FF:10609-108F6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00004998 | ||
|accession_numbers=CAGE;DRX008010;DRR008882;DRZ000307;DRZ001692 | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004998 | ||
|accession_numbers=CAGE;DRX008010;DRR008882;DRZ000307;DRZ001692;DRZ011657;DRZ013042 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057133;DRR062892;DRZ007968 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | ||
| Line 9: | Line 11: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr12:103351444..103351461,+!p1@ASCL1!2.94!875.73!ASCL1;;chr20:20348740..20348757,+!p1@INSM1!2.29!196.12!INSM1;;chr8:53166899..53166914,-!p3@ST18!2.18!150.50!ST18;;chr1:27240455..27240474,-!p1@NR0B2!2.17!148.15!NR0B2;;chr7:27205136..27205164,-!p1@HOXA9!2.14!137.33!HOXA9;;chr1:201979743..201979762,+!p1@ELF3!2.12!132.16!ELF3;;chr7:27192185..27192209,-!p1@HOXA3!2.08!118.52!HOXA3;;chr3:181429704..181429722,+!p1@SOX2!2.05!110.05!SOX2;;chr2:166326200..166326216,+!p1@CSRNP3!2.00!142.04!CSRNP3;;chr1:201979703..201979721,+!p2@ELF3!1.99!97.83!ELF3;;chr1:214161272..214161322,+!p1@PROX1!1.97!127.46!PROX1;;chr7:27224842..27224872,-!p1@HOXA11!1.92!81.36!HOXA11;;chr15:57511609..57511651,+!p2@TCF12!1.91!131.22!TCF12;;chr7:27224795..27224840,-!p2@HOXA11!1.88!75.25!HOXA11;;chr12:103352277..103352324,+!p2@ASCL1!1.81!63.96!ASCL1;;chr2:176973498..176973524,+!p1@HOXD10!1.81!63.02!HOXD10;;chr7:156803329..156803362,-!p1@MNX1!1.81!63.02!MNX1;;chr8:53162037..53162058,-!p5@ST18!1.81!63.02!ST18;;chr7:27213893..27213954,-!p1@HOXA10!1.80!61.61!HOXA10;;chr20:22564895..22564910,-!p1@FOXA2!1.79!61.14!FOXA2;;chr2:45236540..45236577,-!p1@SIX2!1.73!53.15!SIX2;;chr17:46667594..46667619,-!p1@HOXB3!1.71!50.79!HOXB3;;chr7:27205106..27205134,-!p2@HOXA9!1.67!46.09!HOXA9;;chr18:55102628..55102646,+!p2@ONECUT2!1.63!41.86!ONECUT2;;chr18:55102598..55102623,+!p1@ONECUT2!1.62!40.45!ONECUT2;;chr14:38064429..38064486,-!p1@FOXA1!1.61!39.98!FOXA1;;chr2:239148671..239148686,-!p1@HES6!1.59!133.57!HES6;;chr11:34642612..34642646,+!p1@EHF!1.59!38.10!EHF;;chr2:177001290..177001315,+!p1@HOXD3!1.56!35.27!HOXD3;;chr10:135122906..135122921,+!p4@ZNF511!1.53!32.92!ZNF511;;chr20:22565370..22565388,-!p2@FOXA2!1.53!32.92!FOXA2;;chr3:181429741..181429767,+!p2@SOX2!1.51!31.51!SOX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.51!31.04!HOXC5;;chr7:27196217..27196246,-!p2@HOXA7!1.47!28.22!HOXA7;;chr12:24103844..24103880,-!p3@SOX5!1.44!26.81!SOX5;;chr17:46682321..46682362,-!p1@HOXB6!1.41!24.93!HOXB6;;chr17:46692457..46692484,-!p2@HOXB8!1.41!24.93!HOXB8;;chr17:74137321..74137337,-!p1@FOXJ1!1.41!24.93!FOXJ1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.41!24.46!TFCP2L1;;chr12:24102576..24102623,-!p2@SOX5!1.39!23.52!SOX5;;chr7:97840743..97840786,+!p1@BHLHA15!1.38!23.05!BHLHA15;;chr18:45935720..45935772,-!p1@ZBTB7C!1.36!22.10!ZBTB7C;;chr12:103351813..103351844,+!p4@ASCL1!1.35!21.16!ASCL1;;chr1:214161358..214161377,+!p3@PROX1!1.32!19.75!PROX1;;chr1:214161328..214161348,+!p2@PROX1!1.30!18.81!PROX1;;chr2:176981499..176981522,+!p2@HOXD10!1.30!18.81!HOXD10;;chr7:14026022..14026044,-!p7@ETV1!1.30!18.81!ETV1;;chr7:27213872..27213886,-!p4@HOXA10!1.30!18.81!HOXA10;;chr7:14028743..14028799,-!p3@ETV1!1.29!23.05!ETV1;;chr7:26191809..26191890,+!p1@NFE2L3!1.28!88.42!NFE2L3;;chr11:34645791..34645836,+!p3@EHF!1.28!17.87!EHF;;chr8:60031619..60031676,-!p1@TOX!1.27!37.63!TOX;;chr8:53166916..53166925,-!p10@ST18!1.25!16.93!ST18;;chr16:79634595..79634620,-!p2@MAF!1.22!28.22!MAF;;chr10:135122868..135122893,+!p3@ZNF511!1.22!15.52!ZNF511;;chr2:177053386..177053402,+!p1@HOXD1!1.22!15.52!HOXD1;;chr12:103351694..103351704,+!p6@ASCL1!1.21!15.05!ASCL1;;chr12:103352326..103352351,+!p3@ASCL1!1.19!14.58!ASCL1;;chr20:22565185..22565223,-!p3@FOXA2!1.19!14.58!FOXA2;;chr19:24097675..24097699,+!p1@ZNF726!1.15!43.27!ZNF726;;chr10:48355030..48355090,+!p1@ZNF488!1.15!16.93!ZNF488;;chr6:21593973..21593988,+!p1@SOX4!1.14!456.21!SOX4;;chr1:209979467..209979494,-!p1@IRF6!1.12!13.64!IRF6;;chr8:53162019..53162028,-!p12@ST18!1.12!12.23!ST18;;chr17:46675558..46675577,-!p2@HOXB6!1.12!12.23!HOXB6;;chr1:10754477..10754517,-!p1@CASZ1!1.11!19.75!CASZ1;;chr19:49139477..49139552,-!p4@DBP!1.11!15.05!DBP;;chr8:60031682..60031710,-!p2@TOX!1.10!18.81!TOX;;chr20:51588873..51588953,+!p1@TSHZ2!1.10!15.52!TSHZ2;;chr16:79634624..79634642,-!p1@MAF!1.09!45.15!MAF;;chr19:21512115..21512135,-!p3@ZNF708!1.09!23.05!ZNF708;;chr17:46671108..46671147