receptor-mediated signaling pathway;0.0437603327244956!GO:0008408;3'-5' exonuclease activity;0.0447226439308052!GO:0006740;NADPH regeneration;0.0447344759291985!GO:0006098;pentose-phosphate shunt;0.0447344759291985!GO:0030308;negative regulation of cell growth;0.0458612127877455!GO:0001726;ruffle;0.0458612127877455!GO:0005083;small GTPase regulator activity;0.0460371590672354!GO:0030131;clathrin adaptor complex;0.0460806005948742!GO:0007059;chromosome segregation;0.0463470824350992!GO:0046982;protein heterodimerization activity;0.0470400925754518!GO:0008156;negative regulation of DNA replication;0.0472405305034155!GO:0047485;protein N-terminus binding;0.0473621333820524!GO:0051128;regulation of cellular component organization and biogenesis;0.0477679256198078!GO:0000228;nuclear chromosome;0.047839367493206!GO:0006470;protein amino acid dephosphorylation;0.0478960511623124!GO:0007346;regulation of progression through mitotic cell cycle;0.0482538660274473!GO:0031057;negative regulation of histone modification;0.0486001316176999!GO:0035067;negative regulation of histone acetylation;0.0486001316176999!GO:0000118;histone deacetylase complex;0.0488081915518745!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0488081915518745 | |||
|sample_id=10606 | |sample_id=10606 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=pancreas | |sample_tissue=pancreas | ||
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.74094333144;bHLH_family:1.56307096428;FOXQ1:1.55212522008;ONECUT1,2:0.994552694307;PDX1:0.918669537732;POU6F1:0.862511520883;RORA:0.857444528323;HES1:0.762874883255;EGR1..3:0.755478026346;AIRE:0.731277921019;ELK1,4_GABP{A,B1}:0.615827543677;ADNP_IRX_SIX_ZHX:0.587493877374;TFDP1:0.578390258525;PAX8:0.575847494831;TFAP2B:0.575743948955;CEBPA,B_DDIT3:0.558203146653;NRF1:0.533466056162;FOS_FOS{B,L1}_JUN{B,D}:0.530499182142;XCPE1{core}:0.520325119879;E2F1..5:0.509980516885;RBPJ:0.492428186596;ZNF143:0.477172095213;NFE2:0.473310356647;SP1:0.468508408399;ZFP161:0.448345654961;NFIX:0.442638025509;PPARG:0.431417383596;STAT5{A,B}:0.421528011241;FOXD3:0.419615260375;FOXA2:0.408573002899;POU1F1:0.408185838428;BREu{core}:0.391007723843;NANOG:0.389378567264;TFAP2{A,C}:0.379535948085;PAX1,9:0.355051924655;HOXA9_MEIS1:0.320901615603;POU5F1:0.299638515412;BACH2:0.297163888166;NFE2L2:0.294049206977;ATF4:0.292014936469;GTF2A1,2:0.280987074137;HOX{A6,A7,B6,B7}:0.280540246252;PRRX1,2:0.270793450053;BPTF:0.254978369456;AHR_ARNT_ARNT2:0.252307593687;RFX1:0