,-!p1@HOXB5!1.09!11.29!HOXB5;;chr2:71127699..71127744,+!p1@VAX2!1.08!23.05!VAX2;;chr20:50159198..50159299,-!p1@NFATC2!1.08!15.99!NFATC2;;chr6:21597765..21597779,+!p2@SOX4!1.07!87.48!SOX4;;chr19:33865009..33865090,+!p3@CEBPG!1.07!14.58!CEBPG;;chr1:27240361..27240377,-!p2@NR0B2!1.07!10.82!NR0B2;;chr2:45236579..45236596,-!p2@SIX2!1.07!10.82!SIX2;;chr1:204042233..204042249,+!p1@SOX13!1.05!64.90!SOX13;;chr1:41827095..41827155,+!p1@FOXO6!1.05!14.11!FOXO6;;chr20:62795834..62795878,+!p2@MYT1!1.05!10.35!MYT1;;chr8:80679993..80680011,-!p1@HEY1!1.04!14.58!HEY1;;chr8:53161967..53161974,-!p11@ST18!1.04!9.88!ST18;;chr2:176994408..176994492,+!p1@HOXD8!1.04!9.88!HOXD8;;chr19:24216213..24216314,+!p1@ZNF254!1.03!172.61!ZNF254;;chr7:64838786..64838809,+!p2@ZNF92!1.03!56.44!ZNF92;;chr13:73633131..73633149,+!p1@KLF5!1.02!102.53!KLF5;;chr16:79633894..79633954,-!p3@MAF!1.02!18.34!MAF;;chr9:110250697..110250738,-!p2@KLF4!1.02!11.29!KLF4;;chr8:93107451..93107468,-!p2@RUNX1T1!1.02!9.41!RUNX1T1;;chr17:46690839..46690884,-!p1@HOXB8!1.02!9.41!HOXB8;;chr3:18480217..18480239,-!p3@SATB1!1.02!9.41!SATB1;;chr20:32274179..32274213,-!p1@E2F1!1.01!63.02!E2F1;;chr19:22034809..22034878,-!p2@ZNF43!1.01!33.39!ZNF43;;chr7:64023410..64023428,-!p2@ZNF680!1.01!14.58!ZNF680;;chr6:135502501..135502546,+!p1@MYB!1.00!10.82!MYB;;chr17:46667561..46667572,-!p4@HOXB3!1.00!8.94!HOXB3;;chr20:62795799..62795819,+!p1@MYT1!1.00!8.94!MYT1;;chr2:157189180..157189290,-!p1@NR4A2!0.99!47.03!NR4A2;;chr9:3525727..3525828,-!p2@RFX3!0.99!23.05!RFX3;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.98!18.81!ZNF395;;chr19:24097706..24097731,+!p2@ZNF726!0.98!16.46!ZNF726;;chr7:15726296..15726315,-!p1@MEOX2!0.98!8.47!MEOX2;;chr2:176969228..176969260,+!p1@HOXD11!0.98!8.47!HOXD11;;chr21:47063625..47063658,+!p1@PCBP3!0.97!37.63!PCBP3;;chr19:23941647..23941672,-!p2@ZNF681!0.97!14.11!ZNF681;;chr9:3525867..3525902,-!p3@RFX3!0.95!28.22!RFX3;;chr7:86782094..86782108,+!p5@DMTF1!0.95!13.17!DMTF1;;chr3:18486354..18486377,-!p2@SATB1!0.95!9.88!SATB1;;chr7:15726243..15726293,-!p2@MEOX2!0.95!8.00!MEOX2;;chr7:96654133..96654150,-!p1@DLX5!0.95!8.00!DLX5;;chr8:60031762..60031803,-!p3@TOX!0.94!11.29!TOX;;chr19:24269981..24270007,+!p2@ZNF254!0.93!49.85!ZNF254;;chr1:23857325..23857416,-!p2@E2F2!0.93!8.94!E2F2;;chr7:99680193..99680204,-!p2@ZNF3!0.93!7.53!ZNF3;;chr2:176994919..176994931,+!p2@HOXD8!0.93!7.53!HOXD8;;chr18:55102806..55102847,+!p3@ONECUT2!0.93!7.53!ONECUT2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.92!43.27!ZNF10;;chr8:60031809..60031835,-!p4@TOX!0.92!9.41!TOX;;chr9:110252035..110252057,-!p1@KLF4!0.91!118.05!KLF4;;chr10:77161533..77161546,-!p2@ZNF503!0.91!29.63!ZNF503;;chr20:32274150..32274166,-!p2@E2F1!0.91!13.64!E2F1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.91!7.05!HOXC5;;chr14:37051798..37051831,-!p1@NKX2-8!0.91!7.05!NKX2-8;;chr15:68115672..68115691,+!p1@SKOR1!0.91!7.05!SKOR1;;chr2:176972000..176972025,+!p4@HOXD11!0.91!7.05!HOXD11;;chr2:176987441..176987454,+!p1@HOXD9!0.91!7.05!HOXD9;;chr19:23869970..23869991,-!p1@ZNF675!0.90!27.28!ZNF675;;chr19:52391220..52391251,-!p2@ZNF577!0.90!9.88!ZNF577;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.89!21.16!ZNF321P;;chr7:1570388..1570418,+!p2@MAFK!0.89!15.05!MAFK;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.35!ETV4;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!36.21!CREB3L1;;chr1:8763440..8763460,-!p2@RERE!0.88!34.80!RERE;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.88!6.58!ZNF177;;chr17:46667628..46667642,-!p2@HOXB3!0.88!6.58!HOXB3;;chr7:14026063..14026091,-!p10@ETV1!0.88!6.58!ETV1;;chr2:85981969..85982019,+!p6@ATOH8!0.88!6.58!ATOH8;;chr19:45971246..45971265,+!p1@FOSB!0.87!127.46!FOSB;;chr7:14028488..14028516,-!p2@ETV1!0.87!7.05!ETV1;;chr9:114287433..114287513,+!p1@ZNF483!0.86!16.93!ZNF483;;chr7:21467802..21467840,+!p3@SP4!0.85!13.17!SP4;;chr7:27196196..27196210,-!p5@HOXA7!0.85!6.11!HOXA7;;chr19:9546177..9546224,-!p1@ZNF266!0.84!44.68!ZNF266;;chr22:38597987..38598021,+!p2@MAFF!0.84!38.57!MAFF;;chr19:20748574..20748599,-!p1@ZNF737!0.84!38.10!ZNF737;;chr19:20959098..20959117,+!p1@ZNF66P!0.84!25.87!ZNF66P;;chr10:77161650..77161661,-!p4@ZNF503!0.84!8.47!ZNF503;;chr17:41623259..41623278,-!p7@ETV4!0.84!7.05!ETV4;;chr19:9420483..9420530,-!p@chr19:9420483..9420530,-!0.83!11.76!ZNF699;;chr15:96875657..96875760,+!p14@NR2F2!0.83!9.88!NR2F2;;chr9:110252074..110252079,-!p3@KLF4!0.83!9.88!KLF4;;chr15:71184890..71184909,-!p3@THAP10!0.83!7.53!THAP10;;chr1:114301755..114301796,-!p3@PHTF1!0.83!6.58!PHTF1;;chr6:20402102..20402152,+!p1@E2F3!0.82!24.46!E2F3;;chr19:23941680..23941704,-!p1@ZNF681!0.82!17.40!ZNF681;;chr9:116638634..116638664,+!p2@ZNF618!0.82!11.29!ZNF618;;chr5:2751762..2751784,-!p1@IRX2!0.82!5.64!IRX2;;chr8:76319876..76319926,+!p1@HNF4G!0.82!5.64!HNF4G;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.82!5.64!MEF2B;;chr2:176987463..176987479,+!p2@HOXD9!0.82!5.64!HOXD9;;chr4:149363494..149363543,-!p1@NR3C2!0.82!5.64!NR3C2;;chr1:10856694..10856715,-!p3@CASZ1!0.82!5.64!CASZ1;;chr1:214161619..214161629,+!p5@PROX1!0.82!5.64!PROX1;;chr1:3569072..3569093,+!p1@TP73!0.82!5.64!TP73;;chr19:19976683..19976709,+!p1@ZNF253!0.81!25.87!ZNF253;;chr9:116638565..116638606,+!p1@ZNF618!0.81!24.93!ZNF618;;chr3:32023232..32023273,+!p1@ZNF860!0.81!8.00!ZNF860;;chr15:61521417..61521460,-!p2@RORA!0.80!12.70!RORA;;chr19:37997812..37997866,+!p1@ZNF793!0.80!9.41!ZNF793;;chr19:21512144..21512191,-!p2@ZNF708!0.79!26.34!ZNF708;;chr7:86781916..86781963,+!p2@DMTF1!0.79!23.99!DMTF1;;chr7:138666053..138666146,-!p1@KIAA1549!0.79!23.05!KIAA1549;;chr10:35484053..35484076,+!p1@CREM!0.79!13.64!CREM;;chr17:46675420..46675465,-!p3@HOXB6!0.79!6.11!HOXB6;;chr15:61521462..61521482,-!p4@RORA!0.79!5.17!RORA;;chr15:61521495..61521506,-!p5@RORA!0.79!5.17!RORA;;chr7:27239740..27239759,-!p2@HOXA13!0.79!5.17!HOXA13;;chr8:93107696..93107716,-!p8@RUNX1T1!0.79!5.17!RUNX1T1;;chr1:214161428..214161437,+!p6@PROX1!0.79!5.17!PROX1;;chr2:200320768..200320800,-!p4@SATB2!0.79!5.17!SATB2;;chr13:79177703..79177729,-!p2@POU4F1!0.79!5.17!POU4F1;;chrX:129244454..129244488,-!p1@ELF4!0.78!39.98!ELF4;;chr3:141087393..141087426,+!p3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| |expression_enrichment_score=chr12:103351444..103351461,+!p1@ASCL1!2.94!875.73!ASCL1;;chr20:20348740..20348757,+!p1@INSM1!2.29!196.12!INSM1;;chr8:53166899..53166914,-!p3@ST18!2.18!150.50!ST18;;chr1:27240455..27240474,-!p1@NR0B2!2.17!148.15!NR0B2;;chr7:27205136..27205164,-!p1@HOXA9!2.14!137.33!HOXA9;;chr1:201979743..201979762,+!p1@ELF3!2.12!132.16!ELF3;;chr7:27192185..27192209,-!p1@HOXA3!2.08!118.52!HOXA3;;chr3:181429704..181429722,+!p1@SOX2!2.05!110.05!SOX2;;chr2:166326200..166326216,+!p1@CSRNP3!2.00!142.04!CSRNP3;;chr1:201979703..201979721,+!p2@ELF3!1.99!97.83!ELF3;;chr1:214161272..214161322,+!p1@PROX1!1.97!127.46!PROX1;;chr7:27224842..27224872,-!p1@HOXA11!1.92!81.36!HOXA11;;chr15:57511609..57511651,+!p2@TCF12!1.91!131.22!TCF12;;chr7:27224795..27224840,-!p2@HOXA11!1.88!75.25!HOXA11;;chr12:103352277..103352324,+!p2@ASCL1!1.81!63.96!ASCL1;;chr2:176973498..176973524,+!p1@HOXD10!1.81!63.02!HOXD10;;chr7:156803329..156803362,-!p1@MNX1!1.81!63.02!MNX1;;chr8:53162037..53162058,-!p5@ST18!1.81!63.02!ST18;;chr7:27213893..27213954,-!p1@HOXA10!1.80!61.61!HOXA10;;chr20:22564895..22564910,-!p1@FOXA2!1.79!61.14!FOXA2;;chr2:45236540..45236577,-!p1@SIX2!1.73!53.15!SIX2;;chr17:46667594..46667619,-!p1@HOXB3!1.71!50.79!HOXB3;;chr7:27205106..27205134,-!p2@HOXA9!1.67!46.09!HOXA9;;chr18:55102628..55102646,+!p2@ONECUT2!1.63!41.86!ONECUT2;;chr18:55102598..55102623,+!p1@ONECUT2!1.62!40.45!ONECUT2;;chr14:38064429..38064486,-!p1@FOXA1!1.61!39.98!FOXA1;;chr2:239148671..239148686,-!p1@HES6!1.59!133.57!HES6;;chr11:34642612..34642646,+!p1@EHF!1.59!38.10!EHF;;chr2:177001290..177001315,+!p1@HOXD3!1.56!35.27!HOXD3;;chr10:135122906..135122921,+!p4@ZNF511!1.53!32.92!ZNF511;;chr20:22565370..22565388,-!p2@FOXA2!1.53!32.92!FOXA2;;chr3:181429741..181429767,+!p2@SOX2!1.51!31.51!SOX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.51!31.04!HOXC5;;chr7:27196217..27196246,-!p2@HOXA7!1.47!28.22!HOXA7;;chr12:24103844..24103880,-!p3@SOX5!1.44!26.81!SOX5;;chr17:46682321..46682362,-!p1@HOXB6!1.41!24.93!HOXB6;;chr17:46692457..46692484,-!p2@HOXB8!1.41!24.93!HOXB8;;chr17:74137321..74137337,-!p1@FOXJ1!1.41!24.93!FOXJ1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.41!24.46!TFCP2L1;;chr12:24102576..24102623,-!p2@SOX5!1.39!23.52!SOX5;;chr7:97840743..97840786,+!p1@BHLHA15!1.38!23.05!BHLHA15;;chr18:45935720..45935772,-!p1@ZBTB7C!1.36!22.10!ZBTB7C;;chr12:103351813..103351844,+!p4@ASCL1!1.35!21.16!ASCL1;;chr1:214161358..214161377,+!p3@PROX1!1.32!19.75!PROX1;;chr1:214161328..214161348,+!p2@PROX1!1.30!18.81!PROX1;;chr2:176981499..176981522,+!p2@HOXD10!1.30!18.81!HOXD10;;chr7:14026022..14026044,-!p7@ETV1!1.30!18.81!ETV1;;chr7:27213872..27