.224831514348;RXR{A,B,G}:0.219347519281;FOSL2:0.218213651483;PITX1..3:0.209520971251;TLX1..3_NFIC{dimer}:0.209502781635;FOX{F1,F2,J1}:0.19890071173;MYB:0.198273958402;PATZ1:0.19512166619;NKX2-1,4:0.194408843802;TEAD1:0.169136681154;ZNF148:0.164324941587;MED-1{core}:0.149014901487;GLI1..3:0.146747862905;CUX2:0.145949377821;ZNF423:0.121538070823;LEF1_TCF7_TCF7L1,2:0.121435337544;REST:0.104629935307;HIC1:0.102242731349;MYOD1:0.100615619855;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.100121620564;TBX4,5:0.0996106859253;ELF1,2,4:0.0974856821223;VSX1,2:0.0892453600675;PBX1:0.0845758728612;HLF:0.0808428006338;PAX5:0.0791808917118;IKZF2:0.0330577495273;T:0.0201455187206;SOX5:0.0196634457928;MTF1:0.0193254583637;NFKB1_REL_RELA:0.000658049538987;HNF1A:-0.00251795475052;YY1:-0.0108693921558;GATA6:-0.0241782457504;TP53:-0.0277010825239;PAX2:-0.0352742825597;FOX{D1,D2}:-0.0450487951287;EN1,2:-0.0493899345271;FOX{I1,J2}:-0.0528484097238;HOX{A5,B5}:-0.0602640948032;HNF4A_NR2F1,2:-0.0768481905555;SOX17:-0.0799016165932;NR6A1:-0.0842422766731;ZBTB6:-0.0925503361836;LHX3,4:-0.0984367643889;ZBTB16:-0.109551957873;NKX2-2,8:-0.110871410388;NKX3-1:-0.117329359828;NFY{A,B,C}:-0.118992342692;ALX1:-0.126086751593;OCT4_SOX2{dimer}:-0.144294880974;CDC5L:-0.147043577385;PRDM1:-0.151047401771;LMO2:-0.156006992616;SNAI1..3:-0.157192515981;NR3C1:-0.160935082621;ATF5_CREB3:-0.162652183376;ETS1,2:-0.185773526011;ZEB1:-0.214851692528;CRX:-0.223195155586;ESR1:-0.224733075929;RXRA_VDR{dimer}:-0.235856308156;GTF2I:-0.237042493589;MEF2{A,B,C,D}:-0.245442569786;SOX2:-0.251398518261;SOX{8,9,10}:-0.254435699277;MTE{core}:-0.259364498485;CDX1,2,4:-0.261467550364;SRF:-0.278698973512;MAZ:-0.286634615238;HIF1A:-0.291664531505;ZIC1..3:-0.311236686522;NFIL3:-0.31195286501;PAX3,7:-0.326593771395;IKZF1:-0.328710513278;FOXP1:-0.329259115818;EBF1:-0.342674258342;HSF1,2:-0.344610387179;CREB1:-0.349379374852;SPI1:-0.362307214767;RFX2..5_RFXANK_RFXAP:-0.364137853896;POU2F1..3:-0.370359987858;IRF7:-0.373576777124;ZNF384:-0.381257444655;ARID5B:-0.381531655948;HOX{A4,D4}:-0.382734030133;NHLH1,2:-0.388249193227;HBP1_HMGB_SSRP1_UBTF:-0.395095168037;JUN:-0.401157769985;NR5A1,2:-0.403438113538;SPIB:-0.416114898992;TAL1_TCF{3,4,12}:-0.421628898375;FOXN1:-0.423635042728;GZF1:-0.429027628464;ATF2:-0.430571204453;TFCP2:-0.433456111511;MYBL2:-0.442185843439;FOXM1:-0.445331584854;PAX4:-0.451626959667;ESRRA:-0.463595241374;RUNX1..3:-0.481436239859;GFI1:-0.489495972411;NFE2L1:-0.490434713707;NKX