213886,-!p4@HOXA10!1.30!18.81!HOXA10;;chr7:14028743..14028799,-!p3@ETV1!1.29!23.05!ETV1;;chr7:26191809..26191890,+!p1@NFE2L3!1.28!88.42!NFE2L3;;chr11:34645791..34645836,+!p3@EHF!1.28!17.87!EHF;;chr8:60031619..60031676,-!p1@TOX!1.27!37.63!TOX;;chr8:53166916..53166925,-!p10@ST18!1.25!16.93!ST18;;chr16:79634595..79634620,-!p2@MAF!1.22!28.22!MAF;;chr10:135122868..135122893,+!p3@ZNF511!1.22!15.52!ZNF511;;chr2:177053386..177053402,+!p1@HOXD1!1.22!15.52!HOXD1;;chr12:103351694..103351704,+!p6@ASCL1!1.21!15.05!ASCL1;;chr12:103352326..103352351,+!p3@ASCL1!1.19!14.58!ASCL1;;chr20:22565185..22565223,-!p3@FOXA2!1.19!14.58!FOXA2;;chr19:24097675..24097699,+!p1@ZNF726!1.15!43.27!ZNF726;;chr10:48355030..48355090,+!p1@ZNF488!1.15!16.93!ZNF488;;chr6:21593973..21593988,+!p1@SOX4!1.14!456.21!SOX4;;chr1:209979467..209979494,-!p1@IRF6!1.12!13.64!IRF6;;chr8:53162019..53162028,-!p12@ST18!1.12!12.23!ST18;;chr17:46675558..46675577,-!p2@HOXB6!1.12!12.23!HOXB6;;chr1:10754477..10754517,-!p1@CASZ1!1.11!19.75!CASZ1;;chr19:49139477..49139552,-!p4@DBP!1.11!15.05!DBP;;chr8:60031682..60031710,-!p2@TOX!1.10!18.81!TOX;;chr20:51588873..51588953,+!p1@TSHZ2!1.10!15.52!TSHZ2;;chr16:79634624..79634642,-!p1@MAF!1.09!45.15!MAF;;chr19:21512115..21512135,-!p3@ZNF708!1.09!23.05!ZNF708;;chr17:46671108..46671147,-!p1@HOXB5!1.09!11.29!HOXB5;;chr2:71127699..71127744,+!p1@VAX2!1.08!23.05!VAX2;;chr20:50159198..50159299,-!p1@NFATC2!1.08!15.99!NFATC2;;chr6:21597765..21597779,+!p2@SOX4!1.07!87.48!SOX4;;chr19:33865009..33865090,+!p3@CEBPG!1.07!14.58!CEBPG;;chr1:27240361..27240377,-!p2@NR0B2!1.07!10.82!NR0B2;;chr2:45236579..45236596,-!p2@SIX2!1.07!10.82!SIX2;;chr1:204042233..204042249,+!p1@SOX13!1.05!64.90!SOX13;;chr1:41827095..41827155,+!p1@FOXO6!1.05!14.11!FOXO6;;chr20:62795834..62795878,+!p2@MYT1!1.05!10.35!MYT1;;chr8:80679993..80680011,-!p1@HEY1!1.04!14.58!HEY1;;chr8:53161967..53161974,-!p11@ST18!1.04!9.88!ST18;;chr2:176994408..176994492,+!p1@HOXD8!1.04!9.88!HOXD8;;chr19:24216213..24216314,+!p1@ZNF254!1.03!172.61!ZNF254;;chr7:64838786..64838809,+!p2@ZNF92!1.03!56.44!ZNF92;;chr13:73633131..73633149,+!p1@KLF5!1.02!102.53!KLF5;;chr16:79633894..79633954,-!p3@MAF!1.02!18.34!MAF;;chr9:110250697..110250738,-!p2@KLF4!1.02!11.29!KLF4;;chr8:93107451..93107468,-!p2@RUNX1T1!1.02!9.41!RUNX1T1;;chr17:46690839..46690884,-!p1@HOXB8!1.02!9.41!HOXB8;;chr3:18480217..18480239,-!p3@SATB1!1.02!9.41!SATB1;;chr20:32274179..32274213,-!p1@E2F1!1.01!63.02!E2F1;;chr19:22034809..22034878,-!p2@ZNF43!1.01!33.39!ZNF43;;chr7:64023410..64023428,-!p2@ZNF680!1.01!14.58!ZNF680;;chr6:135502501..135502546,+!p1@MYB!1.00!10.82!MYB;;chr17:46667561..46667572,-!p4@HOXB3!1.00!8.94!HOXB3;;chr20:62795799..62795819,+!p1@MYT1!1.00!8.94!MYT1;;chr2:157189180..157189290,-!p1@NR4A2!0.99!47.03!NR4A2;;chr9:3525727..3525828,-!p2@RFX3!0.99!23.05!RFX3;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.98!18.81!ZNF395;;chr19:24097706..24097731,+!p2@ZNF726!0.98!16.46!ZNF726;;chr7:15726296..15726315,-!p1@MEOX2!0.98!8.47!MEOX2;;chr2:176969228..176969260,+!p1@HOXD11!0.98!8.47!HOXD11;;chr21:47063625..47063658,+!p1@PCBP3!0.97!37.63!PCBP3;;chr19:23941647..23941672,-!p2@ZNF681!0.97!14.11!ZNF681;;chr9:3525867..3525902,-!p3@RFX3!0.95!28.22!RFX3;;chr7:86782094..86782108,+!p5@DMTF1!0.95!13.17!DMTF1;;chr3:18486354..18486377,-!p2@SATB1!0.95!9.88!SATB1;;chr7:15726243..15726293,-!p2@MEOX2!0.95!8.00!MEOX2;;chr7:96654133..96654150,-!p1@DLX5!0.95!8.00!DLX5;;chr8:60031762..60031803,-!p3@TOX!0.94!11.29!TOX;;chr19:24269981..24270007,+!p2@ZNF254!0.93!49.85!ZNF254;;chr1:23857325..23857416,-!p2@E2F2!0.93!8.94!E2F2;;chr7:99680193..99680204,-!p2@ZNF3!0.93!7.53!ZNF3;;chr2:176994919..176994931,+!p2@HOXD8!0.93!7.53!HOXD8;;chr18:55102806..55102847,+!p3@ONECUT2!0.93!7.53!ONECUT2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.92!43.27!ZNF10;;chr8:60031809..60031835,-!p4@TOX!0.92!9.41!TOX;;chr9:110252035..110252057,-!p1@KLF4!0.91!118.05!KLF4;;chr10:77161533..77161546,-!p2@ZNF503!0.91!29.63!ZNF503;;chr20:32274150..32274166,-!p2@E2F1!0.91!13.64!E2F1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.91!7.05!HOXC5;;chr14:37051798..37051831,-!p1@NKX2-8!0.91!7.05!NKX2-8;;chr15:68115672..68115691,+!p1@SKOR1!0.91!7.05!SKOR1;;chr2:176972000..176972025,+!p4@HOXD11!0.91!7.05!HOXD11;;chr2:176987441..176987454,+!p1@HOXD9!0.91!7.05!HOXD9;;chr19:23869970..23869991,-!p1@ZNF675!0.90!27.28!ZNF675;;chr19:52391220..52391251,-!p2@ZNF577!0.90!9.88!ZNF577;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.89!21.16!ZNF321P;;chr7:1570388..1570418,+!p2@MAFK!0.89!15.05!MAFK;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.35!ETV4;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!36.21!CREB3L1;;chr1:8763440..8763460,-!p2@RERE!0.88!34.80!RERE;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.88!6.58!ZNF177;;chr17:46667628..46667642,-!p2@HOXB3!0.88!6.58!HOXB3;;chr7:14026063..14026091,-!p10@ETV1!0.88!6.58!ETV1;;chr2:85981969..85982019,+!p6@ATOH8!0.88!6.58!ATOH8;;chr19:45971246..45971265,+!p1@FOSB!0.87!127.46!FOSB;;chr7:14028488..14028516,-!p2@ETV1!0.87!7.05!ETV1;;chr9:114287433..114287513,+!p1@ZNF483!0.86!16.93!ZNF483;;chr7:21467802..21467840,+!p3@SP4!0.85!13.17!SP4;;chr7:27196196..27196210,-!p5@HOXA7!0.85!6.11!HOXA7;;chr19:9546177..9546224,-!p1@ZNF266!0.84!44.68!ZNF266;;chr22:38597987..38598021,+!p2@MAFF!0.84!38.57!MAFF;;chr19:20748574..20748599,-!p1@ZNF737!0.84!38.10!ZNF737;;chr19:20959098..20959117,+!p1@ZNF66P!0.84!25.87!ZNF66P;;chr10:77161650..77161661,-!p4@ZNF503!0.84!8.47!ZNF503;;chr17:41623259..41623278,-!p7@ETV4!0.84!7.05!ETV4;;chr19:9420483..9420530,-!p@chr19:9420483..9420530,-!0.83!11.76!ZNF699;;chr15:96875657..96875760,+!p14@NR2F2!0.83!9.88!NR2F2;;chr9:110252074..110252079,-!p3@KLF4!0.83!9.88!KLF4;;chr15:71184890..71184909,-!p3@THAP10!0.83!7.53!THAP10;;chr1:114301755..114301796,-!p3@PHTF1!0.83!6.58!PHTF1;;chr6:20402102..20402152,+!p1@E2F3!0.82!24.46!E2F3;;chr19:23941680..23941704,-!p1@ZNF681!0.82!17.40!ZNF681;;chr9:116638634..116638664,+!p2@ZNF618!0.82!11.29!ZNF618;;chr5:2751762..2751784,-!p1@IRX2!0.82!5.64!IRX2;;chr8:76319876..76319926,+!p1@HNF4G!0.82!5.64!HNF4G;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.82!5.64!MEF2B;;chr2:176987463..176987479,+!p2@HOXD9!0.82!5.64!HOXD9;;chr4:149363494..149363543,-!p1@NR3C2!0.82!5.64!NR3C2;;chr1:10856694..10856715,-!p3@CASZ1!0.82!5.64!CASZ1;;chr1:214161619..214161629,+!p5@PROX1!0.82!5.64!PROX1;;chr1:3569072..3569093,+!p1@TP73!0.82!5.64!TP73;;chr19:19976683..19976709,+!p1@ZNF253!0.81!25.87!ZNF253;;chr9:116638565..116638606,+!p1@ZNF618!0.81!24.93!ZNF618;;chr3:32023232..32023273,+!p1@ZNF860!0.81!8.00!ZNF860;;chr15:61521417..61521460,-!p2@RORA!0.80!12.70!RORA;;chr19:37997812..37997866,+!p1@ZNF793!0.80!9.41!ZNF793;;chr19:21512144..21512191,-!p2@ZNF708!0.79!26.34!ZNF708;;chr7:86781916..86781963,+!p2@DMTF1!0.79!23.99!DMTF1;;chr7:138666053..138666146,-!p1@KIAA1549!0.79!23.05!KIAA1549;;chr10:35484053..35484076,+!p1@CREM!0.79!13.64!CREM;;chr17:46675420..46675465,-!p3@HOXB6!0.79!6.11!HOXB6;;chr15:61521462..61521482,-!p4@RORA!0.79!5.17!RORA;;chr15:61521495..61521506,-!p5@RORA!0.79!5.17!RORA;;chr7:27239740..27239759,-!p2@HOXA13!0.79!5.17!HOXA13;;chr8:93107696..93107716,-!p8@RUNX1T1!0.79!5.17!RUNX1T1;;chr1:214161428..214161437,+!p6@PROX1!0.79!5.17!PROX1;;chr2:200320768..200320800,-!p4@SATB2!0.79!5.17!SATB2;;chr13:79177703..79177729,-!p2@POU4F1!0.79!5.17!POU4F1;;chrX:129244454..129244488,-!p1@ELF4!0.78!39.98!ELF4;;chr3:141087393..141087426,+!p3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| ||
| Line 40: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10609-108F6 | |id=FF:10609-108F6 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0101533 | |is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0101533 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11734 | |library_id=CNhs11734 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs11734 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10609 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10609 | |||
|name=small-cell gastrointestinal carcinoma cell line:ECC4 | |name=small-cell gastrointestinal carcinoma cell line:ECC4 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 50: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11734,LSID819,release009,COMPLETED | |profile_hcage=CNhs11734,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
| Line 66: | Line 78: | ||
|rna_tube_id=108F6 | |rna_tube_id=108F6 | ||
|rna_weight_ug=19.20843 | |rna_weight_ug=19.20843 | ||
|rnaseq_library_id=RDhi10076 | |||
|sample_age=45 | |sample_age=45 | ||
|sample_category=cell lines | |sample_category=cell lines | ||
| Line 89: | Line 102: | ||