2-3_NKX2-5:-0.501611120664;DMAP1_NCOR{1,2}_SMARC:-0.502119863606;TEF:-0.505274864719;NFATC1..3:-0.517393218563;STAT1,3:-0.536887817174;TFAP4:-0.54776554558;NR1H4:-0.556568581656;ALX4:-0.557020353456;STAT2,4,6:-0.561011156025;XBP1:-0.566148290317;POU3F1..4:-0.571308200946;UFEwm:-0.600235152211;GFI1B:-0.619105236523;FOXL1:-0.634703452852;IRF1,2:-0.651925758467;AR:-0.659187050276;EVI1:-0.684880979945;RREB1:-0.767108494138;MYFfamily:-0.767680034841;NKX3-2:-0.771799281365;MZF1:-0.776103019633;KLF4:-0.806258438081;DBP:-0.832417731524;FOXO1,3,4:-0.847432071954;TOPORS:-0.870881465449;FOXP3:-0.884658343367;SMAD1..7,9:-0.889919299406;SREBF1,2:-0.895342950618;PAX6:-0.941553540913;HAND1,2:-0.962016691938;ZNF238:-1.00795122703;HMGA1,2:-1.0214881531;TBP:-1.02252652363;GATA4:-1.0284695173;GCM1,2:-1.0581108625;MAFB:-1.07166088879;NKX6-1,2:-1.07424639527;TGIF1:-1.11956264221;ATF6:-1.14170126152;HMX1:-1.14809716213;EP300:-1.20122520966;SPZ1:-1.33133839438;NANOG{mouse}:-1.44400822697;TLX2:-1.64817664105 | |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.74094333144;bHLH_family:1.56307096428;FOXQ1:1.55212522008;ONECUT1,2:0.994552694307;PDX1:0.918669537732;POU6F1:0.862511520883;RORA:0.857444528323;HES1:0.762874883255;EGR1..3:0.755478026346;AIRE:0.731277921019;ELK1,4_GABP{A,B1}:0.615827543677;ADNP_IRX_SIX_ZHX:0.587493877374;TFDP1:0.578390258525;PAX8:0.575847494831;TFAP2B:0.575743948955;CEBPA,B_DDIT3:0.558203146653;NRF1:0.533466056162;FOS_FOS{B,L1}_JUN{B,D}:0.530499182142;XCPE1{core}:0.520325119879;E2F1..5:0.509980516885;RBPJ:0.492428186596;ZNF143:0.477172095213;NFE2:0.473310356647;SP1:0.468508408399;ZFP161:0.448345654961;NFIX:0.442638025509;PPARG:0.431417383596;STAT5{A,B}:0.421528011241;FOXD3:0.419615260375;FOXA2:0.408573002899;POU1F1:0.408185838428;BREu{core}:0.391007723843;NANOG:0.389378567264;TFAP2{A,C}:0.379535948085;PAX1,9:0.355051924655;HOXA9_MEIS1:0.320901615603;POU5F1:0.299638515412;BACH2:0.297163888166;NFE2L2:0.294049206977;ATF4:0.292014936469;GTF2A1,2:0.280987074137;HOX{A6,A7,B6,B7}:0.280540246252;PRRX1,2:0.270793450053;BPTF:0.254978369456;AHR_ARNT_ARNT2:0.252307593687;RFX1:0.224831514348;RXR{A,B,G}:0.219347519281;FOSL2:0.218213651483;PITX1..3:0.209520971251;TLX1..3_NFIC{dimer}:0.209502781635;FOX{F1,F2,J1}:0.19890071173;MYB:0.198273958402;PATZ1:0.19512166619;NKX2-1,4:0.194408843802;TEAD1:0.169136681154;ZNF148:0.164324941587;MED-1{core}:0.149014901487;GLI1..3:0.146747862905;CUX2:0.145949377821;ZNF423:0.121538070823;LEF1_TCF7_TCF7L1,2:0.121435337