|top_motifs=SNAI1..3:2.82966662231;LMO2:2.80810727022;ZEB1:2.61779373638;ARID5B:2.37620166644;MYOD1:2.14016117177;ATF6:2.12338680858;NKX6-1,2:2.02198606187;ELK1,4_GABP{A,B1}:1.98792448444;HAND1,2:1.88268599982;FOXQ1:1.82048048965;ONECUT1,2:1.62349829394;RFX1:1.56595650372;ALX1:1.46611847342;NKX2-3_NKX2-5:1.46217787488;HOX{A6,A7,B6,B7}:1.40546706655;FOX{D1,D2}:1.36410976402;ZBTB16:1.31296992563;PDX1:1.2507275433;NFY{A,B,C}:1.17890125882;BREu{core}:1.13296732731;RFX2..5_RFXANK_RFXAP:1.09413095437;NKX3-2:1.09342025096;DBP:1.06460929891;NRF1:1.05853044614;TEF:1.03588582507;PAX3,7:1.03425012285;NHLH1,2:0.894839746258;TGIF1:0.882917473114;NKX3-1:0.874431633943;GFI1:0.861675762674;E2F1..5:0.854347933905;FOXA2:0.844746315923;bHLH_family:0.837360621691;FOX{F1,F2,J1}:0.800906934456;EVI1:0.785363684612;T:0.778568015493;POU6F1:0.770118504023;FOXN1:0.765396417639;FOXO1,3,4:0.730562550394;YY1:0.718779104192;XCPE1{core}:0.700158673185;ZNF143:0.687496383969;NR6A1:0.670125185888;FOXP1:0.656731253173;SOX{8,9,10}:0.646308742531;ATF4:0.637838935366;HIF1A:0.594111430468;MYFfamily:0.586348589748;ATF5_CREB3:0.534373889299;NANOG:0.52841086957;ATF2:0.520880549136;ADNP_IRX_SIX_ZHX:0.498970066369;PAX4:0.487609566771;FOXL1:0.482875803658;AIRE:0.438606169662;UFEwm:0.422450741482;MAFB:0.418192842213;FOX{I1,J2}:0.399013082672;REST:0.397706521823;PAX8:0.37953551058;SREBF1,2:0.372109685882;GFI1B:0.36125786171;NR5A1,2:0.354847910932;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.354214504555;FOXM1:0.347507422122;TBX4,5:0.340892711219;POU2F1..3:0.329128784654;ZBTB6:0.306312697182;CDX1,2,4:0.245322022597;JUN:0.232124577324;POU1F1:0.230957993791;IKZF2:0.208797320863;HOX{A4,D4}:0.198303512984;PBX1:0.187330756707;RORA:0.1641640981;PPARG:0.16295017478;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.153714387232;XBP1:0.150749937797;MED-1{core}:0.139665325649;PITX1..3:0.122600334868;TFAP2B:0.100644855846;AR:0.0978951617563;SOX2:0.0959041498105;HNF4A_NR2F1,2:0.0951090515887;EGR1..3:0.0540941749219;GCM1,2:0.0322086029962;ELF1,2,4:0.0107131676253;FOXD3:-0.000180661318901;SP1:-0.00359005341065;KLF4:-0.0222532076833;ALX4:-0.0505504027251;SPZ1:-0.0597658264965;NKX2-1,4:-0.0695876319057;STAT1,3:-0.0862866736143;FOSL2:-0.125634946427;TLX2:-0.129162292964;EBF1:-0.133041970626;HMX1:-0.139976189777;HIC1:-0.162199109449;HNF1A:-0.164478179584;SOX17:-0.180965930277;MEF2{A,B,C,D}:-0.181663576298;CUX2:-0.213731630974;TOPORS:-0.216663757848;CREB1:-0.22524590793;ZIC1..3:-0.239423547065;MTE{core}:-0.240890634552;TFDP1:-0.250860561697;POU3F1..4:-0.290904066434;MYB:-0.295402644838;MTF1:-0.318523659244;AHR_ARNT_ARNT2:-0.333448880846;GATA4:-0.336116893819;NANOG{mouse}:-0.342875566271;GATA6:-0.351742133227;FOS_FOS{B,L1}_JUN{B,D}:-0.357347993356;NFE2L1:-0.387363862693;ETS1,2:-0.394820215053;ZFP161:-0.412414899881;NKX2-2,8:-0.413705471346;HOXA9_MEIS1:-0.426902445187;HLF:-0.434744150747;EP300:-0.446581570052;TFAP2{A,C}:-0.458140552763;BACH2:-0.472848054295;EN1,2:-0.494681692897;TAL1_TCF{3,4,12}:-0.502169806553;ZNF423:-0.510814186666;TBP:-0.521054047887;RREB1:-0.524842221737;LHX3,4:-0.528543188534;GTF2I:-0.547833630904;GZF1:-0.549252066116;NFE2:-0.555831707454;SPIB:-0.565863353262;TFAP4:-0.595001375842;SPI1:-0.596850368772;HBP1_HMGB_SSRP1_UBTF:-0.633496021684;FOXP3:-0.649315446137;OCT4_SOX2{dimer}:-0.650733524009;IRF1,2:-0.668825057649;SOX5:-0.672265265624;TFCP2:-0.685200608416;NFKB1_REL_RELA:-0.720615074475;CRX:-0.744078633141;STAT5{A,B}:-0.776852700849;TP53:-0.778328962321;NR1H4:-0.785974445624;PAX2:-0.789489475516;MAZ:-0.803387329753;CEBPA,B_DDIT3:-0.804838252384;PRRX1,2:-0.805254698062;RUNX1..3:-0.806892220341;PAX1,9:-0.814363709987;POU5F1:-0.827476924889;BPTF:-0.84863265796;DMAP1_NCOR{1,2}_SMARC:-0.883797227882;NFE2L2:-0.899367612255;ESR1:-0.912575598405;GLI1..3:-0.914228511586;STAT2,4,6:-0.918293478743;VSX1,2:-0.936339047584;CDC5L:-0.946580690778;RBPJ:-1.00066122219;PATZ1:-1.00905867371;HSF1,2:-1.02300709406;RXR{A,B,G}:-1.02481144755;IKZF1:-1.02602797347;HMGA1,2:-1.03034694592;TEAD1:-1.03392112052;RXRA_VDR{dimer}:-1.05281930134;LEF1_TCF7_TCF7L1,2:-1.08155725044;PAX5:-1.11926435339;ESRRA:-1.15529875162;IRF7:-1.17722268307;NR3C1:-1.1914320734;ZNF384:-1.23393778498;HES1:-1.2510269837;ZNF238:-1.27586296533;NFIX:-1.30198303953;ZNF148:-1.34129396876;MZF1:-1.35668903869;PAX6:-1.41787149199;GTF2A1,2:-1.45241138012;PRDM1:-1.47053764108;TLX1..3_NFIC{dimer}:-1.50774039115;SRF:-1.50860067718;SMAD1..7,9:-1.54451789265;NFIL3:-1.75914889672;NFATC1..3:-1.83153101634;MYBL2:-1.90421920982;HOX{A5,B5}:-1.91804827578 | |top_motifs=SNAI1..3:2.82966662231;LMO2:2.80810727022;ZEB1:2.61779373638;ARID5B:2.37620166644;MYOD1:2.14016117177;ATF6:2.12338680858;NKX6-1,2:2.02198606187;ELK1,4_GABP{A,B1}:1.98792448444;HAND1,2:1.88268599982;FOXQ1:1.82048048965;ONECUT1,2:1.62349829394;RFX1:1.56595650372;ALX1:1.46611847342;NKX2-3_NKX2-5:1.46217787488;HOX{A6,A7,B6,B7}:1.40546706655;FOX{D1,D2}:1.36410976402;ZBTB16:1.31296992563;PDX1:1.2507275433;NFY{A,B,C}:1.17890125882;BREu{core}:1.13296732731;RFX2..5_RFXANK_RFXAP:1.09413095437;NKX3-2:1.09342025096;DBP:1.06460929891;NRF1:1.05853044614;TEF:1.03588582507;PAX3,7:1.03425012285;NHLH1,2:0.894839746258;TGIF1:0.882917473114;NKX3-1:0.874431633943;GFI1:0.861675762674;E2F1..5:0.854347933905;FOXA2:0.844746315923;bHLH_family:0.837360621691;FOX{F1,F2,J1}:0.800906934456;EVI1:0.785363684612;T:0.778568015493;POU6F1:0.770118504023;FOXN1:0.765396417639;FOXO1,3,4:0.730562550394;YY1:0.718779104192;XCPE1{core}:0.700158673185;ZNF143:0.687496383969;NR6A1:0.670125185888;FOXP1:0.656731253173;SOX{8,9,10}:0.646308742531;ATF4:0.637838935366;HIF1A:0.594111430468;MYFfamily:0.586348589748;ATF5_CREB3:0.534373889299;NANOG:0.52841086957;ATF2:0.520880549136;ADNP_IRX_SIX_ZHX:0.498970066369;PAX4:0.487609566771;FOXL1:0.482875803658;AIRE:0.438606169662;UFEwm:0.422450741482;MAFB:0.418192842213;FOX{I1,J2}:0.399013082672;REST:0.397706521823;PAX8:0.37953551058;SREBF1,2:0.372109685882;GFI1B:0.36125786171;NR5A1,2:0.354847910932;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.354214504555;FOXM1:0.347507422122;TBX4,5:0.340892711219;POU2F1..3:0.329128784654;ZBTB6:0.306312697182;CDX1,2,4:0.245322022597;JUN:0.232124577324;POU1F1:0.230957993791;IKZF2:0.208797320863;HOX{A4,D4}:0.198303512984;PBX1:0.187330756707;RORA:0.1641640981;PPARG:0.16295017478;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.153714387232;XBP1:0.150749937797;MED-1{core}:0.139665325649;PITX1..3:0.122600334868;TFAP2B:0.100644855846;AR:0.0978951617563;SOX2:0.0959041498105;HNF4A_NR2F1,2:0.0951090515887;EGR1..3:0.0540941749219;GCM1,2:0.0322086029962;ELF1,2,4:0.0107131676253;FOXD3:-0.000180661318901;SP1:-0.00359005341065;KLF4:-0.0222532076833;ALX4:-0.0505504027251;SPZ1:-0.0597658264965;NKX2-1,4:-0.0695876319057;STAT1,3:-0.0862866736143;FOSL2:-0.125634946427;TLX2:-0.129162292964;EBF1:-0.133041970626;HMX1:-0.139976189777;HIC1:-0.162199109449;HNF1A:-0.164478179584;SOX17:-0.180965930277;MEF2{A,B,C,D}:-0.181663576298;CUX2:-0.213731630974;TOPORS:-0.216663757848;CREB1:-0.22524590793;ZIC1..3:-0.239423547065;MTE{core}:-0.240890634552;TFDP1:-0.250860561697;POU3F1..4:-0.290904066434;MYB:-0.295402644838;MTF1:-0.318523659244;AHR_ARNT_ARNT2:-0.333448880846;GATA4:-0.336116893819;NANOG{mouse}:-0.342875566271;GATA6:-0.351742133227;FOS_FOS{B,L1}_JUN{B,D}:-0.357347993356;NFE2L1:-0.387363862693;ETS1,2:-0.394820215053;ZFP161:-0.412414899881;NKX2-2,8:-0.413705471346;HOXA9_MEIS1:-0.426902445187;HLF:-0.434744150747;EP300:-0.446581570052;TFAP2{A,C}:-0.458140552763;BACH2:-0.472848054295;EN1,2:-0.494681692897;TAL1_TCF{3,4,12}:-0.502169806553;ZNF423:-0.510814186666;TBP:-0.521054047887;RREB1:-0.524842221737;LHX3,4:-0.528543188534;GTF2I:-0.547833630904;GZF1:-0.549252066116;NFE2:-0.555831707454;SPIB:-0.565863353262;TFAP4:-0.595001375842;SPI1:-0.596850368772;HBP1_HMGB_SSRP1_UBTF:-0.633496021684;FOXP3:-0.649315446137;OCT4_SOX2{dimer}:-0.650733524009;IRF1,2:-0.668825057649;SOX5:-0.672265265624;TFCP2:-0.685200608416;NFKB1_REL_RELA:-0.720615074475;CRX:-0.744078633141;STAT5{A,B}:-0.776852700849;TP53:-0.778328962321;NR1H4:-0.785974445624;PAX2:-0.789489475516;MAZ:-0.803387329753;CEBPA,B_DDIT3:-0.804838252384;PRRX1,2:-0.805254698062;RUNX1..3:-0.806892220341;PAX1,9:-0.814363709987;POU5F1:-0.827476924889;BPTF:-0.84863265796;DMAP1_NCOR{1,2}_SMARC:-0.883797227882;NFE2L2:-0.899367612255;ESR1:-0.912575598405;GLI1..3:-0.914228511586;STAT2,4,6:-0.918293478743;VSX1,2:-0.936339047584;CDC5L:-0.946580690778;RBPJ:-1.00066122219;PATZ1:-1.00905867371;HSF1,2:-1.02300709406;RXR{A,B,G}:-1.02481144755;IKZF1:-1.02602797347;HMGA1,2:-1.03034694592;TEAD1:-1.03392112052;RXRA_VDR{dimer}:-1.05281930134;LEF1_TCF7_TCF7L1,2:-1.08155725044;PAX5:-1.11926435339;ESRRA:-1.15529875162;IRF7:-1.17722268307;NR3C1:-1.1914320734;ZNF384:-1.23393778498;HES1:-1.2510269837;ZNF238:-1.27586296533;NFIX:-1.30198303953;ZNF148:-1.34129396876;MZF1:-1.35668903869;PAX6:-1.41787149199;GTF2A1,2:-1.45241138012;PRDM1:-1.47053764108;TLX1..3_NFIC{dimer}:-1.50774039115;SRF:-1.50860067718;SMAD1..7,9:-1.54451789265;NFIL3:-1.75914889672;NFATC1..3:-1.83153101634;MYBL2:-1.90421920982;HOX{A5,B5}:-1.91804827578 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10609-108F6;search_select_hide=table117:FF:10609-108F6 | |||