544;REST:0.104629935307;HIC1:0.102242731349;MYOD1:0.100615619855;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.100121620564;TBX4,5:0.0996106859253;ELF1,2,4:0.0974856821223;VSX1,2:0.0892453600675;PBX1:0.0845758728612;HLF:0.0808428006338;PAX5:0.0791808917118;IKZF2:0.0330577495273;T:0.0201455187206;SOX5:0.0196634457928;MTF1:0.0193254583637;NFKB1_REL_RELA:0.000658049538987;HNF1A:-0.00251795475052;YY1:-0.0108693921558;GATA6:-0.0241782457504;TP53:-0.0277010825239;PAX2:-0.0352742825597;FOX{D1,D2}:-0.0450487951287;EN1,2:-0.0493899345271;FOX{I1,J2}:-0.0528484097238;HOX{A5,B5}:-0.0602640948032;HNF4A_NR2F1,2:-0.0768481905555;SOX17:-0.0799016165932;NR6A1:-0.0842422766731;ZBTB6:-0.0925503361836;LHX3,4:-0.0984367643889;ZBTB16:-0.109551957873;NKX2-2,8:-0.110871410388;NKX3-1:-0.117329359828;NFY{A,B,C}:-0.118992342692;ALX1:-0.126086751593;OCT4_SOX2{dimer}:-0.144294880974;CDC5L:-0.147043577385;PRDM1:-0.151047401771;LMO2:-0.156006992616;SNAI1..3:-0.157192515981;NR3C1:-0.160935082621;ATF5_CREB3:-0.162652183376;ETS1,2:-0.185773526011;ZEB1:-0.214851692528;CRX:-0.223195155586;ESR1:-0.224733075929;RXRA_VDR{dimer}:-0.235856308156;GTF2I:-0.237042493589;MEF2{A,B,C,D}:-0.245442569786;SOX2:-0.251398518261;SOX{8,9,10}:-0.254435699277;MTE{core}:-0.259364498485;CDX1,2,4:-0.261467550364;SRF:-0.278698973512;MAZ:-0.286634615238;HIF1A:-0.291664531505;ZIC1..3:-0.311236686522;NFIL3:-0.31195286501;PAX3,7:-0.326593771395;IKZF1:-0.328710513278;FOXP1:-0.329259115818;EBF1:-0.342674258342;HSF1,2:-0.344610387179;CREB1:-0.349379374852;SPI1:-0.362307214767;RFX2..5_RFXANK_RFXAP:-0.364137853896;POU2F1..3:-0.370359987858;IRF7:-0.373576777124;ZNF384:-0.381257444655;ARID5B:-0.381531655948;HOX{A4,D4}:-0.382734030133;NHLH1,2:-0.388249193227;HBP1_HMGB_SSRP1_UBTF:-0.395095168037;JUN:-0.401157769985;NR5A1,2:-0.403438113538;SPIB:-0.416114898992;TAL1_TCF{3,4,12}:-0.421628898375;FOXN1:-0.423635042728;GZF1:-0.429027628464;ATF2:-0.430571204453;TFCP2:-0.433456111511;MYBL2:-0.442185843439;FOXM1:-0.445331584854;PAX4:-0.451626959667;ESRRA:-0.463595241374;RUNX1..3:-0.481436239859;GFI1:-0.489495972411;NFE2L1:-0.490434713707;NKX2-3_NKX2-5:-0.501611120664;DMAP1_NCOR{1,2}_SMARC:-0.502119863606;TEF:-0.505274864719;NFATC1..3:-0.517393218563;STAT1,3:-0.536887817174;TFAP4:-0.54776554558;NR1H4:-0.556568581656;ALX4:-0.557020353456;STAT2,4,6:-0.561011156025;XBP1:-0.566148290317;POU3F1..4:-0.571308200946;UFEwm:-0.600235152211;GFI1B:-0.619105236523;FOXL1:-0.634703452852;IRF1,2:-0.651925758467;AR:-0.659187050276