}} | }} | ||
Latest revision as of 14:31, 3 June 2020
| Name: | small-cell gastrointestinal carcinoma cell line:ECC4 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11734 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11734
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11734
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.706 |
| 10 | 10 | 0.893 |
| 100 | 100 | 0.581 |
| 101 | 101 | 0.617 |
| 102 | 102 | 0.127 |
| 103 | 103 | 0.178 |
| 104 | 104 | 0.558 |
| 105 | 105 | 0.354 |
| 106 | 106 | 0.0176 |
| 107 | 107 | 0.0673 |
| 108 | 108 | 0.554 |
| 109 | 109 | 0.893 |
| 11 | 11 | 0.645 |
| 110 | 110 | 0.193 |
| 111 | 111 | 0.228 |
| 112 | 112 | 0.738 |
| 113 | 113 | 0.0494 |
| 114 | 114 | 0.503 |
| 115 | 115 | 0.0608 |
| 116 | 116 | 0.216 |
| 117 | 117 | 0.698 |
| 118 | 118 | 0.897 |
| 119 | 119 | 0.706 |
| 12 | 12 | 0.4 |
| 120 | 120 | 0.372 |
| 121 | 121 | 0.822 |
| 122 | 122 | 0.256 |
| 123 | 123 | 0.575 |
| 124 | 124 | 0.276 |
| 125 | 125 | 0.626 |
| 126 | 126 | 0.607 |
| 127 | 127 | 0.178 |
| 128 | 128 | 0.303 |
| 129 | 129 | 0.668 |
| 13 | 13 | 0.816 |
| 130 | 130 | 0.276 |
| 131 | 131 | 0.501 |
| 132 | 132 | 0.563 |
| 133 | 133 | 0.477 |
| 134 | 134 | 0.631 |
| 135 | 135 | 0.0797 |
| 136 | 136 | 0.029 |
| 137 | 137 | 0.0368 |
| 138 | 138 | 0.736 |
| 139 | 139 | 0.586 |
| 14 | 14 | 0.725 |
| 140 | 140 | 0.376 |
| 141 | 141 | 0.44 |
| 142 | 142 | 0.854 |
| 143 | 143 | 0.108 |
| 144 | 144 | 0.00441 |
| 145 | 145 | 0.264 |
| 146 | 146 | 0.5 |
| 147 | 147 | 0.885 |
| 148 | 148 | 0.594 |
| 149 | 149 | 0.854 |
| 15 | 15 | 0.601 |
| 150 | 150 | 0.656 |
| 151 | 151 | 0.514 |
| 152 | 152 | 0.0629 |
| 153 | 153 | 0.966 |
| 154 | 154 | 0.752 |
| 155 | 155 | 0.12 |
| 156 | 156 | 0.326 |
| 157 | 157 | 0.41 |
| 158 | 158 | 0.771 |
| 159 | 159 | 0.265 |
| 16 | 16 | 0.895 |
| 160 | 160 | 0.0553 |
| 161 | 161 | 0.839 |
| 162 | 162 | 0.901 |
| 163 | 163 | 0.58 |
| 164 | 164 | 0.285 |
| 165 | 165 | 0.538 |
| 166 | 166 | 0.335 |
| 167 | 167 | 0.147 |
| 168 | 168 | 0.0146 |
| 169 | 169 | 0.0593 |
| 17 | 17 | 0.353 |
| 18 | 18 | 0.553 |
| 19 | 19 | 0.198 |
| 2 | 2 | 0.566 |
| 20 | 20 | 0.94 |
| 21 | 21 | 0.0803 |
| 22 | 22 | 0.144 |
| 23 | 23 | 0.0488 |
| 24 | 24 | 0.405 |
| 25 | 25 | 0.669 |
| 26 | 26 | 0.711 |
| 27 | 27 | 0.949 |
| 28 | 28 | 0.999 |
| 29 | 29 | 0.453 |
| 3 | 3 | 0.257 |
| 30 | 30 | 0.502 |
| 31 | 31 | 0.595 |
| 32 | 32 | 0.0294 |
| 33 | 33 | 0.958 |
| 34 | 34 | 0.085 |
| 35 | 35 | 0.446 |
| 36 | 36 | 0.517 |
| 37 | 37 | 0.626 |
| 38 | 38 | 0.993 |
| 39 | 39 | 0.0517 |
| 4 | 4 | 0.656 |
| 40 | 40 | 0.212 |
| 41 | 41 | 0.39 |
| 42 | 42 | 0.218 |
| 43 | 43 | 0.189 |
| 44 | 44 | 0.421 |
| 45 | 45 | 0.05 |
| 46 | 46 | 0.987 |
| 47 | 47 | 0.411 |
| 48 | 48 | 0.969 |
| 49 | 49 | 0.23 |
| 5 | 5 | 0.754 |
| 50 | 50 | 0.188 |
| 51 | 51 | 0.408 |
| 52 | 52 | 0.132 |
| 53 | 53 | 0.268 |
| 54 | 54 | 0.271 |
| 55 | 55 | 0.454 |
| 56 | 56 | 0.785 |
| 57 | 57 | 0.555 |
| 58 | 58 | 0.405 |
| 59 | 59 | 0.111 |
| 6 | 6 | 0.348 |
| 60 | 60 | 0.112 |
| 61 | 61 | 0.467 |
| 62 | 62 | 0.201 |
| 63 | 63 | 0.226 |
| 64 | 64 | 0.928 |
| 65 | 65 | 0.501 |
| 66 | 66 | 0.294 |
| 67 | 67 | 0.748 |
| 68 | 68 | 0.48 |
| 69 | 69 | 0.884 |
| 7 | 7 | 0.854 |
| 70 | 70 | 0.501 |
| 71 | 71 | 0.612 |
| 72 | 72 | 0.213 |
| 73 | 73 | 0.45 |
| 74 | 74 | 0.291 |
| 75 | 75 | 0.839 |
| 76 | 76 | 0.717 |
| 77 | 77 | 0.0312 |
| 78 | 78 | 0.0974 |
| 79 | 79 | 0.705 |
| 8 | 8 | 0.99 |
| 80 | 80 | 0.0908 |
| 81 | 81 | 0.0797 |
| 82 | 82 | 0.155 |
| 83 | 83 | 0.199 |
| 84 | 84 | 0.493 |
| 85 | 85 | 0.0907 |
| 86 | 86 | 0.2 |
| 87 | 87 | 0.284 |
| 88 | 88 | 0.316 |
| 89 | 89 | 0.605 |
| 9 | 9 | 0.137 |
| 90 | 90 | 0.266 |
| 91 | 91 | 0.188 |
| 92 | 92 | 0.259 |
| 93 | 93 | 0.419 |
| 94 | 94 | 0.443 |
| 95 | 95 | 0.635 |
| 96 | 96 | 0.245 |
| 97 | 97 | 0.485 |
| 98 | 98 | 0.156 |
| 99 | 99 | 0.473 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11734
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
FF:0101533 gastrointestinal cancer cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
3119 (gastrointestinal system cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101533 (gastrointestinal cancer cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