;EVI1:-0.684880979945;RREB1:-0.767108494138;MYFfamily:-0.767680034841;NKX3-2:-0.771799281365;MZF1:-0.776103019633;KLF4:-0.806258438081;DBP:-0.832417731524;FOXO1,3,4:-0.847432071954;TOPORS:-0.870881465449;FOXP3:-0.884658343367;SMAD1..7,9:-0.889919299406;SREBF1,2:-0.895342950618;PAX6:-0.941553540913;HAND1,2:-0.962016691938;ZNF238:-1.00795122703;HMGA1,2:-1.0214881531;TBP:-1.02252652363;GATA4:-1.0284695173;GCM1,2:-1.0581108625;MAFB:-1.07166088879;NKX6-1,2:-1.07424639527;TGIF1:-1.11956264221;ATF6:-1.14170126152;HMX1:-1.14809716213;EP300:-1.20122520966;SPZ1:-1.33133839438;NANOG{mouse}:-1.44400822697;TLX2:-1.64817664105 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10606-108F3;search_select_hide=table117:FF:10606-108F3 | |||
}} | }} | ||
Latest revision as of 14:30, 3 June 2020
| Name: | embryonic pancreas cell line:1C3IKEI |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11733 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11733
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11733
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.189 |
| 10 | 10 | 0.222 |
| 100 | 100 | 0.786 |
| 101 | 101 | 0.552 |
| 102 | 102 | 0.207 |
| 103 | 103 | 0.727 |
| 104 | 104 | 0.872 |
| 105 | 105 | 0.954 |
| 106 | 106 | 0.00171 |
| 107 | 107 | 0.277 |
| 108 | 108 | 0.284 |
| 109 | 109 | 0.61 |
| 11 | 11 | 0.037 |
| 110 | 110 | 0.229 |
| 111 | 111 | 0.86 |
| 112 | 112 | 0.0873 |
| 113 | 113 | 0.0334 |
| 114 | 114 | 0.325 |
| 115 | 115 | 0.725 |
| 116 | 116 | 0.115 |
| 117 | 117 | 0.772 |
| 118 | 118 | 0.322 |
| 119 | 119 | 0.762 |
| 12 | 12 | 0.718 |
| 120 | 120 | 0.397 |
| 121 | 121 | 0.982 |
| 122 | 122 | 0.143 |
| 123 | 123 | 0.52 |
| 124 | 124 | 0.273 |
| 125 | 125 | 0.0853 |
| 126 | 126 | 0.453 |
| 127 | 127 | 0.908 |
| 128 | 128 | 0.00229 |
| 129 | 129 | 0.623 |
| 13 | 13 | 0.937 |
| 130 | 130 | 0.0231 |
| 131 | 131 | 0.103 |
| 132 | 132 | 0.354 |
| 133 | 133 | 0.208 |
| 134 | 134 | 0.155 |
| 135 | 135 | 0.0049 |
| 136 | 136 | 0.304 |
| 137 | 137 | 0.441 |
| 138 | 138 | 0.683 |
| 139 | 139 | 0.831 |
| 14 | 14 | 0.89 |
| 140 | 140 | 0.296 |
| 141 | 141 | 0.794 |
| 142 | 142 | 0.537 |
| 143 | 143 | 0.248 |
| 144 | 144 | 0.318 |
| 145 | 145 | 0.234 |
| 146 | 146 | 0.89 |
| 147 | 147 | 0.239 |
| 148 | 148 | 0.481 |
| 149 | 149 | 0.0696 |
| 15 | 15 | 0.406 |
| 150 | 150 | 0.52 |
| 151 | 151 | 0.478 |
| 152 | 152 | 0.974 |
| 153 | 153 | 0.329 |
| 154 | 154 | 0.697 |
| 155 | 155 | 0.157 |
| 156 | 156 | 0.819 |
| 157 | 157 | 0.603 |
| 158 | 158 | 0.473 |
| 159 | 159 | 0.688 |
| 16 | 16 | 0.24 |
| 160 | 160 | 0.0957 |
| 161 | 161 | 0.728 |
| 162 | 162 | 0.418 |
| 163 | 163 | 0.624 |
| 164 | 164 | 0.138 |
| 165 | 165 | 0.689 |
| 166 | 166 | 0.115 |
| 167 | 167 | 0.812 |
| 168 | 168 | 0.798 |
| 169 | 169 | 0.139 |
| 17 | 17 | 0.475 |
| 18 | 18 | 0.611 |
| 19 | 19 | 0.0571 |
| 2 | 2 | 0.223 |
| 20 | 20 | 0.0405 |
| 21 | 21 | 0.972 |
| 22 | 22 | 0.5 |
| 23 | 23 | 0.184 |
| 24 | 24 | 0.358 |
| 25 | 25 | 0.329 |
| 26 | 26 | 0.0275 |
| 27 | 27 | 0.0414 |
| 28 | 28 | 0.633 |
| 29 | 29 | 0.237 |
| 3 | 3 | 0.184 |
| 30 | 30 | 0.73 |
| 31 | 31 | 0.268 |
| 32 | 32 | 4.76787e-5 |
| 33 | 33 | 0.386 |
| 34 | 34 | 0.868 |
| 35 | 35 | 0.0556 |
| 36 | 36 | 0.584 |
| 37 | 37 | 0.192 |
| 38 | 38 | 0.57 |
| 39 | 39 | 0.441 |
| 4 | 4 | 0.299 |
| 40 | 40 | 0.752 |
| 41 | 41 | 0.474 |
| 42 | 42 | 0.983 |
| 43 | 43 | 0.101 |
| 44 | 44 | 0.0192 |
| 45 | 45 | 0.836 |
| 46 | 46 | 0.042 |
| 47 | 47 | 0.255 |
| 48 | 48 | 0.368 |
| 49 | 49 | 0.169 |
| 5 | 5 | 0.187 |
| 50 | 50 | 0.501 |
| 51 | 51 | 0.576 |
| 52 | 52 | 0.211 |
| 53 | 53 | 0.357 |
| 54 | 54 | 0.505 |
| 55 | 55 | 0.743 |
| 56 | 56 | 0.934 |
| 57 | 57 | 0.949 |
| 58 | 58 | 0.148 |
| 59 | 59 | 0.0329 |
| 6 | 6 | 0.21 |
| 60 | 60 | 0.0759 |
| 61 | 61 | 0.179 |
| 62 | 62 | 0.0192 |
| 63 | 63 | 0.536 |
| 64 | 64 | 0.143 |
| 65 | 65 | 0.206 |
| 66 | 66 | 0.0484 |
| 67 | 67 | 0.192 |
| 68 | 68 | 0.604 |
| 69 | 69 | 0.265 |
| 7 | 7 | 0.462 |
| 70 | 70 | 0.198 |
| 71 | 71 | 0.0453 |
| 72 | 72 | 0.0761 |
| 73 | 73 | 0.754 |
| 74 | 74 | 0.224 |
| 75 | 75 | 0.67 |
| 76 | 76 | 0.43 |
| 77 | 77 | 0.0972 |
| 78 | 78 | 0.834 |
| 79 | 79 | 0.00713 |
| 8 | 8 | 0.103 |
| 80 | 80 | 0.467 |
| 81 | 81 | 0.00943 |
| 82 | 82 | 0.0851 |
| 83 | 83 | 0.624 |
| 84 | 84 | 0.207 |
| 85 | 85 | 0.0231 |
| 86 | 86 | 0.423 |
| 87 | 87 | 0.252 |
| 88 | 88 | 0.105 |
| 89 | 89 | 0.0151 |
| 9 | 9 | 0.526 |
| 90 | 90 | 0.867 |
| 91 | 91 | 0.00693 |
| 92 | 92 | 0.0838 |
| 93 | 93 | 0.302 |
| 94 | 94 | 0.25 |
| 95 | 95 | 0.908 |
| 96 | 96 | 0.19 |
| 97 | 97 | 0.151 |
| 98 | 98 | 0.911 |
| 99 | 99 | 0.759 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11733
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100669 embryonic cell line sample
UBERON:0001264 pancreas
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001264 (pancreas)
0002100 (trunk)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100669 (embryonic cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
